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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/constants_clubb.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>90f3976ec42f513108090135011800a1b9301734</commitId><timestamp>1708052285000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Small acc tweaks (#1144)

* Removing unneccesary acc declare statements.

* Removing use of acc routine in favor of new 1D array routine for smooth_max.

* The new tmp_calc_ngrdcol should be copied regardless of flag

* tmp_calc_ngrdcol also needs to be deleted unconditionally.

* Making separate conditional acc copy for edsclrdim variables.

* Adding ifdefs around prints inside of openacc kernel

* Making erf_cache and exp_cache scalars, there was no need for them to be arrays.

* Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc

* Removed files
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><commitId>b7ae0f1b35db3daf7bee3b5a6dd9221bd3c7e50d</commitId><timestamp>1707948133000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line in order to trigger Jenkins tests for CAM

In particular, Brian Griffin's code change from 7 Feb 2024, 

BIT_CHANGING:595e2c13024c1e913815d56ae724823a82bddc03 

changes answers when using l_diag_Lscale_from_tau=.false.

This code change was brought into the CAM repo in this commit: 

BIT_CHANGING:d275ac17f3e53d65641c3210df33ce0fad4e5aef
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><commitId>4b25d3a0efe6174e27aca762ff4a26fb0b656047</commitId><timestamp>1707839985000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@users.noreply.github.com</authorEmail><comment>fixing bug, name of wm_zt was left as "wm"
</comment><date>2024-02-13 09:59:45 -0600</date><id>4b25d3a0efe6174e27aca762ff4a26fb0b656047</id><msg>fixing bug, name of wm_zt was left as "wm"</msg><path><editType>edit</editType><file>src/CLUBB_core/stats_zt_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>a1965f133c3edf1eee0a090a1ee34b7e619f66ff</commitId><timestamp>1707869263000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>README change to add BIT_CHANGING:595e2c13024c1e913815d56ae724823a82bddc03 when using l_diag_Lscale_from_tau=.false. and for the CAM repo we have BIT_CHANGING:d275ac17f3e53d65641c3210df33ce0fad4e5aef as the hash
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><commitId>f33de5875ae5ea3ea237e8123efb804de0f82228</commitId><timestamp>1707410339000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></author><authorEmail>benjamin.andrew.stephens@gmail.com</authorEmail><comment>adding equals sign cuz I've had it up to here with this typo!
</comment><date>2024-02-08 09:38:59 -0700</date><id>f33de5875ae5ea3ea237e8123efb804de0f82228</id><msg>adding equals sign cuz I've had it up to here with this typo!</msg><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></culprit><inProgress>false</inProgress><nextBuild><number>429</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/429/</url></nextBuild><previousBuild><number>427</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/427/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action 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_class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#427</displayName><duration>1682542</duration><estimatedDuration>421619</estimatedDuration><fullDisplayName>clubb_backwards_compatibility_gfortran_test #427</fullDisplayName><id>427</id><keepLog>false</keepLog><number>427</number><queueId>28701</queueId><result>FAILURE</result><timestamp>1707384310996</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/427/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><commitId>595e2c13024c1e913815d56ae724823a82bddc03</commitId><timestamp>1707345359000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Fixing a bug where the Lscale used in calculating the damping
coefficient in advance_xm_wpxp_module.F90 should be Lscale_zm,
since the term is calculated on momentum grid levels.

Along the way, I found out that I could streamline the code
by passing in the value of Lscale_zm that was already calculated
(interpolated from Lscale) in advance_clubb_core. This value
could be passed into both advance_xm_wpxp and calc_stability_correction,
and then fed down.

This results of this code change are bit-for-bit identical with the
previous revision, most likely because this code only matters when
certain flags are flipped that are not used by default.
</comment><date>2024-02-07 16:35:59 -0600</date><id>595e2c13024c1e913815d56ae724823a82bddc03</id><msg>Fixing a bug where the Lscale used in calculating the damping</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>428</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/428/</url></nextBuild><previousBuild><number>426</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/426/</url></previousBuild></build><build 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some files have tabs in them, this broke my previous sed commands in various spots.
</comment><date>2024-02-01 13:46:04 -0600</date><id>b5ee3141be816d210f2942609e2889e2ddfc5b5a</id><msg>Some files have tabs in them, this broke my previous sed commands in various spots.</msg><path><editType>edit</editType><file>input/case_setups/nov11_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/bomex_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_97_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/fire_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/wangara_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf01_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_0003_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/nov11_altocu_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/atex_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/rico_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_forcings.in</file><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_class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/convert_acc_to_omp.bash</affectedPath><commitId>5d5c3fc2bbc789e680c668a92865d405828bb73b</commitId><timestamp>1706816883000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.
</comment><date>2024-02-01 13:48:03 -0600</date><id>5d5c3fc2bbc789e680c668a92865d405828bb73b</id><msg>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.</msg><path><editType>edit</editType><file>compile/convert_acc_to_omp.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/std_atmosphere/atmosphere.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/astex_a209_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/lba_sounding.in</affectedPath><commitId>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</commitId><timestamp>1706817691000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some more places we need changes.
</comment><date>2024-02-01 14:01:31 -0600</date><id>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</id><msg>Some more places we need changes.</msg><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/std_atmosphere/atmosphere.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/jun25_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/case_setups/arm_97_forcings.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_night_forcings.in</affectedPath><affectedPath>input/case_setups/nov11_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/arm_0003_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_nov02_forcings.in</affectedPath><affectedPath>input/case_setups/mpace_a_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cobra_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_oct14_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><commitId>0959fd13263a987aa267187eee415f7cb9b1da5a</commitId><timestamp>1706818453000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Hopefully the final sneaky error
</comment><date>2024-02-01 14:14:13 -0600</date><id>0959fd13263a987aa267187eee415f7cb9b1da5a</id><msg>Hopefully the final sneaky 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>These should've been single quotes. I didn't tested a files with single quotes, then for some reason did all the changes as double quotes and only retested with gfortran. RESOLVED:9b495acd26a0b009ec84845aa289c36befff0c41
</comment><date>2024-02-01 12:57:50 -0600</date><id>5ef956de6d5f08463887774b6ef968bb23309d97</id><msg>These should've been single quotes. I didn't tested a files with single quotes, then for some reason did all the changes as double quotes and only retested with gfortran. 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Removing backslashes. These should be slashes, but gnu,intel,nvidia generate code that treats slashes as whitespace and backslashes as a character, while cray treats backslashes as whitespace as well. This is easily fixed by using quotes, and in the meantime we will change the backslashes to forward slashes. See https://github.com/larson-group/clubb/issues/1138\#issuecomment-1910844013
</comment><date>2024-01-31 22:06:08 -0600</date><id>9b495acd26a0b009ec84845aa289c36befff0c41</id><msg>Removing backslashes. These should be slashes, but gnu,intel,nvidia generate code that treats slashes as whitespace and backslashes as a character, while cray treats backslashes as whitespace as well. This is easily fixed by using quotes, and in the meantime we will change the backslashes to forward slashes. 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>c3e2f32190f1d5c89b665126d1bc05d6dfbc91db</commitId><timestamp>1706760919000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding ifdefs around multicol netcdf outputting.
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</comment><date>2024-01-30 15:11:49 -0600</date><id>2e41ead98e7d13b192c3a7762336fa3dbc5a6989</id><msg>This is (amazingly) BIT_CHANGING. The differences are due to some compiler optimizations, see https://github.com/larson-group/clubb/pull/1133\#issuecomment-1865156979.</msg><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>05f2b8b38bf748ece44a7038f2b50044e26eaa5d</commitId><timestamp>1706657370000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Removing git log print before logging to file. On some systems/configs the command would cause a busy wait until the person running hit q, and it is superfluous since we are already saving the git log to a file.
</comment><date>2024-01-30 17:29:30 -0600</date><id>05f2b8b38bf748ece44a7038f2b50044e26eaa5d</id><msg>Removing git log print before logging to file. On some systems/configs the command would cause a busy wait until the person running hit q, and it is superfluous since we are already saving the git log to a file.</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>424</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/424/</url></nextBuild><previousBuild><number>422</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/422/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><originmaster _class='hudson.plugins.git.util.Build'><buildNumber>118</buildNumber><marked><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></marked><revision><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></revision></originmaster><origingrid_fixes _class='hudson.plugins.git.util.Build'><buildNumber>102</buildNumber><marked><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></marked><revision><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></revision></origingrid_fixes><originfeeding_gr_to_host _class='hudson.plugins.git.util.Build'><buildNumber>97</buildNumber><marked><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></marked><revision><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></revision></originfeeding_gr_to_host><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>422</buildNumber><marked><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><branch><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><branch><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><branch><SHA1>ec1d375e5efd317739abfe88edbd20680489ceed</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#422</displayName><duration>276388</duration><estimatedDuration>421619</estimatedDuration><fullDisplayName>clubb_backwards_compatibility_gfortran_test #422</fullDisplayName><id>422</id><keepLog>false</keepLog><number>422</number><queueId>28396</queueId><result>SUCCESS</result><timestamp>1706088310078</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/422/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><commitId>8237a01f73c7604f4480689a9703daff0df85178</commitId><timestamp>1706079736000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Now that the value of wp3 is being set to a boundary value of 0
at the first thermodynamic grid level above the surface, it doesn't
make sense to loop over budget terms anymore at that particular level,
since they don't factor in the solution and give a false impression.

With this commit, wp3 budget terms now start their loop at level 3.

This commit is BIT_CHANGING, but the only thing that changes are
budget stats for a couple of wp3 budget terms. The solution
does not actually change.
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Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs.
</comment><date>2024-01-21 00:50:08 -0600</date><id>529afce6dc6af438b9658f44ffa108d16a5ad147</id><msg>Adding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_nvhpc_gpu.bash</affectedPath><commitId>ab99eb01e08ba10a80c1f6881dc13eaca2c9e992</commitId><timestamp>1705820078000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding new compiler flags to nvfortran GPU compile script
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>be2fe61a1e5897d417ae01cf335caa727a85c7fe</commitId><timestamp>1705612663000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Fixing bug. See https://github.com/larson-group/clubb/issues/1139
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</comment><date>2024-01-18 15:18:04 -0600</date><id>cad1c8b0360b5beaef4648ef0d755818e0823e89</id><msg>Fixing tridiag solver bug. See https://github.com/larson-group/clubb/issues/1139</msg><path><editType>edit</editType><file>src/CLUBB_core/tridiag_lu_solver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><commitId>f28975376d58c19257922a4cca10ae07ff251d05</commitId><timestamp>1705629086000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Slight rework to acc data statements. This allows us to use return calls in advance_clubb_core again. See https://github.com/larson-group/clubb/issues/1139
</comment><date>2024-01-18 19:51:26 -0600</date><id>f28975376d58c19257922a4cca10ae07ff251d05</id><msg>Slight rework to acc data statements. This allows us to use return calls in advance_clubb_core again. See https://github.com/larson-group/clubb/issues/1139</msg><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>ec65c38de8cd427398f788dfdfc3537434a15dd7</commitId><timestamp>1705629109000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Fixing small GPU stats bug
</comment><date>2024-01-18 19:51:49 -0600</date><id>ec65c38de8cd427398f788dfdfc3537434a15dd7</id><msg>Fixing small GPU stats bug</msg><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><commitId>23fa7789cb8cb963c4536910b97b0c48d6f105c2</commitId><timestamp>1705629562000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Changing xm to out in mono flux solver. There is no need for it to be inout, and it confused me for a bit so I'm fixing it.
</comment><date>2024-01-18 19:59:22 -0600</date><id>23fa7789cb8cb963c4536910b97b0c48d6f105c2</id><msg>Changing xm to out in mono flux solver. There is no need for it to be inout, and it confused me for a bit so I'm fixing it.</msg><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>420</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/420/</url></nextBuild><previousBuild><number>418</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/418/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><originmaster _class='hudson.plugins.git.util.Build'><buildNumber>118</buildNumber><marked><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></marked><revision><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></revision></originmaster><origingrid_fixes _class='hudson.plugins.git.util.Build'><buildNumber>102</buildNumber><marked><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></marked><revision><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></revision></origingrid_fixes><originfeeding_gr_to_host _class='hudson.plugins.git.util.Build'><buildNumber>97</buildNumber><marked><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></marked><revision><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></revision></originfeeding_gr_to_host><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>418</buildNumber><marked><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><branch><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><branch><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><branch><SHA1>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#418</displayName><duration>1633681</duration><estimatedDuration>421619</estimatedDuration><fullDisplayName>clubb_backwards_compatibility_gfortran_test #418</fullDisplayName><id>418</id><keepLog>false</keepLog><number>418</number><queueId>28112</queueId><result>SUCCESS</result><timestamp>1705051507491</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/418/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/mean_adv.F90</affectedPath><commitId>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</commitId><timestamp>1705003858000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am altering the mean advection code in preparation for ghost point
removal, since the mean advection code incorporates the ghost point
in its current calculations.

The lower boundary is now treated in the same manner as the
upper boundary, where a zero derivative over the boundary is assumed.
Any interaction of the current ghost level with the model code is
now removed from the mean advection calculation.

The results are bit-for-bit for most cases, but not all of them.
They are not necessarily expected to be bit-for-bit. There are
no discernable differences on plots of priority cases. However,
this commit is technically BIT_CHANGING.
</comment><date>2024-01-11 14:10:58 -0600</date><id>18afbb900eaa3202bc48b64daf9daa974ee8dd4c</id><msg>I am altering the mean advection code in preparation for ghost point</msg><path><editType>edit</editType><file>src/CLUBB_core/mean_adv.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>419</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/419/</url></nextBuild><previousBuild><number>417</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/417/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><originmaster _class='hudson.plugins.git.util.Build'><buildNumber>118</buildNumber><marked><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></marked><revision><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></revision></originmaster><origingrid_fixes _class='hudson.plugins.git.util.Build'><buildNumber>102</buildNumber><marked><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></marked><revision><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></revision></origingrid_fixes><originfeeding_gr_to_host _class='hudson.plugins.git.util.Build'><buildNumber>97</buildNumber><marked><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></marked><revision><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></revision></originfeeding_gr_to_host><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>417</buildNumber><marked><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><branch><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><branch><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><branch><SHA1>f4277535627c705e8851dc3112160fd415252042</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#417</displayName><duration>127466</duration><estimatedDuration>421619</estimatedDuration><fullDisplayName>clubb_backwards_compatibility_gfortran_test #417</fullDisplayName><id>417</id><keepLog>false</keepLog><number>417</number><queueId>28042</queueId><result>SUCCESS</result><timestamp>1704965109873</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/417/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>753138f581f211a7c4d6798f031b4109c5e08559</commitId><timestamp>1704930792000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>BIT_CHANGING:1ce764cad4ea41e739b6ce9d95d8bec7db72097f
</comment><date>2024-01-10 17:53:12 -0600</date><id>753138f581f211a7c4d6798f031b4109c5e08559</id><msg>BIT_CHANGING:1ce764cad4ea41e739b6ce9d95d8bec7db72097f</msg><path><editType>edit</editType><file>README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_nvhpc.bash</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_acc_vs_cpu_diffness/Jenkinsfile</affectedPath><commitId>a993b7b3e95ba78c077dd24290baff1b08f169c5</commitId><timestamp>1704948886000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making nightly cpu vs gpu test use a new config script for the cpu compile. This is the minimize the differences to be only whether or not the openacc GPU code is enabled.
</comment><date>2024-01-10 22:54:46 -0600</date><id>a993b7b3e95ba78c077dd24290baff1b08f169c5</id><msg>Making nightly cpu vs gpu test use a new config script for the cpu compile. This is the minimize the differences to be only whether or not the openacc GPU code is enabled.</msg><path><editType>add</editType><file>compile/config/linux_x86_64_nvhpc.bash</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_acc_vs_cpu_diffness/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_nvhpc_gpu_acc_vs_cpu_diffness/Jenkinsfile</affectedPath><commitId>f4277535627c705e8851dc3112160fd415252042</commitId><timestamp>1704951278000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Limiting mpace_b to 250 timestpes for gpu vs cpu test. The mpace_b test passed on my home GPU (RTX 3080), but not when run in jenkens on nelson (P4000). So either the tolerance is too strict, or we're running too many timesteps for mpace_b. Currently the largest difference on mpace_b multicol check is 3.31551e-05 on jenkins, so if this fails also I'll up the tolerance for mpace_b instead of further reducing timesteps run.
</comment><date>2024-01-10 23:34:38 -0600</date><id>f4277535627c705e8851dc3112160fd415252042</id><msg>Limiting mpace_b to 250 timestpes for gpu vs cpu test. The mpace_b test passed on my home GPU (RTX 3080), but not when run in jenkens on nelson (P4000). So either the tolerance is too strict, or we're running too many timesteps for mpace_b. Currently the largest difference on mpace_b multicol check is 3.31551e-05 on jenkins, so if this fails also I'll up the tolerance for mpace_b instead of further reducing timesteps run.</msg><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_acc_vs_cpu_diffness/Jenkinsfile</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>418</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/418/</url></nextBuild><previousBuild><number>416</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/416/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action 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(#1133)

* Initial threadprivate removals and simple changes.

* model flags update, incomplete

* Some updates, almost working

* Added saturation_formula and l_host_applies_sfc_fluxes to clubb_config_flags

* Accompanying changes to flags lists

* Changes to corrrelation array setup

* Adding more flag checking

* Forgot to set l_host_applies_sfc_fluxes in initialize_clubb_config_flags_type and commit adding l_implemented to the argument loit

* Adding saturation parameters to api

* Most of the way through passing sclr_dim, hydromet_dim, edsclr_dim, and sclr_tol through arguemnt lists. Moved first_write breaking silhs stats aparently, and bit changing due to the way we were writing sclr_tol for cases that have sclr_dim=0 (arm different, gabls2 BFB).

* Removing accidentally commited files.

* Fixed silhs output, all cases BFB but sclr_tol is saved differently to stats files in cases where sclr_dim = 0, so this is bc also bc:fb20458d5212b007c79c17613201af637bbc3d7e since that introduced the difference.

* Changing stats logicals back to false, only set to true for testing. So technically BIT_CHANGING

* Starting array_vars changes.

* No more global scalar indices

* Starting to remove hydromet indices

* Finished the annoying part with the microphysics interfaces.

* No more global variables in array_index. All cases BFB relative to last commit.

* No more global pdf_dim, Ncnp2_on_Ncnm2 now set via argument list, and added temporary hydromet_dim_glob because I thought it would fix a bug but it didn't, it might in the future though, so I left it in for now, it will be removed soon.

* Added nan checking before overriding default value for Ncnp2_on_Ncnm2

* Finished hydromet_dim argument listing and removed global versions of it as well as sclr_dim, edsclr_dim, and sclr_tol.

* open_netcdf_for_writing does nothing if nvars=0 for a stats file, which is understandable, but now that we call first_write immediately after we need that also to check for nvar=0

* Adding better error messages to stats_init

* The nvidia compiler does not like zero size arrays.

* Adding defaults for scalar arrays values in clubb driver, and adding an error check after calling stats_init.

* Reverting accidental changes to clubb_thread_test

* Changing name of scarr/scalar_array to sclr_idx and hydromet_array to hm_metadata

* Adding new types to _api

* Fixing erroneous name changes.

* Fixing bug introduced in 65987c8a77496f7bb10bfd28717345b1f63de1b7

* Removing print

* QuadTune: updates setup in order to read in 30x30
regional files automatically.

For #910.

* Updating the code to set the bottom of the thermodynamic level grid for
diffusion at thermodynamic level 2 -- the first level above the surface.

This is being done in preparation for ghostless gridding.

* Commit to enforce a fixed-point boundary condition of wp3=0 at
thermodynamic level k = 2, the first above-ground thermodynamic level.

This is being done in preparation for ghostless gridding.

This commit is bc.

Results are much more similar to the previous results than using
using zero-flux as the lower boundary condition for wp3.

* With wp3 now being set to a fixed-point boundary condition value
of 0 at the current thermodynamic level 2 (first t-lev above the
surface), it is not necessary to loop over level 2 within the code
for each wp3 term.

This commit is BIT_CHANGING, but only for the wp3 budget terms
(e.g. wp3_ta) in the zt output file at level k = 2. It doesn't change
the actual answer. All other variables are bit-for-bit identical.

* Removing omp parallel test line

* Removing parameter declarion around l_quintic_poly_interp. Having this be a parameter causes bit changes when using -O2

---------

Co-authored-by: vlarson &lt;vlarson@uwm.edu&gt;
Co-authored-by: bmg929 &lt;bmg2@uwm.edu&gt;
</comment><date>2024-01-03 19:36:38 -0600</date><id>ddbb50b7dd661e83d6b06136f6596ca5b139e64b</id><msg>Threadpublic 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><commitId>d0a28efd5a173fe59114e69f16d999ab31cc6080</commitId><timestamp>1703174134000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>With wp3 now being set to a fixed-point boundary condition value
of 0 at the current thermodynamic level 2 (first t-lev above the
surface), it is not necessary to loop over level 2 within the code
for each wp3 term.

This commit is BIT_CHANGING, but only for the wp3 budget terms
(e.g. wp3_ta) in the zt output file at level k = 2. It doesn't change
the actual answer. All other variables are bit-for-bit identical.
</comment><date>2023-12-21 09:55:34 -0600</date><id>d0a28efd5a173fe59114e69f16d999ab31cc6080</id><msg>With wp3 now being set to a fixed-point boundary condition value</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>413</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/413/</url></nextBuild><previousBuild><number>411</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/411/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><originmaster _class='hudson.plugins.git.util.Build'><buildNumber>118</buildNumber><marked><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></marked><revision><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><branch><SHA1>12407142b14155687d0d80b174796965d2793b12</SHA1><name>origin/master</name></branch></revision></originmaster><origingrid_fixes _class='hudson.plugins.git.util.Build'><buildNumber>102</buildNumber><marked><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></marked><revision><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><branch><SHA1>b19b67713baf175f99baa0cb0bdde6e8c1fbc588</SHA1><name>origin/grid_fixes</name></branch></revision></origingrid_fixes><originfeeding_gr_to_host _class='hudson.plugins.git.util.Build'><buildNumber>97</buildNumber><marked><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></marked><revision><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><branch><SHA1>b928767c7238139d599dc55420d2a0956161726a</SHA1><name>origin/feeding_gr_to_host</name></branch></revision></originfeeding_gr_to_host><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>411</buildNumber><marked><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><branch><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><branch><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><branch><SHA1>77ce77409e9da770515f66bbb50a869da74aca7d</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#411</displayName><duration>1838584</duration><estimatedDuration>421619</estimatedDuration><fullDisplayName>clubb_backwards_compatibility_gfortran_test #411</fullDisplayName><id>411</id><keepLog>false</keepLog><number>411</number><queueId>27507</queueId><result>SUCCESS</result><timestamp>1702977909389</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/411/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>7a0ec8d6672de534c53569c0904ca034a0df627a</commitId><timestamp>1702916756000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: updates setup in order to read in 30x30
regional files automatically.

For #910.
</comment><date>2023-12-18 10:25:56 -0600</date><id>7a0ec8d6672de534c53569c0904ca034a0df627a</id><msg>QuadTune: updates setup in order to read in 30x30</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/diffusion.F90</affectedPath><commitId>7b2313fdf3b27db1521bac1facbbc9e595a729df</commitId><timestamp>1702943185000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/griffinb</absoluteUrl><fullName>Brian Griffin</fullName></author><authorEmail>31553422+bmg929@users.noreply.github.com</authorEmail><comment>Updating the code to set the bottom of the thermodynamic level grid for
diffusion at thermodynamic level 2 -- the first level above the surface.

This is being done in preparation for ghostless gridding.
</comment><date>2023-12-18 17:46:25 -0600</date><id>7b2313fdf3b27db1521bac1facbbc9e595a729df</id><msg>Updating the code to set the bottom of the thermodynamic level grid for</msg><path><editType>edit</editType><file>src/CLUBB_core/diffusion.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><commitId>77ce77409e9da770515f66bbb50a869da74aca7d</commitId><timestamp>1702943185000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/griffinb</absoluteUrl><fullName>Brian Griffin</fullName></author><authorEmail>31553422+bmg929@users.noreply.github.com</authorEmail><comment>Commit to enforce a fixed-point boundary condition of wp3=0 at
thermodynamic level k = 2, the first above-ground thermodynamic level.

This is being done in preparation for ghostless gridding.

This commit is BIT_CHANGING.

Results are much more similar to the previous results than using
using zero-flux as the lower boundary condition for wp3.
</comment><date>2023-12-18 17:46:25 -0600</date><id>77ce77409e9da770515f66bbb50a869da74aca7d</id><msg>Commit to enforce a fixed-point boundary condition of wp3=0 at</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/griffinb</absoluteUrl><fullName>Brian Griffin</fullName></culprit><inProgress>false</inProgress><nextBuild><number>412</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/412/</url></nextBuild><previousBuild><number>410</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/410/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupTaus.py</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><commitId>d4e06311a21b35319ff520a156da3f4e5ea21fa9</commitId><timestamp>1702424778000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@users.noreply.github.com</authorEmail><comment>Added new Brunt-Väisälä frequency plots to pyplotgen's VariableGroupTaus
CLUBB ticket #1132, BIT_CHANGING because new output fields were added
- Added 3 new Brunt-Väisälä output fields:
    - bv_freq_sqd_smth: The smoothed bv_mixed which is used to calculate the invrs_taus
    - bv_freq_pos: The positive part of the sqrt of bv_freq_sqd_smth
    - bv_freq_out_cloud: The out-of-cloud part of bv_freq_pos
- Added the plots of those fields to VariableGroupTaus
</comment><date>2023-12-12 17:46:18 -0600</date><id>d4e06311a21b35319ff520a156da3f4e5ea21fa9</id><msg>Added new Brunt-Väisälä frequency plots to pyplotgen's VariableGroupTaus</msg><path><editType>edit</editType><file>src/CLUBB_core/stats_zm_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupTaus.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>f76ff058288183ffc88269355473315d645f67ed</commitId><timestamp>1702425732000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Adds commas to fix bug
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The value of wp3_zm at the model lower and upper boundaries is now
assumed to be 0 for simplicity and conservation.
</comment><date>2023-12-08 10:15:24 -0600</date><id>6a1ad520c171e5f5eb8cc1c590e1405459574dd6</id><msg>Adding boundary conditions for the wp3_term_ta_ADG1_lhs subroutine.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><commitId>ed4235dea7c79ddba33a46759c16a1c149b92e57</commitId><timestamp>1702052124000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/griffinb</absoluteUrl><fullName>Brian Griffin</fullName></author><authorEmail>31553422+bmg929@users.noreply.github.com</authorEmail><comment>For single loop vectors, removing the "collapse(2)" from the acc statements.

This commit is not bit changing, but the previous commit to this branch
was BIT_CHANGING:902d6caed8a4533f59f4165106276959b4f90895
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BIT_CHANGING! CLUBB ticket #1115
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- Added a calculation for `cloud_frac_zm` when `l_call_pdf_closure_twice=false` and `l_trapezoidal_rule_zt=false`
This is BIT_CHANGING if `l_call_pdf_closure_twice=false` and `l_trapezoidal_rule_zt=false` since, in that case, `cloud_frac_zm` is now nonzero.
- Some minor formatting fixes
- Some minor fixes to pyplotgen's source code
- Added `a3_coef_min` to Lscale tunable_parameters.in
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Since this is a change to the order of operations, it is BIT_CHANGING.
</comment><date>2023-11-14 13:45:56 -0600</date><id>8bb631162837feba13cb64f43c1a40aa47873020</id><msg>Changing order of sqrt and **3 to improve stability, see clubb#1126. Since this is a change to the order of operations, it is BIT_CHANGING.</msg><path><editType>edit</editType><file>src/CLUBB_core/Skx_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/constants_clubb.F90</affectedPath><commitId>527360ddcce694dc3b89e69890792de97bd411da</commitId><timestamp>1699995955000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Setting the minimum tolerance to be epsilon, this is BIT_CHANGING but only for single precision. See larson-group/clubb#1126
</comment><date>2023-11-14 15:05:55 -0600</date><id>527360ddcce694dc3b89e69890792de97bd411da</id><msg>Setting the minimum tolerance to be epsilon, this is BIT_CHANGING but only for single precision. See larson-group/clubb#1126</msg><path><editType>edit</editType><file>src/CLUBB_core/constants_clubb.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/error_four_cases.in</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>54063504021c09c54346da26e76e5888b2f50fe2</commitId><timestamp>1699997980000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! Updated taus code calculations - CLUBB ticket #1115 (#1125)

- Changed invrs_tau_xp2/wp2 calculations to match the wpxp calculation:
   Those now have a brunt_freq_pos and a brunt_freq_out_cloud term
- Changed tmp_calc magic number from .007 to .001
- Changed upper clipping bound for Ri_zm from 12 to 2 in invrs_tau_wpxp calculation
- Reversed accidental changes to input_misc/tuner/error_four_cases.in
</comment><date>2023-11-14 15:39:40 -0600</date><id>54063504021c09c54346da26e76e5888b2f50fe2</id><msg>BIT_CHANGING! 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- Modified super call in AnimationPanel constructor
- Removed first frame from consideration when determining x-axis scaling since the starting values are sometimes large compared to the other time steps
</comment><date>2023-11-10 15:47:14 -0600</date><id>37ef1bb08dd6e2246215d26d3fc4128d9ffe3cec</id><msg>Quick fix for AnimationPanel so it works with the background-rcm changes (#1123)</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/src/AnimationPanel.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_rad_zt_module.F90</affectedPath><affectedPath>src/Benchmark_cases/cloud_sed_module.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_type_utilities.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/advance_microphys_module.F90</affectedPath><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><affectedPath>src/SILHS/output_2D_samples_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_lh_zt_module.F90</affectedPath><affectedPath>src/CLUBB_core/setup_clubb_pdf_params.F90</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>src/CLUBB_core/stats_rad_zm_module.F90</affectedPath><affectedPath>src/KK_microphys_module.F90</affectedPath><affectedPath>src/estimate_scm_microphys_module.F90</affectedPath><affectedPath>src/ice_dfsn_module.F90</affectedPath><affectedPath>src/lh_microphys_driver_module.F90</affectedPath><affectedPath>src/microphys_driver.F90</affectedPath><affectedPath>src/silhs_category_variance_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_clubb_utilities.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/microphys_interface.inc</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_lh_sfc_module.F90</affectedPath><affectedPath>src/CLUBB_core/output_grads.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/SILHS/silhs_api_module.F90</affectedPath><affectedPath>src/mixed_moment_PDF_integrals.F90</affectedPath><affectedPath>src/soil_vegetation.F90</affectedPath><affectedPath>src/CLUBB_core/numerical_check.F90</affectedPath><affectedPath>src/Microphys_utils/microphys_stats_vars_module.F90</affectedPath><affectedPath>src/CLUBB_core/precipitation_fraction.F90</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_sfc_module.F90</affectedPath><affectedPath>src/jacobian.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/morrison_microphys_module.F90</affectedPath><affectedPath>src/simple_rad_module.F90</affectedPath><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><affectedPath>src/KK_microphys/KK_upscaled_turbulent_sed.F90</affectedPath><affectedPath>src/coamps_microphys_driver_module.F90</affectedPath><affectedPath>src/KK_microphys/KK_upscaled_covariances.F90</affectedPath><commitId>3dc7571b0baa54dc855087caef4c36315b067fbb</commitId><timestamp>1699661720000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>New Stats Indices Type (#1118)

* Grouping stats indices into a derived type and making that accessible globally, for now. This does not run yet, but a checkpoint I wish to save.

* Checkpoint to save

* Checkpoint

* It actually works now and is BFB with every case.

* Starting to push the new derived type through the argument list.

* The new dervied type, now stats_metadata, has been fed through the argument list.

* Moved l_stats_samp into stats_metadata

* Moved all the other stats_variables into stats_metadata

* Small cleanup

* Fixes a stats bug when calling compute_sample_mean in silhs.

* Arrays in stats_metadata need only be allocated once, but we may want to call the stats init routines to set up more stats variables. So now we check for allocation before allocating. Also made the stat_indices type publicly available through clubb_api.

* This should be initialized to 0. The new changes in cam were able to tease this out, which is a good sign.

* A couple more to initialize to zero.

* Moving stats_metadata to before stats_ variables in argument lists, just for consistency.

* Changing stat_indices to stats_metadata_type
</comment><date>2023-11-10 18:15:20 -0600</date><id>3dc7571b0baa54dc855087caef4c36315b067fbb</id><msg>New Stats Indices Type 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displace tunable (#1122)

CLUBB ticket #1115
Added the previously hard-coded z_displace as a tunable parameter.
</comment><date>2023-11-09 15:04:06 -0600</date><id>63825a3122331a050c2e4972913b86cae0ce4b83</id><msg>Z displace tunable 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><commitId>d8f2de7144923bda3de7c3d1995433caa8877821</commitId><timestamp>1699478932000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Updated CLUBB so that adj_low_res_nu (which can be called on its own
or called through calling setup_parameters) no longer uses
momentum_heights and thermodynamic_heights, but rather makes use
of gr%zm and gr%zt, which are always set and available by the
time the calls are made.
</comment><date>2023-11-08 15:28:52 -0600</date><id>d8f2de7144923bda3de7c3d1995433caa8877821</id><msg>Updated CLUBB so that adj_low_res_nu (which can be called on its own</msg><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><commitId>84ce1af7b0d5df14062d543b1cf684bea914378e</commitId><timestamp>1699486824000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Removing begin_height and end_height as outputs from setup_grid. They
are only necessary as local variables inside of setup_grid.
</comment><date>2023-11-08 17:40:24 -0600</date><id>84ce1af7b0d5df14062d543b1cf684bea914378e</id><msg>Removing begin_height and end_height as outputs from setup_grid. 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><affectedPath>input/tunable_parameters_tauMatchLscale/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>input/tunable_parameters_tauMatchLscale/tunable_parameters.in</affectedPath><commitId>12364631b5749635e3cb3e50974ddab3a7fe5d4e</commitId><timestamp>1698787332000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)

- Added new folder input/tunable_parameters_tauMatchLscale/ for latest taus code setup reproducing the master Lscale output.
- Changes in src/CLUBB_core_mixing_length.F90:
   - Renamed ddzt_umvm -&gt; ddzt_umvm_sqd
             ddzt_umvm_clipped -&gt; ddzt_umvm_sqd_clipped
             sqrt_ddzt_umvm -&gt; norm_ddzt_umvm
             smooth_sqrt_ddzt_umvm -&gt; smooth_norm_ddzt_umvm
             Ri_zm_clipped -&gt; Ri_zm_smooth in some places
   - Made some variable replacements for consistency's sake
- Fixed path of log files in run_scripts/run_bindiff_all.py
</comment><date>2023-10-31 16:22:12 -0500</date><id>12364631b5749635e3cb3e50974ddab3a7fe5d4e</id><msg>Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)</msg><path><editType>add</editType><file>input/tunable_parameters_tauMatchLscale/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>add</editType><file>input/tunable_parameters_tauMatchLscale/tunable_parameters.in</file></path><path><editType>edit</editType><file>run_scripts/run_bindiff_all.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>input/tunable_parameters_tauMatchLscale/tunable_parameters.in</affectedPath><commitId>05a4556763f089ac3afdb1aeb032e827040cc874</commitId><timestamp>1698795774000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120)

- Removed commented lines from tunable_parameters.in file in input/tunable_parameters_tauMatchLscale
- Increased z_displace value from 10 to 25. This value was chosen so that the taus code with the parameter and flag settings in input/tunable_parameters_tauMatchLscale match the master Lscale output below clouds
- Fixed some issues with the new parameter wpxp_Ri_exp:
   - Moved new exponentiation to a place so that it emulates the previous version with sqrt(Ri_zm)
   - Adjusted code for l_smooth_min_max=true to match the default version
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>c4b477cbb4e60bfaa2de7ca9afa404ab96d026fa</commitId><timestamp>1698506973000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Updates setup to reproduce results from sens0707 sample 34.

For #910.
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For #910.
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For #910.
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* Finally removing scratch variables.

* Zeroing out below ground levels to prevent NaN in stats.
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Richardson number exponent - CLUBB ticket #1102 (#1114)

BIT_CHANGING! Added the exponent to the Richardson number in the calculation of the invrs_tau_wpxp threshold term in src/CLUBB_core/mixing_length.F90  to the list of tunable parameters.
This is bit changing due to the difference in Fortran between taking the sqrt and the .5th power.
</comment><date>2023-10-12 14:04:34 -0500</date><id>f7a5473a232f30408d811214f1b190beeeb60dbf</id><msg>Tunable Richardson number exponent - CLUBB ticket #1102 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/RUN_CASES</affectedPath><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>run_scripts/run_scm.bash</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><commitId>6de84c3d28a538d620009cbe3d98a634782820be</commitId><timestamp>1696965177000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Major overhaul of run_bindiff_all.py

CLUBB ticket #1102 - pull request #1113
- Changed the outputs to be more evocative and differentiating between types of differences: Now we can distinguish between differences in the set of variables or differences in specific variables
- Fixed the issue where a variable that appears in only one of the compared files would either not be detected or cause the script to crash, depending on the order of input.
- Changed file output structure
- Changed case handling depending on existing files:
    - Case is still treated even if it is commented in RUN_CASES
    - Case is still treated even if not all files exist and messages are printed accordingly
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For #910.
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For #910
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><commitId>6654de29a1f573a0a6562d29393a4e18eeabd2ef</commitId><timestamp>1695421268000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)

BIT_CHANGING! Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102
Changes in input/stats/all_stats.in, src/CLUBB_core/advance_clubb_core_module.F90, src/CLUBB_core/mixing_length.F90, src/CLUBB_core/stats_variables.F90, and src/CLUBB_core/stats_zm_module.F90
Ri_zm was added to input/stats/standard_stats.in
</comment><date>2023-09-22 17:21:08 -0500</date><id>6654de29a1f573a0a6562d29393a4e18eeabd2ef</id><msg>Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)</msg><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zm_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupTaus.py</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><commitId>405d449ae8bc9a7dad1b37fe5cb4964e397bd92e</commitId><timestamp>1695428333000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)

This commit is BIT_CHANGING because:
1. the output field Richardson_num was removed.
2. Since the flag l_use_shear_turb_freq_sqd was removed, the variable shear_sqd is now always written to disk. That means previously, the outputted field shear_sqd was 0 everywhere whereas now it is not anymore. The calculation of shear_sqd within CLUBB did not change!
- Removed mentions in input/stats/all_stats.in and standards_stats.in
- Removed mentions in src/CLUBB_core/stats_variables.F90 and stats_zm_module.F90
- In src/CLUBB_core/advance_helper_module.F90 removed mentions to [i]Richardson_num[_clipped], as well as l_use_shear_turb_freq_sqd, l_Richardson_vert_avg, and turb_freq_sqd sinc those are only used for calculation of Richardson_num.
</comment><date>2023-09-22 19:18:53 -0500</date><id>405d449ae8bc9a7dad1b37fe5cb4964e397bd92e</id><msg>BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>5ed8fb8308e908d83cc8c9c34c61b80b0449a995</commitId><timestamp>1695125054000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: adds commented-out attempt to vary the bar base
but it's not working yet.

For #910.
</comment><date>2023-09-19 07:04:14 -0500</date><id>5ed8fb8308e908d83cc8c9c34c61b80b0449a995</id><msg>QuadTune: adds commented-out attempt to vary the bar base</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupTaus.py</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><commitId>1a81400d8f997d9c9b3a128a4cf4a001dd849b3e</commitId><timestamp>1695154187000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)

- Added C6_term and bv_freq fields to all_stats.F90 and standard_stats.F90
- Added new fields to VariableGroupTaus.py in pyplotgen
- Added calls to stat_update_var to advance_clubb_core_module.F90
- Modified stats_variables.F90 and stats_zm_module.F90 accordingly
</comment><date>2023-09-19 15:09:47 -0500</date><id>1a81400d8f997d9c9b3a128a4cf4a001dd849b3e</id><msg>Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)</msg><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupTaus.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zm_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>fb63ca4ea140c4abedef5567d8c33c331cce9ec1</commitId><timestamp>1694692835000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Adds chisqd metric and bar chart for a global run.
linSolnBiasesCol has been redefined to mean simulation - obs.

For #910.
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the previous commits for the --background-rcm option of pyplotgen,
I had previously thought that the code to extract values of rcm from
a file wanted the case name as input, but in actuality it required
the directory name instead of the case name. I am correcting that
error in this commitment.
</comment><date>2023-09-13 13:06:59 -0500</date><id>f974d0717da12952984f5f165abf99e4f1586115</id><msg>In the previous commits for the --background-rcm option of pyplotgen,</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupKKMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupNormalizedVariations.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupWs.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupScalars.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupCorrelations.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupTaus.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupLiquidMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBase.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/CaseGallerySetup.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupNondimMoments.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupIceMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/VariableGroup.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSubcolumns.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/src/Panel.py</affectedPath><commitId>1510c34473a4c7b51f7dd08fb75cff28c701af07</commitId><timestamp>1694633655000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am updating the --background-rcm option of pyplotgen to make two
changes:

1) Use a grayscale color map.
2) Set the maximum of the colorbar to be twice the largest value in
the rcm plot so that the colors aren't so dark.
</comment><date>2023-09-13 14:34:15 -0500</date><id>1510c34473a4c7b51f7dd08fb75cff28c701af07</id><msg>I am updating the --background-rcm option of pyplotgen to make two</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/src/Panel.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/tunable_parameters_Lscale/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><commitId>e29d9d7e6d8b2857cd4f85382d189b21c31332b7</commitId><timestamp>1694635856000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)

- Added new flags to inut/tunable_parameters_Lscale/configurable_model_flags.in
- Changed default setting for l_use_tke_in_wp3_pr_turb_term in model_flags.F90 from false to true
</comment><date>2023-09-13 15:10:56 -0500</date><id>e29d9d7e6d8b2857cd4f85382d189b21c31332b7</id><msg>BIT_CHANGING for lscale setup. 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</comment><date>2023-09-12 21:02:06 -0500</date><id>cbbd5fc72fb563eb89430f77b0d790b32aea1a4c</id><msg>Small additions that allow all cases to run with pyplotgen.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupCorrelations.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupNormalizedVariations.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupLiquidMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupScalars.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupTaus.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupNondimMoments.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSubcolumns.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupKKMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupIceMP.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/src/VariableGroup.py</affectedPath><commitId>693a178ea4becdb7f4950d8406c89a4953bdbbcd</commitId><timestamp>1694570977000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Needed to remove a print statement.
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This will be made optional with the next commit.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.py</affectedPath><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><affectedPath>postprocessing/pyplotgen/src/CaseGallerySetup.py</affectedPath><affectedPath>postprocessing/pyplotgen/pyplotgen.py</affectedPath><commitId>35388814c501b3b4754806ecdb494cbcadc77d0a</commitId><timestamp>1694154859000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Added option to plot "Lumped Buoyance Budgets" (wpxp_bp combined with
wpxp_pr3) to the pyplotgen plotter for CLUBB.
</comment><date>2023-09-08 01:34:19 -0500</date><id>35388814c501b3b4754806ecdb494cbcadc77d0a</id><msg>Added option to plot "Lumped Buoyance Budgets" (wpxp_bp combined with</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path><path><editType>add</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/CaseGallerySetup.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/pyplotgen.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/src/CaseGallerySetup.py</affectedPath><commitId>db8ea9192a6aa0da6612223ebf569e46f293c92d</commitId><timestamp>1694155550000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Added a statement that I had previously omitted. The new combined budget
works great!
</comment><date>2023-09-08 01:45:50 -0500</date><id>db8ea9192a6aa0da6612223ebf569e46f293c92d</id><msg>Added a statement that I had previously omitted. 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This commit is NOT bit changing
- Removed remaining mentions of brunt_vaisala_freq_sqd_plus
- Added assignment for invrs_tau_wp3_zm in Lscale mode in advance_clubb_core
- Increased length of string variables hoc_v, les_v, and t_variables in src/error.F90 to accomodate tuning for invrs_tau fields
</comment><date>2023-09-05 13:19:07 -0500</date><id>c1f62c5040949404906f8d13ecb9cf7ee88f4ce5</id><msg>Fixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>346643e9a3d430e30182bc4b244f6251fdf50b9e</commitId><timestamp>1693950812000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102

Changes in src/CLUBB_core/mixing_length.F90:
- brunt_vaisala_freq_sqd_mixed is now used to calculate brunt_vaisala_freq_sqd_smth and brunt_vaisala_freq_sqd_clipped instead of brunt_vaisala_freq_sqd
- Removed 0.1 factor for bkgnd term in calculation of invrs_tau_xp2_zm
- Commented out clipping of invrs_tau_xp2_zm to 0.003 and lower out of cloud
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and added a bar chart of column vectors (one per tuning parameter.)

For #910.
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Also adds SWCF_RMSE metric.

For #910.
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Also fixes divide-by-zero warning message in dpMin2Pt plotting code.

For #910.
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For #910.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9d35ffa7e05b85efb23d21700bcf355f007c2b7d</commitId><timestamp>1692308947000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds capability to prescribe (not tune) a parameter
to a value that is different from the default.
The code has not been checked, but it does run and produce plots.

For #910.
</comment><date>2023-08-17 16:49:07 -0500</date><id>9d35ffa7e05b85efb23d21700bcf355f007c2b7d</id><msg>For RegTune, adds capability to prescribe (not tune) a parameter</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>377</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/377/</url></nextBuild><previousBuild><number>375</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/375/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>edccdfbf9c5f8ed7c089bee46e30801098af8841</commitId><timestamp>1692193698000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds color-coded matrix of correlations among parameter vectors.
Also, this commit separates the three-dot panel plot into its own function.

For #910.
</comment><date>2023-08-16 08:48:18 -0500</date><id>edccdfbf9c5f8ed7c089bee46e30801098af8841</id><msg>For RegTune, adds color-coded matrix of correlations among parameter vectors.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>31f76a7219f3ed336cc7b2b1159cae4781e67289</commitId><timestamp>1692200526000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For clarity, renames figures in RegTune.

For #910.
</comment><date>2023-08-16 10:42:06 -0500</date><id>31f76a7219f3ed336cc7b2b1159cae4781e67289</id><msg>For clarity, renames figures in RegTune.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>3ac0cb6b68cff942267f3230f210eaab5aedc182</commitId><timestamp>1692223459000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Creates new function, setUpPreliminaries, in RegTune.
setUpPreliminaries calculates some basic quantities
that are used later.
As part of this refactoring, a number of functions
were moved from analyze_sensitivity_matrix to
set_up_dashboard_inputs.

For #910.
</comment><date>2023-08-16 17:04:19 -0500</date><id>3ac0cb6b68cff942267f3230f210eaab5aedc182</id><msg>Creates new function, setUpPreliminaries, in RegTune.</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>376</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/376/</url></nextBuild><previousBuild><number>374</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/374/</url></previousBuild></build><build 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9324242cc87f0d692e5bc39f32ac50f3be0b928b</commitId><timestamp>1691090871000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds quadratic curves to three-dot plot.

For #910.
</comment><date>2023-08-03 14:27:51 -0500</date><id>9324242cc87f0d692e5bc39f32ac50f3be0b928b</id><msg>For RegTune, adds quadratic curves to three-dot plot.</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9ada7441e588502eeb7f757cd0d618d8803bd08d</commitId><timestamp>1691504471000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, defaults to polynomial fit for sensitivity matrix
and adds observations of sea-level pressure (PSL).

For #910.
</comment><date>2023-08-08 09:21:11 -0500</date><id>9ada7441e588502eeb7f757cd0d618d8803bd08d</id><msg>For RegTune, defaults to polynomial fit for sensitivity matrix</msg><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>b0101dc46f5324451c8273188032bda60d135e41</commitId><timestamp>1691525024000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>In RegTune, normalizes metrics by a user-specified number
rather than the observed value of the metric.

For #910.
</comment><date>2023-08-08 15:03:44 -0500</date><id>b0101dc46f5324451c8273188032bda60d135e41</id><msg>In RegTune, normalizes metrics by a user-specified number</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>375</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/375/</url></nextBuild><previousBuild><number>373</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/373/</url></previousBuild></build><build 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</comment><date>2023-07-29 20:16:55 -0500</date><id>3dbe0a48a7a72173093335aee0a1decee4ed7303</id><msg>Adding wp_coef and wp_coef_zt to acc data statements.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>4739fb54b293d3201087c17e81daa2943f5d7661</commitId><timestamp>1690802652000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, update input netcdf files.

For #910.
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BIT_CHANGING! Added e-folding code for mixed Brunt Vaisala frequency - CLUBB ticket #1069
- Included usage for bv_efold in src/CLUBB_core/advance_helper_module.F90
- Added intent(out) for correction_stability in subroutine calc_correction_stability
- Removed brunt_vaisala_freq_sqd_plus
- Idiot proofed interaction between l_diag_Lscale_from_tau and l_use_invrs_tau_N2_iso
- Moved stat_update_var(invrs_tau_wp3_zm) out of if ( l_diag_Lscale_from_tau )
- Fixed some typos in src/CLUBB_core/stats_zt_module.F90
- Added comment about to input_misc/tuner/README about t_variables adn input/stats/tuning_stats.in
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/Skx_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><affectedPath>src/CLUBB_core/mean_adv.F90</affectedPath><commitId>e42078081e3931d7de83f7a5d0f5dabc96cb9397</commitId><timestamp>1690323761000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Bit changing changes (#1104)

* Moving functions called inside loops to their own 2D subroutines. This is for performance, but is also BIT_CHANGING.

* Correct range of values to calculate for term_dp1_lhs

* Comments and cleanup

* Slight change to Skx_func, this is mathematically equivalent but BIT_CHANGING. This is faster on GPUs, and doesn't seem to have a signficiant impact on CPU performance.

* Introducing wp_coef and wp_coef_zt to reduce needed computations. This changes order of operations, so it is BIT_CHANGING.
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</comment><date>2023-07-20 08:55:35 -0500</date><id>1ab8885573872beb8b590e955b48c1f5dc6b9bca</id><msg>Adds to RegTune a plot of a color-coded normalized sensitivity matrix</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/README.md</affectedPath><commitId>e1a725970256fc9b1c7c2e5f16675bb7d681da8e</commitId><timestamp>1689865497000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Adds hint about installing dash for RegTune
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For #910.
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(#1101)

CLUBB ticket #1098
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* Making all end parallel directives specify end loop

* Replacing last acc declare in a procedure with acc enter/exit data commands

* Removing pure declarations, turns out they dont really improve performance and openmp isn't allowed within them.

* Adding explicit directives to penta_lu and tridiag_lu, as opposed to the previously used kernels directive. Also splitting up a loop to improve GPU performance.

* Splitting up a couple loops for performance reasons.

* Missed one somehow
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is set in the lines immediately below.
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updated Pillow version to resolve related dependabot alerts
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Also updating numpy version to 1.25.1
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* Chaning acc declare statements to acc enter data statement

* Making acc statements more consistent

* Making lapack useable while using openacc. Lapack is still run on the CPU

* Updating setup_clubb_core to now accept clubb_config_flags as an input, and adding warning in case clubb is running with lapack but was compiled with openacc.
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Last commit was BIT_CHANGING:0b0ab3d530bef06eb90bf6dde21b26eb25780214 see https://github.com/larson-group/clubb/pull/1091 for details.
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</comment><date>2023-07-05 14:17:56 -0500</date><id>0e9723d96823a0347ff6ba8d431d95502bb3046c</id><msg>Changing "Fnc" to "fnc" for consistency and easy search.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>0b0ab3d530bef06eb90bf6dde21b26eb25780214</commitId><timestamp>1688611277000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Memory usage optimizations (#1091)

* Fixing merge conflict

* Fixing a bug.

* Restoring correct default flag value

* Undoing changes that push stats variables into pdf_closure. That change may be included in a small future refactoring.

* Making same sclr_dim changes to hydromet_dim
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ticket #1069: (#1092)

- Added tunable parameter bv_efold
- Removed extraneous use statement in src/CLUBB_core/advance_xm_wpxp_module.F90
- Removed obsolete flag l_update_pressure from input/tunable_parameters_Lscale/configurable_model_flags.in
- Changed tmp_calc_min -&gt; tmp_calc in src/CLUBB_core/advance_helper_module.F90
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* Various reductions in data movement

* Bug fix

* Optimizations to fill_holes, this involves precalculating a multiplication an a division, so this is BIT_CHANGING.

* Missed a small part

* Small fix
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</comment><date>2023-06-13 15:30:21 -0500</date><id>d778246e6f0ab92f0f23a100b1c693bc12345db4</id><msg>Moving data statements to outter most parts of clubb and little fix in advance_wp2_wp3 (#1088)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>362</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/362/</url></nextBuild><previousBuild><number>360</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/360/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>2723c75bbfb000b67f641c3e9aa98f3d28517dce</commitId><timestamp>1686267553000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>advance_xp2_xpyp with explicitly managed memory (#1086)

* GPUizing most of advance_clubb_core

* GPUizing most of advance_wp2_wp3 based off Supreeths openacc branch

* Cleanup and small fixes.

* Converting data statement to declare statement to return the return.

* Small changes to prevent data copies

* Initial advance_xp2_xpyp GPUization, adapted from Supreeth's branch, clubb_openacc, to work without managed memory.

* Small cleanup

* Tweaks to reduce data copies

* Small change

* More GPUization and some cleanup

* Final little fixes

* Removing magic logicals
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* Initial commit for advance_windm_edsclrm adapted from Supreeth's branch

* Final fixes

* Accidentally undid fix

* Returning returns
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* GPUizing most of advance_clubb_core

* GPUizing most of advance_wp2_wp3 based off Supreeths openacc branch

* Cleanup and small fixes.

* Converting data statement to declare statement to return the return.

* Small changes to prevent data copies
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</comment><date>2023-05-19 12:47:01 -0500</date><id>df63abfa50aa910d527bded7304761051f71fa1b</id><msg>I added dycoms2_rf01 to the list of cases that could be run.</msg><path><editType>edit</editType><file>run_scripts/convergence_run/convergence_config.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_revall.csh</affectedPath><commitId>2b12091dc37d2ebcca09fa10f1d2b3ccca067d35</commitId><timestamp>1684533029000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I updated the run_cnvg_test_multi_cases_revall.csh script to include
dycoms2_rf01 in the list of cases that are run.
</comment><date>2023-05-19 16:50:29 -0500</date><id>2b12091dc37d2ebcca09fa10f1d2b3ccca067d35</id><msg>I updated the run_cnvg_test_multi_cases_revall.csh script to include</msg><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_revall.csh</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_default.csh</affectedPath><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_baseline.csh</affectedPath><commitId>ecc4f9d209b09d254fe889b25dff1e18e5dca530</commitId><timestamp>1684533905000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Modified run_cnvg_test_multi_cases_default.csh and
run_cnvg_test_multi_cases_baseline.csh for the inclusion of
dycoms2_rf01.
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about how to use the script.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/calendar.F90</affectedPath><affectedPath>src/SILHS/math_utilities.F90</affectedPath><commitId>7304a4ed399e8db8c3778ffb783b937564b85e6c</commitId><timestamp>1683999525000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>making changes to trigger autoudpate for test, these commits do nothing

here is a body to the commit as well
</comment><date>2023-05-13 12:38:45 -0500</date><id>7304a4ed399e8db8c3778ffb783b937564b85e6c</id><msg>making changes to trigger autoudpate for test, these commits do nothing</msg><path><editType>edit</editType><file>src/SILHS/math_utilities.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/calendar.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/calendar.F90</affectedPath><affectedPath>src/SILHS/math_utilities.F90</affectedPath><commitId>c072656f70eec308312cd411b9098d16a0b69932</commitId><timestamp>1684000665000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>Here is another commit that changes nothing

Here is the body
</comment><date>2023-05-13 12:57:45 -0500</date><id>c072656f70eec308312cd411b9098d16a0b69932</id><msg>Here is another commit that changes nothing</msg><path><editType>edit</editType><file>src/SILHS/math_utilities.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/calendar.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/endian.F90</affectedPath><commitId>1c51108c54959fc2146c926a947fb77e2f3229b5</commitId><timestamp>1684001427000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>change to trigger updates

this is the last batch
</comment><date>2023-05-13 13:10:27 -0500</date><id>1c51108c54959fc2146c926a947fb77e2f3229b5</id><msg>change to trigger updates</msg><path><editType>edit</editType><file>src/CLUBB_core/endian.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/calc_pressure.F90</affectedPath><commitId>6d00bf5998d8853274782192b3a97d00e045e80a</commitId><timestamp>1684001497000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>change to calc pressure to trigger autoupdate

body
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</comment><date>2023-05-09 01:03:00 -0500</date><id>8d363835501ec82b96b7d6ed8c3cb162d70ac787</id><msg>I am beginning a section on running the convergence tests in the README.</msg><path><editType>edit</editType><file>README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_revall.csh</affectedPath><commitId>4218a86cb398df01513f3b7b88731af9fdc0e53a</commitId><timestamp>1683669769000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Update run_cnvg_test_multi_cases_revall.csh

Remove the 6th refinement, which is too close in grid spacing to the 7th and reference refinement.
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Remove the 6th refinement, which is too close in grid spacing to the 7th and reference refinement.
</comment><date>2023-05-09 17:08:40 -0500</date><id>6eff64f255aafd546ceb594733ea1817a0274149</id><msg>Update run_cnvg_test_multi_cases_default.csh</msg><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_default.csh</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_baseline.csh</affectedPath><commitId>949fb9dcd752ed0edd1c2e5720e34c49929c0375</commitId><timestamp>1683670163000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Update run_cnvg_test_multi_cases_baseline.csh

Remove the 6th refinement, which is too close in grid spacing to the 7th and reference refinement.
</comment><date>2023-05-09 17:09:23 -0500</date><id>949fb9dcd752ed0edd1c2e5720e34c49929c0375</id><msg>Update run_cnvg_test_multi_cases_baseline.csh</msg><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_baseline.csh</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>1efa8cddfb173eec752a7b80926afebcc353ab84</commitId><timestamp>1683673118000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Update README

Updated the description of the convergence tests.
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This is another commit that changes absolutely nothing, and only exists to test autocommit changes
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I have been having alot of trouble recreating the output that is occuring in the host repos in my test, so I want to add it here to see if it works
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Also fixing bug that shows up when l_brunt_vaisala_freq_moist = T.  This
will hopefully help to get some failing CAM tests running again.

See #1074 and PR #1075 for info.

This is BIT_CHANGING for all cases due to the new tunable parameter value.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><commitId>9c47857c79559576598918989ef1ce82a72918a1</commitId><timestamp>1683080989000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Calc sfc varnce GPUization (#1081)

* Initial loop push for calc_sfc_varnce

* BIT_CHANGING:3b086a40085284aa49c71d32c001d20153a8ddb4 the last commit is bit changing for only some cases and only when using higher than -02 optimization. uf min seems to be the first calculation that starting to differ bitwise. Using the check_multicol script confirms the differences are small.

* Adding a tweak to surface values in the extra columns. This helped me check calc_sfc_varance, since we were not changing any arrays that would've affected calculations there.

* Small optimization, making wstar and ustar2 scalars.

* GPUizing calc_sfc_varnce

* Removing conditional around some stats calls. Now we will always save sfc values to stats, because this will change stats files when gr%zm(i,1) &gt; sfc_elevation, this is potentially BIT_CHANGING.

* Merging with latest clubb changes and making work on GPUs again.

This contained 2 commits that are BIT_CHANGING in some situations.
</comment><date>2023-05-02 21:29:49 -0500</date><id>9c47857c79559576598918989ef1ce82a72918a1</id><msg>Calc sfc varnce GPUization (#1081)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sfc_varnce_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>349</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/349/</url></nextBuild><previousBuild><number>347</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/347/</url></previousBuild></build><build 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupBase.py</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_zm_module.F90</affectedPath><commitId>f0d1d1cb3d182f220a2bc78e2ea389ca8a9a3c71</commitId><timestamp>1682952212000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Making CLUBB's splatting scheme implicit and smoother (#1075)

* Introducing rough implicit splatting scheme into CLUBB.  Not yet implicit for wp3.

* Implementing implicit splatting for wp3.

* Further improvements to implicit splatting code, including

- smoothing of the BV freq used for splatting
- adding a new variable 'bv_freq_sqd_splat' to stats
- add the new variable to pyplotgen standard output

See PR #1075 and issue #994.

* Some cleanup.

* More cleanup, and adding comments.

* More comments.

* Updating implicit splatting scheme.

* Updates to resolve PR requests.

Updates associated with implicit splatting will be BIT_CHANGING.
</comment><date>2023-05-01 08:43:32 -0600</date><id>f0d1d1cb3d182f220a2bc78e2ea389ca8a9a3c71</id><msg>Making CLUBB's splatting scheme implicit and smoother 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</comment><date>2023-04-30 13:10:14 -0500</date><id>898a66bd5d85618c9ec386798ea64722285b6925</id><msg>Updates to make the convergence tests run on Anvil.</msg><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_baseline.csh</file></path><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_revall.csh</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_ifort_anvil.bash</file></path><path><editType>edit</editType><file>run_scripts/convergence_run/run_cnvg_test_multi_cases_default.csh</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><commitId>6242bef56ec8f83eb6296133f8a7e6b637997629</commitId><timestamp>1682909659000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>adding an update that changes nothing and is just a test for the autoupdate script
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</comment><date>2023-04-05 09:54:02 -0500</date><id>ec5eb04a57d416323f4f67bcacb242246816d5fd</id><msg>changing tunable_parameters</msg><path><editType>edit</editType><file>input/tunable_parameters/tunable_parameters.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/tunable_parameters/tunable_parameters.in</affectedPath><commitId>3d6022f3fa683a1dcd6d42a6e281b6e25ac9d7f4</commitId><timestamp>1680706472000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>changing tunable_parameters
</comment><date>2023-04-05 09:54:32 -0500</date><id>3d6022f3fa683a1dcd6d42a6e281b6e25ac9d7f4</id><msg>changing tunable_parameters</msg><path><editType>edit</editType><file>input/tunable_parameters/tunable_parameters.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/SILHS/math_utilities.F90</affectedPath><commitId>e66210ad86254314f1855beee0fa43f947ce4754</commitId><timestamp>1682273667000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/cernikt</absoluteUrl><fullName>cernikt</fullName></author><authorEmail>tjcernik@uwm.edu</authorEmail><comment>This commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/calc_pressure.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/interpolation.F90</affectedPath><affectedPath>src/CLUBB_core/sigma_sqd_w_module.F90</affectedPath><affectedPath>src/CLUBB_core/Skx_module.F90</affectedPath><commitId>4205f9567c8864f9caa6d8d20286543b490db428</commitId><timestamp>1682105140000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>GPUizing Various Small Routines (#1080)

* GPUizing compute_Cx_fnc_Richardson

* GPUizing term_wp2_splat and term_wp3_splat

* GPUizing xp3_LG_2005_ansatz

* GPUizing calculate_thvm

* GPUizing pvertinterp even though I don't think we care about the l_do_expldiff_rtm_thlm flag

* Fixing bug. Setting l_do_expldiff_rtm_thlm causes us to use edsclrm, so we need to also ensure that edsclrm &gt; 1 (1 because it uses a edsclr_dim-1 index)

* Pushing some data statements up the call tree.
</comment><date>2023-04-21 14:25:40 -0500</date><id>4205f9567c8864f9caa6d8d20286543b490db428</id><msg>GPUizing Various Small Routines 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/G_unit_test_types/smooth_heaviside_tests.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>a883cf53b5eff3476a2c5e65dcd5a4093417ff18</commitId><timestamp>1681924858000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Lscale GPUization (#1079)

* Making 2 new functions zm2zt2zm and zt2zm2zt to handle smoothing by interpolation. Replaced the spots in clubb I know that uses this to smooth things. This is just a nice to have and could allow for easy optimizations in the future by inlining the interpolations. All cases BFB on CPU and GPU, checked all relevant options too.

* GPUizing diagnose_Lscale_from_tau

* Removing some unused variables.

* Moving acc data statements from calc_Lscale_directly up to advance_clubb_core.

* Removing an unused variable.

* GPUizing the l_smooth_min_max option.

* GPUizing l_avg_Lscale

* Changes to variable names to avoid gross long names only used once.
</comment><date>2023-04-19 12:20:58 -0500</date><id>a883cf53b5eff3476a2c5e65dcd5a4093417ff18</id><msg>Lscale GPUization (#1079)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/smooth_heaviside_tests.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><commitId>e7911cd16198153e0a3ca084bd813c0dfad1b4eb</commitId><timestamp>1681926818000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>gfortran does not like intent(out) specifiers for functions.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_baseline.csh</affectedPath><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases.csh</affectedPath><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_default.csh</affectedPath><affectedPath>run_scripts/convergence_run/run_cnvg_test_multi_cases_revall.csh</affectedPath><affectedPath>run_scripts/convergence_run/convergence_config.py</affectedPath><commitId>4f762ff2971a094b45b591719bc9e28d3de9d06b</commitId><timestamp>1681746202000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>update the scripts for convergence test

Originally committed by Shixuan.
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</comment><date>2023-04-06 16:23:07 -0500</date><id>6d1ddfc80e3c21483a2a90d03c0f5581c0dd7dff</id><msg>bug fixes for the autocommit message maker code</msg><path><editType>edit</editType><file>utilities/autocommit_message_maker/autocommit_message_maker.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/parameters_model.F90</affectedPath><commitId>0eca2146266b52e407a4feac444e1be8923fa3c4</commitId><timestamp>1680842443000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. This is what broke the clubb_openmp_gfortran_test.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><commitId>4b16d833e86ad23ef6ea81de67c38c596ebccd25</commitId><timestamp>1680538287000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>This commit contains code changes to implement modifications on limiters in three places:

1. remove the limiters in denominator of equation for
   brunt_vaisala_freq_sqd_smth, which affects the computed
   eddy dissipation time scale in turbulent fluxes (wpxp).
   (in mixing_length.F90)

2. reduce the threshold values of limiters in the equation
   for richardson number (sqrt_Ri_zm)
   (in mixing_length.F90)

3. introduce the smoothed max/min function for limiters in
   equation of Cx_fnc_Richardson.
   (in advance_helper_module.F90).

After the modification, we also apply a zt2m(zm2zt) smoothing
on the calculated quantities. These modifications are found to
be benificial for improving solution convergence in CLUBB-SCM

The code changes are controlled by a newly introduced flag named
"l_modify_limiters_for_cnvg_test", which is set to .false. (meaning that
the modificaitons on limiters is turned off) by default.

Originally committed by Shixuan.
</comment><date>2023-04-03 11:11:27 -0500</date><id>4b16d833e86ad23ef6ea81de67c38c596ebccd25</id><msg>This commit contains code changes to implement modifications on limiters in three places:</msg><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/turbulent_adv_pdf.F90</affectedPath><affectedPath>src/CLUBB_core/matrix_solver_wrapper.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/CLUBB_core/mean_adv.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/parameters_model.F90</affectedPath><affectedPath>src/CLUBB_core/diffusion.F90</affectedPath><commitId>49ec5990089b7f9728eb6707a2b653bbeca94c81</commitId><timestamp>1680716686000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Advance xm wpxp gpuization (#1077)

* Initial commit for GPUizing advance_xm_wpxp.

* GPUizing fill_holes_vertical

* Adding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.

* Small GPU fixes (#1076)

* Fixing small things that I caught by adding the default(present) onto acc loops.

* Moving default(present) to the end because it looks nicer there.

* Adding default(present) to all acc loop statements. Also adding azt to a copyin statement, which was missed previously. All BFB.

* Incemental update, not well tested yet.

* Removing some copies and making the sclr_dim change.

* Fixing a bug that only seemed detectable with astex_a209. We need to pass only single arrays to functions, calling ddzt( nz, ngrdcol, gr, rho_ds_zt * K_zt_nu ) was resulting in rho_ds_zt * K_zt_nu being evluated on the CPU, but the values were only valid on the GPU. So we need to evaluate that expression on the GPU, save it into an array (currently K_zt_nu_tmp), then pass that to ddzt.

* GPUizing calc_turb_adv_range

* GPUizing mono_flux_limiter

* Cleaning up data statments and a couple other things.

* Updated for some different options.

* More updates needed for various options.

* Reverting accidental flag change

* Should be the final changes, all options tested now.

* Replacing some comments in monoflux limiter, and also modifying it to make it BFB on CPUs. Also changing incorrect error conditions on tridiag.

* Adding max_x_allowable to update host statement, missed previous.

* Properly naming tmp variables and variables calculated from ddzt and ddzm start with ddzt_ and ddzm_.

* Replacing constants with named ones from constants_clubb.

* Replacing hard coded numbers in lhs variables representing the number of bands they contain with fortran parameters.
</comment><date>2023-04-05 12:44:46 -0500</date><id>49ec5990089b7f9728eb6707a2b653bbeca94c81</id><msg>Advance xm wpxp gpuization (#1077)</msg><path><editType>edit</editType><file>src/CLUBB_core/diffusion.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/parameters_model.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mean_adv.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/matrix_solver_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/turbulent_adv_pdf.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/fill_holes.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/diff_netcdf_outputs.py</affectedPath><affectedPath>compile/config/linux_x86_64_nvhpc_gpu.bash</affectedPath><commitId>f20b355f2ce4e686d8f3392ad148341f08fd6acc</commitId><timestamp>1680726531000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small improvements to diff_netcdf_outputs.py, removing reliance on ncdiff, now it is entirely in python. Cleaning up linux_x86_64_nvhpc_gpu.bash, removing outdated parts, improving default parallel compilation, changing pgfortran to nvfortran.
</comment><date>2023-04-05 15:28:51 -0500</date><id>f20b355f2ce4e686d8f3392ad148341f08fd6acc</id><msg>Small improvements to diff_netcdf_outputs.py, removing reliance on ncdiff, now it is entirely in python. Cleaning up linux_x86_64_nvhpc_gpu.bash, removing outdated parts, improving default parallel compilation, changing pgfortran to nvfortran.</msg><path><editType>edit</editType><file>run_scripts/diff_netcdf_outputs.py</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc_gpu.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><commitId>c0fb204097dab9c58399ebd3526835db482899cc</commitId><timestamp>1680733435000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.
</comment><date>2023-04-05 17:23:55 -0500</date><id>c0fb204097dab9c58399ebd3526835db482899cc</id><msg>Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><commitId>34329990202f44999b237263136111b0086963c4</commitId><timestamp>1680734063000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Fixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.
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Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.</msg><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>340</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/340/</url></nextBuild><previousBuild><number>338</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/338/</url></previousBuild></build><build 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><commitId>475d569931a16ce1187c26757a0913e53c62abe5</commitId><timestamp>1680247062000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Code changes to implement modificiations on wp3 clippings
This commit contains code changes to implement modifications of skewness
clippings on wp3 in src/CLUBB_core/clip_explicit.F90. The default method attempts
to apply smaller (larger) clippings below (above) 100m AGL level, which
can cause a discontinuities around 100m AGL level. This clippings is
found to trigger sawthooth oscillations in wp3 when linear diffusion is
used. Such swathooth oscillations are eleminated if a smoothed Heaviside
function is introduced to obtain a smooth transition of clippings at
around 100m AGL level. The changes is necessary to obtain the first
order convergence in CLUBB-SCM when lienar diffusion is used.

Previously committed by Shixuan.
</comment><date>2023-03-31 02:17:42 -0500</date><id>475d569931a16ce1187c26757a0913e53c62abe5</id><msg>Code changes to implement modificiations on wp3 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GPU fixes (#1076)

* Fixing small things that I caught by adding the default(present) onto acc loops.

* Moving default(present) to the end because it looks nicer there.
</comment><date>2023-03-24 21:30:34 -0500</date><id>d6db663fb3c7cd893d3d68786c486254e8a28ebb</id><msg>Small GPU fixes 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I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.
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Also BIT_CHANGING:fb4556e4cc4cb3d4b6df3520370a28a824f357ef for configs where l_use_cloud_cover = .false., which means I was wrong about this ever not being bit changing, so I must've either only tested with l_use_cloud_cover = .true. or only tested the multicol diffs when I put compute_cloud_cover inside the if statement.
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Also BIT_CHANGING:fb4556e4cc4cb3d4b6df3520370a28a824f357ef for configs where l_use_cloud_cover = .false., which means I was wrong about this ever not being bit changing, so I must've either only tested with l_use_cloud_cover = .true. or only tested the multicol diffs when I put compute_cloud_cover inside the if statement.</msg><path><editType>edit</editType><file>README</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>333</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/333/</url></nextBuild><previousBuild><number>331</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/331/</url></previousBuild></build><color>disabled</color><firstBuild _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action 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* Removing unneccesary acc declare statements.

* Removing use of acc routine in favor of new 1D array routine for smooth_max.

* The new tmp_calc_ngrdcol should be copied regardless of flag

* tmp_calc_ngrdcol also needs to be deleted unconditionally.

* Making separate conditional acc copy for edsclrdim variables.

* Adding ifdefs around prints inside of openacc kernel

* Making erf_cache and exp_cache scalars, there was no need for them to be arrays.

* Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc

* Removed files
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* Removing unneccesary acc declare statements.

* Removing use of acc routine in favor of new 1D array routine for smooth_max.

* The new tmp_calc_ngrdcol should be copied regardless of flag

* tmp_calc_ngrdcol also needs to be deleted unconditionally.

* Making separate conditional acc copy for edsclrdim variables.

* Adding ifdefs around prints inside of openacc kernel

* Making erf_cache and exp_cache scalars, there was no need for them to be arrays.

* Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc

* Removed files
</comment><date>2024-02-15 20:58:05 -0600</date><id>90f3976ec42f513108090135011800a1b9301734</id><msg>Small acc tweaks 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/constants_clubb.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>90f3976ec42f513108090135011800a1b9301734</commitId><timestamp>1708052285000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Small acc tweaks (#1144)

* Removing unneccesary acc declare statements.

* Removing use of acc routine in favor of new 1D array routine for smooth_max.

* The new tmp_calc_ngrdcol should be copied regardless of flag

* tmp_calc_ngrdcol also needs to be deleted unconditionally.

* Making separate conditional acc copy for edsclrdim variables.

* Adding ifdefs around prints inside of openacc kernel

* Making erf_cache and exp_cache scalars, there was no need for them to be arrays.

* Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc

* Removed files
</comment><date>2024-02-15 20:58:05 -0600</date><id>90f3976ec42f513108090135011800a1b9301734</id><msg>Small acc tweaks 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some files have tabs in them, this broke my previous sed commands in various spots.
</comment><date>2024-02-01 13:46:04 -0600</date><id>b5ee3141be816d210f2942609e2889e2ddfc5b5a</id><msg>Some files have tabs in them, this broke my previous sed commands in various spots.</msg><path><editType>edit</editType><file>input/case_setups/nov11_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/bomex_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_97_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/fire_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/wangara_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf01_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_0003_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/nov11_altocu_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/atex_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/rico_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_forcings.in</file><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_class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/convert_acc_to_omp.bash</affectedPath><commitId>5d5c3fc2bbc789e680c668a92865d405828bb73b</commitId><timestamp>1706816883000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.
</comment><date>2024-02-01 13:48:03 -0600</date><id>5d5c3fc2bbc789e680c668a92865d405828bb73b</id><msg>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.</msg><path><editType>edit</editType><file>compile/convert_acc_to_omp.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/std_atmosphere/atmosphere.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/astex_a209_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/lba_sounding.in</affectedPath><commitId>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</commitId><timestamp>1706817691000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some more places we need changes.
</comment><date>2024-02-01 14:01:31 -0600</date><id>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</id><msg>Some more places we need changes.</msg><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/std_atmosphere/atmosphere.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/jun25_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/case_setups/arm_97_forcings.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_night_forcings.in</affectedPath><affectedPath>input/case_setups/nov11_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/arm_0003_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_nov02_forcings.in</affectedPath><affectedPath>input/case_setups/mpace_a_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cobra_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_oct14_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><commitId>0959fd13263a987aa267187eee415f7cb9b1da5a</commitId><timestamp>1706818453000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Hopefully the final sneaky error
</comment><date>2024-02-01 14:14:13 -0600</date><id>0959fd13263a987aa267187eee415f7cb9b1da5a</id><msg>Hopefully the final sneaky 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some files have tabs in them, this broke my previous sed commands in various spots.
</comment><date>2024-02-01 13:46:04 -0600</date><id>b5ee3141be816d210f2942609e2889e2ddfc5b5a</id><msg>Some files have tabs in them, this broke my previous sed commands in various spots.</msg><path><editType>edit</editType><file>input/case_setups/nov11_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/bomex_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_97_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/fire_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/wangara_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/dycoms2_rf01_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_0003_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/mc3e_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_a_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/nov11_altocu_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/atex_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/rico_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_night_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_0003_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/mpace_b_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls2_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/jun25_altocu_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_nov02_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/nov11_altocu_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_97_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/clex9_oct14_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_forcings_code/generate_forcing_file.F90</file></path><path><editType>edit</editType><file>input/case_setups/arm_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cobra_sfc.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/ADDING_A_NEW_CASE</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/bomex_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/neutral_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/arm_3year_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_ozone_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_sounding.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/convert_acc_to_omp.bash</affectedPath><commitId>5d5c3fc2bbc789e680c668a92865d405828bb73b</commitId><timestamp>1706816883000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.
</comment><date>2024-02-01 13:48:03 -0600</date><id>5d5c3fc2bbc789e680c668a92865d405828bb73b</id><msg>Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.</msg><path><editType>edit</editType><file>compile/convert_acc_to_omp.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/std_atmosphere/atmosphere.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s11_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s12_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/astex_a209_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/lba_sounding.in</affectedPath><commitId>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</commitId><timestamp>1706817691000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Some more places we need changes.
</comment><date>2024-02-01 14:01:31 -0600</date><id>34f6783b8a903a4d1cb7311ad4ac06d78ce4541a</id><msg>Some more places we need changes.</msg><path><editType>edit</editType><file>input/case_setups/cgils_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/std_atmosphere/atmosphere.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/gabls3_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/astex_a209_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/twp_ice_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/lba_sounding.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s12_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s6_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cloud_feedback_s12_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s11_p2k_forcings.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_p2k_forcings.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/case_setups/jun25_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_forcings.in</affectedPath><affectedPath>input/case_setups/arm_97_forcings.in</affectedPath><affectedPath>input/case_setups/twp_ice_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_forcings.in</affectedPath><affectedPath>input/case_setups/gabls3_night_forcings.in</affectedPath><affectedPath>input/case_setups/nov11_altocu_forcings.in</affectedPath><affectedPath>input/case_setups/arm_0003_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_nov02_forcings.in</affectedPath><affectedPath>input/case_setups/mpace_a_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s11_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/cobra_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s6_forcings.in</affectedPath><affectedPath>input/case_setups/cloud_feedback_s12_p2k_forcings.in</affectedPath><affectedPath>input/case_setups/clex9_oct14_forcings.in</affectedPath><affectedPath>input/case_setups/cgils_s6_p2k_forcings.in</affectedPath><commitId>0959fd13263a987aa267187eee415f7cb9b1da5a</commitId><timestamp>1706818453000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Hopefully the final sneaky error
</comment><date>2024-02-01 14:14:13 -0600</date><id>0959fd13263a987aa267187eee415f7cb9b1da5a</id><msg>Hopefully the final sneaky 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/constants_clubb.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>90f3976ec42f513108090135011800a1b9301734</commitId><timestamp>1708052285000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Small acc tweaks (#1144)

* Removing unneccesary acc declare statements.

* Removing use of acc routine in favor of new 1D array routine for smooth_max.

* The new tmp_calc_ngrdcol should be copied regardless of flag

* tmp_calc_ngrdcol also needs to be deleted unconditionally.

* Making separate conditional acc copy for edsclrdim variables.

* Adding ifdefs around prints inside of openacc kernel

* Making erf_cache and exp_cache scalars, there was no need for them to be arrays.

* Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc

* Removed files
</comment><date>2024-02-15 20:58:05 -0600</date><id>90f3976ec42f513108090135011800a1b9301734</id><msg>Small acc tweaks (#1144)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/pdf_closure_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sfc_varnce_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/constants_clubb.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><previousBuild><number>430</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_backwards_compatibility_gfortran_test/430/</url></previousBuild></lastUnsuccessfulBuild><nextBuildNumber>432</nextBuildNumber><property _class='org.jenkinsci.plugins.workflow.job.properties.PipelineTriggersJobProperty'></property><concurrentBuild>true</concurrentBuild><disabled>true</disabled><inQueue>false</inQueue><resumeBlocked>false</resumeBlocked></workflowJob>