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</comment><date>2026-06-04 10:38:02 -0500</date><id>0d30e05f0411c43c5b0eecb8734433dd9a29deda</id><msg>Create README for python_sam_budgets_plotter folder</msg><path><editType>add</editType><file>postprocessing/python_sam_budgets_plotter/README</file></path></item><item 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plotgen (#1312)

* Removed entire plotgen directory 
</comment><date>2026-06-04 13:47:50 -0500</date><id>53893cabfda88eccc92204a3471b3855a4716aa6</id><msg>Removed plotgen 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/new_hybrid_pdf_main.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.py</affectedPath><affectedPath>src/CLUBB_core/advance_xp3_module.F90</affectedPath><affectedPath>clubb_jax/advance_clubb_core.py</affectedPath><affectedPath>clubb_python_api/clubb_python/clubb_api.py</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>clubb_jax/advance_clubb_to_end.py</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.py</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/Skx_module.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90</affectedPath><affectedPath>clubb_python_driver/advance_clubb_core.py</affectedPath><affectedPath>src/CLUBB_core/stats_clubb_utilities.F90</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/advance_helper.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.py</affectedPath><affectedPath>src/CLUBB_core/sigma_sqd_w_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.py</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xp3.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>clubb_python_api/tests/test_advance_core_subs.py</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/advance_xp3.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_stats_accumulate.py</affectedPath><affectedPath>clubb_python_api/clubb_f2py.pyf</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_meta.py</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py</affectedPath><commitId>0be32f96d2f5c4ce974c17fbc82912d516b68baf</commitId><timestamp>1780545147000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Clubb organization part3 (#1306)

* More BFB movements

* Reworking where sigma_sqd_w and gamma_Skw_fnc are computed - this should all be BFB. Also fixing the G_unit test that was failing due to sigma_sqd_w issues

* Correcting arg list

* Fixes after rebase

* Making sigma_sqd_w_zt BFB vs master when using iiPDF_type=7 (new hybrid)

* Fixing python API

* Changing name of compute_xp3 to diagnose_xp3 and moving a1_coef and a3_coef calculation back into advance routines

* Fixes for GPU code
</comment><date>2026-06-03 22:52:27 -0500</date><id>0be32f96d2f5c4ce974c17fbc82912d516b68baf</id><msg>Clubb organization part3 (#1306)</msg><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>clubb_jax/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/clubb_api.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/pdf_closure_module.F90</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>clubb_jax/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_helper.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_stats_accumulate.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp3_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sigma_sqd_w_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/new_hybrid_pdf_main.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_meta.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_advance_core_subs.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_f2py.pyf</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/Skx_module.F90</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_core.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/convert_to_async.py</affectedPath><affectedPath>jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile</affectedPath><commitId>8164a32e6256c0d21d4ecc9506117d79a7aaf047</commitId><timestamp>1780545161000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>GPU async script (#1307)

* Adding script that converts openacc directives to use async clauses and jenkins test to test that adding them does not change BFBness

* Small cleanup - fixing typo and adding comments.
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Clarified the role of clubb_python_api in the conversion process and improved the description of the test harness functionality.
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organization part2 (#1304)

A number of fields were being calculated in `advance_clubb_core` (`wp2_zt` `wp3_on_wp2` `wp3_on_wp2_zt` `Skw_zm` `Skw_zt) then passed into other routines, however, all these fields depend on `wp2` and were not being updated after `wp2` was being updated by `calc_sfc_varnce`. This commit fixes that by moving where these fields are calculated - instead of computing in `advance_clubb_core` with the incoming `wp2`, we now calculate them "on-demand" where they are needed using the most recent value of `wp2`. 

Using our default flag set, there are no numerical differences caused by this change set, only a few stats differences. There are real differences that occur when `l_upwind_xpyp_ta = .false.` (a clubb_config_flag value) or when `l_explicit_turbulent_adv_xpyp = .true.` (a parameter in model_flags.F90), but these are small differences and do not visually affect plots for our stable cases. Changing the order of the `advance_` routines would also cause this to be BIT_CHANGING, since that also affects the update path for `wp2` - now these values that got moved would be using the newest `wp2` instead of being "stale", also causing small (but real) differences.

* Calculating wp2_zt and wp3_on_wp2 where needed, rather than passing those values around through advance_clubb_core. This is BIT_CHANGING for a handful of stats only variables be default: wp3_on_wp2, wp3_on_wp2_zt, wp3_on_wp2_cfl_num, term_wprtp2_explicit, term_wprtpthlp_explicit, and term_wpthlp2_explicit. Some Skw_ variables when using lmm_stepping, and has actual differences (not just in stats output) when swapping the order of the advance routines

* Moving things around, this seems to all be BFB except for the Skw_ movements, which is BIT_CHANGING if the advance_ order changes

* Fixing python API

* Reverting some BFB changes
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* More organization. Also moving some stats calls inside of pdf_closure_driver, which is BIT_CHANGING, but only for stats output and only when ipdf_call_placement=ipdf_pre_post_advance_fields

* Adding new flag set for testing

* Fixing python API and updating prompt
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cleanup (#1301)

* BFB cleanup stuff

* Adding some helper routines

* More BFB changes

* More BFB changes

* More BFB changes

* More BFB changes

* Fixing python API and adding an agent file and a prompt to fix python API in the future.

* Updating scripts and improving formatting

* Updating some scripts and adding new jenkins test to compare the current branch vs master with flags

* Restoring BFBness when using l_lmm_stepping=.true. by reimplementing an existing bug...

* Making run_clubb_w_varying_flags.py not remove output, it's just unneccesary

* Simplifying script changes

* Jenkins script update

* Little consolidation of code in pdf_closure_driver

* Fixing python API

* Fixing parameterization_check formatting
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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Fixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b, and since this changes stats this is technically BIT_CHANGING"
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RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b, and since this changes stats this is technically BIT_CHANGING"</msg><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_driver_test/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_f2py.pyf</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.py</file></path><path><editType>edit</editType><file>clubb_jax/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_advance_core_subs.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/clip_explicit.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther 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* Initial clip covar changes

* Slightly nicer clipping count behavior
</comment><date>2026-05-04 14:38:14 -0500</date><id>643d128a5613019595aecd643f1028e937ad4b76</id><msg>Clip covar simplifications (#1297)</msg><path><editType>edit</editType><file>src/CLUBB_core/setup_clubb_pdf_params.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>edit</editType><file>src/Microphys/pdf_hydromet_microphys_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>README</affectedPath><affectedPath>cmake/deps/NetcdfFortranDependency.cmake</affectedPath><affectedPath>src/CMakeLists.txt</affectedPath><affectedPath>run_scripts/README</affectedPath><affectedPath>postprocessing/plotgen/cases/README</affectedPath><affectedPath>compile.py</affectedPath><affectedPath>run_scripts/run_scm.py</affectedPath><commitId>f146255f50732c445ccbd012ca45888a9ce44d0b</commitId><timestamp>1777938051000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Cmake netcdf fallback (#1294)

* WIP: Compile w/o NetCDF

- Currently failing from a 'version' error, but actually it's because the fortran cmake is testing a small c program to test functionality, but the C hasn't been built yet

* CMake configuration phase works for netcdf, but build fails

* Compiles almost all the way and has the executable clubb_standalone

* No errors to compile w/o netcdf

- CMake configure and build phase ran with no errors

- Clubb was functional after the build

* Fixed to work as a fresh user

- Worked with no netcdf and a clean clone of this branch

* Added blank line

* Got compile.py to run on gfortran, nvhpc, ifort, ifx

 - Needs testing for with/without netcdf pre-installed

* Fixed compiler logic

 - Basically, if not matching the default (gfortran) netcdf, and can't find a different one, then go from scratch.

* Small bug fixes

* Cleaned up code, all lines less than 100 characters

* Commented through code

* Removing redundancy

* Fixes to make -gptl flag work

* Improved comments, replaced .bash with .py in readme's
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* Possibly better string fix for python API

* Little test changes
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</comment><date>2026-04-08 16:06:21 -0500</date><id>0ab371ba28cf647f279567c04786ddc925aa5a87</id><msg>Remove line to test python scripts</msg><path><editType>edit</editType><file>src/CLUBB_core/CMakeLists.txt</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/CMakeLists.txt</affectedPath><commitId>2bac827cd3b91b3437ca62918583938237c9fd03</commitId><timestamp>1775696339000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line to test python scripts
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fix (#1288)

* Fixing code to comply with clubb standards and making standards check output a little nicer

* Fixing unused variable compiler errors

* Removing ifdef GFDL option

* A bit of cleanup

* Little GPU fix

* Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it

* Adding missed cmake files

* Improving various subroutine edits
</comment><date>2026-04-06 14:02:51 -0500</date><id>1e25b23661f4235b8a0484bf76bc542cc1ab5f6d</id><msg>Standards fix 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/tests/test_call_tree_new_tsdadg.py</affectedPath><affectedPath>clubb_python_api/f2py_fortran_wrappers/numerical_check_wrapper.F90</affectedPath><affectedPath>clubb_python_api/clubb_python/CLUBB_core/skx_module.py</affectedPath><affectedPath>clubb_python_api/clubb_python/derived_types/pdf_params.py</affectedPath><commitId>14926dd026f178cacec4336a6389e3c59c2eb4d4</commitId><timestamp>1775506956000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Clubb f2py (#1274)

* Initial python clubb driver. Currently BFB for bomex. This is using a hugely simplified clubb_driver currently.

* Fixes

* Making work with cmake, and generalizing for more cases to work (arm, bomex, wangara tested and correct)

* Lots of new interfaces, not all complete though.

* Bit better structure and read grid_class.py

* Improvements, mainly to pdf_closure stack

* Making UDTs handled more correctly - lots of python interfaces were missing them as aguements, which is needed for pushing/pulling

* Better pdf_params (implicit too) python type

* Various cleanup and simplifications

* Fixing up argument list orders

* Breakup up clubb driver and making real radiation call

* Improving run_bindiff script

* Small improvements

* Folder restructuring

* Fixing sclr/edsclr code

* Small fixes

* Better output directory config and python vs fortran driver test script

* Various small improvements to run scripts and dash app

* Improvements to sclr/edsclr/hydromet handling using a _transport variable. Most cases (3/8) in run_python_vs_fortran_cases.py matching now with multiple columns.

* Various cleanup

* Various improvements and cleanup

* Sync f2py branch with master radiation changes

* Fixing things after merge conflict

* Commenting run_bindiff_all better

* Small changes and rough draft of README

* Improvements to various things

* Various improvements and adding a python converted advance_clubb_core for fun

* Adding more apis for missed things and a nice script which checks for missed things

* Stuctural changes and better READMEs

* Little fixes

* Aligning inouts/outs

* Renaming jenkins test

* Adding script

* Little tweaks

* Small updates

* Better readme and api diagram

* Better readme and api diagram again

* Adding clubb_jax directory, just a copy of the python driver right now with some instructions/tips for the conversion process

* Final little changes to readme and renaming various things
</comment><date>2026-04-06 15:22:36 -0500</date><id>14926dd026f178cacec4336a6389e3c59c2eb4d4</id><msg>Clubb f2py 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</comment><date>2026-04-06 17:30:01 -0500</date><id>89a78e3c137f74f6b8ed0c02875651646e6b0fd8</id><msg>Added blank line to trigger git update scripts</msg><path><editType>edit</editType><file>src/Lapack/CMakeLists.txt</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>Changes_M2005</affectedPath><commitId>9d534983ad611d90632f67b0e85b7bf738786c58</commitId><timestamp>1775514643000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removed blank line to trigger git update scripts
</comment><date>2026-04-06 17:30:43 -0500</date><id>9d534983ad611d90632f67b0e85b7bf738786c58</id><msg>Removed blank line to trigger git update scripts</msg><path><editType>edit</editType><file>Changes_M2005</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/SILHS/CMakeLists.txt</affectedPath><commitId>ea158fd73790b07ad91600595adf0a10f0bccd04</commitId><timestamp>1775514734000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line to trigger git update scripts
</comment><date>2026-04-06 17:32:14 -0500</date><id>ea158fd73790b07ad91600595adf0a10f0bccd04</id><msg>Add blank line to trigger git update scripts</msg><path><editType>edit</editType><file>src/SILHS/CMakeLists.txt</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/stats/README</affectedPath><commitId>170ad3f0b10539e37efd2f19c76f51b6bec3a255</commitId><timestamp>1775514788000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line to trigger git update scripts
</comment><date>2026-04-06 17:33:08 -0500</date><id>170ad3f0b10539e37efd2f19c76f51b6bec3a255</id><msg>Add blank line to trigger git update scripts</msg><path><editType>edit</editType><file>input/stats/README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><commitId>8759dedaf6cd411a4d4943c3d8525b022ca00986</commitId><timestamp>1775514902000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line to trigger git update scripts
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</comment><date>2026-04-05 13:04:54 -0500</date><id>0c709755aa0cbd9a53923dc8ea2cd62f07913aa6</id><msg>Tiny fixes to scripts</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm.bash</file></path><path><editType>edit</editType><file>run_scripts/run_thread_test.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><affectedPath>src/CLUBB_core/stats_netcdf.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>run_scripts/run_bindiff_varying_flags_output.py</affectedPath><affectedPath>run_scripts/run_scm.py</affectedPath><commitId>b2e170923249df969fc5b3c0057edce4c1138e7d</commitId><timestamp>1775440060000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making run_bindiff_w_flags.py faster by calling run_scm.py directly and parallelizing over all cases/flag sets, rather than just calling run_scm_all.py and parallelizing over each flag batch. Also fixing a little stats bug that caused the time string to have weird trailing characters, and removing a little states print
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* Adding BFB test with varying flags

* Space diff

* Script fix

* Space diff

* Removing output .gitignore, we don't need it and it's annoying
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* Making matrix solve checks also trigger if l_implemented is true so that they always are done in CAM, regardless of debug level

* Reworking rcond flag in advance_windm

* Updating l_implemented flag comments

* Adding printouts to make clear where the NaN are (if any) in the soln vector.
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</comment><date>2026-03-22 00:56:32 -0500</date><id>9f2b1e6c9370a897e1da1320521fbc27baf6ff31</id><msg>GPUizing most of radiation code</msg><path><editType>edit</editType><file>src/Radiation/rad_lwsw_module.F90</file></path><path><editType>edit</editType><file>src/Radiation/simple_rad_module.F90</file></path><path><editType>edit</editType><file>src/Radiation/bugsrad_driver.F90</file></path><path><editType>edit</editType><file>src/Radiation/radiation_variables_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/interpolation.F90</file></path><path><editType>edit</editType><file>src/Radiation/radiation_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/Radiation/soil_vegetation.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/Radiation/radiation_module.F90</affectedPath><commitId>149e61f9bab26c5cb4518fd7bada9b1f4064482e</commitId><timestamp>1774236539000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Fixing multicol radiation stats bug.
</comment><date>2026-03-22 22:28:59 -0500</date><id>149e61f9bab26c5cb4518fd7bada9b1f4064482e</id><msg>Fixing multicol radiation stats bug.</msg><path><editType>edit</editType><file>src/Radiation/radiation_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>dash_app/run_tab/runtime.py</affectedPath><affectedPath>dash_app/run_tab/callbacks_runs.py</affectedPath><affectedPath>dash_app/run_tab/layout.py</affectedPath><commitId>0fc97f413d522aabb24db8c4a289aa5e5471256d</commitId><timestamp>1774237949000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding max tasks option to dash app
</comment><date>2026-03-22 22:52:29 -0500</date><id>0fc97f413d522aabb24db8c4a289aa5e5471256d</id><msg>Adding max tasks option to dash app</msg><path><editType>edit</editType><file>dash_app/run_tab/runtime.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/callbacks_runs.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/layout.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/generalized_grid_test.F90</affectedPath><commitId>d9d887857da333c2c683aad09311ffcdb2d54440</commitId><timestamp>1774239145000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Increasing tolerance for check_flipped_results - this is used in the generalized_grid_test when we allow the matrices to be solved in different vertical modes
</comment><date>2026-03-22 23:12:25 -0500</date><id>d9d887857da333c2c683aad09311ffcdb2d54440</id><msg>Increasing tolerance for check_flipped_results - this is used in the generalized_grid_test when we allow the matrices to be solved in different vertical modes</msg><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>598</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/598/</url></nextBuild><previousBuild><number>596</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/596/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.model.Cause$UserIdCause'><shortDescription>Started by user Gunther Huebler</shortDescription><userId>huebler</userId><userName>Gunther Huebler</userName></cause></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>596</buildNumber><marked><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><branch><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><branch><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><branch><SHA1>d20fd1daad5e5d921607794e258bfde151fd3c89</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#596</displayName><duration>704309</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #596</fullDisplayName><id>596</id><keepLog>false</keepLog><number>596</number><queueId>2286</queueId><result>SUCCESS</result><timestamp>1773884749417</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/596/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/Radiation/soil_vegetation.F90</affectedPath><affectedPath>src/Radiation/bugsrad_driver.F90</affectedPath><affectedPath>src/Radiation/simple_rad_module.F90</affectedPath><affectedPath>src/Radiation/BUGSrad/variables_radiation_module.F90</affectedPath><affectedPath>src/Radiation/radiation_variables_module.F90</affectedPath><affectedPath>src/Radiation/extended_atmosphere_module.F90</affectedPath><affectedPath>src/Radiation/BUGSrad/bugs_rad.F</affectedPath><affectedPath>src/soil_vegetation.F90</affectedPath><affectedPath>src/CLUBB_core/numerical_check.F90</affectedPath><affectedPath>compile/file_list/clubb_bugsrad_files</affectedPath><affectedPath>compile/file_list/clubb_model_files</affectedPath><affectedPath>src/Radiation/CMakeLists.txt</affectedPath><affectedPath>src/Radiation/BUGSrad/driver_read.F</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/Radiation/BUGSrad/CMakeLists.txt</affectedPath><affectedPath>src/CMakeLists.txt</affectedPath><affectedPath>src/Radiation/radiation_module.F90</affectedPath><commitId>cbaf3b7cad36f5843a53f7e5ce77943ca7cc64c9</commitId><timestamp>1773867770000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Clubb radiation update (#1283)

* Compartmentalizing radiation code a bit

* More compartmentalizing

* Pushing loop into bugsrad because it makes things cleaner

* Small loop pushes

* Little cleanup

* Moving soil_veg code

* GPU fix and a little cleanup

* Missed a file to commit

* Making work with old build system

* Need zeroing routines for set_case_initial_conditions

* Adding comment explaining why advance_soil_veg is being packaged with Radiation code now
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* Mainly dash app improvements, but also removing unused args from stats and improving run scripts

* Small update to ui in run tab

* Improvements to make plotting faster, fixing various bugs, making things more robust, and adding more run modification fields (out_dir/dt_main/etc)

* Adding les plotting capabilities, lots of tiny improvements

* Reverting run_bindiff_all.py

* Tiny quality of life improvements - fixing port conflict, opening in browser automatically, and defaulting to the run_tab instead of requiring a first click
</comment><date>2026-03-18 17:15:29 -0500</date><id>49bd72c6b6ee57f27c7694b25facd1b0eb91bd09</id><msg>Dash app improvements (#1280)</msg><path><editType>add</editType><file>dash_app/plot_tab/benchmark_overlay.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/subcolumn_plot.py</file></path><path><editType>add</editType><file>dash_app/assets/35_plots_keyboard.js</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/shared.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/callbacks_params.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/registry.py</file></path><path><editType>add</editType><file>dash_app/run_tab/callbacks_runs.py</file></path><path><editType>edit</editType><file>dash_app/app.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/budget_plot.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm.py</file></path><path><editType>delete</editType><file>dash_app/case_definitions.py</file></path><path><editType>add</editType><file>dash_app/run_tab/callbacks_selection.py</file></path><path><editType>add</editType><file>dash_app/run_tab/discovery.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/specs.py</file></path><path><editType>add</editType><file>dash_app/run_tab/runtime.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_netcdf.F90</file></path><path><editType>edit</editType><file>dash_app/assets/11_tab_run_theme.css</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/timeseries_plot.py</file></path><path><editType>add</editType><file>dash_app/assets/12_tab_plots_theme.css</file></path><path><editType>add</editType><file>dash_app/assets/33_run_param_rows.js</file></path><path><editType>add</editType><file>dash_app/plot_tab/case_definitions.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/state.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/callbacks_case.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/tab.py</file></path><path><editType>add</editType><file>dash_app/run_tab/namelist.py</file></path><path><editType>delete</editType><file>dash_app/tab_run.py</file></path><path><editType>delete</editType><file>dash_app/tab_compare.py</file></path><path><editType>delete</editType><file>dash_app/tab_multicol.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/base_plot.py</file></path><path><editType>edit</editType><file>run_scripts/create_multi_col_params.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/__init__.py</file></path><path><editType>edit</editType><file>dash_app/assets/10_theme.css</file></path><path><editType>add</editType><file>dash_app/run_tab/callbacks_console.py</file></path><path><editType>add</editType><file>dash_app/run_tab/callbacks_settings.py</file></path><path><editType>add</editType><file>dash_app/run_tab/__init__.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/callbacks_grid.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/callbacks_controls.py</file></path><path><editType>add</editType><file>dash_app/run_tab/state.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/profile_plot.py</file></path><path><editType>add</editType><file>dash_app/assets/34_run_param_clientside.js</file></path><path><editType>add</editType><file>dash_app/plot_tab/layout.py</file></path><path><editType>add</editType><file>dash_app/assets/31_plots_ui_resize.js</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/timeheight_plot.py</file></path><path><editType>add</editType><file>dash_app/run_tab/tab.py</file></path><path><editType>add</editType><file>dash_app/assets/32_plots_constant_param_rows.js</file></path><path><editType>add</editType><file>dash_app/run_tab/layout.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/__init__.py</file></path><path><editType>add</editType><file>dash_app/plot_tab/plot_types/budget_groups.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><commitId>d3c5a22e8d71e7224d34ffe7c7d2276679df7492</commitId><timestamp>1773882901000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Now that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test too
</comment><date>2026-03-18 20:15:01 -0500</date><id>d3c5a22e8d71e7224d34ffe7c7d2276679df7492</id><msg>Now that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test too</msg><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><commitId>d20fd1daad5e5d921607794e258bfde151fd3c89</commitId><timestamp>1773884674000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables.
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</comment><date>2026-03-17 13:14:11 -0500</date><id>02123793194ca95295bbd90c35129faf395b9525</id><msg>Toolchain names were changed, so the references to them should've changed in the jenkins tests.</msg><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/test_monoflux_limiter_GPU.py</affectedPath><commitId>36ca61e3203b201832c5ca74ce764fc7e97786a8</commitId><timestamp>1773771352000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Toolchain names were changed, so the references to them should've changed in this test too.
</comment><date>2026-03-17 13:15:52 -0500</date><id>36ca61e3203b201832c5ca74ce764fc7e97786a8</id><msg>Toolchain names were changed, so the references to them should've changed in this test too.</msg><path><editType>edit</editType><file>run_scripts/test_monoflux_limiter_GPU.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>src/G_unit_tests.F90</affectedPath><affectedPath>src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><commitId>c15b1d3c005fdffa76902e976acdb5db5dbde012</commitId><timestamp>1773804486000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>ADG1_w_closure consistency fix (#1282)

* G_unit_test / ADG1_w_closure fix. A recent commit (bff619bdb2836f83ac658be8b8c258d41aaa6e14) introduced a change to ADG1_ADG2_responder_params that caused an inconsistency in the pdf calculations that the G_unit tests picked up on. This corrects it, but is also BIT_CHANGING, since it changes the calculation slightly when wp2 is exactly tolerance.

* Adding test to ensure err_info is correctly set by adg1 routines when calling with bad inputs - also moving wp2 check to ADG1_w_closure because it makes more sense there
</comment><date>2026-03-17 22:28:06 -0500</date><id>c15b1d3c005fdffa76902e976acdb5db5dbde012</id><msg>ADG1_w_closure consistency fix (#1282)</msg><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>src/G_unit_tests.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/matrix_solver_wrapper.F90</affectedPath><affectedPath>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</affectedPath><affectedPath>run_scripts/test_fatal_error_handling.py</affectedPath><affectedPath>src/CLUBB_core/lapack_wrap.F90</affectedPath><commitId>bdee6e6dbac76a996cdf73a88522c47affdd4d90</commitId><timestamp>1773805495000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixing clubb_error_handling_gfortran_test (#1281)

* Fixing error test by making the code check for NaNs in all solver cases - before it was only checking in Lapack. Also making a python version of the test and updating jenkins script to use it.

* A little cleanup

* Adding more comments and making a little data structure for the tests
</comment><date>2026-03-17 22:44:55 -0500</date><id>bdee6e6dbac76a996cdf73a88522c47affdd4d90</id><msg>Fixing clubb_error_handling_gfortran_test (#1281)</msg><path><editType>edit</editType><file>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>src/CLUBB_core/lapack_wrap.F90</file></path><path><editType>add</editType><file>run_scripts/test_fatal_error_handling.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/matrix_solver_wrapper.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>596</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/596/</url></nextBuild><previousBuild><number>594</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/594/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>594</buildNumber><marked><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><branch><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><branch><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><branch><SHA1>3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#594</displayName><duration>853596</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #594</fullDisplayName><id>594</id><keepLog>false</keepLog><number>594</number><queueId>2126</queueId><result>SUCCESS</result><timestamp>1773736149070</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/594/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_scm.py</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><commitId>2108b26241ca7695b3358c5f905385e79189cdc2</commitId><timestamp>1773679567000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Forgot to add the changes to make concurrency safe - which caused random failures when using the new parallel run_scm_all.py with options like -out_dir or -ngrdcol
</comment><date>2026-03-16 11:46:07 -0500</date><id>2108b26241ca7695b3358c5f905385e79189cdc2</id><msg>Forgot to add the changes to make concurrency safe - which caused random failures when using the new parallel run_scm_all.py with options like -out_dir or -ngrdcol</msg><path><editType>edit</editType><file>run_scripts/run_scm.py</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>cmake/toolchains/linux_x86_64_gfortran.cmake</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_nvfortran.cmake</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_gcc.cmake</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_ifx.cmake</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_nvhpc.cmake</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_intel.cmake</affectedPath><affectedPath>compile.py</affectedPath><affectedPath>cmake/toolchains/linux_x86_64_cce.cmake</affectedPath><commitId>6b49cb739e4c6970da64b808e791b85a227b44b3</commitId><timestamp>1773718458000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Slightly more general compile setup (#1277)

* Making compiler lookup a little more general, this allows us to compile on Derecho too. Now it uses LMOD_FAMILY_COMPILER by default, then tries FC as a backup, and has a map of names so that things like intel/intel-oneapi map to the same things. Also adding a toolchain for the cray compiler (cce).

* Removing old toolchains
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* Making compiling with gptl more robust. Before it could only compile when we used openmp too, but that's been worked around, and now it can compile on nvhpc too thanks to the static and disabled-shared flags that were added. Also works with gcc now.

* Adding comment

* Small cleanup and a better comment
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* Adding multiprocesses to run_scm_all.py, making the GPU jenkins tests only use 1 thread though, otherwise the different processes will fight for GPU usage

* Making the if statement in ADG1_ADG2_responder_params use a strict inequality - this was causing numerical issues when fields were close to tolerance. This will be slightly BIT_CHANGING for most cases.

* Adding comments to run_scm_all.py and removing the if-case in ADG1_ADG2_responder_params in favor of an explicit error check

* Changing nprocs to nproc and updating jenkins tests
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</comment><date>2026-03-13 18:47:34 -0500</date><id>e589c52f0d3f735c8a1f4206fce09e7e4b0f7578</id><msg>Added blank line</msg><path><editType>edit</editType><file>src/CLUBB_core/calendar.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/LY93_pdf.F90</affectedPath><commitId>a1dd370ac9a7d03023289b7025c7e30eca0184d1</commitId><timestamp>1773453517000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Remove Id tag from LY93_pdf.F90 in order to trigger git update scripts

larson-group/sys_admin#848
</comment><date>2026-03-13 20:58:37 -0500</date><id>a1dd370ac9a7d03023289b7025c7e30eca0184d1</id><msg>Remove Id tag from LY93_pdf.F90 in order to trigger git update scripts</msg><path><editType>edit</editType><file>src/CLUBB_core/LY93_pdf.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/SILHS/est_kessler_microphys_module.F90</affectedPath><commitId>02e8b46e176338e0beae7ab6fe3bb4ab2c11a7f2</commitId><timestamp>1773453655000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Remove unnecessary comments from est_kessler_microphys_module

in order to trigger git update scripts.  larson-group/sys_admin#848
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* Setting our solvers to use the new LU solvers by default instead of Lapack. This is BIT_CHANGING, but not answer changing.

* Also changing default in code
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</comment><date>2026-03-02 14:38:56 -0600</date><id>967e4c00c3609874bf0c9eecbd93781724252ce9</id><msg>Force-sync README to match SAM</msg><path><editType>edit</editType><file>src/Microphys/Morrison_microphys/README.MICRO_M2005</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/CMakeLists.txt</affectedPath><commitId>6340e0a542105e3612b9709f3192cdf3b88a55ec</commitId><timestamp>1772502018000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add blank line to test python scripts

Testing python scripts from crontab
</comment><date>2026-03-02 19:40:18 -0600</date><id>6340e0a542105e3612b9709f3192cdf3b88a55ec</id><msg>Add blank line to test python scripts</msg><path><editType>edit</editType><file>src/CLUBB_core/CMakeLists.txt</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>Changes_M2005</affectedPath><commitId>8cb40c6a054a81383415a640c91d5effcc187d28</commitId><timestamp>1772502096000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Added blank line to test python update scripts

Testing python update scripts from crontab
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* First commit in removing legacy stats

* Removing accidentally added plots

* Updates to fix and improve various things. Removing grads handling from lots of test scripts

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* More reversions

* More reversions

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* Simplifications

* Simplifications

* Simplification

* Simplification

* Simplification

* Simplification

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* Reverting case defs to use old scripts, removing need to unify old ones
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ectedPath><affectedPath>src/input_interpret.F90</affectedPath><affectedPath>src/Input_fields/input_fields.F90</affectedPath><affectedPath>src/clubb_thread_test.F90</affectedPath><affectedPath>src/soil_vegetation.F90</affectedPath><affectedPath>run_scripts/run_restart_test.py</affectedPath><affectedPath>run_scripts/run_scm.py</affectedPath><affectedPath>src/CLUBB_core/stats_sfc_module.F90</affectedPath><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><affectedPath>run_scripts/run_thread_test.py</affectedPath><affectedPath>src/sounding.F90</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfile</affectedPath><affectedPath>src/Microphys/silhs_category_variance_module.F90</affectedPath><affectedPath>run_scripts/test_monoflux_limiter_GPU.py</affectedPath><affectedPath>src/CMakeLists.txt</affectedPath><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><affectedPath>src/error.F90</affectedPath><commitId>3d4d74a0d0295936253484c54693f9eac230f604</commitId><timestamp>1771386880000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>New stats system  (#1270)

* Initial commit for the new stats system

* Adding helper scripts

* Fixes and another script

* Updates

* Improvements

* Fixed bug in all_stats.in

* Updates

* Adding dash app

* Updates, also including new dash app since I'm finding it quite useful

* Improvements/fixes and adding missing variable to all_stats.in

* Updates

* Moving wp2sclrp, wpsclrp2, wpsclrprtp, and wpsclrpthlp to the zt netcdf output file, since those are zt variables. Also adding a missing variable, rcm_in_cloud, to all_stats.in and correcting a missing comma bug. This is technically BIT_CHANGING because the variables are moving files, but the stored data is identical from 1:nzt - the nzm level just had garbage for those variables and is now gone.

* Updates

* Updates

* The big stats pull, only new stats remains now

* Some cleanup

* Lot's of core rework, new index caching system speeds things up

* Missed files

* Small improvements a bug fix to the grid remapped output

* Fixing up logic and ordering things a bit better

* Little improvements

* Cleanup and simplications to new stats core

* Little improvements, mostly to dash app

* Mostly cleanup

* Making GPU code work

* Making more scripts work

* Fixing line lengths

* Bug fixes

* Bug fixes

* Bug fixes

* Bug fixes

* Bug fixes and script updates

* Jenkins script update

* Jenkins script update

* Jenkins script update

* Jenkins script update

* Jenkins script update

* Jenkins script update

* Script update

* Script update

* Script update

* Script update

* Script update

* Script update

* Script update

* Test update

* Jenkins script update

* Test update

* Fixing bug

* Fixing bug

* Fixing up comments

* Small fixes

* Jenkins script update

* CMake update

* Little fix for cmake

* Jenkins script update

* Jenkins script updateS

* Cmake update

* Jenkins script update

* Jenkins script update

* Jenkins script updates

* Adding new stats input

* Small fixes

* Fixing old compile scripts

* Jenkins script updates

* Jenkins script updates

* Jenkins script updates

* Little fixes

* Little cmake fix

* Little jenkins fix

* Mono flux test update and _api renamings

* Small Jenkins fix

* Adding missing comments back

* Even more comments

* stats updates

* Even more comments

* Various small improvements

* Removing test statsd

* Adding some things back to _api and adding structure explaining comment in stats files.

* Many more comments

* Removing plan file

* Spelling fix
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trad coriolis (#1267)

* Updating the clubb core and silhs version files

* Fixing bug. qclvar copying is handled by the api, but we were deleting it with an unstructured data statement. I added this due as a fix before thinking qclvar was a local variable, which happened because I mixed up the CLUBB_CAM and CLUBBND_CAM flags. https://github.com/larson-group/cam/issues/175

* Fixing GPU bug. There is a vertical dependency with wpxp. This is what was breaking the ECT test, see larson-group/cam#175

* Moving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test.

* Moving PosInf to clubb_model_settings.F90

* Updating the clubb core and silhs version files

* Add flags for the Coriolis terms.

* Pass fcory from api module into advance module

* Implement the traditional Coriolis terms

* Implement the nontraditional Coriolis terms

* Add stats variables for the Coriolis terms

* Compute Coriolis parameters from namelist latitude

* Create the coriolis_test case

* Tune the coriolis_test case. However, oscillation frequency is too slow

* Correct a coefficient in Coriolis. "coriolis_test" matches analytical

* Update advance_clubb_core_module.F90

Rename fcory as fcor_y and add description

* Update advance_wp2_wp3_module.F90

Rename fcory as fcor_y and add description

* Update advance_xm_wpxp_module.F90

Rename fcory as fcor_y and add description

* Update advance_xp2_xpyp_module.F90

Rename fcory as fcor_y and add description

* Update clubb_api_module.F90

Rename fcory as fcor_y and add description

* Update spurious_source_test.F90

Rename fcory as fcor_y and add description

* Update clubb_driver.F90

Rename fcor as fcor_y and add description.
Also, add description for the coriolis_test

* Update generalized_grid_test.F90

Rename fcory as fcor_y and add description.

* Update coriolis_test_model.in

Add description for the Coriolis test case

* Stablize the cgils_s6 case with smaller time step

* Create the ekman case

* Tune the ekman case to match LES

* Compute wp2up with PDF and pass along with wp2thvp

* Implement the nontraditional Coriolis term for wp3

* Fine-tune parameters for the ekman case

* Create the atex_long case

* Retune ekman case with l_vary_convect_depth = .true.

* Fine-tune the atex_long case

* Add atex_long case to pyplotgen

* Fine-tune atex_long case with less radical changes

* Updating the clubb core and silhs version files

* Small bug fix in the wp2up flip and adding new files to the cmakelist

* Renmaing, moving some files, and reverting change to cgils_s6 timestep

* Adding new flags to flag test file

* Updating comment for fcor_y calculation explanation

* Removing accidentally added file

---------

Co-authored-by: pickett &lt;larsongroupgithub@gmail.com&gt;
Co-authored-by: Hing Ong &lt;hing.ong@anl.gov&gt;
Co-authored-by: Hing Ong &lt;36782452+HingOng@users.noreply.github.com&gt;
</comment><date>2026-01-08 14:23:44 -0600</date><id>4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2</id><msg>Non trad coriolis (#1267)</msg><path><editType>add</editType><file>input/case_setups/ekman_model.in</file></path><path><editType>edit</editType><file>input/stats/host_budgets_stats.in</file></path><path><editType>edit</editType><file>input/case_setups/cgils_s6_model.in</file></path><path><editType>add</editType><file>input/case_setups/atex_long_edsclr_sounding.in</file></path><path><editType>edit</editType><file>input/stats/nobudgets_nomicro_stats.in</file></path><path><editType>edit</editType><file>src/Benchmark_cases/CMakeLists.txt</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>add</editType><file>input/case_setups/coriolis_test_sclr_sounding.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/output_netcdf.F90</file></path><path><editType>edit</editType><file>compile/file_list/clubb_model_files</file></path><path><editType>add</editType><file>input/tunable_parameters_coriolis_cases/ekman_parameters.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>add</editType><file>input/case_setups/atex_long_sclr_sounding.in</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_adaptation_module.F90</file></path><path><editType>edit</editType><file>src/input_fields.F90</file></path><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/pdf_closure_module.F90</file></path><path><editType>add</editType><file>input/case_setups/ekman_edsclr_sounding.in</file></path><path><editType>add</editType><file>input/case_setups/ekman_sclr_sounding.in</file></path><path><editType>add</editType><file>input/case_setups/atex_long_model.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zt_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_core_flags.json</file></path><path><editType>add</editType><file>input/tunable_parameters_coriolis_cases/coriolis_test_parameters.in</file></path><path><editType>add</editType><file>input/case_setups/coriolis_test_model.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>input/stats/nightly_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>add</editType><file>input/tunable_parameters_coriolis_cases/atex_long_parameters.in</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/Case_definitions.py</file></path><path><editType>add</editType><file>input/case_setups/atex_long_sounding.in</file></path><path><editType>add</editType><file>src/Benchmark_cases/ekman.F90</file></path><path><editType>edit</editType><file>input/stats/scalars_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/numerical_check.F90</file></path><path><editType>add</editType><file>src/Benchmark_cases/atex_long.F90</file></path><path><editType>add</editType><file>input/case_setups/ekman_sfc.in</file></path><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/constants_clubb.F90</file></path><path><editType>add</editType><file>input/case_setups/coriolis_test_sfc.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_clubb_utilities.F90</file></path><path><editType>add</editType><file>input/case_setups/coriolis_test_sounding.in</file></path><path><editType>edit</editType><file>src/Benchmark_cases/prescribe_forcings.F90</file></path><path><editType>add</editType><file>input/case_setups/atex_long_sfc.in</file></path><path><editType>add</editType><file>input/case_setups/ekman_sounding.in</file></path><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zm_module.F90</file></path><path><editType>add</editType><file>input/case_setups/coriolis_test_edsclr_sounding.in</file></path><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>input/stats/nobudgets_stats.in</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</abs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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>run_scripts/run_bindiff_w_flags_config_core_flags.json</affectedPath><affectedPath>input/case_setups/arm_97_model.in</affectedPath><affectedPath>input/case_setups/arm_97_edsclr_sounding.in</affectedPath><commitId>418c202a9b0512fc8c4f421918cc978164db852d</commitId><timestamp>1766005108000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixes for fill_holes and edsclr code (#1266)

* Fixing bugs in new hole fillers that caused error when ran in descending mode, the issue was that dz is negative in descending mode, so we need abs() around it when calculating the normalized mass. Also fixing a related bug in the way edsclr code calls the hole filler - it was not using the generalized bounds. Also removing the ifdef in favor of normal ifs

* Copying the rtm and thm values from arm_97_sounding.in to the edsclr_sounding file. This still allows arm_97 to catch the bugs we want it to.
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* Making new flag l_force_descending_solves that forces us to use descending solves. Having it true keeps results BFB between ascending and descending when using -O0.

* renaming test

* Moving flag

* test fix

* test fix

* test fix

* Removing iteration limit on script and adding test error

* Removing test error, it was correctly caught

* Adding max statement to aid in single precision runs and removing accidentally commited file.
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</comment><date>2025-12-01 19:31:28 -0600</date><id>a5597665ed8bdd21902000712f8ad2685276eec0</id><msg>Add blank line to README.</msg><path><editType>edit</editType><file>README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/penta_lu_solver.F90</affectedPath><commitId>bba14c86a748da7993af72c056a9f6505cf43f1b</commitId><timestamp>1764747200000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING bug fix for the penta_lu solver, only BC when using penta_solve_method=2 (#1264)

</comment><date>2025-12-03 01:33:20 -0600</date><id>bba14c86a748da7993af72c056a9f6505cf43f1b</id><msg>BIT_CHANGING bug fix for the penta_lu solver, only BC when using penta_solve_method=2 (#1264)</msg><path><editType>edit</editType><file>src/CLUBB_core/penta_lu_solver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_plot_solver_compare/Jenkinsfile</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/matrix_solver_wrapper.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/penta_bicgstab_solver.F90</affectedPath><affectedPath>src/CLUBB_core/CMakeLists.txt</affectedPath><commitId>14f5e6e323b11dc9e5fff8ca5982c6ab7f92f8c1</commitId><timestamp>1764884961000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Bicgstab addition (#1261)

* Adding 'initial' bicgstab solver

* Currently working, lots of diagnostic code still present

* Pruning everything unneccesary, adding lots of comments, making names good.

* Adding jenkins test to plot results with different solvers

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script update

* Removing print statement

* Improved naming and comments

* Removing print statement

* A couple more comments.
</comment><date>2025-12-04 15:49:21 -0600</date><id>14f5e6e323b11dc9e5fff8ca5982c6ab7f92f8c1</id><msg>Bicgstab addition (#1261)</msg><path><editType>add</editType><file>src/CLUBB_core/penta_bicgstab_solver.F90</file></path><path><editType>add</editType><file>jenkins_tests/clubb_plot_solver_compare/Jenkinsfile</file></path><path><editType>edit</editType><file>src/CLUBB_core/CMakeLists.txt</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/matrix_solver_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/penta_bicgstab_solver.F90</affectedPath><commitId>988ea0f2cc24e424e0a204b65bfd59bd4e9eee5b</commitId><timestamp>1764902874000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small bug fix to make gfortran+debug happy, without the _core_rknd this could be a potential type error
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</comment><date>2025-11-23 13:06:28 -0600</date><id>d5703f0d199f44b4fb66df14b4ebfcdb14b57c19</id><msg>Making update_xp2_mc work with either grid mode (#1263)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><commitId>0da744a4b04f078044dcee08c614ad2a47916751</commitId><timestamp>1763952429000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Improving variable name
</comment><date>2025-11-23 20:47:09 -0600</date><id>0da744a4b04f078044dcee08c614ad2a47916751</id><msg>Improving variable name</msg><path><editType>edit</editType><file>src/CLUBB_core/fill_holes.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_clubb_utilities.F90</affectedPath><commitId>040e9961b5b422803a0aa816c5921be9576aa4a8</commitId><timestamp>1763952752000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small bug fix, but this is BIT_CHANGING because it affects stats output. Some zm fields (w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm) were all nan in the netcdf output when l_call_pdf_closure_twice=.false., because those come from pdf_params_zm.
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Also making the compile script a little more robust.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>add</editType><file>src/CLUBB_core/error_code.mod</file></path><path><editType>edit</editType><file>src/CLUBB_core/error_code.F90</file></path><path><editType>edit</editType><file>compile.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/fill_holes.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>575</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/575/</url></nextBuild><previousBuild><number>573</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/573/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster 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fill_holes methods (#1262)

* Adding little code bits to help explore fill_holes. This is just a diagnostic playground

* Improvements

* Maybe better algorithm?

* Improvements to the new fill holes

* Nice progress

* Small tweaks

* Mainly adding gptl option for cmake and new run_timestep_tests.py

* Making namelist input for fill type, and adding ANOTHER new filler that should be completely parallelizable, but right now large hole groups steal too much from nearby points and it looks kinda bad.

* Big improvements, new algorithm is good now

* Small updates

* Making new fill_holes_type flag for clubb_config_flags

* New hybrid filler

* Small fixes

* Changes, mainly for performance, also adding -gptl option to compile.py to make it use the gptl library

* Bunch of things

* Updates

* small fix

* Various cleanup and comments

* Small improvement to p_atomic

* Updates for speed mainly

* Small improvement to p_atomic

* Potential improvement to p_atomic

* Updates for speed mainly

* Updates to make G_unit fill holes test

* Improving new tests and making widening_windows and smart_window work in flipped grid mode

* All methods passing G_unit test, still need a little cleanup

* Slight comments update

* Cleanup

* Adding named constants for fill type

* Uncommentting source checks after compile

* Adding new file to old compile method

* Small fixes

* Small fixes

* Mainly comments

* Making G_unit test use the new python script and compiler method. Small bug fix too

* Little fixes
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</comment><date>2025-11-13 19:02:28 -0600</date><id>9745207a28bd22786d72673afd580fbc5f17938b</id><msg>Making compatible with new version of clubb (#167)</msg><path><editType>edit</editType><file>microphysics.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><commitId>50a5528a55591d69e8b704dccebe1e7d6baa2669</commitId><timestamp>1763105789000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small bug fix in fill_holes_parallel on GPU
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driver upgrades part2 (#1257)

* Initial commit. Breaking up clubb driver into sections. This should be bfb on everything, but this hasn't been checked well yet.

* Combining namelist read into case init, same stuff really

* Reorganizing many things, mainly in the pursuit of sectioning off code into groups like Microphys or Radiation

* Organizing clubb_driver. All cases still BFB.

* Mostly cosmetic improvements

* Small improvements, comments, making clubb_driver_test to ensure consistency functionality of new compartmentalized model run components

* Removing accidentally added files.

* Mostly breaking up structure initialization behavior, split into init_ and zero_ so that we don't have to allocate to reset.

* Doing away with clubb_model_settings and parameters_module in the spirit of consolidating functionality and spiting module variables.

* Missed some changes to commit, should've been included in previous commit

* Splitting up funcionality of setup_parameters. Now theres one part that calculates and another checks flag values.

* GPU code working, but not BFB yet

* GPU all BFB with mutliple columns, except gabls3, and driver test doesnt work (pass reinitialize, fails double timestep test)

* Turning off multi_column output for the new driver test

* Changes needed after rebase

* Name changes, comments, and threadprivate additions for parallel runs

* Adding variables to openacc data statements. Without this, the code crashes when using the GPU with l_godunov_upwind_xpyp_ta=.true.

* Modifying compiler configurations (mainly optimization level) in order to prepare for switching scipts and tests to cmake, specifically separating out this BIT_CHANGING commit from the rest

* thlm_ed and rtm_ed caused GPU errors since those variables were added to a acc loop, but never added to the acc data statement. This change makes it so they're only calculated on the CPU, since they are only used for stats, fixing the issue without adding the GPU memory footprint.

* Adding -Mstack_arrays to the nvfortran flags causes us to use more stack space, which means we need to allow processes to use more stack space (when using lots of columns, since that increases memory footprint). We do by using using 'ulimit BIGNUMBER'.

* Making old compiler script work with new file structure, also making Input_fields directory and library.

* Missed text_writer_lib

* Undoing Input_fields directory, it has too many depencencies currently, certainly can be simplified with argument lists.

* Adding library dependency

* Small changes to cmake list

* Adding openmp flag back to gfortran script, needed for jenkins test

* Making the init_inputfields get called for restarts too, because restart code call input_field code.

* Making pdf_implicit_coefs_terms conditional in generalized grid test

* Adding microphys directory to acc_to_omp script

* Renaming -iters option in run_scm.py to -max_iters

* Making run_scm_all.py and new driver test

* Test and script improvements

* Limiting iterations in jenkins test

* Name change

* adding ulimit

* name update

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script update

* jenkins script and run_scm_all.py update

* jenkins script update

* Turning calc_lmin_nu into calc_derrived_params, which is more general, and now calculates mixt_frac_max_mag

* Small improvement for GPU

* Small updates needed for host model integration

* Removing accidentally added file

* Small cleanup
</comment><date>2025-10-05 20:45:58 -0500</date><id>1f751ddf9c56cfa707bc5b302f0bc3b40c708a8d</id><msg>Clubb driver upgrades part2 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d_correlate.F90</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/eqa19g.F</file></path><path><editType>add</editType><file>src/Microphys/Microphys_utils/microphys_stats_vars_module.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa19.F</file></path><path><editType>delete</editType><file>src/BUGSrad/bugs_rad.F</file></path><path><editType>add</editType><file>src/clubb_driver_test.F90</file></path><path><editType>edit</editType><file>src/error.F90</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/eqa19.F</file></path><path><editType>delete</editType><file>src/Morrison_microphys/README.MICRO_M2005</file></path><path><editType>edit</editType><file>src/clubb_standalone.F90</file></path><path><editType>add</editType><file>src/Radiation/BUGSrad/bugsrad_planck.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/conice.F</file></path><path><editType>edit</editType><file>src/SILHS/silhs_api_module.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa22g.F</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/nrmtqi.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/slope.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/eqa6.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/adjmlt.F</file></path><path><editType>add</editType><file>src/Microphys/parameters_microphys.F90</file></path><path><editType>delete</editType><file>src/enhanced_simann_fobj.inc</file></path><path><editType>edit</editType><file>src/clubb_thread_test.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa27r.F</file></path><path><editType>edit</editType><file>src/CLUBB_core/CMakeLists.txt</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/esat_new.F</file></path><path><editType>add</editType><file>src/Microphys/module_mp_graupel.F90</file></path><path><editType>add</editType><file>src/Radiation/BUGSrad/cloudg.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/eqa22.F</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/esatvm.prol</file></path><path><editType>add</editType><file>src/Microphys/KK_microphys/KK_Nrm_tendencies.F90</file></path><path><editType>delete</editType><file>src/parameters_radiation.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/gamma.F</file></path><path><editType>add</editType><file>src/Microphys/SCM_Activation/CVS/Repository</file></path><path><editType>delete</editType><file>src/BUGSrad/cloud_correlate.F90</file></path><path><editType>delete</editType><file>src/BUGSrad/comscp2.F</file></path><path><editType>edit</editType><file>CMakeLists.txt</file></path><path><editType>delete</editType><file>src/Morrison_microphys/CMakeLists.txt</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/CMakeLists.txt</file></path><path><editType>delete</editType><file>src/KK_microphys/KK_upscaled_covariances.F90</file></path><path><editType>add</editType><file>src/Microphys/silhs_category_variance_module.F90</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/nrmtqw.F</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa7.prol</file></path><path><editType>add</editType><file>src/Radiation/parameters_radiation.F90</file></path><path><editType>delete</editType><file>src/CLUBB_core/mt95.F90</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/eqa15.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/esat_new.F</file></path><path><editType>delete</editType><file>src/COAMPS_microphys/esati.F</file></path><path><editType>delete</editType><file>src/SCM_Activation/aer_ccn_act_k.F90</file></path><path><editType>add</editType><file>src/Radiation/BUGSrad/variables_radiation_module.F90</file></path><path><editType>add</editType><file>src/Benchmark_cases/prescribe_forcings.F90</file></path><path><editType>add</editType><file>src/Radiation/BUGSrad/two_rt_sw.F</file></path><path><editType>add</editType><file>src/Microphys/KK_microphys/AiryFunction.f90</file></path><path><editType>add</editType><file>src/Microphys/KK_microphys/parameters_KK.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa25.F</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa9.prol</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/eqa18.prol</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/adjtq.prol</file></path><path><editType>add</editType><file>src/Microphys/KK_microphys/KK_upscaled_covariances.F90</file></path><path><editType>add</editType><file>src/Microphys/COAMPS_microphys/esat1.prol</file></path><path><editType>add</editType><file>src/Microphys/COAMPS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_class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#570</displayName><duration>686424</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #570</fullDisplayName><id>570</id><keepLog>false</keepLog><number>570</number><queueId>11587</queueId><result>SUCCESS</result><timestamp>1759523011510</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/570/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_gfortran.bash</affectedPath><commitId>df9e2152bc4889d33e801021a44c11fd6b685d1f</commitId><timestamp>1759522935000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Must add -fopenmp back for now, since this is used for the openmp test and it also broke the BFB tests for an obnoxious reason - that test compiles each commit without cleaning the build, so the baseline commit had -fopenmp and compiled with openmp stuff enabled, but then the subsequent commits had it turned off, but no changes in the files, so it didn't recompile with it off, and only turned it off in the linking stage, causing a build error. RESOLVED:320551df13ee84bdb9280db0be788a36e1f03494 RESOLVED:6c0201d44694fadf7f4bb0d4d58c3a9871096a22 RESOLVED:26644de2ea83ee6335b273f54dd57afc8f6f4b0c
</comment><date>2025-10-03 15:22:15 -0500</date><id>df9e2152bc4889d33e801021a44c11fd6b685d1f</id><msg>Must add -fopenmp back for now, since this is used for the openmp test and it also broke the BFB tests for an obnoxious reason - that test compiles each commit without cleaning the build, so the baseline commit had -fopenmp and compiled with openmp stuff enabled, but then the subsequent commits had it turned off, but no changes in the files, so it didn't recompile with it off, and only turned it off in the linking stage, causing a build error. RESOLVED:320551df13ee84bdb9280db0be788a36e1f03494 RESOLVED:6c0201d44694fadf7f4bb0d4d58c3a9871096a22 RESOLVED:26644de2ea83ee6335b273f54dd57afc8f6f4b0c</msg><path><editType>edit</editType><file>compile/config/linux_x86_64_gfortran.bash</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>571</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/571/</url></nextBuild><previousBuild><number>569</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/569/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>569</buildNumber><marked><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><branch><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><branch><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><branch><SHA1>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#569</displayName><duration>3413329</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #569</fullDisplayName><id>569</id><keepLog>false</keepLog><number>569</number><queueId>11556</queueId><result>FAILURE</result><timestamp>1759480147839</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/569/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>eac573b2f186d900e285d06c2fd5a933316b7c4e</commitId><timestamp>1759432819000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding variables to openacc data statements. Without this, the code crashes when using the GPU with l_godunov_upwind_xpyp_ta=.true.
</comment><date>2025-10-02 14:20:19 -0500</date><id>eac573b2f186d900e285d06c2fd5a933316b7c4e</id><msg>Adding variables to openacc data statements. Without this, the code crashes when using the GPU with l_godunov_upwind_xpyp_ta=.true.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_nvhpc.bash</affectedPath><affectedPath>compile/config/linux_x86_64_gfortran.bash</affectedPath><affectedPath>compile/config/linux_x86_64_ifort_debug.bash</affectedPath><affectedPath>compile/config/linux_x86_64_nvhpc_gpu_openacc.bash</affectedPath><affectedPath>compile/config/linux_x86_64_nvhpc_debug.bash</affectedPath><commitId>320551df13ee84bdb9280db0be788a36e1f03494</commitId><timestamp>1759433151000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Modifying compiler configurations (mainly optimization level) in order to prepare for switching scipts and tests to cmake, specifically separating out this BIT_CHANGING commit from the rest
</comment><date>2025-10-02 14:25:51 -0500</date><id>320551df13ee84bdb9280db0be788a36e1f03494</id><msg>Modifying compiler configurations (mainly optimization level) in order to prepare for switching scipts and tests to cmake, specifically separating out this BIT_CHANGING commit from the rest</msg><path><editType>edit</editType><file>compile/config/linux_x86_64_gfortran.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_ifort_debug.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc_gpu_openacc.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc_debug.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>26644de2ea83ee6335b273f54dd57afc8f6f4b0c</commitId><timestamp>1759438529000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>thlm_ed and rtm_ed caused GPU errors since those variables were added to a acc loop, but never added to the acc data statement. This change makes it so they're only calculated on the CPU, since they are only used for stats, fixing the issue without adding the GPU memory footprint.
</comment><date>2025-10-02 15:55:29 -0500</date><id>26644de2ea83ee6335b273f54dd57afc8f6f4b0c</id><msg>thlm_ed and rtm_ed caused GPU errors since those variables were added to a acc loop, but never added to the acc data statement. This change makes it so they're only calculated on the CPU, since they are only used for stats, fixing the issue without adding the GPU memory footprint.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><commitId>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</commitId><timestamp>1759445263000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding -Mstack_arrays to the nvfortran flags causes us to use more stack space, which means we need to allow processes to use more stack space (when using lots of columns, since that increases memory footprint). We do by using using 'ulimit BIGNUMBER'.
</comment><date>2025-10-02 17:47:43 -0500</date><id>6c0201d44694fadf7f4bb0d4d58c3a9871096a22</id><msg>Adding -Mstack_arrays to the nvfortran flags causes us to use more stack space, which means we need to allow processes to use more stack space (when using lots of columns, since that increases memory footprint). We do by using using 'ulimit BIGNUMBER'.</msg><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfile</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>570</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/570/</url></nextBuild><previousBuild><number>568</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/568/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>568</buildNumber><marked><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><branch><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><branch><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><branch><SHA1>def788b540d3bf4995b1deefeb077e198906f158</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#568</displayName><duration>2308601</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #568</fullDisplayName><id>568</id><keepLog>false</keepLog><number>568</number><queueId>11317</queueId><result>SUCCESS</result><timestamp>1759393747081</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/568/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_restart_test.bash</affectedPath><commitId>1d2f7cf2618dd274b5745f2d82b23fdbba461c07</commitId><timestamp>1759353353000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making restart test not overwrite time_initial. The time_initial should be defined by the _model.in file and not overwritten, but this script was setting time_initial to time_restart, which resulted in the initial iteration value (iinit) to be 1 in the restart regardless of the restart time.
</comment><date>2025-10-01 16:15:53 -0500</date><id>1d2f7cf2618dd274b5745f2d82b23fdbba461c07</id><msg>Making restart test not overwrite time_initial. The time_initial should be defined by the _model.in file and not overwritten, but this script was setting time_initial to time_restart, which resulted in the initial iteration value (iinit) to be 1 in the restart regardless of the restart time.</msg><path><editType>edit</editType><file>run_scripts/run_restart_test.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><commitId>def788b540d3bf4995b1deefeb077e198906f158</commitId><timestamp>1759358185000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making the l_random_k_lh_start set the random generator seed before generating a random. This should fix the generalized grid test, which failed for the only flag set that turned on l_random_k_lh_start. Before, the test passed because we used the same random seed for all timesteps, preventing differences in the random call. But now we use a different seed each timestep, causing differences. To ensure reproducibility, we use the seed each timestep to generate rand_pool, which is an effective solution, but we need to do that for the rand_integer_in_range call in the l_random_k_lh_start code for the same reason. Since this does change the random that comes out, this is BIT_CHANGING, but only for runs using both SILHS and l_random_k_lh_start=.true.
</comment><date>2025-10-01 17:36:25 -0500</date><id>def788b540d3bf4995b1deefeb077e198906f158</id><msg>Making the l_random_k_lh_start set the random generator seed before generating a random. This should fix the generalized grid test, which failed for the only flag set that turned on l_random_k_lh_start. Before, the test passed because we used the same random seed for all timesteps, preventing differences in the random call. But now we use a different seed each timestep, causing differences. To ensure reproducibility, we use the seed each timestep to generate rand_pool, which is an effective solution, but we need to do that for the rand_integer_in_range call in the l_random_k_lh_start code for the same reason. Since this does change the random that comes out, this is BIT_CHANGING, but only for runs using both SILHS and l_random_k_lh_start=.true.</msg><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>569</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/569/</url></nextBuild><previousBuild><number>567</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/567/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>567</buildNumber><marked><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><branch><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><branch><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><branch><SHA1>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#567</displayName><duration>2748577</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #567</fullDisplayName><id>567</id><keepLog>false</keepLog><number>567</number><queueId>11229</queueId><result>SUCCESS</result><timestamp>1759307346965</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/567/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/pdf_hydromet_microphys_wrapper.F90</affectedPath><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><commitId>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</commitId><timestamp>1759289999000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>SILHS reproducibility (#1258)

* Making the SILHS random number generator on GPUs more reproducible by relying on the lh_seed input every call, which is the same as how the CPU randoms work. Also ensuring that the seed changes each timestep, just to prevent generating the same randoms on different timesteps. Since this does change the randoms, it is BIT_CHANGING for silhs enabled runs.

* Improving comment
</comment><date>2025-09-30 22:39:59 -0500</date><id>9fed3afd3153c67a4c38a1f11d741cea5cac1df0</id><msg>SILHS reproducibility (#1258)</msg><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path><path><editType>edit</editType><file>src/pdf_hydromet_microphys_wrapper.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>568</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/568/</url></nextBuild><previousBuild><number>566</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/566/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>566</buildNumber><marked><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><branch><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><branch><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><branch><SHA1>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#566</displayName><duration>742939</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #566</fullDisplayName><id>566</id><keepLog>false</keepLog><number>566</number><queueId>11155</queueId><result>SUCCESS</result><timestamp>1759220947615</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/566/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</commitId><timestamp>1759173670000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Bug fix. This is BIT_CHANGING, but only on GPUs and only when l_soil_veg=.true. (which is only gabls3 currently).
</comment><date>2025-09-29 14:21:10 -0500</date><id>15d2cb2c130a1c17d3869f04b9eba2d5c287a455</id><msg>Bug fix. This is BIT_CHANGING, but only on GPUs and only when l_soil_veg=.true. (which is only gabls3 currently).</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>567</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/567/</url></nextBuild><previousBuild><number>565</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/565/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>565</buildNumber><marked><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><branch><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><branch><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><branch><SHA1>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#565</displayName><duration>2064732</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #565</fullDisplayName><id>565</id><keepLog>false</keepLog><number>565</number><queueId>11087</queueId><result>SUCCESS</result><timestamp>1759048148353</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/565/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/constants_clubb.F90</affectedPath><commitId>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</commitId><timestamp>1758974591000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Change tolerance in way that affects only single precision builds (#1256)

This fixes a problem with precip_frac exceeding a bound in single precision.  The code change is BIT_CHANGING for single precision, but V. Larson wouldn't expect it to be bit changing for double precision, although V. Larson hasn't checked.
</comment><date>2025-09-27 07:03:11 -0500</date><id>1bc1aba5ac2dbd0fab0dbf870b7d8616fbf9d462</id><msg>Change tolerance in way that affects only single precision builds (#1256)</msg><path><editType>edit</editType><file>src/CLUBB_core/constants_clubb.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>566</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/566/</url></nextBuild><previousBuild><number>564</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/564/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>564</buildNumber><marked><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><branch><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><branch><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><branch><SHA1>4aa7da34e62d33f881f92c049f1060250a818a7a</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#564</displayName><duration>2077514</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #564</fullDisplayName><id>564</id><keepLog>false</keepLog><number>564</number><queueId>10997</queueId><result>SUCCESS</result><timestamp>1758961748619</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/564/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/grid_adaptation_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><commitId>4aa7da34e62d33f881f92c049f1060250a818a7a</commitId><timestamp>1758908234000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Remove module vars from grid_adaptation_module (#1255)

* removed fixed_min_gr_dens module variables

* remove gr_dens_old_global variables

* remove counter and cumulative module variables
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* Using epsilon() to help check precip_frac against precip_frac_tol

* Using clubb version of eps for checks

Including BIT_CHANGING:06288ac66a3a26013c135d8aef776cc99202f64f because a ifort compiler option changed, and that changes the results. Otherwise it was all BFB.
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cmake update (#1253)

* Initial cmake additions

* Reworking dependency handling and toolchains.

* Improvements, intel, gfortran, and nvfortran work with and without debugging, and nvfortran works with openacc or openmp too.

* Small changes to toolchains

* Little various improvements

* Making ctests work

* Reworking ctests, we have decided to make the ctests run a small number of quick cases/tests just to facilitate development.

* Introducing ctests. Big script updates - run_scm.py and compile.py are new

* Introducing run_scm.py to replace run_scm.bash and CLUBBStandardsCheck.py to replace CLUBBStandardsCheck.pl. The new CLUBBStandardsCheck.py is much faster and should be even more capable at detecting issues than the perl version, it also has improved readability. The new run_scm.py is way more capable and managable than the bash version, it's used now in the new ctests. Also, the compile script has improved functionality, and ctests can be invoked when adding -run_tests to the compile.py call. Also the whole system supports maintaining builds with multiple compilers now, e.g. using nvfortran then ifx will not overwrite the nvfortran version now, and the new run_scm.py is smart enough to choose the right one depending on the compiler loaded.

* Small changes and adding a -legacy flag to run_scm.py to run the bin/clubb_standalone version from the excruciatingly old compilation system.

* Small cleanup and Cmake file simplifications - more to come

* Mostly cleanup. Moving stuff around to put it in better places, renaming, removing unnecessary parts, etc.

* More cleanup and adding comments

* Hopefully final cleanup

* Small bug fix

* Small changes and new jenkins test

* Small fix

* Now that our source checking scripts return error codes, we have to ignore them in this make file. This doesn't change their output at all, but causes the error code to be ignored

* Accidentally removed output dir

* Small fix to jenkins test

* Small fix to jenkins test

* Small fix to jenkins test

* Small fix to jenkins test

* Compile script improvements and new run_thread_test.py to replace bash version.

* Changing default ENABLE_OMP to default off, and changing the default executable used by the new python version of the thread test to use the cmake install by default.

* Making more general cmake test to test various compile options.

* Making ctests output better in compile.py and making new jenkins test a little fancier.

* Small fix to jenkins test

* Small fix to jenkins test

* Small fix to jenkins test

* Small fix to jenkins test

* Reverting some of the fancyness of new test

larson-group/clubb#1117
</comment><date>2025-09-24 17:44:14 -0500</date><id>06288ac66a3a26013c135d8aef776cc99202f64f</id><msg>The cmake update (#1253)</msg><path><editType>add</editType><file>jenkins_tests/clubb_cmake_test/Jenkinsfile</file></path><path><editType>add</editType><file>run_scripts/run_thread_test.py</file></path><path><editType>add</editType><file>cmake/deps/NetcdfFortranDependency.cmake</file></path><path><editType>add</editType><file>src/Microphys_utils/CMakeLists.txt</file></path><path><editType>add</editType><file>src/COAMPS_microphys/CMakeLists.txt</file></path><path><editType>edit</editType><file>.gitignore</file></path><path><editType>edit</editType><file>output/.gitignore</file></path><path><editType>add</editType><file>src/Morrison_microphys/CMakeLists.txt</file></path><path><editType>add</editType><file>src/SCM_Activation/CMakeLists.txt</file></path><path><editType>add</editType><file>cmake/deps/OpenMPDependency.cmake</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>add</editType><file>cmake/toolchains/linux_x86_64_nvfortran.cmake</file></path><path><editType>add</editType><file>src/BUGSrad/CMakeLists.txt</file></path><path><editType>add</editType><file>src/Lapack/Lapack_shared/CMakeLists.txt</file></path><path><editType>add</editType><file>src/CMakeLists.txt</file></path><path><editType>edit</editType><file>utilities/CLUBBStandardsCheck.pl</file></path><path><editType>add</editType><file>src/G_unit_test_types/CMakeLists.txt</file></path><path><editType>add</editType><file>cmake/toolchains/darwin_arm64_gfortran.cmake</file></path><path><editType>add</editType><file>jenkins_tests/clubb_cmake_output_matching/Jenkinsfile</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>add</editType><file>CMakeLists.txt</file></path><path><editType>add</editType><file>run_scripts/run_scm.py</file></path><path><editType>edit</editType><file>compile/compile.bash</file></path><path><editType>add</editType><file>src/Benchmark_cases/CMakeLists.txt</file></path><path><editType>edit</editType><file>run_scripts/create_multi_col_params.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm.bash</file></path><path><editType>add</editType><file>src/Lapack/Lapack_double/CMakeLists.txt</file></path><path><editType>add</editType><file>src/KK_microphys/CMakeLists.txt</file></path><path><editType>add</editType><file>cmake/toolchains/linux_x86_64_ifx.cmake</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_ifort.bash</file></path><path><editType>edit</editType><file>utilities/check_for_missing_threadprivate.py</file></path><path><editType>add</editType><file>cmake/toolchains/linux_x86_64_gfortran.cmake</file></path><path><editType>add</editType><file>compile.py</file></path><path><editType>add</editType><file>BUILD.md</file></path><path><editType>add</editType><file>cmake/toolchains/darwin_x86_64_gfortran.cmake</file></path><path><editType>add</editType><file>src/CLUBB_core/CMakeLists.txt</file></path><path><editType>add</editType><file>src/Numerical_recipes/CMakeLists.txt</file></path><path><editType>add</editType><file>utilities/CLUBBStandardsCheck.py</file></path><path><editType>add</editType><file>cmake/utils/CPPDefinitions.cmake</file></path><path><editType>add</editType><file>src/Lapack/Lapack_single/CMakeLists.txt</file></path><path><editType>add</editType><file>src/SILHS/CMakeLists.txt</file></path><path><editType>add</editType><file>src/Lapack/CMakeLists.txt</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile.py</affectedPath><commitId>85532ccf3c52c4770c4a11029719bf885e96df54</commitId><timestamp>1758755458000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making cmake only optionally use ninja. Now we only use it if it's available.
</comment><date>2025-09-24 18:10:58 -0500</date><id>85532ccf3c52c4770c4a11029719bf885e96df54</id><msg>Making cmake only optionally use ninja. Now we only use it if it's available.</msg><path><editType>edit</editType><file>compile.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>563</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/563/</url></nextBuild><previousBuild><number>561</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/561/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>561</buildNumber><marked><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><branch><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><branch><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><branch><SHA1>cfd36718c8a48ad02f35a4805ebab6108914d470</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#561</displayName><duration>1924309</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #561</fullDisplayName><id>561</id><keepLog>false</keepLog><number>561</number><queueId>10702</queueId><result>SUCCESS</result><timestamp>1758702548630</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/561/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>src/CLUBB_core/stats_variables.F90</affectedPath><affectedPath>input/stats/all_stats.in</affectedPath><commitId>cfd36718c8a48ad02f35a4805ebab6108914d470</commitId><timestamp>1758642876000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Adding expldiff budget terms for thlm and rtm (#1252)

* Adding expldiff budget terms for thlm and rtm

* Removing unintentional line.

* Fixing initialization-to-zero problem

* Adding some comments.

* Adding thlm_ed and rtm_ed to standard_stats.in

* Adding thlm_ed and rtm_ed to all_stats.in

* Fixing two bugs. Budget balance test passes and results are b4b.

This commit is BIT_CHANGING, but only because it adds additional
stats fields to the _zt.nc files. Answers would only change if
l_do_expldiff_rtm_thlm=T.
</comment><date>2025-09-23 09:54:36 -0600</date><id>cfd36718c8a48ad02f35a4805ebab6108914d470</id><msg>Adding expldiff budget terms for thlm and rtm 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in the hopes of reducing the differences in surface precipitation between the CPU and GPU runs.
</comment><date>2025-08-09 14:28:43 -0500</date><id>b5ec2335bc0cf95dbbe1f48a0043bb792a72d3c6</id><msg>Increase lh_num_samples to 64 for LBA case</msg><path><editType>edit</editType><file>input/case_setups/lba_model.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>License.txt</affectedPath><commitId>91ec079057dd95651c032d832845b40e73e8ac21</commitId><timestamp>1754768284000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Update License.txt in order to note that BIT_CHANGING:b5ec2335bc0cf95dbbe1f48a0043bb792a72d3c6
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grid test.
</comment><date>2025-05-23 13:13:53 -0500</date><id>dd5f915658016e9a8b64128024eebaf4c7d24318</id><msg>Finished my notes, documentation, and instructions for the generalized</msg><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>557</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/557/</url></nextBuild><previousBuild><number>555</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/555/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>555</buildNumber><marked><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><branch><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><branch><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><branch><SHA1>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#555</displayName><duration>1212704</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #555</fullDisplayName><id>555</id><keepLog>false</keepLog><number>555</number><queueId>10332</queueId><result>SUCCESS</result><timestamp>1747988947799</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/555/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/generalized_grid_test.F90</affectedPath><commitId>ab83782970ee2389c03e0b387abc35b6452418bc</commitId><timestamp>1747931098000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I start adding some notes on grid generalization.
</comment><date>2025-05-22 11:24:58 -0500</date><id>ab83782970ee2389c03e0b387abc35b6452418bc</id><msg>I start adding some notes on grid generalization.</msg><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/Benchmark_cases/atex.F90</affectedPath><affectedPath>src/CLUBB_core/output_netcdf.F90</affectedPath><commitId>01cd6d52d06689c704a7dc1b8239f1a6a82db237</commitId><timestamp>1747955296000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>fix precision error of reals
</comment><date>2025-05-22 18:08:16 -0500</date><id>01cd6d52d06689c704a7dc1b8239f1a6a82db237</id><msg>fix precision error of reals</msg><path><editType>edit</editType><file>src/Benchmark_cases/atex.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/output_netcdf.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/remapping.F90</affectedPath><affectedPath>src/CLUBB_core/grid_adaptation.F90</affectedPath><affectedPath>src/CLUBB_core/remapping_module.F90</affectedPath><affectedPath>src/CLUBB_core/grid_adaptation_module.F90</affectedPath><commitId>f1798e4237187cb3f36a25c73293c27e6453b0eb</commitId><timestamp>1747962119000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/0-freundlich-adenin</absoluteUrl><fullName>0-freundlich-adenin</fullName></author><authorEmail>0-freundlich-adenin@icloud.com</authorEmail><comment>rename grid_adaptation and remapping modules
</comment><date>2025-05-22 20:01:59 -0500</date><id>f1798e4237187cb3f36a25c73293c27e6453b0eb</id><msg>rename grid_adaptation and remapping modules</msg><path><editType>delete</editType><file>src/CLUBB_core/remapping.F90</file></path><path><editType>add</editType><file>src/CLUBB_core/grid_adaptation_module.F90</file></path><path><editType>add</editType><file>src/CLUBB_core/remapping_module.F90</file></path><path><editType>delete</editType><file>src/CLUBB_core/grid_adaptation.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/grid_adaptation_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><commitId>003b6cf728915e52cba23dc54bd3ae5ea9ee6364</commitId><timestamp>1747963509000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/0-freundlich-adenin</absoluteUrl><fullName>0-freundlich-adenin</fullName></author><authorEmail>0-freundlich-adenin@icloud.com</authorEmail><comment>add fix for grid generalization
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* add tunable parameter interp_from_dycore_grid_method

* add dycore interpolation to atex case with conservative remapping by ullrich

* remove new gpu commands

* add acc annotation for gpu

* remove acc annotation again

* add acc annotation for parallel loop

* add acc annotations for parallel loop execution

* change remapping subroutine to take number of levels and levels as input instead of whole grid object

* add more general functions to interpolate

* add and refactor functions for remapping values given on zm levels

* fix compiler errors and refactoring to stay under 100 chars per line

* remove TODOs and used new interpolating function in interpolate_forcings

* add functions for adaptive grid generation and grid density function normalization

* add conservative ullrich remapping to cases with forcing time dependent inputs

* add grid adaptation and flag

* clean up and add warning for case when remapping from dycore flag cannot be used

* some refactoring

* add logical flag for dycore and renamed flags for dycore and grid adaptation

* remove ifdefs

* refactoring

* add units

* changed Lscale to inverse

* add write to file for grid adaptation (still WIP)

* clean up

* change parameter for grid adaptation and add file and plot script for grid adaptation

* add script for animation

* add e3sm dycore grid

* refactoring for efficiency

* small fix for grid adapt plot script

* add new grid adaptation method with prescribed minimum density profile

* fix call to setup_grid

* add gabls2 case

* add refinement criterion and adaptation trigger

* small fix and add minimum grid density profile to animation

* add grid density to pyplots

* add general refinement criteria for astex and gabls2 case (and arm)

* update create_evenly_grid script

* unfinished save

* WIP: save progress

* save working configuration

* save working config without Lscale

* save working config wo the use of Lscale

* change call to map1_ppm to use correct iv parameter and order 4

* save code for results in thesis

* add code for results

* refactor remapping module for grid adaptation

* add list of functions/subroutines to remapping module

* adjust use statements

* add model files for arm, astex and gabls2

* refactor grid_adaptation module

* refactor and adjust tim stopping in clubb_driver

* clean up

* clean up

* add grids

* add scripts

* add changes made to pyplotgen to generate plots for paper

* add configurable model flags file that was used to obtain results

* clean up and save tunable parameters file

* fix error

* fix error

* add grid adapt output for debug level 2

* change dycore grid

* add plot generation script for paper plots

* add small changes

* add normalization explaination plot to paper plots script

* fix plot

* clean up for stats output

* add comment

* fix use of clubb_at_least_debug_api

* small deallocation fix

* fix merge problems

* revert changes made to test grid adaptation

* revert tunable_parameters for Lscale

* revert changes made to create plots for grid adaptation

* add new line

* add new line

* revert changes

* revert changes made to generate grid adaptation plots
</comment><date>2025-05-21 17:32:02 -0500</date><id>25d5bed515ab3d6e11e43419ef1fc3a71777e545</id><msg>Merge grid adaptation implementation (#1249)</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/src/ContourPanel.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/constants_clubb.F90</file></path><path><editType>edit</editType><file>src/time_dependent_input.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zm_module.F90</file></path><path><editType>add</editType><file>input/grid/gr_min.grd</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>src/Benchmark_cases/atex.F90</file></path><path><editType>add</editType><file>src/CLUBB_core/remapping.F90</file></path><path><editType>add</editType><file>postprocessing/grid_plot.py</file></path><path><editType>add</editType><file>input/grid/dycore.grd</file></path><path><editType>edit</editType><file>src/CLUBB_core/interpolation.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_adaptation.F90</file></path><path><editType>add</editType><file>postprocessing/create_grid_adaptation_plot.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/output_netcdf.F90</file></path><path><editType>add</editType><file>input/grid/dycore_e3sm.grd</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>555</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/555/</url></nextBuild><previousBuild><number>553</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/553/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>553</buildNumber><marked><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><branch><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><branch><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><branch><SHA1>df1dbd76ba2ecb03a34137394fbb108eba6a3406</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#553</displayName><duration>914971</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #553</fullDisplayName><id>553</id><keepLog>false</keepLog><number>553</number><queueId>10062</queueId><result>SUCCESS</result><timestamp>1747729750751</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/553/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><affectedPath>run_scripts/run_scm_all.bash</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><commitId>c379fef293da5e06976bee216437ffdc1b396f26</commitId><timestamp>1747711812000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding pass/fail statements specific to the generalized grid test
to the code.
</comment><date>2025-05-19 22:30:12 -0500</date><id>c379fef293da5e06976bee216437ffdc1b396f26</id><msg>I am adding pass/fail statements specific to the generalized grid test</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/run_scm_all.bash</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><commitId>ec0644cf80b501f02e9f43a32d39c9aeb784d669</commitId><timestamp>1747714302000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>For the long-duration clubb_generalized_vertical_grid_test, I am
shortening the duration of the MC3E runs to half their normal number
of timesteps in order to cut down on the time it takes to do the run.
</comment><date>2025-05-19 23:11:42 -0500</date><id>ec0644cf80b501f02e9f43a32d39c9aeb784d669</id><msg>For the long-duration clubb_generalized_vertical_grid_test, I am</msg><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><commitId>b5929aa672244c4324f925e9c05fb2eb39baa1be</commitId><timestamp>1747720486000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>zm and zt were mixed up in the error prints argument list.
</comment><date>2025-05-20 00:54:46 -0500</date><id>b5929aa672244c4324f925e9c05fb2eb39baa1be</id><msg>zm and zt were mixed up in the error prints argument list.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>554</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/554/</url></nextBuild><previousBuild><number>552</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/552/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>552</buildNumber><marked><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><branch><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><branch><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><branch><SHA1>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#552</displayName><duration>698356</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #552</fullDisplayName><id>552</id><keepLog>false</keepLog><number>552</number><queueId>9986</queueId><result>SUCCESS</result><timestamp>1747470548337</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/552/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</commitId><timestamp>1747434289000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I updated run_bindiff_w_flags_config_host_flags to add flag set 3,
which, from what I can tell, contains the default CLUBB flag settings
for E3SM in the maint-3.0 branch.
</comment><date>2025-05-16 17:24:49 -0500</date><id>6011fadbf84bd9e26f1105695ab4e40d72ae3f71</id><msg>I updated run_bindiff_w_flags_config_host_flags to add flag set 3,</msg><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_host_flags.json</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>553</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/553/</url></nextBuild><previousBuild><number>551</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/551/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>551</buildNumber><marked><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><branch><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><branch><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><branch><SHA1>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#551</displayName><duration>910340</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #551</fullDisplayName><id>551</id><keepLog>false</keepLog><number>551</number><queueId>9913</queueId><result>SUCCESS</result><timestamp>1747297750054</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/551/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</affectedPath><commitId>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</commitId><timestamp>1747245977000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fix jenkins clubb error handling output (#1247)

* Modified CLUBB error handling Jenkins test similar to changes in new CAM CLUBB test
CAM pull request larson-group/cam#195

Changes to Jenkinsfile for clubb_error_handling_gfortran_test so output is cleaner and more descriptive.
</comment><date>2025-05-14 13:06:17 -0500</date><id>f9b793fc2d666ae40a33e3e574558b6ea39c78d3</id><msg>Fix jenkins clubb error handling output (#1247)</msg><path><editType>edit</editType><file>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>552</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/552/</url></nextBuild><previousBuild><number>550</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/550/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_closure_module.F90</affectedPath><affectedPath>src/Benchmark_cases/atex.F90</affectedPath><affectedPath>src/CLUBB_core/pdf_parameter_module.F90</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/CLUBB_core/sponge_layer_damping.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/stats_type_utilities.F90</affectedPath><affectedPath>src/CLUBB_core/error_code.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/CLUBB_core/output_netcdf.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/time_dependent_input.F90</affectedPath><affectedPath>src/advance_microphys_module.F90</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>src/bugsrad_driver.F90</affectedPath><affectedPath>src/SILHS/silhs_importance_sample_module.F90</affectedPath><affectedPath>src/CLUBB_core/matrix_operations.F90</affectedPath><affectedPath>src/generalized_grid_test.F90</affectedPath><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><affectedPath>src/Benchmark_cases/nov11.F90</affectedPath><affectedPath>src/microphys_init_cleanup.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/matrix_solver_wrapper.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/setup_clubb_pdf_params.F90</affectedPath><affectedPath>src/CLUBB_core/calendar.F90</affectedPath><affectedPath>src/CLUBB_core/pos_definite_module.F90</affectedPath><affectedPath>src/CLUBB_core/diagnose_correlations_module.F90</affectedPath><affectedPath>src/CLUBB_core/interpolation.F90</affectedPath><affectedPath>src/BUGSrad/two_rt_sw.F</affectedPath><affectedPath>src/lh_microphys_driver_module.F90</affectedPath><affectedPath>src/CLUBB_core/grid_adaptation.F90</affectedPath><affectedPath>src/CLUBB_core/stats_clubb_utilities.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>src/CLUBB_core/hydromet_pdf_parameter_module.F90</affectedPath><affectedPath>src/CLUBB_core/output_grads.F90</affectedPath><affectedPath>src/BUGSrad/two_rt_lw.F</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/cos_solar_zen_module.F90</affectedPath><affectedPath>src/CLUBB_core/numerical_check.F90</affectedPath><affectedPath>src/Benchmark_cases/mpace_a.F90</affectedPath><affectedPath>src/CLUBB_core/lapack_wrap.F90</affectedPath><affectedPath>src/CLUBB_core/precipitation_fraction.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/jacobian.F90</affectedPath><affectedPath>src/simple_rad_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/morrison_microphys_module.F90</affectedPath><affectedPath>src/CLUBB_core/corr_varnce_module.F90</affectedPath><affectedPath>src/sounding.F90</affectedPath><affectedPath>src/CLUBB_core/fill_holes.F90</affectedPath><affectedPath>src/error.F90</affectedPath><affectedPath>src/pdf_hydromet_microphys_wrapper.F90</affectedPath><affectedPath>src/coamps_microphys_driver_module.F90</affectedPath><commitId>942e02ac28ca0981f9a54f4e56d8fc8a16b49b65</commitId><timestamp>1747158959000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removed simple wrappers from clubb_api_module (#1245)

* Removed simple wrappers from clubb_api_module
CLUBB ticket #1223

Removed wrappers and renamed procedures in original modules:
- cleanup_clubb_core_api
- compute_current_date_api
- set_clubb_debug_level_api
- clubb_at_least_debug_level_api
- lin_interpolate_on_grid_api
- pack_pdf_params_api
- unpack_pdf_params_api
- init_precip_fracs_api
- init_pdf_implicit_coefs_terms_api
- stats_end_timestep_api
- print_clubb_config_flags_api
- initialize_tau_sponge_damp_api
- finalize_tau_sponge_damp_api
</comment><date>2025-05-13 12:55:59 -0500</date><id>942e02ac28ca0981f9a54f4e56d8fc8a16b49b65</id><msg>Removed simple wrappers from clubb_api_module (#1245)</msg><path><editType>edit</editType><file>src/CLUBB_core/matrix_solver_wrapper.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>src/Benchmark_cases/nov11.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/matrix_operations.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/calendar.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sfc_varnce_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>src/cos_solar_zen_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/corr_varnce_module.F90</file></path><path><editType>edit</editType><file>src/BUGSrad/two_rt_sw.F</file></path><path><editType>edit</editType><file>src/Benchmark_cases/mpace_a.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/lapack_wrap.F90</file></path><path><editType>edit</editType><file>src/advance_microphys_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/diagnose_correlations_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/sounding.F90</file></path><path><editType>edit</editType><file>src/microphys_init_cleanup.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/fill_holes.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/interpolation.F90</file></path><path><editType>edit</editType><file>src/coamps_microphys_driver_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_adaptation.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/simple_rad_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/hydromet_pdf_parameter_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/pdf_closure_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/silhs_importance_sample_module.F90</file></path><path><editType>edit</editType><file>src/bugsrad_driver.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/setup_clubb_pdf_params.F90</file></path><path><editType>edit</editType><file>src/lh_microphys_driver_module.F90</file></path><path><editType>edit</editType><file>src/pdf_hydromet_microphys_wrapper.F90</file></path><path><editType>edit</editType><file>src/time_dependent_input.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_type_utilities.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/jacobian.F90</file></path><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/numerical_check.F90</file></path><path><editType>edit</editType><file>src/BUGSrad/two_rt_lw.F</file></path><path><editType>edit</editType><file>src/CLUBB_core/precipitation_fraction.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sponge_layer_damping.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/error_code.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/output_grads.F90</file></path><path><editType>edit</editType><file>src/error.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/pdf_parameter_module.F90</file></path><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/output_netcdf.F90</file></path><path><editType>edit</editType><file>src/Benchmark_cases/atex.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/pos_definite_module.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/morrison_microphys_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson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_class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#549</displayName><duration>1045709</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #549</fullDisplayName><id>549</id><keepLog>false</keepLog><number>549</number><queueId>9678</queueId><result>SUCCESS</result><timestamp>1746865750126</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/549/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/lapack_wrap.F90</affectedPath><commitId>1f2fc1fc313f86736c95e12472ed0d9886a9c46c</commitId><timestamp>1746812441000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixed and equalized NaN checks in lapack_wrap (#1246)

See CAM pull request larson-group/CAM#188

Added debug_level_at_least(0) checks where missing and changed debug_level(1) to 0 in lapack_band_solve,
so the new CAM CLUBB error handling test can do what it's supposed to do.
</comment><date>2025-05-09 12:40:41 -0500</date><id>1f2fc1fc313f86736c95e12472ed0d9886a9c46c</id><msg>Fixed and equalized NaN checks in lapack_wrap (#1246)</msg><path><editType>edit</editType><file>src/CLUBB_core/lapack_wrap.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>550</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/550/</url></nextBuild><previousBuild><number>548</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/548/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>548</buildNumber><marked><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><branch><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><branch><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><branch><SHA1>b7e8ad326ddae6128dfc222922dc10c1a8275700</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#548</displayName><duration>1334011</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #548</fullDisplayName><id>548</id><keepLog>false</keepLog><number>548</number><queueId>9523</queueId><result>SUCCESS</result><timestamp>1746606547889</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/548/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>b7e8ad326ddae6128dfc222922dc10c1a8275700</commitId><timestamp>1746549263000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Cleaning up some grid generalization issues that were found within
l_implemented flag blocks.
</comment><date>2025-05-06 11:34:23 -0500</date><id>b7e8ad326ddae6128dfc222922dc10c1a8275700</id><msg>Cleaning up some grid generalization issues that were found within</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>549</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/549/</url></nextBuild><previousBuild><number>547</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/547/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>547</buildNumber><marked><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#547</displayName><duration>1093877</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #547</fullDisplayName><id>547</id><keepLog>false</keepLog><number>547</number><queueId>9434</queueId><result>SUCCESS</result><timestamp>1746260946839</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/547/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/clubb_standalone.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/time_dependent_input.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/advance_microphys_module.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>run_scripts/run_scm_all.bash</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>1e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f0</commitId><timestamp>1746207443000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Run scm fixes (#1244)

Fixed error output for run?scm?all.bash, added some missing error checks to CLUBB
CLUBB ticket #975

* Fixed error output issues for run_scm_all.bash
- Changed tail $TMP_OUT to cat $TMP_OUT so we can see the entire stderr output of CLUBB in the log
- Added `if allocated` check to subroutine finalize_t_dependent_forcings in time_dependent_input.F90 to avoid runtime errors
- Removed unnecessary write statement in clubb_standalone.F90

* Added missing err_code checks
- Added err_code checks so we don't get false negative error messages
</comment><date>2025-05-02 12:37:23 -0500</date><id>1e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f0</id><msg>Run scm fixes (#1244)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/advance_microphys_module.F90</file></path><path><editType>edit</editType><file>src/clubb_standalone.F90</file></path><path><editType>edit</editType><file>run_scripts/run_scm_all.bash</file></path><path><editType>edit</editType><file>src/time_dependent_input.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>9b42183b3b368cf7c079faf0a7b79eefc159f901</commitId><timestamp>1746214523000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a new .json file for host model flags. Flag set 1 consists
of the current CAM default settings.
</comment><date>2025-05-02 14:35:23 -0500</date><id>9b42183b3b368cf7c079faf0a7b79eefc159f901</id><msg>I am adding a new .json file for host model flags. Flag set 1 consists</msg><path><editType>add</editType><file>run_scripts/run_bindiff_w_flags_config_host_flags.json</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</affectedPath><commitId>d1b42f244d4e38d86e5cf1bea3cbdb38950e094b</commitId><timestamp>1746220666000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a Jenkinsfile for a new CLUBB generalized vertical
grid test that uses flag sets consisting of specialized flag
settings that are found in host models of which CLUBB is a part.
</comment><date>2025-05-02 16:17:46 -0500</date><id>d1b42f244d4e38d86e5cf1bea3cbdb38950e094b</id><msg>I am adding a Jenkinsfile for a new CLUBB generalized vertical</msg><path><editType>add</editType><file>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>f1b430ab343e05a36e916cf1910c78c1a20c177b</commitId><timestamp>1746222050000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a second set of host flags as part of the generalized
vertical grid test for host model flags. Flag set 2 consists of
flag settings that are found in the clubb_silhs_devel branch of CAM.
</comment><date>2025-05-02 16:40:50 -0500</date><id>f1b430ab343e05a36e916cf1910c78c1a20c177b</id><msg>I am adding a second set of host flags as part of the generalized</msg><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_host_flags.json</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>6912ae1620711773f96385ece3b9330fc73daf68</commitId><timestamp>1746222283000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Fixing an error in the previous commit. (lol, good ol' find and replace)
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CLUBB ticket #1223
* Removed renaming operators `=&gt;` from silhs_api_module
This just affected latin_hypercube_2D_output_api and stats_accumulate_lh_api.

* Removed definitions of wrapper subroutines from silhs_api_module
Removed wrappers est_kessler_microphys_api, lh_microphys_var_covar_driver_api, set_default_silhs_config_flags_api, initialize_silhs_config_flags_type_api, print_silhs_config_flags_api, latin_hypercube_2D_close_api from silhs_api_module.
</comment><date>2025-05-01 15:13:38 -0500</date><id>3a3e3d57af0db172255568b51e92976571b7ad42</id><msg>Removed renaming operators `=&gt;` and wrapper subroutines from silhs_api_module (#1240)</msg><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path><path><editType>edit</editType><file>src/pdf_hydromet_microphys_wrapper.F90</file></path><path><editType>edit</editType><file>src/SILHS/est_kessler_microphys_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/silhs_api_module.F90</file></path><path><editType>edit</editType><file>src/lh_microphys_driver_module.F90</file></path><path><editType>edit</editType><file>src/estimate_scm_microphys_module.F90</file></path><path><editType>edit</editType><file>src/microphys_init_cleanup.F90</file></path><path><editType>edit</editType><file>src/SILHS/lh_microphys_var_covar_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/parameters_silhs.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>547</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/547/</url></nextBuild><previousBuild><number>545</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/545/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>545</buildNumber><marked><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><branch><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><branch><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><branch><SHA1>4fb7b70b67db3fa7decde426bed55920a12d7d4e</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#545</displayName><duration>581857</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #545</fullDisplayName><id>545</id><keepLog>false</keepLog><number>545</number><queueId>9282</queueId><result>SUCCESS</result><timestamp>1746001750530</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/545/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/README</affectedPath><commitId>4fb7b70b67db3fa7decde426bed55920a12d7d4e</commitId><timestamp>1745946448000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Changing readme to add BIT_CHANGING:71eb9b3c5fd65c33905f17be8476a1dea89a2511 since that commit was a bug fix, so technically it was bit changing.
</comment><date>2025-04-29 12:07:28 -0500</date><id>4fb7b70b67db3fa7decde426bed55920a12d7d4e</id><msg>Changing readme to add BIT_CHANGING:71eb9b3c5fd65c33905f17be8476a1dea89a2511 since that commit was a bug fix, so technically it was bit changing.</msg><path><editType>edit</editType><file>run_scripts/README</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>546</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/546/</url></nextBuild><previousBuild><number>544</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/544/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>544</buildNumber><marked><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><branch><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><branch><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><branch><SHA1>71eb9b3c5fd65c33905f17be8476a1dea89a2511</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#544</displayName><duration>648252</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #544</fullDisplayName><id>544</id><keepLog>false</keepLog><number>544</number><queueId>9228</queueId><result>SUCCESS</result><timestamp>1745915346498</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/544/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>71eb9b3c5fd65c33905f17be8476a1dea89a2511</commitId><timestamp>1745865214000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Small bug fix that has somehow gone unfound until recently. RESOLVED:f9d92113871bdf87b5e3147db6740ab654dc0967
</comment><date>2025-04-28 13:33:34 -0500</date><id>71eb9b3c5fd65c33905f17be8476a1dea89a2511</id><msg>Small bug fix that has somehow gone unfound until recently. RESOLVED:f9d92113871bdf87b5e3147db6740ab654dc0967</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>545</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/545/</url></nextBuild><previousBuild><number>543</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/543/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>543</buildNumber><marked><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><branch><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><branch><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><branch><SHA1>f9d92113871bdf87b5e3147db6740ab654dc0967</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#543</displayName><duration>528475</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #543</fullDisplayName><id>543</id><keepLog>false</keepLog><number>543</number><queueId>9174</queueId><result>SUCCESS</result><timestamp>1745742548472</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/543/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>f9d92113871bdf87b5e3147db6740ab654dc0967</commitId><timestamp>1745676518000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Technically, the following two commits are not BFB

BIT_CHANGING:a36b7a66d8742e772953fb745dcfb8243120412b
BIT_CHANGING:9371045e8739a4412dbe93f8948aacc9682d4852

but the latter code change undoes the bit-changing effects of the former, and so the net effect is nil.
</comment><date>2025-04-26 09:08:38 -0500</date><id>f9d92113871bdf87b5e3147db6740ab654dc0967</id><msg>Technically, the following two commits are not BFB</msg><path><editType>edit</editType><file>README</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>544</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/544/</url></nextBuild><previousBuild><number>542</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/542/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>542</buildNumber><marked><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><branch><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><branch><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><branch><SHA1>9371045e8739a4412dbe93f8948aacc9682d4852</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#542</displayName><duration>559371</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #542</fullDisplayName><id>542</id><keepLog>false</keepLog><number>542</number><queueId>9104</queueId><result>SUCCESS</result><timestamp>1745656149427</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/542/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_core_flags.json</affectedPath><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><commitId>a36b7a66d8742e772953fb745dcfb8243120412b</commitId><timestamp>1745614161000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Running CLUBB with l_stability_correct_tau_zm = .true. now requires
setting l_damp_wp2_using_em to .false.  Thus, these two settings
now appear together in flag set 9. Since l_damp_wp2_using_em was
already set to .false. for flag set 11, I simply swapped flag sets
for l_damp_wp2_using_em = .false. (moved from flag set 11 to set 9)
and l_C2_cloud_frac = .true. (moved from flag set 9 to set 11).
</comment><date>2025-04-25 15:49:21 -0500</date><id>a36b7a66d8742e772953fb745dcfb8243120412b</id><msg>Running CLUBB with l_stability_correct_tau_zm = .true. now requires</msg><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_core_flags.json</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><commitId>9371045e8739a4412dbe93f8948aacc9682d4852</commitId><timestamp>1745614367000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>These changes were accidentally made during the previous commit. The are
being returned to their normal setting in this commit.
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</comment><date>2025-04-24 14:52:03 -0500</date><id>e4035f733e2b063b4137c59eb357052690af1626</id><msg>Fix segfault involving initialization of CLUBB when l_add_dycore_grid=F</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>6ae905def34beb24f3fbbf571e56fd2e7214d4d5</commitId><timestamp>1745524766000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/sdomke</absoluteUrl><fullName>Steffen Domke</fullName></author><authorEmail>sdomke@uwm.edu</authorEmail><comment>Removed unnecessary print statements in clubb_driver
</comment><date>2025-04-24 14:59:26 -0500</date><id>6ae905def34beb24f3fbbf571e56fd2e7214d4d5</id><msg>Removed unnecessary print statements in clubb_driver</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>28786c5f20191baf6c3f9c3a8934f7f9c7ffc3ff</commitId><timestamp>1745538547000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Err code gpu fix (#1241)

* GPU fix for new err_code system.

* Another small fix for OMP GPU code.
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It's very unclear why the BFB GPU test ever passed without this.</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>541</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/541/</url></nextBuild><previousBuild><number>539</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/539/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.model.Cause$UserIdCause'><shortDescription>Started by user Vince Larson</shortDescription><userId>vlarson</userId><userName>Vince Larson</userName></cause></action><action 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code struct (#1238)

Added err_info type to CLUBB to extend old err_code integer flag
CLUBB ticket #975

Created a new err_info type replacing the old err_code integer.
It contains MPI rank and (OMP) chunk index so we can identify the specific process that caused an error.
It also contains latitude and longitude so a person trying to debug a host model run can pinpoint the column that caused an error.
It contains error headers that combine all the info into a string that can be printed when an error happens.
And it comes with subroutines that handle initialization, value setting, and cleanup.

Host models will be modified accordingly.

Possible TODO: Implement a subroutine that identifies the index of the column with the error after the fact so we can have more specific info at the higher call levels by applying `where` to the err_code member array.
</comment><date>2025-04-23 10:36:08 -0500</date><id>dbf71d44dd03cd50b69bcb1d20378cb5679b9bf8</id><msg>Err code struct 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><commitId>cb9c724afbacef68636111b671d273df57166a6d</commitId><timestamp>1745348257000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I updated adj_low_res_nu for use with a generalized grid. It is
not called from within advance_clubb_core or from within SILHS.
It is not necessary to be generalized for tests within standalone
CLUBB. However, it is necessary to generalize this code for use
within host models, particularly for CAM and E3SM.
</comment><date>2025-04-22 13:57:37 -0500</date><id>cb9c724afbacef68636111b671d273df57166a6d</id><msg>I updated adj_low_res_nu for use with a generalized grid. It is</msg><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/G_unit_test_types/rev_direction_grid_test.F90</affectedPath><commitId>fa5edf3c9549a7bf9b076506514aa7445f322c43</commitId><timestamp>1745356651000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Since the call to adj_low_res_nu is not tested by CLUBB's main
ascending vs descending grid test (since it is not called from
within advance_clubb_core or from SILHS), I added it to the
reverse grid direction G Unit test so that the results from
ascending vs. descending grids get checked.
</comment><date>2025-04-22 16:17:31 -0500</date><id>fa5edf3c9549a7bf9b076506514aa7445f322c43</id><msg>Since the call to adj_low_res_nu is not tested by CLUBB's main</msg><path><editType>edit</editType><file>src/G_unit_test_types/rev_direction_grid_test.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>536</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/536/</url></nextBuild><previousBuild><number>534</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/534/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>534</buildNumber><marked><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><branch><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><branch><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><branch><SHA1>e25ec88b5e538d090d1d634e3602cf637a24251c</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#534</displayName><duration>529132</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #534</fullDisplayName><id>534</id><keepLog>false</keepLog><number>534</number><queueId>8693</queueId><result>SUCCESS</result><timestamp>1744705749195</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/534/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>e25ec88b5e538d090d1d634e3602cf637a24251c</commitId><timestamp>1744653060000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add a blank line to README in order to note BIT_CHANGING:969bc4aa2a1db2664c0f92b98d2df5544c554c32

However, the change is only to stats output, not the answer itself.   See https://github.com/larson-group/clubb/issues/1170#issuecomment-2802019464.
</comment><date>2025-04-14 12:51:00 -0500</date><id>e25ec88b5e538d090d1d634e3602cf637a24251c</id><msg>Add a blank line to README in order to note BIT_CHANGING:969bc4aa2a1db2664c0f92b98d2df5544c554c32</msg><path><editType>edit</editType><file>README</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>535</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/535/</url></nextBuild><previousBuild><number>533</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/533/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.model.Cause$UserIdCause'><shortDescription>Started by user Vince Larson</shortDescription><userId>vlarson</userId><userName>Vince Larson</userName></cause></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>533</buildNumber><marked><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><branch><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><branch><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><branch><SHA1>2f9bef63460fadecdb3f3679ef29d18beafba72e</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#533</displayName><duration>718721</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #533</fullDisplayName><id>533</id><keepLog>false</keepLog><number>533</number><queueId>8581</queueId><result>SUCCESS</result><timestamp>1744225315615</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/533/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/generalized_grid_test.F90</affectedPath><affectedPath>run_scripts/run_bindiff_w_flags_config_core_flags.json</affectedPath><affectedPath>src/SILHS/silhs_api_module.F90</affectedPath><affectedPath>src/CLUBB_core/setup_clubb_pdf_params.F90</affectedPath><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><affectedPath>src/pdf_hydromet_microphys_wrapper.F90</affectedPath><affectedPath>compile/file_list/clubb_model_files</affectedPath><affectedPath>src/CLUBB_core/precipitation_fraction.F90</affectedPath><commitId>2f9bef63460fadecdb3f3679ef29d18beafba72e</commitId><timestamp>1744204547000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Clubb silhs gg (#1239)

* I added new subroutine pdf_hydromet_microphys_prep to encompass
the code that calls the hydrometeor PDF and then ultimately
handles the setup of SILHS sample points when SILHS is in use.

* Placeholder subroutine for SILHS grid generalization test.

* I have now connected the new subroutine to run_clubb. The results
for all cases match bit-for-bit to the previous revision.

* Cleaning up from the refactoring of the hydrometeor PDF and SILHS
code into a wrapper subroutine.

* I'm moving pdf_hydromet_microphys_prep to its own file to avoid
circular dependency once it finally needs to be called from the
generalized grid test code soon.

* Added some code to the SILHS generalized grid test.

* Changes to make this a fully functioning grid generalization test
for the part of the microphysics code that encompasses
setup_pdf_parameters and hydrometeor_mixed_moments.

* I have completed the code for the SILHS generalized grid test.

* I generalized precipitation fraction for ascending vs. descending grid.

* Fixing a bug that I noticed in the precipitation fraction calculation
when the component precip frac calculation was set to option 1
(which is currently not the default).

* The code should now be successfully grid-generalized for SILHS.
The ascending vs descending grid test should work now for all cases.

* Updating the core flags .json file to change some of the SILHS flags.

* I moved the call to advance_clubb_core_api (the default run option)
to the top of the "if" block, ahead of the grid generalization test
option that is now in the "else" block.

* Adding a new, hardwired constant flag called l_ascending_grid and
setting it to true in clubb_driver.F90.

* Keeping lines under 100 characters in length.

* Making it so the ascending vs. descending grid tests pass for the
l_lh_random_start flag.
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</comment><date>2025-03-28 11:59:11 -0500</date><id>9c51ff7531cfb93015cf6eea5b4604a0277a680b</id><msg>Second hot fix for more _init variables that need to be copied in. RESOLVED:ed9ae72a5eb28dbc036dd3e14b9312eea840feac</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>84d6d6251e99a62c6eeb6253dbf3f49c87a207c7</commitId><timestamp>1743206514000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Third hotfix of the day. This last change teased out a sneaky potentially fatal bug for cases using l_cloud_sed=.true., making this a BIT_CHANGING fix. Also need to include BIT_CHANGING:13ad3cfe7872df2fe91250265f4a81baa621a882 because that was a fix to a fatal bug in some cases. Also including some other small fixes that weren't breaking any tests, but might've caused problems in the future.
</comment><date>2025-03-28 19:01:54 -0500</date><id>84d6d6251e99a62c6eeb6253dbf3f49c87a207c7</id><msg>Third hotfix of the day. This last change teased out a sneaky potentially fatal bug for cases using l_cloud_sed=.true., making this a BIT_CHANGING fix. Also need to include BIT_CHANGING:13ad3cfe7872df2fe91250265f4a81baa621a882 because that was a fix to a fatal bug in some cases. Also including some other small fixes that weren't breaking any tests, but might've caused problems in the future.</msg><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>"src/print *, \"thlm_init = \", thlm_init.f90"</affectedPath><commitId>3cd302b61f93039796aa0b1c8cfda1005c3926b2</commitId><timestamp>1743206538000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Removing accidentally added file.
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* Moving stuff around in preparation for preparation for GPUization

* Small modifications, adding explicit loops

* Small bug fix and explicit loop additions

* Removing ngrdcol dimension from initialize_clubb, essentially reverting changes.

* Removing array slicing by using local variables of nzm/nzt dim

* GPUization of initialization variables

* Removing need for single_col versions of the pdf_params, this (weirdly) saves a huge amount of runtime

* Adding comment

* Adding 2D version of various routines, including initialize_clubb, but only calling initialize_clubb with 1 column.

* Fixes to make work with latest clubb changes

* Merging with master
</comment><date>2025-03-27 16:02:35 -0500</date><id>ed9ae72a5eb28dbc036dd3e14b9312eea840feac</id><msg>Clubb driver upgrades (#1225)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>add</editType><file>"src/print *, \"thlm_init = \", thlm_init.f90"</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_driver.F90</affectedPath><commitId>13ad3cfe7872df2fe91250265f4a81baa621a882</commitId><timestamp>1743150057000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Hot fix to GPU code. These _init variables need to be copied to the GPU
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For #910.
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For #910.
</comment><date>2025-03-24 09:05:14 -0500</date><id>6efe77bfc4e96b91f34aa4fd966aa39965f9b30f</id><msg>QuadTune: Rename "setUpInputs" to "setUpConfig".  Rename other variables.  Improve comments in quadtune_driver.py.</msg><path><editType>edit</editType><file>utilities/sens_matrix/config.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/config_example.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>530</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/530/</url></nextBuild><previousBuild><number>528</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/528/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>528</buildNumber><marked><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><branch><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><branch><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><branch><SHA1>969bc4aa2a1db2664c0f92b98d2df5544c554c32</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#528</displayName><duration>688418</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #528</fullDisplayName><id>528</id><keepLog>false</keepLog><number>528</number><queueId>8229</queueId><result>SUCCESS</result><timestamp>1742718547691</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/528/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/config.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/config_example.py</affectedPath><affectedPath>utilities/sens_matrix/quadtune_driver.py</affectedPath><affectedPath>utilities/sens_matrix/create_nonbootstrap_figs.py</affectedPath><commitId>e15a1b9f10f800c4d1c59f2f2a383b812e4f4c15</commitId><timestamp>1742651150000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Create config file where a user can input "namelist" info about his obs and simulations.  Also add an example config file so that the user can keep multiple namelists.  Do minor refactorings.

For #910.
</comment><date>2025-03-22 08:45:50 -0500</date><id>e15a1b9f10f800c4d1c59f2f2a383b812e4f4c15</id><msg>QuadTune: Create config file where a user can input "namelist" info about his obs and simulations.  Also add an example config file so that the user can keep multiple namelists.  Do minor refactorings.</msg><path><editType>add</editType><file>utilities/sens_matrix/config.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_nonbootstrap_figs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_inputs.py</file></path><path><editType>add</editType><file>utilities/sens_matrix/config_example.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/config.py</affectedPath><affectedPath>utilities/sens_matrix/config_example.py</affectedPath><affectedPath>utilities/sens_matrix/quadtune_driver.py</affectedPath><affectedPath>utilities/sens_matrix/create_nonbootstrap_figs.py</affectedPath><affectedPath>utilities/sens_matrix/test_analyzeSensMatrix.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>53b8ea738d8dbf0f4d617272d3e4db9ac6cba98c</commitId><timestamp>1742680027000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Rename "linSoln" to "globTuned" in order to denote the global simulation result after tuning.  Add docstrings to more functions.

For #910.
</comment><date>2025-03-22 16:47:07 -0500</date><id>53b8ea738d8dbf0f4d617272d3e4db9ac6cba98c</id><msg>QuadTune: Rename "linSoln" to "globTuned" in order to denote the global simulation result after tuning.  Add docstrings to more functions.</msg><path><editType>edit</editType><file>utilities/sens_matrix/config.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/config_example.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_nonbootstrap_figs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/test_analyzeSensMatrix.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/CLUBB_core/interpolation.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/generalized_grid_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>run_scripts/run_bindiff_w_flags_config_core_flags.json</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>969bc4aa2a1db2664c0f92b98d2df5544c554c32</commitId><timestamp>1742704780000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Clubb test correct gg (#1237)

* Updated the generalized vertical grid test to use the
run_bindiff_w_flags_config_core_flags.json file, which performs
18 overall flag configuration file tests and includes almost
every configurable model flag found in CLUBB core.

* Fixed a bug. This was caught by running the new hybrid PDF after
compiling with the gfortran debug compiler script.

* The CLUBB code requires l_min_xp2_from_corr_wx and
l_enable_relaxed_clipping to always have opposite values.

* Finally fixing the bug where Cx_fnc_Richardson needs to be interpolated
to thermodynamic levels in order to be used as C11_Skw_fnc.

* I fixed an issue with the generalized grid when the expldiff of rtm
and thlm is enabled.

* The variable gr now needs to be passed into subroutine pvertinterp
(which was formerly found in interpolation.F90) in order to generalize
the grid. This created a circular dependency, for grid_class references
interpolation, and now interpolation needed to reference grid_class
in order to use type grid. This road block prevented the model from
compiling. I moved subroutine pvertinterp to advance_clubb_core in
order to solve the problem.

* Moving the flag required editing the delimiters.

* I fixed a bug in the generalized grid test code that was resulting
in pdf_implicit_coefs_terms scalar variables not being read in
correctly for the flipped (descending) grid.

* Improved some error handling in clubb_driver.F90

* Fixed an issue where ascending and descending grids were producing
results that were not bit-for-bit to each other where centered
discretization was used. The issue occurred because 3 or more terms
were being added together in opposite orders between ascending and
descending grids. This fix ensures terms are added in the same order.

* Commiting changes to keep calculation order the same for additions
involving at least 3 terms from different vertical levels between
ascending and descending grids.`

* I removed bugs that were causing failures of the bit-for-bit
matching test (at -O0 optimization) between ascending and descending
grids. This group of fixes related to the code that calls pdf_closure
twice and calls the trapezoidal rule code.

* I have fixed the ascending vs. descending grid error for the situation
where l_partial_upwind_wp3 is enabled.

* I am removing the flag setting of l_mono_flux_lim_thlm to .false.
in flag group 15 of the ascending vs. descending grid tests.

Problem: Removing the constraints on thlm was causing one case (MC3E)
to blow up with a floating point exception in Morrison microphysics.
The issue was that a spike caused an extremely cold temperature to be
found. There is a line of code that takes the difference between
freezing/melting point temperature (273.15 K) and the temperature
at the grid level or sample point, multiplies it by constant, and then
takes EXP to that product. The large difference between temperature
and freezing/melting point, owing to the spike, caused a numerical
overflow to occur and the case to fail with a FPE.

Solution: There isn't any relevant code found in the monotonic flux
limiter that doesn't get tested if l_mono_flux_lim_thlm remains at
a setting of .true. The other parts of conditionals are covered
by setting l_mono_flux_lim_rtm to .false. The only parts of the
code unique to l_mono_flux_lim_thlm are the recording of stats
related directly to thlm. Thus, it makes sense to keep
l_mono_flux_lim_thlm set to .true. for the stability of the run
while turning off the other monotonic flux limiter flags.

* Updated the code to use break or return when clubb fatal error is
encountered, which is more consistent with the way CLUBB does business
now, then simply Fortran stop in place. This also allows the generalized
grid test to finally pass for all cases and all flag sets.
</comment><date>2025-03-22 23:39:40 -0500</date><id>969bc4aa2a1db2664c0f92b98d2df5544c554c32</id><msg>Clubb test correct gg (#1237)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/interpolation.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_core_flags.json</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>529</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/529/</url></nextBuild><previousBuild><number>527</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/527/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>527</buildNumber><marked><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><branch><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><branch><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><branch><SHA1>b1e6e895ca45b2170bc75489232af169397b99d8</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#527</displayName><duration>541058</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #527</fullDisplayName><id>527</id><keepLog>false</keepLog><number>527</number><queueId>8173</queueId><result>SUCCESS</result><timestamp>1742632148724</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/527/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/quadtune_driver.py</affectedPath><affectedPath>utilities/sens_matrix/create_nonbootstrap_figs.py</affectedPath><commitId>b1e6e895ca45b2170bc75489232af169397b99d8</commitId><timestamp>1742575852000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Move import statements to top of file.  Move abbreviateParamsNames to set_up_inputs.  Neaten source code a bit.

For #910.
</comment><date>2025-03-21 11:50:52 -0500</date><id>b1e6e895ca45b2170bc75489232af169397b99d8</id><msg>QuadTune: Move import statements to top of file.  Move abbreviateParamsNames to set_up_inputs.  Neaten source code a bit.</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_nonbootstrap_figs.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>528</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/528/</url></nextBuild><previousBuild><number>526</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/526/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>526</buildNumber><marked><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><branch><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><branch><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><branch><SHA1>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#526</displayName><duration>533418</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #526</fullDisplayName><id>526</id><keepLog>false</keepLog><number>526</number><queueId>8117</queueId><result>SUCCESS</result><timestamp>1742545749623</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/526/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/quadtune_driver.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/create_nonbootstrap_figs.py</affectedPath><commitId>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</commitId><timestamp>1742492785000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Set plot-type flags in set_up_inputs.py and then feed them into create_nonbootstrap_figs.py.

For #910.
</comment><date>2025-03-20 12:46:25 -0500</date><id>eb8cc04963e2d22f2568e0bd517cb3c381edbfa1</id><msg>QuadTune: Set plot-type flags in set_up_inputs.py and then feed them into create_nonbootstrap_figs.py.</msg><path><editType>edit</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_nonbootstrap_figs.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>527</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/527/</url></nextBuild><previousBuild><number>525</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/525/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>525</buildNumber><marked><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><branch><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><branch><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><branch><SHA1>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#525</displayName><duration>538402</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #525</fullDisplayName><id>525</id><keepLog>false</keepLog><number>525</number><queueId>8063</queueId><result>SUCCESS</result><timestamp>1742459348403</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/525/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/create_figs.py</affectedPath><commitId>bad478764e6262238f36f902bb45c437b49ee3de</commitId><timestamp>1742390280000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Improve plot titles, add (a), (b), (c) to subpanels, etc.

For #910.
</comment><date>2025-03-19 08:18:00 -0500</date><id>bad478764e6262238f36f902bb45c437b49ee3de</id><msg>QuadTune: Improve plot titles, add (a), (b), (c) to subpanels, etc.</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_figs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/create_figs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>10b86f1f478d76bb38a0aaebc7e5fefde504908c</commitId><timestamp>1742397471000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Remove dependence of QuadTune code on file analyze_sensitivity_matrix.py.
This required copying some functions from analyze_sensitivity_matrix.py to other files.

For #910.
</comment><date>2025-03-19 10:17:51 -0500</date><id>10b86f1f478d76bb38a0aaebc7e5fefde504908c</id><msg>QuadTune: Remove dependence of QuadTune code on file analyze_sensitivity_matrix.py.</msg><path><editType>edit</editType><file>utilities/sens_matrix/create_figs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/bootstrap_calculations.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/create_bootstrap_figs.py</affectedPath><affectedPath>utilities/sens_matrix/bootstrap_plots.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/quadtune_driver.py</affectedPath><affectedPath>utilities/sens_matrix/create_nonbootstrap_figs.py</affectedPath><affectedPath>utilities/sens_matrix/do_bootstrap_calcs.py</affectedPath><affectedPath>utilities/sens_matrix/create_figs.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</commitId><timestamp>1742400434000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Rename files.

For #910.
</comment><date>2025-03-19 11:07:14 -0500</date><id>dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6</id><msg>QuadTune: Rename files.</msg><path><editType>add</editType><file>utilities/sens_matrix/create_bootstrap_figs.py</file></path><path><editType>add</editType><file>utilities/sens_matrix/do_bootstrap_calcs.py</file></path><path><editType>delete</editType><file>utilities/sens_matrix/create_figs.py</file></path><path><editType>delete</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>add</editType><file>utilities/sens_matrix/set_up_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>add</editType><file>utilities/sens_matrix/quadtune_driver.py</file></path><path><editType>delete</editType><file>utilities/sens_matrix/bootstrap_plots.py</file></path><path><editType>delete</editType><file>utilities/sens_matrix/bootstrap_calculations.py</file></path><path><editType>add</editType><file>utilities/sens_matrix/create_nonbootstrap_figs.py</file></path><path><editType>delete</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>526</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/526/</url></nextBuild><previousBuild><number>524</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/524/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>524</buildNumber><marked><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><branch><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><branch><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><branch><SHA1>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#524</displayName><duration>653223</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #524</fullDisplayName><id>524</id><keepLog>false</keepLog><number>524</number><queueId>8003</queueId><result>SUCCESS</result><timestamp>1742113749886</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/524/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/create_figs.py</affectedPath><affectedPath>utilities/sens_matrix/bootstrap_plots.py</affectedPath><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><commitId>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</commitId><timestamp>1742056441000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>QuadTune: Shut off bootstrap fig display, set useBootstrap=F, and improved fonts on scatterplots.

For #910.
</comment><date>2025-03-15 11:34:01 -0500</date><id>0dc4761ff2d0f0c95b3f103b0112d63a2048cc97</id><msg>QuadTune: Shut off bootstrap fig display, set useBootstrap=F, and improved fonts on scatterplots.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/bootstrap_plots.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/create_figs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><inProgress>false</inProgress><nextBuild><number>525</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/525/</url></nextBuild><previousBuild><number>523</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/523/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>523</buildNumber><marked><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><branch><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><branch><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><branch><SHA1>e4aa2c379ef53a757d44d3674c70e75b2536aa46</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#523</displayName><duration>597521</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #523</fullDisplayName><id>523</id><keepLog>false</keepLog><number>523</number><queueId>7949</queueId><result>SUCCESS</result><timestamp>1742027345768</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/523/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><commitId>78cba21967b128a4aa8c7107164c9d80aaee7e43</commitId><timestamp>1741958038000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Updating the Jenkinsfile for the CLUBB generalized vertical grid test
so we can truly turn off all stats.
</comment><date>2025-03-14 08:13:58 -0500</date><id>78cba21967b128a4aa8c7107164c9d80aaee7e43</id><msg>Updating the Jenkinsfile for the CLUBB generalized vertical grid test</msg><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><commitId>e4aa2c379ef53a757d44d3674c70e75b2536aa46</commitId><timestamp>1741958369000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Revert "When the run_clubb_w_varying_flags.py script is running a generalized"

This reverts commit 02f49f2feca508a3bdc6f881673d23f576add971.

This commit was problematic and is no longer necessary in light of
commit 78cba21.
</comment><date>2025-03-14 08:19:29 -0500</date><id>e4aa2c379ef53a757d44d3674c70e75b2536aa46</id><msg>Revert "When the run_clubb_w_varying_flags.py script is running a generalized"</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>524</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/524/</url></nextBuild><previousBuild><number>522</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/522/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>522</buildNumber><marked><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><branch><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><branch><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><branch><SHA1>02f49f2feca508a3bdc6f881673d23f576add971</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#522</displayName><duration>666064</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #522</fullDisplayName><id>522</id><keepLog>false</keepLog><number>522</number><queueId>7893</queueId><result>SUCCESS</result><timestamp>1741940946659</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/522/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><commitId>108815d5afea2ebd26c3611c760288b9e56e454c</commitId><timestamp>1741880307000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>One of the previous issues with this python script is that it
suppressed the output of the bash script it was running
(run_scm_all.bash). It is important to see what cases successfully
ran and what cases failed. I have altered the script so that
it doesn't suppress the output of run_scm_all.bash.

Note: the output from the bash script won't be printed to output
until all the cases in run_scm_all.bash have been run to completion.
</comment><date>2025-03-13 10:38:27 -0500</date><id>108815d5afea2ebd26c3611c760288b9e56e454c</id><msg>One of the previous issues with this python script is that it</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><commitId>25168201548b7ac24d9a4b58a1b55f742479755e</commitId><timestamp>1741911256000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am setting the exit_code for the python script to be based on
what is passed out from the bash script for the set of
run_scm_all.bash commands for each flag grouping. It any flag test
fails, the overall exit code from the test will also be set to
a fail result.
</comment><date>2025-03-13 19:14:16 -0500</date><id>25168201548b7ac24d9a4b58a1b55f742479755e</id><msg>I am setting the exit_code for the python script to be based on</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><commitId>fd6d3ca5c2e22280c5faffe4e79307f3956f17c9</commitId><timestamp>1741916556000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I added some helpful print statements and imported "sys" for the
sys.exit statement.
</comment><date>2025-03-13 20:42:36 -0500</date><id>fd6d3ca5c2e22280c5faffe4e79307f3956f17c9</id><msg>I added some helpful print statements and imported "sys" for the</msg><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><commitId>1ae402390b203de58866e57af503d9641df0c421</commitId><timestamp>1741917707000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Changing the generalized vertical grid Jenkins test to use the new
run_clubb_w_varying_flags.py python script instead of the traditional
run_scm_all.bash.
</comment><date>2025-03-13 21:01:47 -0500</date><id>1ae402390b203de58866e57af503d9641df0c421</id><msg>Changing the generalized vertical grid Jenkins test to use the new</msg><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><commitId>02f49f2feca508a3bdc6f881673d23f576add971</commitId><timestamp>1741932830000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>When the run_clubb_w_varying_flags.py script is running a generalized
vertical grid test, use a stats file that has a greatly reduced number
of stats. Stats aren't important for this test. We don't want to eat
up too much storage space or waste extra time with stats.
</comment><date>2025-03-14 01:13:50 -0500</date><id>02f49f2feca508a3bdc6f881673d23f576add971</id><msg>When the run_clubb_w_varying_flags.py script is running a generalized</msg><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>523</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/523/</url></nextBuild><previousBuild><number>521</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/521/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>521</buildNumber><marked><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><branch><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><branch><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><branch><SHA1>9cbf31890998651dc6a36c32990fc9e8771b4d7c</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#521</displayName><duration>661826</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #521</fullDisplayName><id>521</id><keepLog>false</keepLog><number>521</number><queueId>7816</queueId><result>SUCCESS</result><timestamp>1741854547612</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/521/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><commitId>9cbf31890998651dc6a36c32990fc9e8771b4d7c</commitId><timestamp>1741831876000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I added a stripped down version of the run_bindiff_w_flags.py script
that simply reads in the JSON file and runs CLUBB with all the different
flag setting groups listed. It stores the flag files and the model
output in the working directory. It does not do anything fancy like
checkout the git repository and compile or compare results.
</comment><date>2025-03-12 21:11:16 -0500</date><id>9cbf31890998651dc6a36c32990fc9e8771b4d7c</id><msg>I added a stripped down version of the run_bindiff_w_flags.py script</msg><path><editType>add</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>522</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/522/</url></nextBuild><previousBuild><number>520</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/520/</url></previousBuild></build><build _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>520</buildNumber><marked><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><branch><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><branch><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><branch><SHA1>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#520</displayName><duration>1193665</duration><estimatedDuration>1326585</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #520</fullDisplayName><id>520</id><keepLog>false</keepLog><number>520</number><queueId>7742</queueId><result>SUCCESS</result><timestamp>1741768148573</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_BFB_gfortran_test/520/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_standalone.F90</affectedPath><affectedPath>src/generalized_grid_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/error_code.F90</affectedPath><commitId>b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2</commitId><timestamp>1741731122000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>The generalized grid test should not output a clubb fatal error when it
fails. Rather, they should output a unique error code specific to their
failure. Otherwise, failures due to numerical instability, etc., will
be confused as generalized grid failures in the Jenkins tests.
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This reverts commit d2b125b12117d18474f2093b40e3e575a93422e7.
</comment><date>2025-03-07 11:06:51 -0600</date><id>c226fa8c4bf5d9977ad208e18f57779e5711ff5d</id><msg>Revert "I have no idea if it's appropriate to include gr in this statment,"</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</affectedPath><affectedPath>input_misc/G_unit_tests.in</affectedPath><commitId>bd0d4f70434d41cb4d5237f05587b5edf875d520</commitId><timestamp>1741378827000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Added a special G unit Jenkins test for the Reverse Direction
Grid Unit Test. This test is different than the other G unit tests
because it requires a special compilation at -O0 optimization.
</comment><date>2025-03-07 14:20:27 -0600</date><id>bd0d4f70434d41cb4d5237f05587b5edf875d520</id><msg>Added a special G unit Jenkins test for the Reverse Direction</msg><path><editType>edit</editType><file>input_misc/G_unit_tests.in</file></path><path><editType>add</editType><file>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/G_unit_tests.in</affectedPath><commitId>9a6ea30fe782b73edf356a7c126a7a3d71e53452</commitId><timestamp>1741378967000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I accidentally committed G_unit_tests.in as part of my previous commit.
I didn't want to do that. This commits reverts the previous commit
for only that file.
</comment><date>2025-03-07 14:22:47 -0600</date><id>9a6ea30fe782b73edf356a7c126a7a3d71e53452</id><msg>I accidentally committed G_unit_tests.in as part of my previous commit.</msg><path><editType>edit</editType><file>input_misc/G_unit_tests.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</affectedPath><commitId>62529da84f1d4a64ad33c0da7549a43025d045c9</commitId><timestamp>1741380674000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I forgot to update the test name in the Jenkinsfile.
</comment><date>2025-03-07 14:51:14 -0600</date><id>62529da84f1d4a64ad33c0da7549a43025d045c9</id><msg>I forgot to update the test name in the Jenkinsfile.</msg><path><editType>edit</editType><file>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><commitId>4ad28abbf7c6d9da74b5dc738f63a79ede657e1c</commitId><timestamp>1741387523000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I discovered that I inadvertently change an $acc statement that
is found in the monotonic flux limiter (why is it ALWAYS the
monotonic flux limiter?) back in be90159. In this commit, I am
setting the $acc statement back to what it is supposed to be.
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</comment><date>2026-06-04 10:38:02 -0500</date><id>0d30e05f0411c43c5b0eecb8734433dd9a29deda</id><msg>Create README for python_sam_budgets_plotter folder</msg><path><editType>add</editType><file>postprocessing/python_sam_budgets_plotter/README</file></path></item><item 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plotgen (#1312)

* Removed entire plotgen directory 
</comment><date>2026-06-04 13:47:50 -0500</date><id>53893cabfda88eccc92204a3471b3855a4716aa6</id><msg>Removed plotgen (#1312)</msg><path><editType>delete</editType><file>postprocessing/plotgen/Term/ANSIColor.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_nd_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/mpace_b.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_late.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_do_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cobra.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/bomex_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_morr_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/gate_shear_rlsf_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s11_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_silhs_inter.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf02_ds.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>edit</editType><file>ens_tune/analyze_results.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_sam_standalone.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_hi_iop.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/armcc.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/bomex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/File/Copy/Recursive.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/read_grads_hoc_endian.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/mc3e_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/TimeseriesFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/wangara_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/arm97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_all.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_clubb.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf01_fixed_sst.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/plotgen.pl</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/CaseFunctions/UseFirstArgIfExist.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_atl_hi_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/astex_a209.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/ProfileFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/atex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twp_ice_scidac.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_all_sam.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_silhs_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s6_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_morr_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twpice_scidac_check_cam_sam_forcings.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/corr_covars_template.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/jun25_altocu_qc3_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls2_nightly.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/cam_sam_forcings/cam_sam_forcings_twpice.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_oct14.case</file></path><path><editType>edit</editType><file>ens_tune/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/VariableReadNC.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/wrf/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/OutputWriter.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico.case</file></path><path><editType>delete</editType><file>postpro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_class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/python_sam_budgets_plotter/README</affectedPath><commitId>0d30e05f0411c43c5b0eecb8734433dd9a29deda</commitId><timestamp>1780587482000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Create README for python_sam_budgets_plotter folder
</comment><date>2026-06-04 10:38:02 -0500</date><id>0d30e05f0411c43c5b0eecb8734433dd9a29deda</id><msg>Create README for python_sam_budgets_plotter folder</msg><path><editType>add</editType><file>postprocessing/python_sam_budgets_plotter/README</file></path></item><item 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plotgen (#1312)

* Removed entire plotgen directory 
</comment><date>2026-06-04 13:47:50 -0500</date><id>53893cabfda88eccc92204a3471b3855a4716aa6</id><msg>Removed plotgen (#1312)</msg><path><editType>delete</editType><file>postprocessing/plotgen/Term/ANSIColor.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_nd_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/mpace_b.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_late.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_do_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cobra.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/bomex_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_morr_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/gate_shear_rlsf_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s11_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_silhs_inter.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf02_ds.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>edit</editType><file>ens_tune/analyze_results.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_sam_standalone.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_hi_iop.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/armcc.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/bomex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/File/Copy/Recursive.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/read_grads_hoc_endian.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/mc3e_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/TimeseriesFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/wangara_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/arm97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_all.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_clubb.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf01_fixed_sst.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/plotgen.pl</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/CaseFunctions/UseFirstArgIfExist.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_atl_hi_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/astex_a209.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/ProfileFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/atex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twp_ice_scidac.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_all_sam.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_silhs_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s6_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_morr_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twpice_scidac_check_cam_sam_forcings.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/corr_covars_template.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/jun25_altocu_qc3_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls2_nightly.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/cam_sam_forcings/cam_sam_forcings_twpice.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_oct14.case</file></path><path><editType>edit</editType><file>ens_tune/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/VariableReadNC.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/wrf/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/OutputWriter.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico.case</file></path><path><editType>delete</editType><file>postpro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plotgen (#1312)

* Removed entire plotgen directory 
</comment><date>2026-06-04 13:47:50 -0500</date><id>53893cabfda88eccc92204a3471b3855a4716aa6</id><msg>Removed plotgen 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/python_sam_budgets_plotter/README</affectedPath><commitId>0d30e05f0411c43c5b0eecb8734433dd9a29deda</commitId><timestamp>1780587482000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Create README for python_sam_budgets_plotter folder
</comment><date>2026-06-04 10:38:02 -0500</date><id>0d30e05f0411c43c5b0eecb8734433dd9a29deda</id><msg>Create README for python_sam_budgets_plotter folder</msg><path><editType>add</editType><file>postprocessing/python_sam_budgets_plotter/README</file></path></item><item 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plotgen (#1312)

* Removed entire plotgen directory 
</comment><date>2026-06-04 13:47:50 -0500</date><id>53893cabfda88eccc92204a3471b3855a4716aa6</id><msg>Removed plotgen (#1312)</msg><path><editType>delete</editType><file>postprocessing/plotgen/Term/ANSIColor.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_nd_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/mpace_b.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_late.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_morr_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_do_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cobra.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/bomex_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_morr_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/gate_shear_rlsf_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s11_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_silhs_inter.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf02_ds.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf01_fixed_sst_budgets.case</file></path><path><editType>edit</editType><file>ens_tune/analyze_results.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/arm_97_sam_standalone.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_hi_iop.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/armcc.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/bomex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/File/Copy/Recursive.pm</file></path><path><editType>delete</editType><file>postprocessing/plotgen/read_grads_hoc_endian.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/arm.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/mc3e_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/lba_subperiods/lba_budgets_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/TimeseriesFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/wangara_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s12_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/arm97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_all.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_pac_lo_iop_clubb.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_nov02_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cloud_feedback_s11_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/lba_early.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_nd_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/gfdl/dycoms2_rf01_fixed_sst.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/plotgen.pl</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls3.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/arm_97.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/CaseFunctions/UseFirstArgIfExist.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/se_atl_hi_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/astex_a209.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/cgils_s06_p2k.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/ProfileFunctions.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/atex.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twp_ice_scidac.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/templates/template_all_sam.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/ne_pac_lo_iop_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/nov11_altocu_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/mpace_b_silhs_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/cloud_feedback_s6_p2k_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/templates/template_morr_budget.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/twpice_scidac_check_cam_sam_forcings.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/corr_covars_template.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf02_so.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/jun25_altocu_qc3_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/gabls2_nightly.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/cam/cam_sam_forcings/cam_sam_forcings_twpice.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/sam_clubb/lba_subperiods/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/clex9_oct14.case</file></path><path><editType>edit</editType><file>ens_tune/README</file></path><path><editType>delete</editType><file>postprocessing/plotgen/VariableReadNC.m</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/wrf/fire.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/OutputWriter.py</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/dycoms2_rf01_coamps_budgets.case</file></path><path><editType>delete</editType><file>postprocessing/plotgen/cases/clubb/rico.case</file></path><path><editType>delete</editType><file>postpro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