Started by an SCM change Obtained jenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 034f61908b84f2574a06cc7da3db70d50696e69d (refs/remotes/origin/master) Commit message: "The old mixing length calculation seems to be making dycoms2_rf02 fail when using the bicgstab solver. This case was always unstable with bicgstab, so it seemed more like luck before that it was passing. This change just removes the failed output data to prevent pyplotgen from crashing" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 034f61908b84f2574a06cc7da3db70d50696e69d # timeout=10 > git rev-list --no-walk 765ae7c30cda88e01b27cd1ee4277d54e4fcb752 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_e3sm_flags_gfortran_test_config Directory 1 is 034f61908b84f2574a06cc7da3db70d50696e69d Directory 2 is 765ae7c30cda88e01b27cd1ee4277d54e4fcb752 Using reporting threshold: 0.0 The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ================================================ arm_97 ================================================ >No differences detected by the linux diff in arm_97_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case arm_97.<<< ===================================================================================================== ================================================ arm ================================================ >No differences detected by the linux diff in arm_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ===================================================================================================== ================================================ atex ================================================ >No differences detected by the linux diff in atex_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case atex.<<< ===================================================================================================== ================================================ bomex ================================================ >No differences detected by the linux diff in bomex_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== ================================================ dycoms2_rf02_ds ================================================ >No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<< ===================================================================================================== ================================================ gabls3_night ================================================ >No differences detected by the linux diff in gabls3_night_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<< ===================================================================================================== ================================================ lba ================================================ >No differences detected by the linux diff in lba_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case lba.<<< ===================================================================================================== ================================================ rico ================================================ >No differences detected by the linux diff in rico_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case rico.<<< ===================================================================================================== ================================================ twp_ice ================================================ >No differences detected by the linux diff in twp_ice_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<< ===================================================================================================== ================================================ wangara ================================================ >No differences detected by the linux diff in wangara_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case wangara.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 11 cases ['arm_97', 'arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] Fail: 0 cases [] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test Using /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases -config e3sm_maint32'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: c15480a71ed50936412eb66827a86bf69c490a37 Found: RESOLVED:8ab3902e812c2883976b4f1f57c085d682666d92 Parsing message from commit: 034f61908b84f2574a06cc7da3db70d50696e69d Checking Commit: c15480a71ed50936412eb66827a86bf69c490a37 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 034f61908b84f2574a06cc7da3db70d50696e69d Running: final commit to check, not labelled BIT_CHANGING Checking out 034f61908b84f2574a06cc7da3db70d50696e69d Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases -config e3sm_maint32' Checking out 765ae7c30cda88e01b27cd1ee4277d54e4fcb752 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases -config e3sm_maint32' Diffing: 'run_scripts/run_bindiff_all.py 034f61908b84f2574a06cc7da3db70d50696e69d 765ae7c30cda88e01b27cd1ee4277d54e4fcb752' =============================== Test Results =============================== Commit Range Checked = 765ae7c30cda88e01b27cd1ee4277d54e4fcb752...034f61908b84f2574a06cc7da3db70d50696e69d No new Unresolved commits found. No fake BIT_CHANGING commits found. WARNING: 8ab3902e812c2883976b4f1f57c085d682666d92 labelled as RESOLVED, but was not listed as unresolved. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 034f61908b84f2574a06cc7da3db70d50696e69d =============================== Cleanup =============================== Removing all generated output REMOVING: 765ae7c30cda88e01b27cd1ee4277d54e4fcb752 REMOVING: 034f61908b84f2574a06cc7da3db70d50696e69d ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS