Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision fa5559b6fd09f3da30b4d4d0255c532b3dd53607 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f fa5559b6fd09f3da30b4d4d0255c532b3dd53607 # timeout=10 Commit message: "I am committing some idiot proofing in regards to the advance subroutines ordering. No index can have a value of less than 1, greater than 4, and no index can have the same value as any other index. Each adv routine order index must have a unique value." > git rev-list --no-walk 13e93594651b217c11b00cfede5784136a16b86d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2518:32: 2518 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:3288:10: 3288 | use advance_xm_wpxp_module, only: & | 1 Warning: Unused parameter ‘l_enable_relaxed_clipping’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:3230:39: 3230 | l_min_xp2_from_corr_wx, & ! intent(in) | 1 Warning: Unused dummy argument ‘l_min_xp2_from_corr_wx’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: 132 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:323:13: 323 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/71ab332a524b2802f9e406d8e9ac00712a3b96c0. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_13e93594651b217c11b00cfede5784136a16b86d. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: 132 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/06d48b1c9da2a8a65f080fa16450d807b97a19ea. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/71ab332a524b2802f9e406d8e9ac00712a3b96c0. Diffing arm netCDF (*.nc) files *** Differences detected in arm_zt.nc! *** *** Differences detected in arm_zm.nc! *** *** Differences detected in arm_sfc.nc! *** Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files *** Differences detected in atex_zt.nc! *** *** Differences detected in atex_zm.nc! *** *** Differences detected in atex_sfc.nc! *** Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** *** Differences detected in bomex_zm.nc! *** *** Differences detected in bomex_sfc.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** *** Differences detected in dycoms2_rf01_zm.nc! *** *** Differences detected in dycoms2_rf01_sfc.nc! *** Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files *** Differences detected in gabls3_night_zt.nc! *** *** Differences detected in gabls3_night_zm.nc! *** *** Differences detected in gabls3_night_sfc.nc! *** Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files *** Differences detected in wangara_zt.nc! *** *** Differences detected in wangara_zm.nc! *** *** Differences detected in wangara_sfc.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/fa5559b6fd09f3da30b4d4d0255c532b3dd53607. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/06d48b1c9da2a8a65f080fa16450d807b97a19ea. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (13e93594651b217c11b00cfede5784136a16b86d) a7c61266346ca0d113aaf2e12fc9580c8a6186d0 35d03fc4ee564148d7c718591ba0e48b86c97072 05a0c45a46b4d2bb8afbb235969868a878d755d3 ab8d447789861d018a0e50d06bedea3e044d5ecb 9b22e11df82804105e6f34728d42e29ebd8dc9da 71ab332a524b2802f9e406d8e9ac00712a3b96c0 06d48b1c9da2a8a65f080fa16450d807b97a19ea fa5559b6fd09f3da30b4d4d0255c532b3dd53607 Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: a7c61266346ca0d113aaf2e12fc9580c8a6186d0 Parsing message from commit: 35d03fc4ee564148d7c718591ba0e48b86c97072 Parsing message from commit: 05a0c45a46b4d2bb8afbb235969868a878d755d3 Parsing message from commit: ab8d447789861d018a0e50d06bedea3e044d5ecb Parsing message from commit: 9b22e11df82804105e6f34728d42e29ebd8dc9da Parsing message from commit: 71ab332a524b2802f9e406d8e9ac00712a3b96c0 Parsing message from commit: 06d48b1c9da2a8a65f080fa16450d807b97a19ea Found: BIT_CHANGING Parsing message from commit: fa5559b6fd09f3da30b4d4d0255c532b3dd53607 Checking Commit: a7c61266346ca0d113aaf2e12fc9580c8a6186d0 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 35d03fc4ee564148d7c718591ba0e48b86c97072 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 05a0c45a46b4d2bb8afbb235969868a878d755d3 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: ab8d447789861d018a0e50d06bedea3e044d5ecb Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 9b22e11df82804105e6f34728d42e29ebd8dc9da Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 71ab332a524b2802f9e406d8e9ac00712a3b96c0 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 06d48b1c9da2a8a65f080fa16450d807b97a19ea Checking out 71ab332a524b2802f9e406d8e9ac00712a3b96c0 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 13e93594651b217c11b00cfede5784136a16b86d already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 71ab332a524b2802f9e406d8e9ac00712a3b96c0 latest_revision_validated_13e93594651b217c11b00cfede5784136a16b86d' Checking out 06d48b1c9da2a8a65f080fa16450d807b97a19ea Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 71ab332a524b2802f9e406d8e9ac00712a3b96c0 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 06d48b1c9da2a8a65f080fa16450d807b97a19ea 71ab332a524b2802f9e406d8e9ac00712a3b96c0' Commit '06d48b1c9da2a8a65f080fa16450d807b97a19ea' is BIT_CHANGING and properly labelled as such. Checking Commit: fa5559b6fd09f3da30b4d4d0255c532b3dd53607 Running: final commit to check, not labelled BIT_CHANGING Checking out fa5559b6fd09f3da30b4d4d0255c532b3dd53607 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 06d48b1c9da2a8a65f080fa16450d807b97a19ea already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash fa5559b6fd09f3da30b4d4d0255c532b3dd53607 06d48b1c9da2a8a65f080fa16450d807b97a19ea' =============================== Test Results =============================== Commit Range Checked = 13e93594651b217c11b00cfede5784136a16b86d...fa5559b6fd09f3da30b4d4d0255c532b3dd53607 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: fa5559b6fd09f3da30b4d4d0255c532b3dd53607 =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: 13e93594651b217c11b00cfede5784136a16b86d REMOVING: 71ab332a524b2802f9e406d8e9ac00712a3b96c0 REMOVING: 06d48b1c9da2a8a65f080fa16450d807b97a19ea RENAMING fa5559b6fd09f3da30b4d4d0255c532b3dd53607 to latest_revision_validated_fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS