Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 87a53ffc8879c37549b77c26005ba6351fdd03e3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 87a53ffc8879c37549b77c26005ba6351fdd03e3 # timeout=10 Commit message: "A variety of small loop pushing. larson-group/clubb#972" > git rev-list --no-walk 432998647cc3004408c9030c0300b00e34a74545 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘one’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘one_hundred’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘rt_tol’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘thl_tol’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘w_tol’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/sigma_sqd_w_module.F90:146:8: 146 | use constants_clubb, only: & | 1 Warning: Unused parameter ‘w_tol_sqd’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/clubb_api_module.F90:1012:16: 1012 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1331:13: 1331 | .or. is_nan_2d( real( rim_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1332:13: 1332 | .or. is_nan_2d( real( rsm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1333:13: 1333 | .or. is_nan_2d( real( rrm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1334:13: 1334 | .or. is_nan_2d( real( rgm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1335:13: 1335 | .or. is_nan_2d( real( Ncm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1336:13: 1336 | .or. is_nan_2d( real( Nim_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1337:13: 1337 | .or. is_nan_2d( real( Nsm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1338:13: 1338 | .or. is_nan_2d( real( Nrm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1339:13: 1339 | .or. is_nan_2d( real( Ngm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1340:13: 1340 | .or. is_nan_2d( real( rvm_mc_r4, kind=core_rknd ) ) & | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/morrison_microphys_module.F90:1341:13: 1341 | .or. is_nan_2d( real( T_in_K_mc, kind=core_rknd ) ) ) then | 1 Warning: Impure function ‘is_nan_2d’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] ../src/G_unit_test_types/pdf_parameter_tests.F90:1593:12: 1593 | = compute_sigma_sqd_w( gamma_Skw_fnc, wp2, thlp2, rtp2, & | 1 Error: Generic function ‘compute_sigma_sqd_w’ at (1) is not consistent with a specific intrinsic interface make[1]: *** [Make.G_unit_tests:24: pdf_parameter_tests.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [Makefile:59: G_unit_tests] Error 2 make: *** Waiting for unfinished jobs.... Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/87a53ffc8879c37549b77c26005ba6351fdd03e3. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_432998647cc3004408c9030c0300b00e34a74545. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm_97 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing atex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf02_ds netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing gabls3_night netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing lba netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing rico netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing twp_ice netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (432998647cc3004408c9030c0300b00e34a74545) 86d05e7dca94d508b29883762875fe0a08dea30e 947de4988ae05d123a9ce5920e016d31f589754c 87a53ffc8879c37549b77c26005ba6351fdd03e3 Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 86d05e7dca94d508b29883762875fe0a08dea30e Parsing message from commit: 947de4988ae05d123a9ce5920e016d31f589754c Parsing message from commit: 87a53ffc8879c37549b77c26005ba6351fdd03e3 Checking Commit: 86d05e7dca94d508b29883762875fe0a08dea30e Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 947de4988ae05d123a9ce5920e016d31f589754c Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 87a53ffc8879c37549b77c26005ba6351fdd03e3 Running: final commit to check, not labelled BIT_CHANGING Checking out 87a53ffc8879c37549b77c26005ba6351fdd03e3 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 432998647cc3004408c9030c0300b00e34a74545 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 87a53ffc8879c37549b77c26005ba6351fdd03e3 latest_revision_validated_432998647cc3004408c9030c0300b00e34a74545' =============================== Test Results =============================== Commit Range Checked = 432998647cc3004408c9030c0300b00e34a74545...87a53ffc8879c37549b77c26005ba6351fdd03e3 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 87a53ffc8879c37549b77c26005ba6351fdd03e3 =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: 432998647cc3004408c9030c0300b00e34a74545 RENAMING 87a53ffc8879c37549b77c26005ba6351fdd03e3 to latest_revision_validated_87a53ffc8879c37549b77c26005ba6351fdd03e3 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS