+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config
Directory 1 is 02babc6b5a46bda3075bf071426fa20bf200a43b
Directory 2 is 0ccbf4f61f326437ea971ff5eca1eb570e8e4711
Using reporting threshold: 0.0
The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
================================================ arm_97 ================================================
>The linux diff detected differences in arm_97_stats.nc<
>>Differences above threshold were detected in the common fields in file arm_97_stats.nc<<
>>>Differences in common variables detected for case arm_97<<<
=====================================================================================================
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
>>Differences above threshold were detected in the common fields in file arm_stats.nc<<
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ atex ================================================
>The linux diff detected differences in atex_stats.nc<
>>Differences above threshold were detected in the common fields in file atex_stats.nc<<
>>>Differences in common variables detected for case atex<<<
=====================================================================================================
================================================ bomex ================================================
>The linux diff detected differences in bomex_stats.nc<
>>Differences above threshold were detected in the common fields in file bomex_stats.nc<<
>>>Differences in common variables detected for case bomex<<<
=====================================================================================================
================================================ dycoms2_rf01 ================================================
>The linux diff detected differences in dycoms2_rf01_stats.nc<
>>Differences above threshold were detected in the common fields in file dycoms2_rf01_stats.nc<<
>>>Differences in common variables detected for case dycoms2_rf01<<<
=====================================================================================================
================================================ dycoms2_rf02_ds ================================================
>The linux diff detected differences in dycoms2_rf02_ds_stats.nc<
>>Differences above threshold were detected in the common fields in file dycoms2_rf02_ds_stats.nc<<
>>>Differences in common variables detected for case dycoms2_rf02_ds<<<
=====================================================================================================
================================================ gabls3_night ================================================
>The linux diff detected differences in gabls3_night_stats.nc<
>>Differences above threshold were detected in the common fields in file gabls3_night_stats.nc<<
>>>Differences in common variables detected for case gabls3_night<<<
=====================================================================================================
================================================ lba ================================================
>The linux diff detected differences in lba_stats.nc<
>>Differences above threshold were detected in the common fields in file lba_stats.nc<<
>>>Differences in common variables detected for case lba<<<
=====================================================================================================
================================================ rico ================================================
>The linux diff detected differences in rico_stats.nc<
>>Differences above threshold were detected in the common fields in file rico_stats.nc<<
>>>Differences in common variables detected for case rico<<<
=====================================================================================================
================================================ twp_ice ================================================
>The linux diff detected differences in twp_ice_stats.nc<
>>Differences above threshold were detected in the common fields in file twp_ice_stats.nc<<
>>>Differences in common variables detected for case twp_ice<<<
=====================================================================================================
================================================ wangara ================================================
>The linux diff detected differences in wangara_stats.nc<
>>Differences above threshold were detected in the common fields in file wangara_stats.nc<<
>>>Differences in common variables detected for case wangara<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 0 cases []
Fail: 11 cases ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
Directory 1 is 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Directory 2 is 02babc6b5a46bda3075bf071426fa20bf200a43b
Using reporting threshold: 0.0
The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
================================================ arm_97 ================================================
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
=====================================================================================================
================================================ arm ================================================
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
=====================================================================================================
================================================ atex ================================================
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
=====================================================================================================
================================================ bomex ================================================
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
=====================================================================================================
================================================ dycoms2_rf01 ================================================
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
=====================================================================================================
================================================ dycoms2_rf02_ds ================================================
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
=====================================================================================================
================================================ gabls3_night ================================================
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
=====================================================================================================
================================================ lba ================================================
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
=====================================================================================================
================================================ rico ================================================
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
=====================================================================================================
================================================ twp_ice ================================================
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
=====================================================================================================
================================================ wangara ================================================
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
=====================================================================================================
SUMMARY:
Linux diff did not detect any differences in the compared files.
Pass: 11 cases ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
Fail: 0 cases []
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 02babc6b5a46bda3075bf071426fa20bf200a43b
Found: BIT_CHANGING
Parsing message from commit: afbbe1126523c6ff7a4bb8091f72a242280490ba
Parsing message from commit: 8ab3902e812c2883976b4f1f57c085d682666d92
Parsing message from commit: c743a1427c73d47a5515a8d34c6de40cc266a3fd
Parsing message from commit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Checking Commit: 02babc6b5a46bda3075bf071426fa20bf200a43b
Checking out 02babc6b5a46bda3075bf071426fa20bf200a43b
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Checking out 0ccbf4f61f326437ea971ff5eca1eb570e8e4711
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Diffing: 'run_scripts/run_bindiff_all.py 02babc6b5a46bda3075bf071426fa20bf200a43b 0ccbf4f61f326437ea971ff5eca1eb570e8e4711'
Commit '02babc6b5a46bda3075bf071426fa20bf200a43b' is BIT_CHANGING and properly labelled as such.
Checking Commit: afbbe1126523c6ff7a4bb8091f72a242280490ba
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 8ab3902e812c2883976b4f1f57c085d682666d92
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: c743a1427c73d47a5515a8d34c6de40cc266a3fd
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Running: final commit to check, not labelled BIT_CHANGING
Checking out 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Output from 02babc6b5a46bda3075bf071426fa20bf200a43b already saved
Diffing: 'run_scripts/run_bindiff_all.py 7e9b710922cae26f2bcaf92b858ba00bc6b5f040 02babc6b5a46bda3075bf071426fa20bf200a43b'
=============================== Test Results ===============================
Commit Range Checked = 0ccbf4f61f326437ea971ff5eca1eb570e8e4711...7e9b710922cae26f2bcaf92b858ba00bc6b5f040
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
=============================== Cleanup ===============================
Removing all generated output
REMOVING: 0ccbf4f61f326437ea971ff5eca1eb570e8e4711
REMOVING: 02babc6b5a46bda3075bf071426fa20bf200a43b
REMOVING: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
