Started by user Gunther Huebler Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision be8c34c191362f97866647c2fc8674a71456d314 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f be8c34c191362f97866647c2fc8674a71456d314 # timeout=10 Commit message: "Adding the new pressure-related terms, wp2_pr_dfsn and wp3_pr_tp, to the --sam-style-budgets option in Pyplotgen." > git rev-list --no-walk 011c5887aea0f3f5e201866cf0b44b9e91599b66 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/2c846a5185a386c1e500c828c95f6a4a8932150a. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_011c5887aea0f3f5e201866cf0b44b9e91599b66. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/9e4a950550aac99cbf8fe1dfe2820a4d1f45b277. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/2c846a5185a386c1e500c828c95f6a4a8932150a. Diffing arm netCDF (*.nc) files *** Differences detected in arm_zt.nc! *** *** Differences detected in arm_zm.nc! *** *** Differences detected in arm_sfc.nc! *** Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files *** Differences detected in atex_zt.nc! *** *** Differences detected in atex_zm.nc! *** *** Differences detected in atex_sfc.nc! *** Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** *** Differences detected in bomex_zm.nc! *** *** Differences detected in bomex_sfc.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** *** Differences detected in dycoms2_rf01_zm.nc! *** *** Differences detected in dycoms2_rf01_sfc.nc! *** Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files *** Differences detected in gabls3_night_zt.nc! *** *** Differences detected in gabls3_night_zm.nc! *** *** Differences detected in gabls3_night_sfc.nc! *** Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files *** Differences detected in wangara_zt.nc! *** *** Differences detected in wangara_zm.nc! *** *** Differences detected in wangara_sfc.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/9e4a950550aac99cbf8fe1dfe2820a4d1f45b277. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/9e4a950550aac99cbf8fe1dfe2820a4d1f45b277. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_wp2_wp3_module.F90:4170:8: use constants_clubb, only: & 1 Warning: Unused parameter ‘one’ which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/fa20b10387fb5dc6a45800fa7eb63b972bc4070f. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/9e4a950550aac99cbf8fe1dfe2820a4d1f45b277. Diffing arm netCDF (*.nc) files *** Differences detected in arm_zt.nc! *** Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** Diffing atex netCDF (*.nc) files *** Differences detected in atex_zt.nc! *** Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** Diffing gabls3_night netCDF (*.nc) files *** Differences detected in gabls3_night_zt.nc! *** Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** Diffing wangara netCDF (*.nc) files *** Differences detected in wangara_zt.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/be8c34c191362f97866647c2fc8674a71456d314. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/fa20b10387fb5dc6a45800fa7eb63b972bc4070f. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (011c5887aea0f3f5e201866cf0b44b9e91599b66) 228f3ae7e30f0079c22bfaff5e245e63806be9c6 05678fbb8f2a39f46712194cd5ec54f9538e2c38 2c846a5185a386c1e500c828c95f6a4a8932150a 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 fa20b10387fb5dc6a45800fa7eb63b972bc4070f be8c34c191362f97866647c2fc8674a71456d314 Making list from 'UnresolvedHiddenBitChangingCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 228f3ae7e30f0079c22bfaff5e245e63806be9c6 Parsing message from commit: 05678fbb8f2a39f46712194cd5ec54f9538e2c38 Parsing message from commit: 2c846a5185a386c1e500c828c95f6a4a8932150a Parsing message from commit: 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 Found: BIT_CHANGING Parsing message from commit: fa20b10387fb5dc6a45800fa7eb63b972bc4070f Found: BIT_CHANGING Parsing message from commit: be8c34c191362f97866647c2fc8674a71456d314 Checking Commit: 228f3ae7e30f0079c22bfaff5e245e63806be9c6 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 05678fbb8f2a39f46712194cd5ec54f9538e2c38 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 2c846a5185a386c1e500c828c95f6a4a8932150a Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 Checking out 2c846a5185a386c1e500c828c95f6a4a8932150a Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 011c5887aea0f3f5e201866cf0b44b9e91599b66 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 2c846a5185a386c1e500c828c95f6a4a8932150a latest_revision_validated_011c5887aea0f3f5e201866cf0b44b9e91599b66' Checking out 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 2c846a5185a386c1e500c828c95f6a4a8932150a already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 2c846a5185a386c1e500c828c95f6a4a8932150a' Commit '9e4a950550aac99cbf8fe1dfe2820a4d1f45b277' is BIT_CHANGING and properly labelled as such. Checking Commit: fa20b10387fb5dc6a45800fa7eb63b972bc4070f Output from 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 already saved Output from 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277' Checking out fa20b10387fb5dc6a45800fa7eb63b972bc4070f Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash fa20b10387fb5dc6a45800fa7eb63b972bc4070f 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277' Commit 'fa20b10387fb5dc6a45800fa7eb63b972bc4070f' is BIT_CHANGING and properly labelled as such. Checking Commit: be8c34c191362f97866647c2fc8674a71456d314 Running: final commit to check, not labelled BIT_CHANGING Checking out be8c34c191362f97866647c2fc8674a71456d314 Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from fa20b10387fb5dc6a45800fa7eb63b972bc4070f already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash be8c34c191362f97866647c2fc8674a71456d314 fa20b10387fb5dc6a45800fa7eb63b972bc4070f' =============================== Test Results =============================== Commit Range Checked = 011c5887aea0f3f5e201866cf0b44b9e91599b66...be8c34c191362f97866647c2fc8674a71456d314 =============================== Updating Config File =============================== =============================== Cleanup =============================== Removing all but final generated output. REMOVING: 011c5887aea0f3f5e201866cf0b44b9e91599b66 REMOVING: 2c846a5185a386c1e500c828c95f6a4a8932150a REMOVING: 9e4a950550aac99cbf8fe1dfe2820a4d1f45b277 REMOVING: fa20b10387fb5dc6a45800fa7eb63b972bc4070f KEEPING: be8c34c191362f97866647c2fc8674a71456d314 RENAMING be8c34c191362f97866647c2fc8674a71456d314 to latest_revision_validated_be8c34c191362f97866647c2fc8674a71456d314 Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS