Started by an SCM change
Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 1d2996e43e6b32cb4cbc77931302a225c442888e (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 1d2996e43e6b32cb4cbc77931302a225c442888e # timeout=10
Commit message: "Missed some wrf changes"
 > git rev-list --no-walk 52de37f932acbfdda066610e31a8eacff0e4eb72 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
Directory 1 is 1d2996e43e6b32cb4cbc77931302a225c442888e
Directory 2 is 52de37f932acbfdda066610e31a8eacff0e4eb72
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']

###DIFFING arm netCDF (*.nc) files###
>The linux diff detected differences in arm_stats.nc<
>>No differences detected in the common fields in file arm_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case arm.<<<
**********************************************************************************************************
###DIFFING cobra netCDF (*.nc) files###
>The linux diff detected differences in cobra_stats.nc<
>>No differences detected in the common fields in file cobra_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case cobra.<<<
**********************************************************************************************************
###DIFFING gabls3 netCDF (*.nc) files###
>The linux diff detected differences in gabls3_stats.nc<
>>No differences detected in the common fields in file gabls3_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case gabls3.<<<
**********************************************************************************************************
###DIFFING mpace_b netCDF (*.nc) files###
>The linux diff detected differences in mpace_b_stats.nc<
>>No differences detected in the common fields in file mpace_b_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case mpace_b.<<<
**********************************************************************************************************
###DIFFING rico_silhs netCDF (*.nc) files###
>The linux diff detected differences in rico_silhs_stats.nc<
>>No differences detected in the common fields in file rico_silhs_stats.nc<<
>>>Differences in linux diff but no differences in common variables detected for case rico_silhs.<<<
**********************************************************************************************************
SUMMARY:
Differences detected by linux diff but no differences in the common variables of the netCDF files compared.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 1d2996e43e6b32cb4cbc77931302a225c442888e

Checking Commit: 1d2996e43e6b32cb4cbc77931302a225c442888e
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 1d2996e43e6b32cb4cbc77931302a225c442888e
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Checking out 52de37f932acbfdda066610e31a8eacff0e4eb72
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Diffing: 'run_scripts/run_bindiff_all.py 1d2996e43e6b32cb4cbc77931302a225c442888e 52de37f932acbfdda066610e31a8eacff0e4eb72'

=============================== Test Results ===============================

Commit Range Checked = 52de37f932acbfdda066610e31a8eacff0e4eb72...1d2996e43e6b32cb4cbc77931302a225c442888e

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 1d2996e43e6b32cb4cbc77931302a225c442888e

=============================== Cleanup ===============================

Not removing any generated output.
	RENAMING 1d2996e43e6b32cb4cbc77931302a225c442888e to latest_revision_validated_1d2996e43e6b32cb4cbc77931302a225c442888e

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS