+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config
Directory 1 is 73dc365c77ab4bf2405d753f167307ae9be330a0
Directory 2 is 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb
Using reporting threshold: 0.0
The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
================================================ arm_97 ================================================
>The linux diff detected differences in arm_97_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/arm_97_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/arm_97_stats.nc have different numbers of timesteps (5580 vs 0).
>>>Differences in common variables detected for case arm_97<<<
=====================================================================================================
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/arm_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/arm_stats.nc have different numbers of timesteps (870 vs 0).
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ atex ================================================
>The linux diff detected differences in atex_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/atex_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/atex_stats.nc have different numbers of timesteps (480 vs 0).
>>>Differences in common variables detected for case atex<<<
=====================================================================================================
================================================ bomex ================================================
>The linux diff detected differences in bomex_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/bomex_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/bomex_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case bomex<<<
=====================================================================================================
================================================ dycoms2_rf01 ================================================
>The linux diff detected differences in dycoms2_rf01_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/dycoms2_rf01_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/dycoms2_rf01_stats.nc have different numbers of timesteps (240 vs 0).
>>>Differences in common variables detected for case dycoms2_rf01<<<
=====================================================================================================
================================================ dycoms2_rf02_ds ================================================
>The linux diff detected differences in dycoms2_rf02_ds_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/dycoms2_rf02_ds_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/dycoms2_rf02_ds_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case dycoms2_rf02_ds<<<
=====================================================================================================
================================================ gabls3_night ================================================
>The linux diff detected differences in gabls3_night_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/gabls3_night_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/gabls3_night_stats.nc have different numbers of timesteps (108 vs 0).
>>>Differences in common variables detected for case gabls3_night<<<
=====================================================================================================
================================================ lba ================================================
>The linux diff detected differences in lba_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/lba_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/lba_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case lba<<<
=====================================================================================================
================================================ rico ================================================
>The linux diff detected differences in rico_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/rico_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/rico_stats.nc have different numbers of timesteps (864 vs 0).
>>>Differences in common variables detected for case rico<<<
=====================================================================================================
================================================ twp_ice ================================================
>The linux diff detected differences in twp_ice_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/twp_ice_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/twp_ice_stats.nc have different numbers of timesteps (165 vs 0).
>>>Differences in common variables detected for case twp_ice<<<
=====================================================================================================
================================================ wangara ================================================
>The linux diff detected differences in wangara_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/wangara_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/wangara_stats.nc have different numbers of timesteps (480 vs 0).
>>>Differences in common variables detected for case wangara<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 0 cases []
Fail: 11 cases ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
Directory 1 is 73dc365c77ab4bf2405d753f167307ae9be330a0
Directory 2 is 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb
Using reporting threshold: 0.0
The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
================================================ arm_97 ================================================
>The linux diff detected differences in arm_97_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/arm_97_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/arm_97_stats.nc have different numbers of timesteps (5580 vs 0).
>>>Differences in common variables detected for case arm_97<<<
=====================================================================================================
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/arm_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/arm_stats.nc have different numbers of timesteps (870 vs 0).
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ atex ================================================
>The linux diff detected differences in atex_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/atex_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/atex_stats.nc have different numbers of timesteps (480 vs 0).
>>>Differences in common variables detected for case atex<<<
=====================================================================================================
================================================ bomex ================================================
>The linux diff detected differences in bomex_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/bomex_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/bomex_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case bomex<<<
=====================================================================================================
================================================ dycoms2_rf01 ================================================
>The linux diff detected differences in dycoms2_rf01_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/dycoms2_rf01_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/dycoms2_rf01_stats.nc have different numbers of timesteps (240 vs 0).
>>>Differences in common variables detected for case dycoms2_rf01<<<
=====================================================================================================
================================================ dycoms2_rf02_ds ================================================
>The linux diff detected differences in dycoms2_rf02_ds_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/dycoms2_rf02_ds_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/dycoms2_rf02_ds_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case dycoms2_rf02_ds<<<
=====================================================================================================
================================================ gabls3_night ================================================
>The linux diff detected differences in gabls3_night_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/gabls3_night_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/gabls3_night_stats.nc have different numbers of timesteps (108 vs 0).
>>>Differences in common variables detected for case gabls3_night<<<
=====================================================================================================
================================================ lba ================================================
>The linux diff detected differences in lba_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/lba_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/lba_stats.nc have different numbers of timesteps (360 vs 0).
>>>Differences in common variables detected for case lba<<<
=====================================================================================================
================================================ rico ================================================
>The linux diff detected differences in rico_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/rico_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/rico_stats.nc have different numbers of timesteps (864 vs 0).
>>>Differences in common variables detected for case rico<<<
=====================================================================================================
================================================ twp_ice ================================================
>The linux diff detected differences in twp_ice_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/twp_ice_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/twp_ice_stats.nc have different numbers of timesteps (165 vs 0).
>>>Differences in common variables detected for case twp_ice<<<
=====================================================================================================
================================================ wangara ================================================
>The linux diff detected differences in wangara_stats.nc<
Warning! 73dc365c77ab4bf2405d753f167307ae9be330a0/wangara_stats.nc and 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb/wangara_stats.nc have different numbers of timesteps (480 vs 0).
>>>Differences in common variables detected for case wangara<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 0 cases []
Fail: 11 cases ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 73dc365c77ab4bf2405d753f167307ae9be330a0
Checking Commit: 73dc365c77ab4bf2405d753f167307ae9be330a0
Running: final commit to check, not labelled BIT_CHANGING
Checking out 73dc365c77ab4bf2405d753f167307ae9be330a0
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Checking out 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Diffing: 'run_scripts/run_bindiff_all.py 73dc365c77ab4bf2405d753f167307ae9be330a0 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb'
ISSUE WITH COMMIT DETECTED: 73dc365c77ab4bf2405d753f167307ae9be330a0 differs from 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb
Finding all BIT_CHANGING commits in range: 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb...73dc365c77ab4bf2405d753f167307ae9be330a0
Output from 73dc365c77ab4bf2405d753f167307ae9be330a0 already saved
Output from 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb already saved
Diffing: 'run_scripts/run_bindiff_all.py 73dc365c77ab4bf2405d753f167307ae9be330a0 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb'
Found:
73dc365c77ab4bf2405d753f167307ae9be330a0
=============================== Test Results ===============================
Commit Range Checked = 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb...73dc365c77ab4bf2405d753f167307ae9be330a0
New Unresolved Commits:
73dc365c77ab4bf2405d753f167307ae9be330a0
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
73dc365c77ab4bf2405d753f167307ae9be330a0
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 73dc365c77ab4bf2405d753f167307ae9be330a0
Saving into BaselineCommit: 73dc365c77ab4bf2405d753f167307ae9be330a0
=============================== Cleanup ===============================
Removing all generated output
REMOVING: 7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb
REMOVING: 73dc365c77ab4bf2405d753f167307ae9be330a0
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
73dc365c77ab4bf2405d753f167307ae9be330a0
Exiting with code: 1
