Started by an SCM change
Obtained jenkins_tests/bc_tolerance_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /home/jenkins/workspace/clubb_bc_tolerance_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials THe key used by the system for the tests
 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision bea4ae0588cdc6758927c5c55cd7edcfb8c48c12 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f bea4ae0588cdc6758927c5c55cd7edcfb8c48c12 # timeout=10
Commit message: "This commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39).  Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before.  I've also updated the comments to remove, where appropriate, references to "C_5" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up)."
 > git rev-list --no-walk a353e64c99800af65fc1cfc13142eb5cdff63a00 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Compile)
[Pipeline] sh
+ compile/compile.bash
......................................................................................................................................................................... Make.clubb_lapack is ready.
............................................................................... Make.clubb_param is ready.
......................... Make.clubb_bugsrad is ready.
... Make.microphys_utils is ready.
..... Make.clubb_parabolic is ready.
.............. Make.clubb_KK_microphys is ready.
................................................. Make.clubb_coamps is ready.
... Make.clubb_morrison is ready.
... Make.clubb_gfdlact is ready.
............. Make.silhs is ready.
................................................................. Make.clubb_other is ready.
... Make.clubb_standalone is ready.
... Make.clubb_thread_test is ready.
............ Make.clubb_tuner is ready.
... Make.jacobian is ready.
............. Make.G_unit_tests is ready.
... Make.int2txt is ready.
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_param
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_gfdlact
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/advance_xp2_xpyp_module.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/advance_wp2_wp3_module.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90
/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23:

                hydromet, &                                          ! Unused
                       1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/clubb_api_module.F90
ar rv /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib/libclubb_param.a mono_flux_limiter.o pdf_closure_module.o clubb_api_module.o Nc_Ncn_eqns.o stats_lh_zt_module.o adg1_adg2_3d_luhar_pdf.o calc_pressure.o advance_clubb_core_module.o interpolation.o error_code.o output_grads.o saturation.o hydromet_pdf_parameter_module.o stats_type.o index_mapping.o diffusion.o calendar.o parameters_model.o advance_wp2_wp3_module.o stats_rad_zm_module.o stats_clubb_utilities.o stats_sfc_module.o advance_helper_module.o fill_holes.o stat_file_module.o corr_varnce_module.o numerical_check.o diagnose_correlations_module.o parameters_tunable.o output_netcdf.o constants_clubb.o sponge_layer_damping.o stats_rad_zt_module.o new_tsdadg_pdf.o surface_varnce_module.o mean_adv.o stats_variables.o input_reader.o advance_xp3_module.o array_index.o model_flags.o input_names.o code_timer_module.o new_hybrid_pdf_main.o lapack_wrap.o Skx_module.o LY93_pdf.o advance_windm_edsclrm_module.o stats_zm_module.o pos_definite_module.o grid_class.o precipitation_fraction.o pdf_utilities.o T_in_K_module.o stats_zt_module.o file_functions.o advance_xm_wpxp_module.o mixing_length.o lapack_interfaces.o clubb_precision.o calc_roots.o endian.o mt95.o new_hybrid_pdf.o setup_clubb_pdf_params.o clip_semi_implicit.o advance_xp2_xpyp_module.o matrix_operations.o parameter_indices.o turbulent_adv_pdf.o stats_lh_sfc_module.o clip_explicit.o new_pdf_main.o new_pdf.o stats_type_utilities.o pdf_parameter_module.o sigma_sqd_w_module.o
r - mono_flux_limiter.o
r - pdf_closure_module.o
r - clubb_api_module.o
r - Nc_Ncn_eqns.o
r - stats_lh_zt_module.o
r - adg1_adg2_3d_luhar_pdf.o
r - calc_pressure.o
r - advance_clubb_core_module.o
r - interpolation.o
r - error_code.o
r - output_grads.o
r - saturation.o
r - hydromet_pdf_parameter_module.o
r - stats_type.o
r - index_mapping.o
r - diffusion.o
r - calendar.o
r - parameters_model.o
r - advance_wp2_wp3_module.o
r - stats_rad_zm_module.o
r - stats_clubb_utilities.o
r - stats_sfc_module.o
r - advance_helper_module.o
r - fill_holes.o
r - stat_file_module.o
r - corr_varnce_module.o
r - numerical_check.o
r - diagnose_correlations_module.o
r - parameters_tunable.o
r - output_netcdf.o
r - constants_clubb.o
r - sponge_layer_damping.o
r - stats_rad_zt_module.o
r - new_tsdadg_pdf.o
r - surface_varnce_module.o
r - mean_adv.o
r - stats_variables.o
r - input_reader.o
r - advance_xp3_module.o
r - array_index.o
r - model_flags.o
r - input_names.o
r - code_timer_module.o
r - new_hybrid_pdf_main.o
r - lapack_wrap.o
r - Skx_module.o
r - LY93_pdf.o
r - advance_windm_edsclrm_module.o
r - stats_zm_module.o
r - pos_definite_module.o
r - grid_class.o
r - precipitation_fraction.o
r - pdf_utilities.o
r - T_in_K_module.o
r - stats_zt_module.o
r - file_functions.o
r - advance_xm_wpxp_module.o
r - mixing_length.o
r - lapack_interfaces.o
r - clubb_precision.o
r - calc_roots.o
r - endian.o
r - mt95.o
r - new_hybrid_pdf.o
r - setup_clubb_pdf_params.o
r - clip_semi_implicit.o
r - advance_xp2_xpyp_module.o
r - matrix_operations.o
r - parameter_indices.o
r - turbulent_adv_pdf.o
r - stats_lh_sfc_module.o
r - clip_explicit.o
r - new_pdf_main.o
r - new_pdf.o
r - stats_type_utilities.o
r - pdf_parameter_module.o
r - sigma_sqd_w_module.o
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_lapack
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_bugsrad
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.microphys_utils
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_parabolic
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_coamps
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_KK_microphys
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_morrison
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2  -c	../src/Morrison_microphys/module_mp_graupel.F90
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.silhs
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
ar rv /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib/libclubb_morrison.a module_mp_graupel.o
r - module_mp_graupel.o
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_other
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c	../src/morrison_microphys_module.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c	../src/microphys_init_cleanup.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c	../src/microphys_driver.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c	../src/clubb_driver.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c	../src/error.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c -I../src	../src/enhanced_simann.F90
ar rv /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib/libclubb_other.a arm_97.o cloud_feedback.o parameters_microphys.o silhs_category_variance_module.o gabls2.o error.o clex9_oct14.o ice_dfsn_module.o wangara.o stat_file_utils.o clubb_model_settings.o lba.o jun25.o spec_hum_to_mixing_ratio.o arm.o mixed_moment_PDF_integrals.o microphys_driver.o clex9_nov02.o arm_0003.o enhanced_simann.o extended_atmosphere_module.o clubb_driver.o input_grads.o gfdl_activation.o extrapolation.o fire.o input_netcdf.o mpace_a.o bomex.o coamps_microphys_driver_module.o rico.o rad_lwsw_module.o bugsrad_driver.o cloud_sed_module.o sounding.o time_dependent_input.o morrison_microphys_module.o gabls3.o simple_rad_module.o estimate_scm_microphys_module.o quicksort.o gabls3_night.o astex_a209.o dycoms2_rf02.o twp_ice.o advance_microphys_module.o atex.o lh_microphys_driver_module.o hydrostatic_module.o mpace_b.o KK_microphys_module.o surface_flux.o soil_vegetation.o arm_3year.o parameters_radiation.o microphys_init_cleanup.o diag_ustar_module.o input_interpret.o cobra.o input_fields.o dycoms2_rf01.o nov11.o cos_solar_zen_module.o
r - arm_97.o
r - cloud_feedback.o
r - parameters_microphys.o
r - silhs_category_variance_module.o
r - gabls2.o
r - error.o
r - clex9_oct14.o
r - ice_dfsn_module.o
r - wangara.o
r - stat_file_utils.o
r - clubb_model_settings.o
r - lba.o
r - jun25.o
r - spec_hum_to_mixing_ratio.o
r - arm.o
r - mixed_moment_PDF_integrals.o
r - microphys_driver.o
r - clex9_nov02.o
r - arm_0003.o
r - enhanced_simann.o
r - extended_atmosphere_module.o
r - clubb_driver.o
r - input_grads.o
r - gfdl_activation.o
r - extrapolation.o
r - fire.o
r - input_netcdf.o
r - mpace_a.o
r - bomex.o
r - coamps_microphys_driver_module.o
r - rico.o
r - rad_lwsw_module.o
r - bugsrad_driver.o
r - cloud_sed_module.o
r - sounding.o
r - time_dependent_input.o
r - morrison_microphys_module.o
r - gabls3.o
r - simple_rad_module.o
r - estimate_scm_microphys_module.o
r - quicksort.o
r - gabls3_night.o
r - astex_a209.o
r - dycoms2_rf02.o
r - twp_ice.o
r - advance_microphys_module.o
r - atex.o
r - lh_microphys_driver_module.o
r - hydrostatic_module.o
r - mpace_b.o
r - KK_microphys_module.o
r - surface_flux.o
r - soil_vegetation.o
r - arm_3year.o
r - parameters_radiation.o
r - microphys_init_cleanup.o
r - diag_ustar_module.o
r - input_interpret.o
r - cobra.o
r - input_fields.o
r - dycoms2_rf01.o
r - nov11.o
r - cos_solar_zen_module.o
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_standalone
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_tuner
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.jacobian
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.G_unit_tests
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.int2txt
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	../src/jacobian.F90
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	../src/clubb_standalone.F90
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_thread_test
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	../src/G_unit_test_types/tuner_tests.F90
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	../src/clubb_thread_test.F90
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2  -c	../src/clubb_tuner.F90
gfortran clubb_standalone.o -o /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../bin/clubb_standalone  -L/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
gfortran clubb_thread_test.o -o /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../bin/clubb_thread_test  -L/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	../src/G_unit_tests.F90
gfortran mu_sigma_hm_tests.o tuner_tests.o hole_filling_tests.o KK_integrals_tests.o spurious_source_test.o silhs_category_test.o corr_cholesky_mtx_tests.o G_unit_tests.o pdf_parameter_tests.o Nc_Ncn_test.o read_corr_mtx_test.o -o /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../bin/G_unit_tests  -L/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
gfortran jacobian.o -o /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../bin/jacobian  -L/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
gfortran ran_state.o amoeba.o ran1_v.o nrtype.o amebsa.o nr.o nrutil.o clubb_tuner.o ran1_s.o -o /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../bin/clubb_tuner  -L/home/jenkins/workspace/clubb_bc_tolerance_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
python ../utilities/check_for_missing_threadprivate.py ../src/CLUBB_core/ ../src/SILHS/
check_for_missing_threadprivate.py has begun.
check_for_missing_threadprivate.py passed.
perl ../utilities/CLUBBStandardsCheck.pl ../src/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/CLUBB_core/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/Benchmark_cases/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Configure Clubb)
[Pipeline] sh
+ bash -c 'cp input/tunable_parameters_compatible_r8029/* input/tunable_parameters'
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Clubb)
[Pipeline] sh
+ bash -c 'echo bomex > run_scripts/RUN_CASES'
+ bash -c 'echo dycoms2_rf01 >> run_scripts/RUN_CASES'
+ run_scripts/run_scm_all.bash

Performing standard run

Running bomex
#2  0x7f9ecc9b917d in ???
#3  0x7f9eccbb7673 in ???
#4  0x7f9eccbc05c7 in ???
#5  0x7f9eccbc07e8 in ???
#6  0x568f3d in __parameters_tunable_MOD_read_parameters
	at /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/parameters_tunable.F90:1337
#7  0x402af8 in clubb_standalone
	at ../src/clubb_standalone.F90:53
#8  0x4029c6 in main
	at ../src/clubb_standalone.F90:11
Running dycoms2_rf01
#2  0x7f435ecc817d in ???
#3  0x7f435eec6673 in ???
#4  0x7f435eecf5c7 in ???
#5  0x7f435eecf7e8 in ???
#6  0x568f3d in __parameters_tunable_MOD_read_parameters
	at /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/parameters_tunable.F90:1337
#7  0x402af8 in clubb_standalone
	at ../src/clubb_standalone.F90:53
#8  0x4029c6 in main
	at ../src/clubb_standalone.F90:11
bomex failure
dycoms2_rf01 failure
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Check output against tolerance)
Stage "Check output against tolerance" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Cleanup)
Stage "Cleanup" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE