Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c # timeout=10 Commit message: "Update README.md" > git rev-list --no-walk 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2535:0: subroutine init_parameters_999( ) Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:133:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:315:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/8a4711c32fc8851f00d5f1d5dd66d164d3408a8c. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_7db479d9a5bf6e304a7e23ce3e7923103e8b40e0. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files There were some differences detected! There were differences detected in netCDF (*.nc) files. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/8a4711c32fc8851f00d5f1d5dd66d164d3408a8c. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_7db479d9a5bf6e304a7e23ce3e7923103e8b40e0. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files There were some differences detected! There were differences detected in netCDF (*.nc) files. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (7db479d9a5bf6e304a7e23ce3e7923103e8b40e0) 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Checking Commit: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Running: final commit to check, not labelled BIT_CHANGING Checking out 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c latest_revision_validated_7db479d9a5bf6e304a7e23ce3e7923103e8b40e0'  ISSUE WITH COMMIT DETECTED: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c differs from 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0 Finding all BIT_CHANGING commits in range: 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0...8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Output from 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c already saved Output from 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c latest_revision_validated_7db479d9a5bf6e304a7e23ce3e7923103e8b40e0' Found: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c =============================== Test Results =============================== Commit Range Checked = 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0...8a4711c32fc8851f00d5f1d5dd66d164d3408a8c New Unresolved Commits: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c No fake BIT_CHANGING commits found. Remaining Unresolved Commits: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c =============================== Updating Config File =============================== Saving into UnresolvedCommits: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Saving into BaselineCommit: 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: 7db479d9a5bf6e304a7e23ce3e7923103e8b40e0 RENAMING 8a4711c32fc8851f00d5f1d5dd66d164d3408a8c to latest_revision_validated_8a4711c32fc8851f00d5f1d5dd66d164d3408a8c Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE