Started by an SCM change
Obtained jenkins_tests/cam_plot_scam_ifort/Jenkinsfile from git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Still waiting to schedule task
Waiting for next available executor
Running on <a href='/jenkins/computer/overlie/' class='jenkins-table__link model-link model-link--float'>overlie</a> in /home/jenkins/workspace/cam_plot_scam_ifort
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git init /home/jenkins/workspace/cam_plot_scam_ifort # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision fe5c039b9bba8aa4acb3a124acc0ad44cbe4cf2d (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit 418c202a9b0512fc8c4f421918cc978164db852d Author: Gunther Huebler Date: Wed Dec 17 14:58:28 2025 -0600 Fixes for fill_holes and edsclr code (#1266) * Fixing bugs in new hole fillers that caused error when ran in descending mode, the issue was that dz is negative in descending mode, so we need abs() around it when calculating the normalized mass. Also fixing a related bug in the way edsclr code calls the hole filler - it was not using the generalized bounds. Also removing the ifdef in favor of normal ifs"
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f fe5c039b9bba8aa4acb3a124acc0ad44cbe4cf2d # timeout=10
 &gt; git rev-list --no-walk f1c6a5ece8f3616577a7dca89d68f4fe968ffa86 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="14" startId="14" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="15" startId="15" enclosingId="14" label="Checkout Externals and Copy Custom Files">[Pipeline] { (Checkout Externals and Copy Custom Files)
</span><span class="pipeline-new-node" nodeId="16" enclosingId="15">[Pipeline] sh
</span><span class="pipeline-node-16">+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
</span><span class="pipeline-new-node" nodeId="17" startId="15">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="18" startId="14">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="19" startId="19" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="20" startId="20" enclosingId="19" label="Sed Commands">[Pipeline] { (Sed Commands)
</span><span class="pipeline-new-node" nodeId="21" enclosingId="20">[Pipeline] sh
</span><span class="pipeline-node-21">+ sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
</span><span class="pipeline-new-node" nodeId="22" enclosingId="20">[Pipeline] sh
</span><span class="pipeline-node-22">+ sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
</span><span class="pipeline-new-node" nodeId="23" startId="20">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="24" startId="19">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="25" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span><span class="pipeline-new-node" nodeId="27" enclosingId="26">[Pipeline] sh
</span><span class="pipeline-node-27">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97
rm: cannot remove '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm/obj': Directory not empty
</span><span class="pipeline-new-node" nodeId="28" startId="26">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="29" startId="25">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="30" startId="30" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="31" startId="31" enclosingId="30" label="Run ATEX">[Pipeline] { (Run ATEX)
</span>Stage "Run ATEX" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="32" enclosingId="31">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="33" startId="31">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="30">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="35" startId="35" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="36" startId="36" enclosingId="35" label="Run ARM97 with SILHS">[Pipeline] { (Run ARM97 with SILHS)
</span>Stage "Run ARM97 with SILHS" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="37" enclosingId="36">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="38" startId="36">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="39" startId="35">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="40" startId="40" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="41" startId="41" enclosingId="40" label="Compile and Run CLUBB">[Pipeline] { (Compile and Run CLUBB)
</span>Stage "Compile and Run CLUBB" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="42" enclosingId="41">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="43" startId="41">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="44" startId="40">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="45" startId="45" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="46" startId="46" enclosingId="45" label="Plot">[Pipeline] { (Plot)
</span>Stage "Plot" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="47" enclosingId="46">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="48" startId="46">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="49" startId="45">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="50" startId="50" enclosingId="13">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="51" startId="51" enclosingId="50" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="52" startId="52" enclosingId="51">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="53" startId="53" enclosingId="52">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="54" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-54">+ chmod -R 755 /home/jenkins/cam_output/
</span><span class="pipeline-new-node" nodeId="55" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-55">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="56" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-56">ATEX WARNING: One or more of the build logs were not zipped, this means compilation did not finish
</span><span class="pipeline-new-node" nodeId="57" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-57">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="58" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-58">ATEX WARNING: One or more of the run logs were not zipped, this means the code did not run to completion
</span><span class="pipeline-new-node" nodeId="59" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-59">+ cat '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*'
cat: '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="60" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-60">ATEX WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation
</span><span class="pipeline-new-node" nodeId="61" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-61">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="62" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-62">ARM97 WARNING: One or more of the build logs were not zipped, this means compilation did not finish
</span><span class="pipeline-new-node" nodeId="63" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-63">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="64" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-64">ARM97 WARNING: One or more of the run logs were not zipped, this means the code did not run to completion
</span><span class="pipeline-new-node" nodeId="65" enclosingId="53">[Pipeline] sh
</span><span class="pipeline-node-65">+ cat '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*'
cat: '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="66" enclosingId="53">[Pipeline] echo
</span><span class="pipeline-node-66">ARM97 WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation
</span><span class="pipeline-new-node" nodeId="67" startId="53">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="68" startId="52">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="69" startId="69" enclosingId="51">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="70" startId="70" enclosingId="69">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="71" startId="70">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="72" startId="69">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="73" startId="51">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="74" startId="50">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="75" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="76" startId="12">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="77" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="78" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="79" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="80" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="81" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE