Started by an SCM change
Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
‘Mac’ is reserved for jobs with matching label expression
Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
> git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
> git --version # timeout=10
> git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
> git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec # timeout=10
Commit message: "Removing dependency on /home/pub and moving it to /home/jenkins larson-group/sys_admin#735"
> git rev-list --no-walk f5e75e3ca1940ef435c2ecd45683d3760ec8a36d # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_wp2_wp3_module.F90:4171:8:
use constants_clubb, only: &
1
Warning: Unused parameter ‘one’ which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23:
hydromet, & ! Unused
1
Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a
/home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13:
rho_ds_zt, & ! Unused
1
Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a
../src/KK_microphys_module.F90:43:35:
subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In
1
Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
236 : call check_nan( pdf_params%covar_chi_eta_1(1,:), "pdf_params%covar_chi_eta_1(1,:)", & ! intent(in)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
238 : call check_nan( pdf_params%covar_chi_eta_2(1,:), "pdf_params%covar_chi_eta_2(1,:)", & ! intent(in)
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/numerical_check.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
3303 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F"
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/advance_clubb_core_module.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/1abe50bfdb1ad4785d9d31c0d6fd81322786eaec.
Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_f5e75e3ca1940ef435c2ecd45683d3760ec8a36d.
Diffing arm netCDF (*.nc) files
Diffing arm_97 netCDF (*.nc) files
Diffing atex netCDF (*.nc) files
Diffing bomex netCDF (*.nc) files
Diffing dycoms2_rf01 netCDF (*.nc) files
Diffing dycoms2_rf02_ds netCDF (*.nc) files
Diffing gabls3_night netCDF (*.nc) files
Diffing lba netCDF (*.nc) files
Diffing rico netCDF (*.nc) files
Diffing twp_ice netCDF (*.nc) files
Diffing wangara netCDF (*.nc) files
There were no differences detected!
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace
Trying to clone repo...
Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo
Output Save Mode: last
Using branch: master
Commits to test vs the baseline (f5e75e3ca1940ef435c2ecd45683d3760ec8a36d)
67dc7892f77f7b81f62460a0747540ea5b2afff6
1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
Making list from 'UnresolvedHiddenBitChangingCommits':
Run Output Path: repo/output
Run commands: ['repo/compile/compile.bash', 'repo/run_scripts/run_scm_all.bash --min-cases']
Diffing command: repo/run_scripts/run_bindiff_all.bash
=============================== Running Test ===============================
Parsing message from commit: 67dc7892f77f7b81f62460a0747540ea5b2afff6
Parsing message from commit: 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
Checking Commit: 67dc7892f77f7b81f62460a0747540ea5b2afff6
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
Running: final commit to check, not labelled BIT_CHANGING
Checking out 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
Running: 'repo/compile/compile.bash'
Running: 'repo/run_scripts/run_scm_all.bash --min-cases'
Output from f5e75e3ca1940ef435c2ecd45683d3760ec8a36d already saved
Diffing: 'repo/run_scripts/run_bindiff_all.bash 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec latest_revision_validated_f5e75e3ca1940ef435c2ecd45683d3760ec8a36d'
=============================== Test Results ===============================
Commit Range Checked = f5e75e3ca1940ef435c2ecd45683d3760ec8a36d...1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
No new hidden BIT_CHANGING commits found.
No fake BIT_CHANGING commits found.
No remaining unresolved hidden BIT_CHANGING commits.
=============================== Updating Config File ===============================
Saving into UnresolvedHiddenBitChangingCommits:
Saving into BaselineCommit: 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
=============================== Cleanup ===============================
Removing all but final generated output.
REMOVING: f5e75e3ca1940ef435c2ecd45683d3760ec8a36d
KEEPING: 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
RENAMING 1abe50bfdb1ad4785d9d31c0d6fd81322786eaec to latest_revision_validated_1abe50bfdb1ad4785d9d31c0d6fd81322786eaec
Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS