Started by user Gunther HueblerhueblerGunther Huebler746fc57497840efaa7acc394c10ac9c6892ef162206fc57497840efaa7acc394c10ac9c6892ef16220origin/clubb_silhs_devel6fc57497840efaa7acc394c10ac9c6892ef162206fc57497840efaa7acc394c10ac9c6892ef16220origin/clubb_silhs_devel69cca799cfb394e7eeadc21211ae811b4a370d31eecca799cfb394e7eeadc21211ae811b4a370d31eeorigin/changes_to_not_breakcca799cfb394e7eeadc21211ae811b4a370d31eecca799cfb394e7eeadc21211ae811b4a370d31eeorigin/changes_to_not_break3703f9d8c17f2480940da2674673b95b8764c1572063f9d8c17f2480940da2674673b95b8764c157206refs/remotes/origin/clubb_silhs_devel3f9d8c17f2480940da2674673b95b8764c1572063f9d8c17f2480940da2674673b95b8764c157206refs/remotes/origin/clubb_silhs_devel3f9d8c17f2480940da2674673b95b8764c1572063f9d8c17f2480940da2674673b95b8764c157206refs/remotes/origin/clubb_silhs_develhttps://github.com/larson-group/cam.gitfalse#37024181641992202cam_global_ERP_Ln9_gfortran_test #370370false3701707SUCCESS1715969524856http://carson.math.uwm.edu/jenkins/view/all/job/cam_global_ERP_Ln9_gfortran_test/370/- src/chemistry/pp_geoschem/.exclude11890621257a43a5226b8b24e0fe526d171a034e1638907060000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFeat: Changes to include GEOS-Chem as a chemistry option for CESM
(1) This introduces an option to compile GEOS-Chem src files.
(2) Interface is inexistant so far
(3) CAM still uses the Terminator chem package to satisfy dependencies
Reproducing commit from MSL - Jan 19, 2018
2021-12-07 12:57:40 -070011890621257a43a5226b8b24e0fe526d171a034eFeat: Changes to include GEOS-Chem as a chemistry option for CESMaddsrc/chemistry/pp_geoschem/.exclude
- src/chemistry/pp_geoschem/chem_mods.F90src/chemistry/pp_geoschem/aero_model.F90.gitignorecime_config/config_component.xmlsrc/chemistry/pp_geoschem/mo_lightning.F90src/chemistry/pp_geoschem/chem_prod_loss_diags.F90bld/configurecime_config/config_compsets.xmlbld/config_files/definition.xmlsrc/chemistry/pp_geoschem/getLandTypes.F90src/chemistry/pp_geoschem/rate_diags.F90src/chemistry/pp_geoschem/mo_drydep.F90bld/perl5lib/Build/ChemNamelist.pmsrc/chemistry/pp_geoschem/chemistry.F90bld/namelist_files/namelist_definition.xmlcime_config/buildcppsrc/chemistry/pp_geoschem/charge_neutrality.F90src/cpl/cam_cpl_indices.F90src/chemistry/pp_geoschem/.excludebld/build-namelistsrc/control/camsrfexch.F90src/chemistry/pp_geoschem/gc_emissions.F90src/cpl/atm_import_export.F90src/chemistry/pp_geoschem/short_lived_species.F90src/chemistry/pp_geoschem/clybry_fam.F90src/chemistry/pp_geoschem/mo_apex.F90src/chemistry/pp_geoschem/mo_gas_phase_chemdr.F90bld/namelist_files/use_cases/geoschem.xmlsrc/chemistry/pp_geoschem/upper_bc.F90src/chemistry/pp_geoschem/epp_ionization.F90Externals_CAM.cfgsrc/chemistry/pp_geoschem/mo_sim_dat.F90src/chemistry/pp_geoschem/mo_chem_utls.F90bld/namelist_files/use_cases/geoschem_baro_moist.xmla5bf274c92c4b95d7f2b1076a5fcf415fe1e63961638907223000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed of 50+ commits from Thibaud Fritz
Feat: Update config files to include GEOS-Chem option for CAM
(1) Update config files in cam/bld/
(2) Update config files in cam/cime_config
Feat: Add customized chemistry.F90 for GEOS-Chem:
*Reproducing commit from MSL - Mar 6, 2018
Feat: Initial implementation of compilable code
(1) The code can now be compiled using a CAM 4.0 + "dummy" GEOS-Chem
component set (compset FGC). This is based on the "tropospheric
mozart" set.
*Reproducing commit from SDE - May 17, 2018
Feat: Make radiatively-active species into chemical constituants
(1) Added N2O, CH4, CFC11, CFC12
Feat: Get tracers and species from input.geos and KPP
(1) Tracer lists are now acquired from the input files and from the
pre-built KPP mechanism
*Reproducing commit from SDE - May 19, 2018
Feat: Add additional flags when compiling GEOS-Chem
Fix: Update folder name following version 12.6.0
Feat: Allocate major state variables (Input, Met, Chem)
(1) Allocating GEOS-Chem state variables
(2) Setting input.geos path as a module variable
*Reproducing commit from SDE - May 19, 2018
Chore: Cleanup and capitalization
Feat: Initialize core GEOS-Chem modules
(1) Initializes ChmState, GrdState and MetState objects
(2) Grid objects are currently initialized identically. However, they
should be chunk-dependent. The grids are set based on the lat/lon
edges for now, using GEOS-Chem's SetGridFromCtrEdges subroutine
(3) Initializes Input_Opt
(4) Added subroutine to update time-steps within GEOS-Chem
(5) Added error trapping statements
Feat: Add initialization of Linoz module and passing CHEM_INPUTS
(1) Initializing Linoz module
(2) Passing CHEM_INPUTS to Input_Opt
(3) Remove incorrect overwrite of NTracers
Feat: Initialize and cleanup State_Chm and State_Met
Feat: Initialize Drydep_Mod
(1) Initialize Drydep_Mod
(2) Update .exclude file to include GeosCore/drydep_mod.F
Feat: Add Init_Error to chem_init for GEOS-Chem
Feat: Initialize and cleanup GEOS-Chem modules
(1) Add calls to module initialization and cleanup subroutines
(2) Update .exclude file
Feat: Get grid area and Ap and Bp values from CAM
(1) Get grid area from CAM interface
(2) Pass CAM's Ap and Bp values to GEOS-Chem's Pressure_Mod
(3) Call to Cleanup_Pressure
Feat: Affect data to State_Chm
Feat: Initialize chemistry, add missing cleanup routines
Feat: Initialize pressure transfer
Feat: Add first call to chemistry
Feat: Register all tracers using species database
(1) Register species
(2) Initial step towards the update of State_Met
Feat: Fill key variables in State_Met
Feat: Add PBL height transfer capability
(1) Enforce lat/lonMidArr to be R4 not FP
Feat: Enforce correct tracer registration
Feat: Add initialization of short-lived species
Feat: Update surface area during chemistry loop
Feat: Use reference MMRs when queried for ICs
(1) Zero reference MMRs at initialization
(2) Use reference MMRs when queried for initial conditions
Feat: Groundwork for correctly reporing H2O tendencies
(1) Add indices to key species
Feat: Add all advected species to output
(1) Add advected species to output
(2) Force precision of H2O to be r8
(3) Fixed capitalization of variables
Feat: Make short-lived species persist between time steps
Feat: Set GEOS-Chem data from CAM
(1) Date information is now propagated to GEOS-Chem. Algorithm needs
tweaking (seems to give a date 1 minute earlier than it should).
Also currently force the year to be 2000 as the default CAM year
is 0000.
Feat: Disable stratospheric aerosols in GEOS-Chem
Feat: Progate more met fields to State_Met using CAM data
Feat: Change NY to PCOLS for consistency and add step count tracking
Feat: Increased default list of diagnostics for GEOS-Chem
Feat: Implement GEOS-Chem wet deposition + Estimate of 2D cloudiness
(1) Implemented GEOS-Chem wet deposition
(2) CAM does not provide an estimate of 2D cloud cover, so we use an
estimate (maximum 3D cloudiness in vertical column). This matches
the technique originally used for GCAP in GEOS-Chem.
(3) Fix Z0 not being assigned
Feat: Move SLS information to chem_mods + Emission module
(1) Move tracer and SLS information out to chem_mods
(2) Added temporary NO source to provide useful output
(3) Initial code stub for an emissions module
Fix: Fix reading of tracers in input.geos
(1) Tracers in input.geos
(2) Fix indentation
Chore: Now compiling GEOS-Chem with -DMODEL_
Feat: Added wet/(dry) deposition. See more comments below!
(01) Added definition of MaxTropLev, MaxStratLev and MaxChemLev. This
will require some additional thought
(02) As of right now, Linoz is turned off as the current grid doesn't
extend past 30 km, causing segmentation when running with Linoz
turned on
(03) Added code that's commented out right now for future development
(HEMCO, Olson landmap, convection, ...)
(04) Added field descrition and unit of State_Met variables when
converted from CESM to State_Met
(05) Updated compution of cloud optical depth. Following what MOZART
does.
(06) Now correctly initializing InChemGrid to .True. everywhere
(07) Added newDay, newMonth variables
(08) Added wet deposition
(09) Added dry deposition. However, it is purely a software right now,
as it runs without initializing land types
(10) Uniformization of variables
Chore: Remove debug
Feat: Deal with compile-time definition of GEOS-Chem dry dep. species
(1) Update ChemNamelist to be able to read deposition species from .xml
files and filtering these with the species list from mo_sim_dat.F90.
This last file lists all GEOS-Chem species and is only read at
compile time and is not compiled since GEOS-Chem tracers and species
are defined at run time from input.geos and KPP files.
(2) Update geoschem.xml to now list dry and wet deposition species
Feat: Implement dry deposition in CESM/GC
(1) Different options are available to compute dry deposition
velocities:
1. All deposition velocities are computed from GEOS-Chem using data
from HEMCO
2. CLM passes dry deposition velocities over land and ocean and ice
velocities are computed from GEOS-Chem using data from HEMCO
3. CLM passes dry deposition velocities over land and ocean and ice
velocities are computed in a similar way as MOZART
Feat: Add missing file from last commit to replicate MOZART's dry dep. calculations
Feat: Add Externals to download GEOS-Chem source code
Feat: Add mo_chem_utils.F90 required for mo_drydep_mod
Feat: Update .exclude
Feat: Import CLM4.0/4.5/5.0 data and use it for GEOS-Chem
(1) Import data from CLM
(2) Add compset to run GEOS-Chem with CLM4.5/5.0
(3) Add routine getLandTypes to convert CLM to OlsonLandMaps. More work
is needed to convert CLM4.5 land types
(4) CAM's building procedure has been modified to include the right
version of CLM
(5) Modify .exclude
Style: Fix typos that got introduced when converting commits to fork
Feat: Modify Externals_CAM.cfg to download GEOS-Chem code
Revert "Feat: Modify Externals_CAM.cfg to download GEOS-Chem code"
Feat: Update .gitignore to ignore GEOS-Chem repo
2021-12-07 13:00:23 -0700a5bf274c92c4b95d7f2b1076a5fcf415fe1e6396Squashed of 50+ commits from Thibaud Fritzaddsrc/chemistry/pp_geoschem/epp_ionization.F90addsrc/chemistry/pp_geoschem/mo_apex.F90addsrc/chemistry/pp_geoschem/mo_gas_phase_chemdr.F90editbld/namelist_files/namelist_definition.xmleditcime_config/buildcppaddbld/namelist_files/use_cases/geoschem_baro_moist.xmladdsrc/chemistry/pp_geoschem/mo_lightning.F90addsrc/chemistry/pp_geoschem/mo_chem_utls.F90editsrc/cpl/atm_import_export.F90addsrc/chemistry/pp_geoschem/getLandTypes.F90addsrc/chemistry/pp_geoschem/chem_prod_loss_diags.F90addsrc/chemistry/pp_geoschem/short_lived_species.F90editExternals_CAM.cfgaddsrc/chemistry/pp_geoschem/mo_sim_dat.F90editcime_config/config_compsets.xmladdsrc/chemistry/pp_geoschem/chemistry.F90editsrc/chemistry/pp_geoschem/.excludeeditsrc/cpl/cam_cpl_indices.F90addsrc/chemistry/pp_geoschem/aero_model.F90addbld/namelist_files/use_cases/geoschem.xmleditbld/config_files/definition.xmledit.gitignoreeditbld/perl5lib/Build/ChemNamelist.pmaddsrc/chemistry/pp_geoschem/charge_neutrality.F90editbld/build-namelistaddsrc/chemistry/pp_geoschem/rate_diags.F90addsrc/chemistry/pp_geoschem/chem_mods.F90editsrc/control/camsrfexch.F90addsrc/chemistry/pp_geoschem/upper_bc.F90editbld/configureaddsrc/chemistry/pp_geoschem/clybry_fam.F90editcime_config/config_component.xmladdsrc/chemistry/pp_geoschem/mo_drydep.F90addsrc/chemistry/pp_geoschem/gc_emissions.F90
- src/physics/cam/phys_control.F90src/control/runtime_opts.F90src/chemistry/pp_geoschem/.exclude.gitignoresrc/control/cam_comp.F90src/chemistry/pp_geoschem/chemistry.F90bld/configurebld/namelist_files/namelist_definition.xmlExternals_CAM.cfgsrc/chemistry/pp_geoschem/mo_sim_dat.F90src/chemistry/pp_geoschem/mo_tracname.F90bld/config_files/definition.xml94b742390f57fff227e93faba2085433a0d4937e1638907325000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 5 commits from Haipeng Lin
Feat: Implement HEMCO_CESM within CESM-GC (Initial attempt in syncing CAM sources)
Feat: HEMCO_CESM code integration (full). Add mo_sim_dat and mo_tracname
Fix: Call set_sim_dat from chemistry.F90 to pass solsym to HEMCO_CESM.
Fix: Do not assign other variables within mo_sim_dat -- to discuss
Fix: Comment out mo_sim_dat except solsym, expand solsym size to nTracersMax
*This might not be needed after all as HEMCO_CESM now reads tracer names from chem_mods. But fixing this so it doesn't infinite loop.
2021-12-07 13:02:05 -070094b742390f57fff227e93faba2085433a0d4937eSquashed 5 commits from Haipeng LineditExternals_CAM.cfgaddsrc/chemistry/pp_geoschem/mo_tracname.F90editsrc/physics/cam/phys_control.F90editsrc/chemistry/pp_geoschem/chemistry.F90editbld/namelist_files/namelist_definition.xmleditsrc/chemistry/pp_geoschem/mo_sim_dat.F90editbld/config_files/definition.xmleditsrc/control/runtime_opts.F90editbld/configureeditsrc/chemistry/pp_geoschem/.excludeedit.gitignoreeditsrc/control/cam_comp.F90
- src/chemistry/pp_geoschem/chemistry.F90src/chemistry/pp_geoschem/getLandTypes.F90b25ec88bbc2ff2d46bea46c7c897e222e94bb04d1638907325000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 2 commits from Thibaud Fritz
Feat: Add Olson / CLM land type mapping for CLM4.5/5.0
Feat: Add FAST_JX_DIR in Input_Opt. Remove hard-wired paths in fast_jx
2021-12-07 13:02:05 -0700b25ec88bbc2ff2d46bea46c7c897e222e94bb04dSquashed 2 commits from Thibaud Fritzeditsrc/chemistry/pp_geoschem/chemistry.F90editsrc/chemistry/pp_geoschem/getLandTypes.F90
- bld/configuresrc/chemistry/pp_geoschem/chemistry.F90Externals_CAM.cfgsrc/chemistry/pp_geoschem/.exclude63df68000515bcd439b621f10d08ab0ab35961fd1638907325000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 4 commits from Lizzie Lundgren
Change GEOS-Chem source to CESM-GC GitHub organization and branch name
Use GEOS-Chem branch feature/13.0.0+CESM
Update HEMCO interfaces directory name in configure
Partial updates to enable GEOS-Chem dev/13.0.0 to build in CESM
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2021-12-07 13:02:05 -070063df68000515bcd439b621f10d08ab0ab35961fdSquashed 4 commits from Lizzie LundgreneditExternals_CAM.cfgeditbld/configureeditsrc/chemistry/pp_geoschem/.excludeeditsrc/chemistry/pp_geoschem/chemistry.F90
- cime_config/config_component.xmlsrc/chemistry/bulk_aero/aero_model.F90src/chemistry/pp_geoschem/mo_lightning.F90bld/configuresrc/chemistry/geoschem/m_spc_id.F90src/chemistry/mozart/mo_chem_utls.F90src/chemistry/geoschem/upper_bc.F90cime_config/config_compsets.xmlbld/config_files/definition.xmlsrc/chemistry/pp_geoschem/getLandTypes.F90src/chemistry/geoschem/mo_gas_phase_chemdr.F90bld/perl5lib/Build/ChemNamelist.pmbld/namelist_files/namelist_definition.xmlsrc/chemistry/pp_geoschem/charge_neutrality.F90src/chemistry/modal_aero/modal_aero_data.F90src/chemistry/geoschem/mo_setinv.F90src/chemistry/pp_geoschem/.excludebld/build-namelistsrc/chemistry/geoschem/chem_prod_loss_diags.F90src/chemistry/aerosol/drydep_mod.F90src/chemistry/geoschem/short_lived_species.F90src/chemistry/geoschem/mo_tracname.F90src/chemistry/pp_geoschem/mo_gas_phase_chemdr.F90src/chemistry/geoschem/getLandTypes.F90bld/namelist_files/use_cases/geoschem.xmlcime_config/buildnmlsrc/chemistry/geoschem/mo_drydep.F90src/chemistry/aerosol/aer_drydep_mod.F90src/chemistry/pp_geoschem/epp_ionization.F90src/chemistry/geoschem/mo_chem_utls.F90src/chemistry/pp_geoschem/mo_chem_utls.F90src/chemistry/geoschem/tracer_srcs.F90src/chemistry/pp_geoschem/chem_mods.F90src/chemistry/pp_geoschem/aero_model.F90src/chemistry/pp_geoschem/chem_prod_loss_diags.F90src/chemistry/geoschem/chem_mods.F90bld/namelist_files/use_cases/sd_geoschem.xmlsrc/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/pp_geoschem/mo_tracname.F90src/chemistry/geoschem/mo_neu_wetdep.F90src/chemistry/geoschem/mo_apex.F90bld/namelist_files/use_cases/hist_geoschem.xmlsrc/chemistry/pp_geoschem/rate_diags.F90src/chemistry/geoschem/gas_wetdep_opts.F90src/chemistry/pp_geoschem/mo_drydep.F90src/chemistry/geoschem/clybry_fam.F90src/chemistry/pp_geoschem/chemistry.F90src/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/geoschem/mo_lightning.F90src/chemistry/geoschem/chemistry.F90src/chemistry/pp_geoschem/gc_emissions.F90src/chemistry/modal_aero/aero_model.F90src/chemistry/geoschem/fire_emissions.F90src/chemistry/geoschem/mo_mean_mass.F90src/chemistry/geoschem/.excludesrc/chemistry/pp_geoschem/clybry_fam.F90src/chemistry/pp_geoschem/short_lived_species.F90src/chemistry/geoschem/epp_ionization.F90src/chemistry/geoschem/mo_ghg_chem.F90src/chemistry/geoschem/rate_diags.F90src/chemistry/pp_geoschem/mo_apex.F90src/chemistry/geoschem/tracer_cnst.F90src/chemistry/pp_geoschem/upper_bc.F90cime_config/config_pes.xmlsrc/chemistry/geoschem/charge_neutrality.F90Externals_CAM.cfgsrc/chemistry/pp_geoschem/mo_sim_dat.F90src/chemistry/geoschem/mo_sim_dat.F909a9ead503679507c872b20ce2aa5665c8ea6c9741638907805000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 60+ commits from Thibaud Fritz
Feat: Increase nchem_adv
Feat: Define GEOS-Chem deposition species in geoschem.xml
Feat: Update solsym based on gckpp_Monitor
(1) solsym needs to be defined explicitely, as it is parsed at compile
time.
Feat: Update .exclude to now include input_mod and pops_mod.F90
Feat: Changes required to make GEOS-Chem 13.0 work with CESM
Feat: Set State_Met%Salinity and Iodide to 0. Will be read from HEMCO
Feat: Compute isLand/Water/Ice/Snow after AirQnt + Get fields from HEMCO
(1) Get IODIDE surface concentration and SALINITY from HEMCO
Feat: Kludge gaseous species names to match CESM restart file:
(1) Bromine, chlorine, iodine and lumped species are not in CESM restart
file. We can choose to load these from a GEOS-Chem restart file but
this is future work.
Feat: Rename CAM's drydep_mod to aer_drydep_mod
Feat: Print dep. lists when getting from namelist
Feat: Allow MAM to compile with CESM-GC
Feat: Remove unused use statement
Feat: Updates to make MAM4 interchange data with CESM-GC
Compile time changes:
(1) prescribe_aerosols is set to FALSE when $chem contains geoschem
(2) Replace aerosol deposition species with MAM4 aerosols in nml files
(3) Remove pp_geoschem/aero_model. Currently, GEOS-Chem only works
with MAM(4) turned on. If MAM is to be switched off in the future,
then the compiler should choose to compile pp_geoschem/aero_model
(which is just a dummy, almost empty file) over
modal_aero/aero_model.F90
Code changes:
(1) Make xname_massptr a public and protected variable. It is used to
establish a mapping between MAM4 and GEOS-Chem aerosols
(2) Add map2MAM4(:,:) in chem_mods and set number of fixed species to
6 rather than 4
(3) Add dummy constituents for GEOS-Chem aerosols. Ideally, aerosols
that are inherited from MAM should not need to be defined as a
constituent. For instance, BCPI is inherited from bc_a* whereas
NIT is not included and needs to be defined as a constituent (in
order to be advected)
(4) Establish mapping between MAM4 and GEOS-Chem aerosols. Currently,
POM and SOA are not mapped. More work is needed here to figure out
which GEOS-Chem aerosols should be used to map those.
(5) Reverse mapping (aka from GEOS-Chem back to MAM) is not established
yet.
(6) Clip QI and QL to 1.0E-05 as low values (I have found values as low
as 1.0E-141) can make GEOS-Chem blow up in sulfate_mod.
(7) Add empty m_spc_id.F90, required by MAM4
(8) In mo_chem_utils, replace tracerNames by tracname. This is required
as MAM aerosols are not in tracerNames (which only includes
GEOS-Chem species). Add get_inv_ndx. I believe that this change
temporarily breaks dry deposition as performed by MOZART. More
investigation is needed here.
(9) Add subroutine in mo_drydep to load in land types which is required
for MAM4 to perform its own dry deposition
(10) Add MAM4 aerosols to solsym and define inv_lst (list of fixed
species)
----
TODOs:
(1) Establish reverse mappings (GEOS-Chem -> MAM4)
(2) Check MOZART's dry deposition routines.
(3) As of right now, MAM4 performs dry deposition. Would it be possible
to let GEOS-Chem perform dry deposition of aerosols?
(4) What to do regarding pure GEOS-Chem aerosols (e.g. NIT)?
Chore: Fix indentation + capitalization
Feat: Add option to get land types from HEMCO
Fix: Aerosol mapping requires more indices in MMR_Beg.
Remove custom emissions
Feat: Add emissions to CESM-GC
Fix: Prevent emissions from adding up in CESM-GC. Reset cam_in%cflx
Feat: Modify aero_model.F90 to let GEOS-Chem handle its own aerosols
Fix: Resolve circular dependency
Feat: Rename HCO_surf_salinity to HCO_salinity
(1) The physics buffer does not allow to store strings as long as
`HCO_surf_salinity` and would, for instance, store
`HCO_surf_salinit`. To avoid confusion, we rename it to
`HCO_salinity`, same for `HCO_iodide`.
Feat: Allow CESM-GC to output dry deposition velocity used by GEOS-Chem
(1) Add addfld and outfld statements for each dry deposition species,
using State_Chm%DryDepVel
(2) Fix to let chemistry.F90 when LANDTYPE_HEMCO is 1.
Feat: Uncomment call to DO_MIXING to allow for dry deposition
Feat: Change IC condition file
(1) Renamed some species into their GEOS-Chem equivalent. This new IC
file is a mere copy of the default file, with some species renamed
Fix: Replace species number with `gas_pcnst`
Feat: Reindexed GEOS-Chem species: tracers, MAM aerosols, SL species
(1) This reindexing is necessary as MAM requires that there is a linear
mapping (constant offset) between solsym and constituents.
(2) adv_mass is now properly defined in mo_sim_dat, using GEOS-Chem
values for all species, except MAM aerosols.
Feat: Add runtime option to using GEOS-Chem wet deposition
Feat: Add files to allow for NEU wet deposition scheme
(1) Add mo_neu_wetdep (copied from MOZART)
(2) Add additional files (mo_mean_mass, mo_setinv, gas_wetdep_opts)
(3) Add new field in mo_neu_wetdep (WDRATE), corresponding to the wet
removal rate in kg/s
Feat: Add NEU WD routines + MAM gas-aerosol exchange
( 1) Added NEU wet deposition routines. Option to choose between NEU and
GEOS-Chem wet deposition scheme is available at runtime. See commit
#a8d642c
( 2) Added diagnostic fields for wet deposition. These match the names
of the same quantities in MOZART
( 3) Added MAM gas-aerosol exchange
( 4) Rename field DDVel and SurfFlux into DepVel and DepFlux. Might need
to change those in the future to match those in MOZART
( 5) Established MAM4 aerosol to GEOS-Chem species mapping based on
discussion with Louisa Emmons
( 6) Added inverse mapping map2GCinv hat maps tracers onto constituent.
This is now used in chem_emissions.
( 7) Added map2chm which maps solsym onto GEOS-Chem species and
constituents
( 8) Remove special handlings when defining constituents. Variable names
are now changed in the IC file.
( 9) Compute CSZAmid field
(10) Fix bug where qH2O was flipped vertically
Feat: Get UVALBEDO from HEMCO
*CAM only defines albedo during daytime. However, UVALBEDO is only used
for photolysis, which should be fine.
Feat: Define MaxTrop/StratLev from grid + Add Set_H2O_Trac
Feat: Add OH and JRates diagnostics.
Feat: Get H2O mmr from specific humidity
(1) GEOS-Chem's water mass mixing ratio is derived from CAM's specific
humidity
(2) Additionally, the JRates diagnostics are only computed if they are
an output field
Chore: Remove unnecessary comment
Fix: Unit check failed because 'kg/ kg dry' /= 'kg/kg dry'
Feat: Remove special handlings as we now use GEOS-Chem IC
(1) Previously GEOS-Chem species were modified to account for the
species in the CAM restart file (e.g. HNO2 vs HONO). Now, we just
use GEOS-Chem initial conditions that have been regridded to
~0.9x1.25
Feat: Add option to pass H2O tendency to Q + change some addfld
Feat: Set State_Met%OMEGA equal to state%omega
Feat: Allow CESM-GC to compute overhead ozone from State_Chm%Species
Feat: Allow CESM-GC runs to be restartable
Feat: Implement 3-D emissions.
(1) Surface emissions (layer PVER) are passed to cam_in%cflx while the
non-surface emissions are added directly to the chemical tendencies
(2) Dry deposition fluxes are now passed to cam_in%cflx such that:
cam_in%cflx = eflx - dflx
(3) Remove call to DO_MIXING as this is now handled by CAM.
Feat: Replace tracerNames with solsym in chem_implements_cnst
Feat: Changes required by GEOS-Chem 13.0.0
Feat: Move compile time flags to run time flags for DD velocities
Feat: Read OMOC from HEMCO and store in State_Chm
Feat: Move all GEOS-Chem related diagnostics to cesmgc_diag_mod.F90
Feat: Add missing initialization of ThisLoc and ErrMsg
Feat: Add option to output State_Met in cesmgc_diag_mod.F90
Feat: Update GEOS-Chem branch in Externals_CAM.cfg to be `CESM`
Feat: Replace pp_geoschem with geoschem
Feat: Reset MAM-inherited aerosols to 0 before mapping
(1) Resetting MAM-inherited aerosols in State_Chm%Species allows these
aerosols to not accumulate over time. Otherwise, we would have
for instance:
BCPI = BCPI + MAM4,
which would accumulate overtime if BCPI was not reset
(2) Lowered the threshold on QI and QL to 1.0E-10 rather than 1.0E-05
Feat: Add MAM aerosols to cesmgc_diag_mod
Feat: Add lightning emissions
Feat: Add MEGAN emissions
Feat: Symbolic link to mozart/mo_lightning
Feat: Add symbolic link to MOZART files, rather than copy
Feat: Add lightning, MEGAN, aerosol and fire emissions
Feat: Remote WDRATE_* from CAM history fields
Fix: Molar weight pFe
Fix: Add to_upper to tracerNames, required since 'pFe' /= 'PFE'
Chore: Try lower and uppercase tracernames when getting data from pbuf
Fix: Handle cases where ncol /= pcols
Chore: Add note explaining why DQRLSAN needs to be zero in top layer
Feat: Pass GEOS-Chem aerosol emissions to MAM tendencies
Fix: Fix typo SO4S vs SOAS
Feat: Enforce lq('Q') to be true if passing H2O tendencies:
(1) lq(cQ) = .True. if applyQTend is True
(2) iFirstCnst is now a variable in chem_mods
(3) Reset cam_in%cflx for all species (including MAM aerosols)
Feat: Only diagnose wet deposition rates of soluble species
Feat: Skip emissions on first time step before HEMCO fills in data
Feat: Add chem_is-like function in mo_chm_utls
Fix: Fix typo
Feat: Add or rename some output fields:
(1) Add option to save out chemical tendencies (kg/kg/s or kg/s)
(2) Rename output fluxes to match CAM-Chem
Feat: Add _CLFX and other CAM-Chem like diagnostics to CESM-GC
Feat: Add new GC compsets that mimic CAM-Chem compsets:
(1) New compsets
(2) Enforce NTHRDS_ATM to be 1 when running with GEOS-Chem
Feat: Add new use_cases XML entries for newly added GC compsets
Feat: Turn on rad_prog_ozone for GEOS-Chem chemistry
Feat: Implement CAM-Chem like diagnostics for CESM-GC:
(1) Rename diagnostics to match CAM-Chem's
(2) Only perform diagnostics computations if field is an output.
Use hist_fld_active whenever a call to outfld is performed.
Feat: Make sure that GC's SOAGX species is not picked up by MAM
Fix: Remove debug statement in cesmgc_diag_mod
Feat: Add mmr tendencies for MAM aerosols from chemistry
Feat: Replace DO loops with array element-wise operations
Feat: Set NTHRDS_*=1 when using a GEOS-Chem compset
Feat: Make SDYN compset with GEOS-Chem have 56 levs
Feat: Pass chemical tendencies to MAM aerosols:
(1) Changes in aerosol concentrations due to GEOS-Chem processing is
now passed to chemical tendencies for MAM aerosols
(2) Wet deposition of MAM-inherited aerosols is not performed in
GEOS-Chem. To do so, we define a new logical `WD_ExternalDep` in
SpcInfo
Feat: Remove mass-weighted OH concentration diagnostics
Feat: Add CO2 as constituent
Feat: Compute CO2 chemical tendencies:
(1) GEOS-Chem overwrites CO2 concentrations at every time step. We thus
set State_Chm%Species(:,:,:,iCO2) = 0.0e+00 before chemistry and
compute chemical tendencies based on how much CO2 has been produced.
(2) Cleanup
Feat: Apply CAM-Chem surface boundary conditions for long-lived species
Feat: Remove hardwired path to GEOS-Chem CHEM_INPUTS directory
Feat: Remove hard-wired paths for GEOS-Chem inputs:
(1) All input files are now (one-time) copied from geoschem_src/run/CESM
to Buildconf/camconf. Then to the run folder every time builnml is
called
Feat: Read from input.geos
Feat: Read input.geos rather than hard-wiring input options
Feat: Add check to make sure that solsym is following list of GC tracer
Chore: Clean up in short_lived_species
Fix: Fix wrong reference MMR
Chore: Cleanup, remove unused MWRatio and longNames
Feat: Update .exclude to exclude gosat and tccon from GEOS-Chem folder
Feat: Get strat_chem data from HEMCO
Feat: Add timers around DO_CHEMISTRY + Fix diagnostic in WetDep
Feat: Remove PSO4 diagnostic (write statement)
Fix: Fix diagnostics of emissions
Feat: Remove option to let GEOS-Chem perform wet scavenging.
(1) The only option to perform convective scavenging in CESM-GC is
currently to rely on the NEU scheme, which handles large-scale
precipitation and convective scavening. Since the variables
required by the GEOS-Chem convective routines cannot be extracted
easily, we rely on the NEU scheme to perform washout due to both
LS precipitation and convective scavenging for gases AND aerosols.
(2) A next commit will follow to specify Henry coefficients of aerosols.
The best option is to probably set something similar as HNO3
Feat: Make non-MAM GC aerosols "gas-like" species for wet&dry dep
(1) Move all GC aerosols from aer_drydep_list to drydep_list and from
aer_wetdep_list to gas_wetdep_list (see previous commits too)
(2) This allows to remove the 'GC_AER_' terminology for GC aerosols
(3) Aerosol emission fluxes (e.g. BCPI) are now passed directly to
MAM (e.g. flux to bc_a4). This allows for the removal of some
interfacing code in cesmgc_emissions_mod.F90
(4) Fix diagnostic naming issues (e.g. replaced WD_HBR with WD_HBr)
(5) Remove extra bit of code in cesmgc_diag_mod dealing with wet dep
in GEOS-Chem, which had been removed in previous commits
(6) In mo_neu_wetdep.F90, make all GC aerosols be removed like HNO3
(7) Revert previous changes in modal_aero that used to deal with
GC aerosols in aer_drydep_list
Signed-off-by: Thibaud Fritz <fritzt@mit.edu>
2021-12-07 13:10:05 -07009a9ead503679507c872b20ce2aa5665c8ea6c974Squashed 60+ commits from Thibaud Fritzeditsrc/chemistry/mozart/mo_chem_utls.F90addsrc/chemistry/geoschem/fire_emissions.F90deletesrc/chemistry/aerosol/drydep_mod.F90addsrc/chemistry/geoschem/mo_apex.F90addsrc/chemistry/aerosol/aer_drydep_mod.F90addbld/namelist_files/use_cases/hist_geoschem.xmleditExternals_CAM.cfgaddsrc/chemistry/geoschem/charge_neutrality.F90editcime_config/config_compsets.xmldeletesrc/chemistry/pp_geoschem/mo_gas_phase_chemdr.F90addsrc/chemistry/geoschem/gas_wetdep_opts.F90deletesrc/chemistry/pp_geoschem/mo_chem_utls.F90editbld/namelist_files/namelist_definition.xmladdsrc/chemistry/geoschem/mo_setinv.F90addsrc/chemistry/geoschem/chemistry.F90deletesrc/chemistry/pp_geoschem/chemistry.F90addsrc/chemistry/geoschem/mo_drydep.F90addsrc/chemistry/geoschem/mo_ghg_chem.F90addsrc/chemistry/geoschem/rate_diags.F90addsrc/chemistry/geoschem/tracer_cnst.F90addsrc/chemistry/geoschem/chem_mods.F90addsrc/chemistry/geoschem/short_lived_species.F90addsrc/chemistry/geoschem/mo_chem_utls.F90addsrc/chemistry/geoschem/mo_tracname.F90deletesrc/chemistry/pp_geoschem/mo_drydep.F90deletesrc/chemistry/pp_geoschem/upper_bc.F90editbld/build-namelistaddsrc/chemistry/geoschem/.excludeaddsrc/chemistry/geoschem/upper_bc.F90addsrc/chemistry/geoschem/getLandTypes.F90deletesrc/chemistry/pp_geoschem/epp_ionization.F90deletesrc/chemistry/pp_geoschem/mo_lightning.F90addsrc/chemistry/geoschem/cesmgc_diag_mod.F90deletesrc/chemistry/pp_geoschem/chem_prod_loss_diags.F90addsrc/chemistry/geoschem/epp_ionization.F90addbld/namelist_files/use_cases/sd_geoschem.xmladdsrc/chemistry/geoschem/mo_mean_mass.F90deletesrc/chemistry/pp_geoschem/rate_diags.F90deletesrc/chemistry/pp_geoschem/mo_tracname.F90deletesrc/chemistry/pp_geoschem/clybry_fam.F90deletesrc/chemistry/pp_geoschem/getLandTypes.F90deletesrc/chemistry/pp_geoschem/gc_emissions.F90editcime_config/config_component.xmldeletesrc/chemistry/pp_geoschem/chem_mods.F90addsrc/chemistry/geoschem/tracer_srcs.F90addsrc/chemistry/geoschem/clybry_fam.F90addsrc/chemistry/geoschem/cesmgc_emissions_mod.F90addsrc/chemistry/geoschem/chem_prod_loss_diags.F90deletesrc/chemistry/pp_geoschem/aero_model.F90addsrc/chemistry/geoschem/mo_sim_dat.F90editbld/namelist_files/use_cases/geoschem.xmleditbld/perl5lib/Build/ChemNamelist.pmdeletesrc/chemistry/pp_geoschem/mo_apex.F90editsrc/chemistry/modal_aero/aero_model.F90deletesrc/chemistry/pp_geoschem/.excludedeletesrc/chemistry/pp_geoschem/charge_neutrality.F90editbld/configureeditcime_config/buildnmladdsrc/chemistry/geoschem/mo_neu_wetdep.F90editcime_config/config_pes.xmladdsrc/chemistry/geoschem/m_spc_id.F90deletesrc/chemistry/pp_geoschem/short_lived_species.F90editbld/config_files/definition.xmldeletesrc/chemistry/pp_geoschem/mo_sim_dat.F90addsrc/chemistry/geoschem/mo_lightning.F90editsrc/chemistry/bulk_aero/aero_model.F90addsrc/chemistry/geoschem/mo_gas_phase_chemdr.F90editsrc/chemistry/modal_aero/modal_aero_data.F90
- src/chemistry/geoschem/chemistry.F906c3299f1a38262c344ca57fd9d7265ebb5ea44a11638907903000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFeat: Write ZPJ values for RXN_NO2, RXN_O3_1/2a into HCO_IN_JNO2, HCO_IN_JOH for HEMCO ParaNOx extension.
Fix: fldname_ns fix to FIELDNAME
2021-12-07 13:11:43 -07006c3299f1a38262c344ca57fd9d7265ebb5ea44a1Feat: Write ZPJ values for RXN_NO2, RXN_O3_1/2a into HCO_IN_JNO2, HCO_IN_JOH for HEMCO ParaNOx extension.editsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F90bld/build-namelistbld/namelist_files/use_cases/geoschem.xmlcime_config/config_component.xmlbld/namelist_files/use_cases/sd_geoschem.xmlsrc/chemistry/geoschem/mo_sim_dat.F90src/chemistry/geoschem/mo_neu_wetdep.F90bld/namelist_files/use_cases/hist_geoschem.xmledf905677eb53ad73986d673f04ee3e7bec6dc1b1638907904000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 4 commits from Thibaud Fritz
Feat: Uniformize calls to HEMCO
Fix: Replace SO4S with SO4s
Fix: Fix XML file name
Feat: Capitalize all GC constituents name, and other updates:
(1) This is required because boundary conditions are stored with
capitalized name. I would rather follow the same terminology
as MOZART (with capitalized constituents) rather than modify
the interface with flbc.
(2) Update geoschem.xml to match FC2000climo compset
(3) Fix bug where lght_no_prod_factor was not applied in CESM-GC
(4) Set ext_frc_specifier to '' for CESM-GC compsets as we rely on
HEMCO
2021-12-07 13:11:44 -0700edf905677eb53ad73986d673f04ee3e7bec6dc1bSquashed 4 commits from Thibaud Fritzeditcime_config/config_component.xmleditsrc/chemistry/geoschem/mo_sim_dat.F90editbld/build-namelisteditbld/namelist_files/use_cases/sd_geoschem.xmleditsrc/chemistry/geoschem/mo_neu_wetdep.F90editbld/namelist_files/use_cases/hist_geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/use_cases/geoschem.xml
- src/chemistry/geoschem/chemistry.F907afe235661871151e7713464a739ac2340c6849a1638907904000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFeat: Now retrieve fields from HEMCO using 2-D pbuf fields
2021-12-07 13:11:44 -07007afe235661871151e7713464a739ac2340c6849aFeat: Now retrieve fields from HEMCO using 2-D pbuf fieldseditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/mo_tracname.F90src/chemistry/geoschem/chemistry.F90bld/namelist_files/use_cases/geoschem.xmlbld/namelist_files/namelist_defaults_cam.xmlsrc/chemistry/modal_aero/modal_aero_gasaerexch.F90bld/configuresrc/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/geoschem/mo_neu_wetdep.F90de05dff245a7805ef7167839c963d0037b41a58e1638907904000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 10 commits from Thibaud Fritz
Fix: Pass surface J-Rates to HEMCO for PARANOX
Fix: Update MMR_Beg for MAM aerosols:
(1) This fix avoids a slow, but steady build up of some MAM aerosols
Fix: Make sure GEOS-Chem (aerosol phase) MSA is not picked up by MAM
Feat: Diagnose constituents as mol/mol apart from MAM aerosols
Feat: Update namelist_defaults s.t. geoschem mimics trop_strat_mam4vbs
Feat: Update geoschem.xml to mimic history_* XML variables
Feat: Add history_* options to save out fields in cesmgc_diag_mod
Feat: Don't make solsym fixed size, but rather of size gas_pcnst
Feat: Change nadv_chem from 240 to 238
Feat: Add more history_* options to save out fields (mimic CAM-Chem)
Signed-off-by: Thibaud Fritz <fritzt@mit.edu>
2021-12-07 13:11:44 -0700de05dff245a7805ef7167839c963d0037b41a58eSquashed 10 commits from Thibaud Fritzeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/mo_neu_wetdep.F90editsrc/chemistry/geoschem/cesmgc_diag_mod.F90editsrc/chemistry/geoschem/mo_tracname.F90editbld/namelist_files/use_cases/geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/modal_aero/modal_aero_gasaerexch.F90editbld/configureeditsrc/chemistry/geoschem/cesmgc_emissions_mod.F90
- src/chemistry/geoschem/cesmgc_emissions_mod.F902343800365dbd81c3435095d9bdf73a699acabec1638907904000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFeat: Retrieve ParaNOx deposition fluxes from HEMCO
2021-12-07 13:11:44 -07002343800365dbd81c3435095d9bdf73a699acabecFeat: Retrieve ParaNOx deposition fluxes from HEMCOeditsrc/chemistry/geoschem/cesmgc_emissions_mod.F90
- src/chemistry/geoschem/chemistry.F90bld/build-namelist.gitignorecime_config/config_component.xmlbld/configuresrc/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90src/chemistry/geoschem/chem_mods.F90bld/namelist_files/use_cases/sd_geoschem.xmlsrc/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/geoschem/.excludebld/namelist_files/use_cases/2000_geoschem.xmlsrc/chemistry/geoschem/mo_neu_wetdep.F90bld/namelist_files/use_cases/hist_geoschem.xmlbld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/geoschem.xmlsrc/chemistry/geoschem/mo_drydep.F90src/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90src/chemistry/pp_trop_strat_mam4_vbsext/mo_sim_dat.F90src/chemistry/geoschem/mo_sim_dat.F90src/chemistry/pp_trop_strat_mam4_vbs/mo_sim_dat.F90b1d572e117d2380060cd4d49393d16e3a9bbb7071638907905000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSquashed 18 commits from Thibaud Fritz
Feat: Revert mo_drydep to MOZART's version + Update chemistry.F90
(1) Note that most of the mo_drydep routines are unused. We only need
to load in landtypes for MAM
Feat: Add aerosol number emissions in CESM-GC
(1) Emission diameters are taken from:
Emmons, Louisa K., et al. "The chemistry mechanism in the
Community Earth System Model version 2 (CESM2)."
Journal of Advances in Modeling Earth Systems 12.4 (2020).
Feat: Lump GEOS-Chem SO4 with so4_a* and H2SO4
Fix: Remove hard-wired number emissions as this has been moved to HEMCO
Feat: Update .xml files with GEOS-Chem chemistry (MEGAN)
Feat: Add MEGAN emissions with GEOS-Chem species
Fix: Update IF condition for SRF diagnostics
Feat: Add hemco_nl in build-namelist
Feat: Rename geoschem.xml to 2000_geoscheml.xml (FC2000climo_GC)
Feat: Add 2010_geoscheml.xml (FC2010climo_GC)
Feat: Update config_component to reflect recent changes to xml files
Feat: Add SOA mapping between MAM and GEOS-Chem complex SOA option
(1) Add mapping
(2) Extend number of constituents
Feat: Add AEIC organic species to external forcings list
Feat: Add GEOS-Chem surface boundary conditions
Feat: Update .gitignore to exclude GEOS-Chem source code
Fix: Fix for sulfur mapping between CESM2 and GEOS-Chem
(1) SO4_gasRatio and binRatio are in mol/mol, not kg/kg
Feat: Update .exclude for GEOS-Chem 13.1
Fix: Update in-cloud opticaldepth with cloud fractions
2021-12-07 13:11:45 -0700b1d572e117d2380060cd4d49393d16e3a9bbb707Squashed 18 commits from Thibaud Fritzeditsrc/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90editbld/build-namelisteditbld/namelist_files/use_cases/hist_geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90edit.gitignoreeditsrc/chemistry/geoschem/cesmgc_emissions_mod.F90addbld/namelist_files/use_cases/2000_geoschem.xmleditsrc/chemistry/geoschem/mo_neu_wetdep.F90editsrc/chemistry/pp_trop_strat_mam4_vbs/mo_sim_dat.F90editbld/namelist_files/use_cases/sd_geoschem.xmleditsrc/chemistry/geoschem/mo_drydep.F90editsrc/chemistry/pp_trop_strat_mam4_vbsext/mo_sim_dat.F90editsrc/chemistry/geoschem/cesmgc_diag_mod.F90addbld/namelist_files/use_cases/2010_geoschem.xmleditcime_config/config_component.xmleditbld/configuredeletebld/namelist_files/use_cases/geoschem.xmleditsrc/chemistry/geoschem/.excludeeditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/mo_sim_dat.F90editsrc/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90
- bld/namelist_files/use_cases/2000_geoschem.xmlsrc/chemistry/geoschem/chemistry.F90d8f37097fc799efe201d488dff14d0143601850d1638907905000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix: correct improper merge conflict handling introduced during rebase
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2021-12-07 13:11:45 -0700d8f37097fc799efe201d488dff14d0143601850dFix: correct improper merge conflict handling introduced during rebaseeditbld/namelist_files/use_cases/2000_geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/modal_aero/sox_cldaero_mod.F9062bb87d1c804ccf7bbca9cdd1104d679e48e06021639079081000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFeat: Return in sox_cldaero_mod if running with GEOS-Chem
This prevents the code from double counting in-cloud sulfur oxidation
Signed-off-by: Thibaud Fritz <fritzt@mit.edu>
2021-12-09 12:44:41 -070062bb87d1c804ccf7bbca9cdd1104d679e48e0602Feat: Return in sox_cldaero_mod if running with GEOS-Chemeditsrc/chemistry/modal_aero/sox_cldaero_mod.F90
- src/chemistry/geoschem/gas_wetdep_opts.F90src/chemistry/pp_trop_strat_mam4_vbsext/mo_sim_dat.F90src/chemistry/pp_trop_strat_mam4_vbs/mo_sim_dat.F90515ad9a80c75c863643ad0ca211ae287287f3ebb1639405321000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix: correct wrong indexes introduced by manual revert; rm GC wetscav
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2021-12-13 07:22:01 -0700515ad9a80c75c863643ad0ca211ae287287f3ebbFix: correct wrong indexes introduced by manual revert; rm GC wetscaveditsrc/chemistry/geoschem/gas_wetdep_opts.F90editsrc/chemistry/pp_trop_strat_mam4_vbs/mo_sim_dat.F90editsrc/chemistry/pp_trop_strat_mam4_vbsext/mo_sim_dat.F90
- src/dynamics/mpas/driver/cam_mpas_subdriver.F90e47052ad2e178fdd9712e4a397b4a4dcfad609421642025756000http://carson.math.uwm.edu/jenkins/user/skamarocskamarocskamaroc@ucar.eduAdded coefficient arrays used to compute the horizontal gradients of
cell-centered variables to the input and restart streams for the
MPAS dynamical core.
2022-01-12 15:15:56 -0700e47052ad2e178fdd9712e4a397b4a4dcfad60942Added coefficient arrays used to compute the horizontal gradients ofeditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90
- src/dynamics/mpas/dyn_comp.F9028bc86407223c6b9b4516b2c893ea83c26b2c4b81642025756000http://carson.math.uwm.edu/jenkins/user/skamarocskamarocskamaroc@ucar.eduAdded MPAS mesh information and coefficients for computing
the frontogenesis function to the dynamics export state
for use in d_p_coupling (where the frontogenesis function
and angle are computed).
2022-01-12 15:15:56 -070028bc86407223c6b9b4516b2c893ea83c26b2c4b8Added MPAS mesh information and coefficients for computingeditsrc/dynamics/mpas/dyn_comp.F90
- src/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/dp_coupling.F904eb8978d6d7b0e98ed02e928a8dc96306bb6d0a41642025756000http://carson.math.uwm.edu/jenkins/user/skamarocskamarocskamaroc@ucar.eduAdded the option to compute the frontogenesis function and the
angle of del(theta) needed by the gravity-wave drag parameterization.
2022-01-12 15:15:56 -07004eb8978d6d7b0e98ed02e928a8dc96306bb6d0a4Added the option to compute the frontogenesis function and theeditsrc/dynamics/mpas/dyn_comp.F90editsrc/dynamics/mpas/dp_coupling.F90
- src/control/camsrfexch.F90bld/perl5lib/Build/ChemNamelist.pm71fb83adfdb9be465f84a3b9661281a2f2e015c71644249498000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduEnable compilation in CESM 2.3 for non-GEOS-Chem case
This commit includes:
1. Syntax bug fixes in perl file ChemNamelist.pm
2. Setting perl smartmatch to experimental in ChemNamelist.pm to avoid
perl version dependent build error for use of '~~' (checks if item
is in array)
3. Remove CAM imports lwtgcell, pwtgcell, and lai that are used for
GEOS-Chem dry deposition velocity calculation. In a future update
GEOS-Chem will no longer calculate dry deposition velocity when run
in CESM so these imports are not needed.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-02-07 08:58:18 -070071fb83adfdb9be465f84a3b9661281a2f2e015c7Enable compilation in CESM 2.3 for non-GEOS-Chem caseeditbld/perl5lib/Build/ChemNamelist.pmeditsrc/control/camsrfexch.F90
- cime_config/buildcppbld/config_files/definition.xml9f80b02058fb11a4ddbd5379dc66a39909a512781644522627000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduBuild fixes for CESM-GC within CESM: non-GEOS-Chem cases
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-02-10 12:50:27 -07009f80b02058fb11a4ddbd5379dc66a39909a51278Build fixes for CESM-GC within CESM: non-GEOS-Chem caseseditcime_config/buildcppeditbld/config_files/definition.xml
- src/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/geoschem/getLandTypes.F90src/chemistry/geoschem/chemistry.F9060e537a2ba8e358f7c4c7c78f73a2132528439de1645034111000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate GEOS-Chem interface code for compatibility with CESM 2.3
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-02-16 10:55:11 -070060e537a2ba8e358f7c4c7c78f73a2132528439deUpdate GEOS-Chem interface code for compatibility with CESM 2.3editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/getLandTypes.F90editsrc/chemistry/geoschem/cesmgc_emissions_mod.F90
- bld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmla6c7cc649535968fbeee573d23e055c25d0918d21646665928000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix bug in J-value diagnostic names for O3O1D
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-03-07 08:12:08 -0700a6c7cc649535968fbeee573d23e055c25d0918d2Fix bug in J-value diagnostic names for O3O1Deditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xml
- cime_config/config_compsets.xml035f27cecca38c1e46487f2821b6dae55dd4b6cc1646671082000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove remaining references to compset FSPCAMM_GC
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-03-07 09:38:02 -0700035f27cecca38c1e46487f2821b6dae55dd4b6ccRemove remaining references to compset FSPCAMM_GCeditcime_config/config_compsets.xml
- src/chemistry/geoschem/chemistry.F90a002aff2955bfd55f7bad9e5dcd2ddcbc87b0f3d1648832465000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduGEOS-Chem driver routine updates for compatibility with GEOS-Chem 13.3.4
2022-04-01 11:01:05 -0600a002aff2955bfd55f7bad9e5dcd2ddcbc87b0f3dGEOS-Chem driver routine updates for compatibility with GEOS-Chem 13.3.4editsrc/chemistry/geoschem/chemistry.F90
- bld/configuresrc/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/mo_sim_dat.F906fd974497839ffee00064929dbbc0f06f6e2727d1648832642000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduModifications for new GEOS-Chem species (HMS) in version 13.3
- Added HMS to solsym array and increased length by 1
- Add HMS molecular wt to adv_mass array and increased length by 1
- Increased parameter nTracersMax by 1
- Increased bld/configure variables chem_nadv by 1
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-04-01 11:04:02 -06006fd974497839ffee00064929dbbc0f06f6e2727dModifications for new GEOS-Chem species (HMS) in version 13.3editbld/configureeditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/mo_sim_dat.F90
- Externals_CAM.cfg596c261d3375aa6d939475787462cff9bbc2c3901648832648000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse ESCOMP/HEMCO_CESM rather than H. Lin's fork
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-04-01 11:04:08 -0600596c261d3375aa6d939475787462cff9bbc2c390Use ESCOMP/HEMCO_CESM rather than H. Lin's forkeditExternals_CAM.cfg
- Externals_CAM.cfg425bb4996dd430f45343ced4222220509ac96f741648832695000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem branch name to diverge from version used in CESM-GC 2.1
CESM-GC using CESM 2.1 used GEOS-Chem 13.1. The GEOS-Chem version used in
development for CESM 2.3 is 13.3.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-04-01 11:04:55 -0600425bb4996dd430f45343ced4222220509ac96f74Change GEOS-Chem branch name to diverge from version used in CESM-GC 2.1editExternals_CAM.cfg
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlbld/namelist_files/use_cases/geoschem_baro_moist.xmleb70ed3a4e2e9b4deab0f4bbfc5beb33487269a21648832705000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSet default namelist values for cam_physics_mesh in geos-chem use cases
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-04-01 11:05:05 -0600eb70ed3a4e2e9b4deab0f4bbfc5beb33487269a2Set default namelist values for cam_physics_mesh in geos-chem use caseseditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/geoschem_baro_moist.xmleditbld/namelist_files/use_cases/2010_geoschem.xml
- src/chemistry/geoschem/chem_mods.F901778e5d0cb4b7f9b1d317f4396be6db1daae9dec1651091418000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduBug fix: increase module parameter gas_pcnst by 1 to include HMS
This is necessary after upgrading the GEOS-Chem version since HMS is
a newly added advected gas species.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-04-27 14:30:18 -06001778e5d0cb4b7f9b1d317f4396be6db1daae9decBug fix: increase module parameter gas_pcnst by 1 to include HMSeditsrc/chemistry/geoschem/chem_mods.F90
- src/physics/cam/physpkg.F90src/chemistry/geoschem/chemistry.F90bld/namelist_files/use_cases/hist_geoschem.xml0a782b962321c737660d07dec430207ff297fc411656093741000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduModifications to turn off dry deposition and dependencies on CLM for land
2022-06-24 12:02:21 -06000a782b962321c737660d07dec430207ff297fc41Modifications to turn off dry deposition and dependencies on CLM for landeditbld/namelist_files/use_cases/hist_geoschem.xmleditsrc/physics/cam/physpkg.F90editsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/mo_neu_wetdep.F9097f4a30fac1cb4933c40016d5d81ae0e18b70bb31656093771000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduKludge to get by missing Henry's Law coeffs for certain species
2022-06-24 12:02:51 -060097f4a30fac1cb4933c40016d5d81ae0e18b70bb3Kludge to get by missing Henry's Law coeffs for certain specieseditsrc/chemistry/geoschem/mo_neu_wetdep.F90
- cime_config/config_component.xmlbld/namelist_files/use_cases/hist_geoschem.xmle9b8b27b8d7eec853f9aae530415636ff53e3c801656525356000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduConfigure compsets that use GEOS-Chem to also use HEMCO
2022-06-29 11:55:56 -0600e9b8b27b8d7eec853f9aae530415636ff53e3c80Configure compsets that use GEOS-Chem to also use HEMCOeditcime_config/config_component.xmleditbld/namelist_files/use_cases/hist_geoschem.xml
- src/physics/cam/physpkg.F90src/cpl/nuopc/atm_comp_nuopc.F90ae59e64449a8797cf65a77f2b29908e7034055ed1656529605000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdded high-level log prints
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-06-29 13:06:45 -0600ae59e64449a8797cf65a77f2b29908e7034055edAdded high-level log printseditsrc/physics/cam/physpkg.F90editsrc/cpl/nuopc/atm_comp_nuopc.F90
- cime_config/config_compsets.xmlaae00e757b2a3bc00323d6e5b76b970735714b3d1656619865000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse same RUN_STARTDATE for compset FCHIST_GC as used in FCHIST
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-06-30 14:11:05 -0600aae00e757b2a3bc00323d6e5b76b970735714b3dUse same RUN_STARTDATE for compset FCHIST_GC as used in FCHISTeditcime_config/config_compsets.xml
- bld/namelist_files/use_cases/hist_geoschem.xmle27c049c54db0d6833b5035eaa3b87d00e2e77e31656622246000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRevert hist_geoschem.xml to original; will adjust in user_nl_cam
2022-06-30 14:50:46 -0600e27c049c54db0d6833b5035eaa3b87d00e2e77e3Revert hist_geoschem.xml to original; will adjust in user_nl_cameditbld/namelist_files/use_cases/hist_geoschem.xml
- cime_config/config_component.xml87e351129955e146c631f3579ab045f5de94cf051656622258000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove compset that uses geoschem_mam3
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-06-30 14:50:58 -060087e351129955e146c631f3579ab045f5de94cf05Remove compset that uses geoschem_mam3editcime_config/config_component.xml
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xml19832a954840caaf924015c5b620faaad06555be1657811606000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduNo diff updates to GEOS-Chem use cases to document diffs with non-GC
Also deleted unused use case defined in geoschem_baro_moist.xml
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-07-14 09:13:26 -060019832a954840caaf924015c5b620faaad06555beNo diff updates to GEOS-Chem use cases to document diffs with non-GCeditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xml
- src/physics/carma/cam/carma_intr.F90src/physics/carma/models/dust/carma_model_mod.F902deed9efd91860ebe281706a802b06a7dd7391301658167097000http://carson.math.uwm.edu/jenkins/user/mlandermlandermlander@ucar.educommitting changes toward running caram_dust with SE Dycode
2022-07-18 11:58:17 -06002deed9efd91860ebe281706a802b06a7dd739130committing changes toward running caram_dust with SE Dycodeeditsrc/physics/carma/cam/carma_intr.F90editsrc/physics/carma/models/dust/carma_model_mod.F90
- bld/namelist_files/use_cases/2010_geoschem.xmlsrc/chemistry/geoschem/chemistry.F90bld/build-namelistbld/namelist_files/namelist_defaults_cam.xmlsrc/chemistry/geoschem/mo_chem_utls.F90bld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlcime_config/config_compsets.xmlbld/namelist_files/use_cases/geoschem_baro_moist.xmlbld/namelist_files/use_cases/hist_geoschem.xmle6dd893c9d28618cf8a208c24f65605b42d0fe9e1658354678000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduClean up GEOS-Chem compset namelists
-Move megan_specifier definition for GEOS-Chem in use_cases files to
bld/build-namelist given chem=geoschem
-Move cam_physics_mesh definitions used by HEMCO from use_cases files to
namelist_defaults_cam.xml
-Remove drydep_method, ext_frc_*, and srf_emis_* parameters from
GEOS-Chem use case files
-Delete namelist file (geoschem_baro_moist.xml) for unused GEOS-Chem
compset
-Set default RUN_STARTDATE for the GEOS-Chem climo compsets in
config_compsets.xml
-Remove ext_frc_* and srf_emis_* variables from geoschem/chemistry.F90
since not used
-Fix incorrect comment in mo_chem_utls.F90
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-07-20 16:04:38 -0600e6dd893c9d28618cf8a208c24f65605b42d0fe9eClean up GEOS-Chem compset namelistseditbld/build-namelisteditcime_config/config_compsets.xmleditsrc/chemistry/geoschem/mo_chem_utls.F90editbld/namelist_files/use_cases/sd_geoschem.xmldeletebld/namelist_files/use_cases/geoschem_baro_moist.xmleditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xml
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/hist_geoschem.xml849edd7eecfcdb8e31ef66c563b1f40e05eb4f641658422457000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduMove GEOS-Chem deposition lists to common file with namelist defaults
This update also slims down the dry deposition lists to not include
aerosols or unused species (new lists submitted by Haipeng Lin).
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-07-21 10:54:17 -0600849edd7eecfcdb8e31ef66c563b1f40e05eb4f64Move GEOS-Chem deposition lists to common file with namelist defaultseditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xml
- src/chemistry/geoschem/mo_neu_wetdep.F909ab1b89fa008c2954d30792ace3b95c9106bfb731659626070000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdates to Neu wet dep in GEOS-Chem for Henry's Law coeffs from netcdf
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-04 09:14:30 -06009ab1b89fa008c2954d30792ace3b95c9106bfb73Updates to Neu wet dep in GEOS-Chem for Henry's Law coeffs from netcdfeditsrc/chemistry/geoschem/mo_neu_wetdep.F90
- src/chemistry/geoschem/mo_neu_wetdep.F904fa1cf41517aad55d0e5438a7a051294ea08e6be1659626153000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate Neu wet dep debug prints in GEOS-Chem
Debug prints are now only done by the master processor. The debug logical
is still manually set in mo_neu_wetdep.F90. It is false by default.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-04 09:15:53 -06004fa1cf41517aad55d0e5438a7a051294ea08e6beUpdate Neu wet dep debug prints in GEOS-Chemeditsrc/chemistry/geoschem/mo_neu_wetdep.F90
- src/chemistry/geoschem/chemistry.F90cime_config/buildnmlbld/namelist_files/namelist_defaults_cam.xmlbld/configuresrc/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/geoschem/mo_sim_dat.F909fed226d09da69abec0d9183554a07d5738b05671659626544000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduPreliminary updates for GEOS-Chem 14.0
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-04 09:22:24 -06009fed226d09da69abec0d9183554a07d5738b0567Preliminary updates for GEOS-Chem 14.0editsrc/chemistry/geoschem/cesmgc_diag_mod.F90editsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/chemistry/geoschem/mo_sim_dat.F90editbld/configureeditcime_config/buildnmleditsrc/chemistry/geoschem/chem_mods.F90
- src/chemistry/geoschem/chemistry.F90e8c43b26ca71fa1c85ddfad908da28fba90733d01659626670000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd debug print option within GEOS-Chem chemistry.F90
Currently set to true by default.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-04 09:24:30 -0600e8c43b26ca71fa1c85ddfad908da28fba90733d0Add debug print option within GEOS-Chem chemistry.F90editsrc/chemistry/geoschem/chemistry.F90
- src/physics/carma/models/meteor_impact/carma_model_mod.F90src/physics/carma/cam/carma_intr.F90cime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_camsrc/physics/carma/cam/carma_constants_mod.F90src/physics/carma/cam/carma_getH2SO4.F90cime_config/testdefs/testmods_dirs/cam/carma_meteor_impact/user_nl_camcime_config/testdefs/testmods_dirs/cam/carma_dust/user_nl_camsrc/physics/carma/cam/carma_getH2O.F90bld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_camExternals_CAM.cfgsrc/physics/carma/models/sea_salt/carma_model_mod.F90src/physics/carma/cam/carma_getT.F90src/physics/carma/models/dust/carma_model_mod.F9043822634f7b15a9b9570289232d6d3b0d2bf895f1659650820000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educhanges for unstructured grids
modified: Externals_CAM.cfg
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: cime_config/testdefs/testmods_dirs/cam/carma_dust/user_nl_cam
modified: cime_config/testdefs/testmods_dirs/cam/carma_meteor_impact/user_nl_cam
modified: cime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_cam
modified: cime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_cam
modified: src/physics/cam/physpkg.F90
modified: src/physics/carma/cam/carma_constants_mod.F90
modified: src/physics/carma/cam/carma_getH2O.F90
modified: src/physics/carma/cam/carma_getH2SO4.F90
modified: src/physics/carma/cam/carma_getT.F90
modified: src/physics/carma/cam/carma_intr.F90
modified: src/physics/carma/models/cirrus/carma_model_mod.F90
modified: src/physics/carma/models/dust/carma_model_mod.F90
modified: src/physics/carma/models/meteor_impact/carma_model_mod.F90
modified: src/physics/carma/models/sea_salt/carma_model_mod.F90
2022-08-04 16:07:00 -060043822634f7b15a9b9570289232d6d3b0d2bf895fchanges for unstructured gridseditsrc/physics/carma/models/dust/carma_model_mod.F90editcime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_cameditbld/namelist_files/namelist_defaults_cam.xmleditcime_config/testdefs/testmods_dirs/cam/carma_meteor_impact/user_nl_cameditsrc/physics/carma/cam/carma_getT.F90editsrc/physics/carma/cam/carma_getH2SO4.F90editcime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_cameditExternals_CAM.cfgeditcime_config/testdefs/testmods_dirs/cam/carma_dust/user_nl_cameditsrc/physics/carma/cam/carma_intr.F90editsrc/physics/carma/cam/carma_getH2O.F90editsrc/physics/carma/models/meteor_impact/carma_model_mod.F90editsrc/physics/carma/cam/carma_constants_mod.F90editsrc/physics/carma/models/sea_salt/carma_model_mod.F90
- cime_config/testdefs/testlist_cam.xml919195a27557fa56301c531e6af21c47a3581f9d1659971363000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd izumi_nag carma tests
2022-08-08 09:09:23 -0600919195a27557fa56301c531e6af21c47a3581f9dadd izumi_nag carma testseditcime_config/testdefs/testlist_cam.xml
- bld/configuresrc/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/chemistry.F90src/chemistry/geoschem/mo_sim_dat.F9044c48db3d7638ce346fb4ce7840433e82d0c44731660067343000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFixes for using GEOS-Chem 14.0
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-09 11:49:03 -060044c48db3d7638ce346fb4ce7840433e82d0c4473Fixes for using GEOS-Chem 14.0editbld/configureeditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/mo_sim_dat.F90
- src/chemistry/geoschem/chemistry.F90bld/namelist_files/namelist_defaults_cam.xml5c153c177752f4f47ea23418fa8bbaf5cd0829b11660251262000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdates to get gas-phase dry deposition when using GEOS-Chem to run
Gas-phase dry deposition using GEOS-Chem is not yet validated.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-08-11 14:54:22 -06005c153c177752f4f47ea23418fa8bbaf5cd0829b1Updates to get gas-phase dry deposition when using GEOS-Chem to runeditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/namelist_defaults_cam.xml
- src/dynamics/mpas/driver/cam_mpas_subdriver.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandssrc/dynamics/mpas/dp_coupling.F90ca65b5feb79242b5139c40891aad03c85cabf1221660740979000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduread cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean up
modified: cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commands
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
2022-08-17 06:56:19 -0600ca65b5feb79242b5139c40891aad03c85cabf122read cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean upeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandseditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90
- cime_config/testdefs/testlist_cam.xmlb9e321d16f90e69c44002f3aa10a281ab80c4bea1660772089000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd cheyenne tests
2022-08-17 15:34:49 -0600b9e321d16f90e69c44002f3aa10a281ab80c4beaadd cheyenne testseditcime_config/testdefs/testlist_cam.xml
- cime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_camsrc/physics/carma/cam/carma_getH2SO4.F90src/physics/carma/cam/carma_getH2O.F90src/physics/carma/cam/carma_getT.F902ef2070a4d5057f4b2dcea5d4b7611c08b81a1ec1660838199000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduignore fixedinit issues with SE dycore; revert carma_get profile routines
modified: cime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_cam
modified: src/physics/carma/cam/carma_getH2O.F90
modified: src/physics/carma/cam/carma_getH2SO4.F90
modified: src/physics/carma/cam/carma_getT.F90
2022-08-18 09:56:39 -06002ef2070a4d5057f4b2dcea5d4b7611c08b81a1ecignore fixedinit issues with SE dycore; revert carma_get profile routineseditsrc/physics/carma/cam/carma_getH2O.F90editcime_config/testdefs/testmods_dirs/cam/carma_pmc/user_nl_cameditsrc/physics/carma/cam/carma_getT.F90editsrc/physics/carma/cam/carma_getH2SO4.F90
- Externals_CAM.cfgsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90src/dynamics/mpas/dyn_comp.F90cime_config/testdefs/testlist_cam.xmlcime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xml8cc55751fa18d7d76686295100c04990bd3ea7841660851298000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduTurn on frontogenesis GWs in WACCM-SC; add cheyenne tests
modified: Externals_CAM.cfg
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
modified: src/dynamics/mpas/dyn_comp.F90
2022-08-18 13:34:58 -06008cc55751fa18d7d76686295100c04990bd3ea784Turn on frontogenesis GWs in WACCM-SC; add cheyenne testseditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editsrc/dynamics/mpas/dyn_comp.F90editExternals_CAM.cfgeditcime_config/testdefs/testlist_cam.xmleditcime_config/config_pes.xmleditbld/namelist_files/namelist_defaults_cam.xml
- src/dynamics/mpas/dp_coupling.F90ce145c9061287616117b072afe643241052248751660880706000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix restarts by haloing tracers; append constants with _r8 kind
modified: src/dynamics/mpas/dp_coupling.F90
2022-08-18 21:45:06 -0600ce145c9061287616117b072afe64324105224875fix restarts by haloing tracers; append constants with _r8 kindeditsrc/dynamics/mpas/dp_coupling.F90
- src/dynamics/mpas/dyn_grid.F90src/dynamics/mpas/dp_coupling.F90src/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/driver/cam_mpas_subdriver.F90977dafe2b60b4b7497eb2a0f19a3b7e703beff681662050448000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edusome code clean up
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
modified: src/dynamics/mpas/dyn_comp.F90
modified: src/dynamics/mpas/dyn_grid.F90
2022-09-01 10:40:48 -0600977dafe2b60b4b7497eb2a0f19a3b7e703beff68some code clean upeditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/dyn_comp.F90editsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editsrc/dynamics/mpas/dyn_grid.F90
- src/chemistry/geoschem/.excludee565c302bcb875b737d41ea33084f28755797b831663100022000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange geoschem .exclude file to use relative paths to files
Previously file only contained filenames. This update should be used with
CIME updates submitted in:
ESMCI/cime#4180
ESMCI/cime#4302
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-13 14:13:42 -0600e565c302bcb875b737d41ea33084f28755797b83Change geoschem .exclude file to use relative paths to fileseditsrc/chemistry/geoschem/.exclude
- src/physics/cam/physpkg.F9003f75fdc3aeecaf12342e27972750c5c0003c0d41663100109000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduClean up new debug print code in physpkg.F90
Local debug option can be enabled in the source code to print messages
before and after chem_timestep_tend and aero_model_drydep are called.
Prints are off by default.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-13 14:15:09 -060003f75fdc3aeecaf12342e27972750c5c0003c0d4Clean up new debug print code in physpkg.F90editsrc/physics/cam/physpkg.F90
- src/physics/cam/constituents.F90e8b0747d5027b3549be5bcd2a5e59dfd8427dea51663100187000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduExpand error prints in constituents module for clarify
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-13 14:16:27 -0600e8b0747d5027b3549be5bcd2a5e59dfd8427dea5Expand error prints in constituents module for clarifyeditsrc/physics/cam/constituents.F90
- src/chemistry/geoschem/chemistry.F90a11b7e867fb9d208b1f2061a55a7444faab7b1501663100676000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove online land type option when using GEOS-Chem and use Olson/XLAI
Dry deposition in GEOS-Chem now uses a combination of CLM dry deposition
velocities and GEOS-Chem computed velocities which is determined by
presence of ocean (100% CLM velocities if no ocean, 100% GEOS-Chem
velocities if all ocean, and a scaled value of the two if in between).
This update also uncomments several code that set State_Met fields, and
the logicals for CLM drydep vel and online land type is removed (the
former is effectively now always true and the latter is always false).
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-13 14:24:36 -0600a11b7e867fb9d208b1f2061a55a7444faab7b150Remove online land type option when using GEOS-Chem and use Olson/XLAIeditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F903a27896fcc5da4ce0e9d361d98ce20ecc637a95c1663357242000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate GEOS-Chem chemistry log messages for clarity
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-16 13:40:42 -06003a27896fcc5da4ce0e9d361d98ce20ecc637a95cUpdate GEOS-Chem chemistry log messages for clarityeditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F90d9d9f67b5b1ba49404bfeb73926dbb32e4503a9b1663357826000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unused code from GEOS-Chem chemistry.F90 file
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-16 13:50:26 -0600d9d9f67b5b1ba49404bfeb73926dbb32e4503a9bRemove unused code from GEOS-Chem chemistry.F90 fileeditsrc/chemistry/geoschem/chemistry.F90
- Externals_CAM.cfg5ddd22e02bade976bf5ba61332a48765a4561f5f1663781519000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduExternals update to use latest GEOS-Chem, HEMCO_CESM, and HEMCO
These will need to change again before merge because GEOS-Chem 14.0.0
and HEMCO 3.5.0 are not yet released, and I am now using my fork of
HEMCO_CESM with modifications needed to link to and build latest HEMCO
as is.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-21 11:31:59 -06005ddd22e02bade976bf5ba61332a48765a4561f5fExternals update to use latest GEOS-Chem, HEMCO_CESM, and HEMCOeditExternals_CAM.cfg
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/hist_geoschem.xmlfd67bd8ed57b679873d58574586375afd1f373f21663790657000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduTemporarily put wetdep and drydep lists in namelist file per GEOS-Chem case
This is until there is a better way to handle the wetdep and drydep
lists for GEOS-Chem cases
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-21 14:04:17 -0600fd67bd8ed57b679873d58574586375afd1f373f2Temporarily put wetdep and drydep lists in namelist file per GEOS-Chem caseeditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xml
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlbfd2a090261eadb3cfc71a36d233a3108e2283611663790728000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd deposition coefficient data file to GEOS-Chem use case files
Eventually this will go higher up in the cam bld directory since the
same file is used for all GEOS-Chem cases.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-21 14:05:28 -0600bfd2a090261eadb3cfc71a36d233a3108e228361Add deposition coefficient data file to GEOS-Chem use case fileseditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xml
- src/chemistry/geoschem/mo_neu_wetdep.F905da5680d321a0692f11928e50d658f177d2bd7451663790761000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduMinor edit to Neu wet deposition debug code when using GEOS-Chem
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-21 14:06:01 -06005da5680d321a0692f11928e50d658f177d2bd745Minor edit to Neu wet deposition debug code when using GEOS-Chemeditsrc/chemistry/geoschem/mo_neu_wetdep.F90
- bld/configuresrc/chemistry/geoschem/mo_sim_dat.F90src/chemistry/geoschem/chem_mods.F9033de60e26fb35f932a783746d54695c1328bd4531663955712000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd non-advected GEOS-Chem species OH and HO2 to solsym for diagnostics
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-23 11:55:12 -060033de60e26fb35f932a783746d54695c1328bd453Add non-advected GEOS-Chem species OH and HO2 to solsym for diagnosticseditbld/configureeditsrc/chemistry/geoschem/mo_sim_dat.F90editsrc/chemistry/geoschem/chem_mods.F90
- bld/namelist_files/use_cases/sd_geoschem.xmlcime_config/config_compsets.xml06985e5ee4397e921fcad583046c07e81f319ade1663955799000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange default FCSD_GC year from 2005 to 2015
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-23 11:56:39 -060006985e5ee4397e921fcad583046c07e81f319adeChange default FCSD_GC year from 2005 to 2015editbld/namelist_files/use_cases/sd_geoschem.xmleditcime_config/config_compsets.xml
- bld/configuresrc/chemistry/geoschem/chem_mods.F90822cd06727acfcfc8e79b1e2528aa554cbee19741664307621000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix parameters incremented for non-advected species added to solysm
Only gas_pcnst should be incremented when adding non-advected species to
solsym.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-27 13:40:21 -0600822cd06727acfcfc8e79b1e2528aa554cbee1974Fix parameters incremented for non-advected species added to solysmeditbld/configureeditsrc/chemistry/geoschem/chem_mods.F90
- src/chemistry/geoschem/chem_mods.F90cime_config/config_compsets.xml805659715e1d158374aa9ebd65fdc675529cdc7d1664308436000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange Default FCHIST_GC run startdate year from 2010 t0 2015
This avoids an error retrieving CEDS emissions for which 2010 is not
available.
This update also include a minor comment change in chem_mods.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-27 13:53:56 -0600805659715e1d158374aa9ebd65fdc675529cdc7dChange Default FCHIST_GC run startdate year from 2010 t0 2015editsrc/chemistry/geoschem/chem_mods.F90editcime_config/config_compsets.xml
- src/cpl/nuopc/atm_import_export.F90a89b9cb3a13597bb66dad50bbd08d4f3d2870bb21664483446000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd friction velocity as a nuopc import in CAM
Ustar is used in GEOS-Chem dry deposition over ocean
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-09-29 14:30:46 -0600a89b9cb3a13597bb66dad50bbd08d4f3d2870bb2Add friction velocity as a nuopc import in CAMeditsrc/cpl/nuopc/atm_import_export.F90
- src/physics/carma/models/meteor_smoke/carma_model_mod.F90src/physics/carma/models/meteor_impact/carma_model_mod.F90src/physics/carma/models/test_radiative/carma_model_mod.F90src/physics/carma/models/test_swelling/carma_model_mod.F90src/physics/carma/models/sulfate/carma_model_mod.F90src/physics/carma/models/test_passive/carma_model_mod.F90src/physics/carma/models/test_growth/carma_model_mod.F90src/physics/carma/models/mixed_sulfate/carma_model_mod.F90Externals_CAM.cfgsrc/physics/carma/models/sea_salt/carma_model_mod.F90src/physics/carma/models/test_tracers/carma_model_mod.F90src/physics/carma/models/test_tracers2/carma_model_mod.F90src/physics/carma/models/pmc/carma_model_mod.F90src/physics/carma/models/dust/carma_model_mod.F904550b55237fc72d7fa4756afc08617beaacbabf31665614771000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse carma base tag carma4_01; misc cleanup
modified: Externals_CAM.cfg
modified: src/physics/carma/models/dust/carma_model_mod.F90
modified: src/physics/carma/models/meteor_impact/carma_model_mod.F90
modified: src/physics/carma/models/meteor_smoke/carma_model_mod.F90
modified: src/physics/carma/models/mixed_sulfate/carma_model_mod.F90
modified: src/physics/carma/models/pmc/carma_model_mod.F90
modified: src/physics/carma/models/sea_salt/carma_model_mod.F90
modified: src/physics/carma/models/sulfate/carma_model_mod.F90
modified: src/physics/carma/models/test_growth/carma_model_mod.F90
modified: src/physics/carma/models/test_passive/carma_model_mod.F90
modified: src/physics/carma/models/test_radiative/carma_model_mod.F90
modified: src/physics/carma/models/test_swelling/carma_model_mod.F90
modified: src/physics/carma/models/test_tracers/carma_model_mod.F90
modified: src/physics/carma/models/test_tracers2/carma_model_mod.F90
2022-10-12 16:46:11 -06004550b55237fc72d7fa4756afc08617beaacbabf3use carma base tag carma4_01; misc cleanupeditsrc/physics/carma/models/sulfate/carma_model_mod.F90editsrc/physics/carma/models/mixed_sulfate/carma_model_mod.F90editsrc/physics/carma/models/test_tracers/carma_model_mod.F90editsrc/physics/carma/models/dust/carma_model_mod.F90editsrc/physics/carma/models/pmc/carma_model_mod.F90editsrc/physics/carma/models/test_growth/carma_model_mod.F90editExternals_CAM.cfgeditsrc/physics/carma/models/meteor_smoke/carma_model_mod.F90editsrc/physics/carma/models/sea_salt/carma_model_mod.F90editsrc/physics/carma/models/test_passive/carma_model_mod.F90editsrc/physics/carma/models/meteor_impact/carma_model_mod.F90editsrc/physics/carma/models/test_swelling/carma_model_mod.F90editsrc/physics/carma/models/test_tracers2/carma_model_mod.F90editsrc/physics/carma/models/test_radiative/carma_model_mod.F90
- src/physics/carma/cam/carma_intr.F90src/physics/carma/cam/carma_constants_mod.F90950110feba43a5fe4a0f5a28b63e297c9e1a6ffa1665682454000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educorrect dry dep history field description; misc cleanup
modified: src/physics/carma/cam/carma_constants_mod.F90
modified: src/physics/carma/cam/carma_intr.F90
2022-10-13 11:34:14 -0600950110feba43a5fe4a0f5a28b63e297c9e1a6ffacorrect dry dep history field description; misc cleanupeditsrc/physics/carma/cam/carma_intr.F90editsrc/physics/carma/cam/carma_constants_mod.F90
- cime_config/testdefs/testmods_dirs/cam/carma_sulfate/user_nl_camcime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_cambf90a279b74c36913914546302ad4a67b3d8cea71665692522000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduset ubc_specifier for waccm_ma_sulfur chemistry
modified: cime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_cam
modified: cime_config/testdefs/testmods_dirs/cam/carma_sulfate/user_nl_cam
2022-10-13 14:22:02 -0600bf90a279b74c36913914546302ad4a67b3d8cea7set ubc_specifier for waccm_ma_sulfur chemistryeditcime_config/testdefs/testmods_dirs/cam/carma_sulfate/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/carma_mixed_sulfate/user_nl_cam
- bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmlc8dd834f68542d46cf64c8fb3dba9920f30c57b91667245326000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAdd hemco_grid_xdim, hemco_grid_ydim namelist variables to configure HEMCO grid.
2022-10-31 13:42:06 -0600c8dd834f68542d46cf64c8fb3dba9920f30c57b9Add hemco_grid_xdim, hemco_grid_ydim namelist variables to configure HEMCO grid.editbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xml
- Externals_CAM.cfga9b8c514ae43503c17b61c705d618b6b56152c901667245827000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate HEMCO tag to hemco-cesm1_0_hemco3_5_0
2022-10-31 13:50:27 -0600a9b8c514ae43503c17b61c705d618b6b56152c90Update HEMCO tag to hemco-cesm1_0_hemco3_5_0editExternals_CAM.cfg
- src/chemistry/geoschem/cesmgc_history_mod.F90src/chemistry/geoschem/chemistry.F90cime_config/config_compsets.xmlaefa2ef854d657f77a3585e4ce2ffc12525663fe1667250368000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comExperimental first version of New History Diagnostics
2022-10-31 15:06:08 -0600aefa2ef854d657f77a3585e4ce2ffc12525663feExperimental first version of New History Diagnosticsaddsrc/chemistry/geoschem/cesmgc_history_mod.F90editcime_config/config_compsets.xmleditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/cesmgc_history_mod.F90src/chemistry/geoschem/cesmgc_diag_mod.F905cac78c863c812a393b15749ea8e4eff66b426981667321939000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comDisable legacy Jval_ approach; new history diags with debug (wip)
2022-11-01 10:58:59 -06005cac78c863c812a393b15749ea8e4eff66b42698Disable legacy Jval_ approach; new history diags with debug (wip)editsrc/chemistry/geoschem/cesmgc_diag_mod.F90editsrc/chemistry/geoschem/cesmgc_history_mod.F90
- src/chemistry/geoschem/cesmgc_history_mod.F90src/chemistry/geoschem/chemistry.F903f0e7253f7110fdf5f574f77912966a72826386d1667329422000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix diagnostic chunk bug; now functional
2022-11-01 13:03:42 -06003f0e7253f7110fdf5f574f77912966a72826386dFix diagnostic chunk bug; now functionaleditsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/cesmgc_history_mod.F90
- Externals_CAM.cfg23a2ca72261c9ff60c347464bfb896ceea59f8f21667497455000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate HEMCO external to 3.5.1
2022-11-03 11:44:15 -060023a2ca72261c9ff60c347464bfb896ceea59f8f2Update HEMCO external to 3.5.1editExternals_CAM.cfg
- cime_config/config_compsets.xml73b1cc2638559fb019c5a5e8d54ef507b2d614531667497755000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAdd FCnudged_GC component set based on FCnudged.
2022-11-03 11:49:15 -060073b1cc2638559fb019c5a5e8d54ef507b2d61453Add FCnudged_GC component set based on FCnudged.editcime_config/config_compsets.xml
- cime_config/config_component.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbabae9fd0e7c28f763afd9a006fecb705193a4521667502219000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAdd hist_geoschem_nudged.xml configuration for FCnudged_GC
2022-11-03 13:03:39 -0600babae9fd0e7c28f763afd9a006fecb705193a452Add hist_geoschem_nudged.xml configuration for FCnudged_GCeditcime_config/config_component.xmladdbld/namelist_files/use_cases/hist_geoschem_nudged.xml
- cime_config/config_compsets.xmlf19429eac49a3c7810725b15e9bc1f7137f20fab1667502410000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRemove config_compsets.xml change that does not belong to this branch and was added in error
2022-11-03 13:06:50 -0600f19429eac49a3c7810725b15e9bc1f7137f20fabRemove config_compsets.xml change that does not belong to this branch and was added in erroreditcime_config/config_compsets.xml
- src/control/cam_history_support.F90dca0f5ea099e8ad36758bdeafe72fc66e0c40f431667502458000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comExpand CAM history field name maximum to 32 chars
2022-11-03 13:07:38 -0600dca0f5ea099e8ad36758bdeafe72fc66e0c40f43Expand CAM history field name maximum to 32 charseditsrc/control/cam_history_support.F90
- bld/build-namelistc74560a8d8003fd4d95ba06546ac20ab2287b6e91667509475000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix bug that was forcing HEMCO_Config.rc as hemco_config_file
2022-11-03 15:04:35 -0600c74560a8d8003fd4d95ba06546ac20ab2287b6e9Fix bug that was forcing HEMCO_Config.rc as hemco_config_fileeditbld/build-namelist
- Externals_CAM.cfgea168b0858509fd41f70c9417ba31681563047321667511288000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix typo in HEMCO-CESM tag
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-11-03 17:34:48 -0400ea168b0858509fd41f70c9417ba3168156304732Fix typo in HEMCO-CESM tageditExternals_CAM.cfg
- src/ionosphere/waccmx/ionosphere_interface.F900cf06c6da32baf2df8677240ead5d6a7cf681a121667574042000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix bug in Z3GM diagnostic
modified: src/ionosphere/waccmx/ionosphere_interface.F90
2022-11-04 09:00:42 -06000cf06c6da32baf2df8677240ead5d6a7cf681a12fix bug in Z3GM diagnosticeditsrc/ionosphere/waccmx/ionosphere_interface.F90
- src/dynamics/mpas/driver/cam_mpas_subdriver.F90049054f66731808687c2e4053462c1e78d8cfb1e1667574120000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdded coefficient arrays used to compute the horizontal gradients of
cell-centered variables to the input and restart streams for the
MPAS dynamical core.
2022-11-04 09:02:00 -0600049054f66731808687c2e4053462c1e78d8cfb1eAdded coefficient arrays used to compute the horizontal gradients ofeditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90
- src/dynamics/mpas/dyn_comp.F905c655a6076899f0edd6c2a7ed344b522e223dec71667574120000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdded MPAS mesh information and coefficients for computing
the frontogenesis function to the dynamics export state
for use in d_p_coupling (where the frontogenesis function
and angle are computed).
2022-11-04 09:02:00 -06005c655a6076899f0edd6c2a7ed344b522e223dec7Added MPAS mesh information and coefficients for computingeditsrc/dynamics/mpas/dyn_comp.F90
- src/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/dp_coupling.F9034ece99b8421ee50ea6cb87b52c92e0fecc49db71667576767000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdded the option to compute the frontogenesis function and the
angle of del(theta) needed by the gravity-wave drag parameterization.
2022-11-04 09:46:07 -060034ece99b8421ee50ea6cb87b52c92e0fecc49db7Added the option to compute the frontogenesis function and theeditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/dyn_comp.F90
- src/dynamics/mpas/driver/cam_mpas_subdriver.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandssrc/dynamics/mpas/dp_coupling.F909e7f26d50eab49d44985d4f47ca24a6197531b2a1667576767000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduread cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean up
modified: cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commands
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
2022-11-04 09:46:07 -06009e7f26d50eab49d44985d4f47ca24a6197531b2aread cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean upeditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commands
- Externals_CAM.cfgcime_config/testdefs/testlist_cam.xmlsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90src/dynamics/mpas/dyn_comp.F90cime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xml4e52cded05b19c9227b973c57a151b74fc07b5081667576852000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduTurn on frontogenesis GWs in WACCM-SC; add cheyenne tests
modified: Externals_CAM.cfg
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
modified: src/dynamics/mpas/dyn_comp.F90
2022-11-04 09:47:32 -06004e52cded05b19c9227b973c57a151b74fc07b508Turn on frontogenesis GWs in WACCM-SC; add cheyenne testseditbld/namelist_files/namelist_defaults_cam.xmleditcime_config/testdefs/testlist_cam.xmleditExternals_CAM.cfgeditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editcime_config/config_pes.xmleditsrc/dynamics/mpas/dyn_comp.F90
- src/dynamics/mpas/dp_coupling.F90bdb4024082d7db872253c997d126534f46c2752b1667576852000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix restarts by haloing tracers; append constants with _r8 kind
modified: src/dynamics/mpas/dp_coupling.F90
2022-11-04 09:47:32 -0600bdb4024082d7db872253c997d126534f46c2752bfix restarts by haloing tracers; append constants with _r8 kindeditsrc/dynamics/mpas/dp_coupling.F90
- src/dynamics/mpas/dyn_grid.F90src/dynamics/mpas/dp_coupling.F90src/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/driver/cam_mpas_subdriver.F901375fc58105ae269a926cd9acf5ff0dcb4aa5bc21667577255000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edusome code clean up
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
modified: src/dynamics/mpas/dyn_comp.F90
modified: src/dynamics/mpas/dyn_grid.F90
2022-11-04 09:54:15 -06001375fc58105ae269a926cd9acf5ff0dcb4aa5bc2some code clean upeditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/dyn_grid.F90editsrc/dynamics/mpas/dyn_comp.F90editsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90
- src/ionosphere/waccmx/ionosphere_interface.F901aabd83c067ae76c672c478f3ad0dc6d077ca02f1667577255000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix bug in Z3GM diagnostic
modified: src/ionosphere/waccmx/ionosphere_interface.F90
2022-11-04 09:54:15 -06001aabd83c067ae76c672c478f3ad0dc6d077ca02ffix bug in Z3GM diagnosticeditsrc/ionosphere/waccmx/ionosphere_interface.F90
- src/chemistry/geoschem/cesmgc_history_mod.F900af7d6649f0efb177c79719dd58ee6fadeb00ead1667598267000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRemove debugging routines
2022-11-04 15:44:27 -06000af7d6649f0efb177c79719dd58ee6fadeb00eadRemove debugging routineseditsrc/chemistry/geoschem/cesmgc_history_mod.F90
- bld/namelist_files/namelist_definition.xmlbld/build-namelist17b61802c74dc492378b377a7e1a0a97f862cd8a1668023827000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix HEMCO namelist bugs
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-11-09 12:57:07 -070017b61802c74dc492378b377a7e1a0a97f862cd8aFix HEMCO namelist bugseditbld/namelist_files/namelist_definition.xmleditbld/build-namelist
- Externals_CAM.cfg13607ad53295974392e98ed9d3e6422489a028191668026142000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpgrade GEOS-Chem to version 14.0.1
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>hemco
2022-11-09 13:35:42 -070013607ad53295974392e98ed9d3e6422489a02819Upgrade GEOS-Chem to version 14.0.1editExternals_CAM.cfg
- src/chemistry/geoschem/cesmgc_emissions_mod.F90dc68379b20ee8749127cd1545d5f04f2c68114d51668455998000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix MEGAN emissions in CESM-GC - active_fall_flxvoc is a logical and not integer
2022-11-14 12:59:58 -0700dc68379b20ee8749127cd1545d5f04f2c68114d5Fix MEGAN emissions in CESM-GC - active_fall_flxvoc is a logical and not integereditsrc/chemistry/geoschem/cesmgc_emissions_mod.F90
- bld/namelist_files/use_cases/hist_geoschem_nudged.xml224faaff2e434cba8c4d85dc4f0f84df1122f26b1668468038000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAdd comments on xml source
2022-11-14 16:20:38 -0700224faaff2e434cba8c4d85dc4f0f84df1122f26bAdd comments on xml sourceeditbld/namelist_files/use_cases/hist_geoschem_nudged.xml
- src/chemistry/geoschem/cesmgc_history_mod.F9007d197ce55dc1f8a974486e2db4dc391fced1de41668631714000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate comments; remove more debug routines
2022-11-16 13:48:34 -070007d197ce55dc1f8a974486e2db4dc391fced1de4Update comments; remove more debug routineseditsrc/chemistry/geoschem/cesmgc_history_mod.F90
- src/chemistry/geoschem/cesmgc_history_mod.F90a0742f43bc9db3de5bee67ae5fa7c078a78bd6fc1668649296000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRemove array temporary allocations; now use one outTmp_3D and outTmp_2D for 3D and 2D data.
2022-11-16 18:41:36 -0700a0742f43bc9db3de5bee67ae5fa7c078a78bd6fcRemove array temporary allocations; now use one outTmp_3D and outTmp_2D for 3D and 2D data.editsrc/chemistry/geoschem/cesmgc_history_mod.F90
- src/chemistry/geoschem/cesmgc_diag_mod.F90cbe679e2de8a2a0c7195f50b9f0560210bd683951668705407000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRemove unnecessary legacy code in cesmgc_diag_mod.F90
2022-11-17 10:16:47 -0700cbe679e2de8a2a0c7195f50b9f0560210bd68395Remove unnecessary legacy code in cesmgc_diag_mod.F90editsrc/chemistry/geoschem/cesmgc_diag_mod.F90
- src/chemistry/geoschem/cesmgc_history_mod.F90src/chemistry/geoschem/chemistry.F900c6204e1fe72a6df112b86a31be365d7e9524d221668705469000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate comments; remove extraneous GC_FAILURE call to address review comments
2022-11-17 10:17:49 -07000c6204e1fe72a6df112b86a31be365d7e9524d22Update comments; remove extraneous GC_FAILURE call to address review commentseditsrc/chemistry/geoschem/cesmgc_history_mod.F90editsrc/chemistry/geoschem/chemistry.F90
- src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F90a90177a14ddf70bc100ec46d53e731130f56c5fa1668807627000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRainbow code changes first pass
2022-11-18 14:40:27 -0700a90177a14ddf70bc100ec46d53e731130f56c5faRainbow code changes first passeditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam/micro_pumas_cam.F90
- src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F90e6fb84276a438d1f8d75f7f68341909a3336d4b91668817681000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduCode cleanup, bug fixed
2022-11-18 17:28:01 -0700e6fb84276a438d1f8d75f7f68341909a3336d4b9Code cleanup, bug fixededitsrc/physics/cam/micro_pumas_cam.F90editsrc/physics/cam_dev/micro_pumas_cam.F90
- Externals.cfg76bd32aa35dc0ead94b841cc3bf985b5bd2064861671124448000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange CMEPS and coupler remotes from fvitt to ESCOMP github
Francis Vitt's updates required for GEOS-Chem are now merged into the
main development branches and therefore his GitHub branches do not need
to be used.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-12-15 10:14:08 -070076bd32aa35dc0ead94b841cc3bf985b5bd206486Change CMEPS and coupler remotes from fvitt to ESCOMP githubeditExternals.cfg
- src/physics/cam/modal_aer_opt.F90Externals_CAM.cfgsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam/microp_driver.F9044a3586353d481e473d64a22ead1a9eb5d9aa8721671224669000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduInitial machine learning code for PUMAS
2022-12-16 14:04:29 -070044a3586353d481e473d64a22ead1a9eb5d9aa872Initial machine learning code for PUMASeditsrc/physics/cam_dev/micro_pumas_cam.F90editExternals_CAM.cfgeditsrc/physics/cam/microp_driver.F90editsrc/physics/cam/modal_aer_opt.F90
- Externals_CAM.cfg15ec0f0e1fea8aaa3d34cd79bfbf41e8ba5a34d51671495775000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external for amk and ank allocations
2022-12-19 17:22:55 -070015ec0f0e1fea8aaa3d34cd79bfbf41e8ba5a34d5Update PUMAS external for amk and ank allocationseditExternals_CAM.cfg
- src/chemistry/geoschem/mo_lightning.F90src/chemistry/geoschem/tracer_srcs.F90src/chemistry/geoschem/chemistry.F90bld/configuresrc/chemistry/geoschem/fire_emissions.F90src/chemistry/geoschem/mo_mean_mass.F90src/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/geoschem/epp_ionization.F90src/chemistry/geoschem/upper_bc.F90src/chemistry/mozart/mo_chem_utls.F90src/chemistry/geoschem/mo_apex.F90src/chemistry/geoschem/mo_ghg_chem.F90src/chemistry/geoschem/mo_tracname.F90src/chemistry/geoschem/rate_diags.F90src/chemistry/geoschem/gas_wetdep_opts.F90src/chemistry/geoschem/mo_gas_phase_chemdr.F90src/chemistry/geoschem/clybry_fam.F90src/chemistry/geoschem/mo_drydep.F90src/chemistry/geoschem/tracer_cnst.F90src/chemistry/geoschem/charge_neutrality.F90src/chemistry/modal_aero/modal_aero_gasaerexch.F90src/chemistry/modal_aero/sox_cldaero_mod.F90src/chemistry/geoschem/mo_chem_utls.F90src/chemistry/geoschem/mo_setinv.F90a20ed2df3ac978f6891ea744299262fc9b06c92f1671729089000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduReduce GEOS-Chem dir mozart files; build mozart and pp_none if geos-chem
This update required modifications to mozart/mo_chem_utls.F90 to allow
optional argument for comparing upper-case letters in function
get_spc_ndx.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2022-12-22 10:11:29 -0700a20ed2df3ac978f6891ea744299262fc9b06c92fReduce GEOS-Chem dir mozart files; build mozart and pp_none if geos-chemdeletesrc/chemistry/geoschem/epp_ionization.F90deletesrc/chemistry/geoschem/clybry_fam.F90deletesrc/chemistry/geoschem/fire_emissions.F90deletesrc/chemistry/geoschem/rate_diags.F90deletesrc/chemistry/geoschem/charge_neutrality.F90editsrc/chemistry/geoschem/cesmgc_diag_mod.F90deletesrc/chemistry/geoschem/mo_ghg_chem.F90deletesrc/chemistry/geoschem/mo_setinv.F90editbld/configuredeletesrc/chemistry/geoschem/mo_lightning.F90deletesrc/chemistry/geoschem/mo_tracname.F90editsrc/chemistry/modal_aero/sox_cldaero_mod.F90deletesrc/chemistry/geoschem/tracer_cnst.F90deletesrc/chemistry/geoschem/mo_drydep.F90editsrc/chemistry/geoschem/chemistry.F90deletesrc/chemistry/geoschem/mo_apex.F90deletesrc/chemistry/geoschem/mo_mean_mass.F90editsrc/chemistry/modal_aero/modal_aero_gasaerexch.F90deletesrc/chemistry/geoschem/gas_wetdep_opts.F90deletesrc/chemistry/geoschem/tracer_srcs.F90deletesrc/chemistry/geoschem/upper_bc.F90deletesrc/chemistry/geoschem/mo_gas_phase_chemdr.F90deletesrc/chemistry/geoschem/mo_chem_utls.F90editsrc/chemistry/mozart/mo_chem_utls.F90
- bld/namelist_files/namelist_definition.xmlExternals_CAM.cfgbld/build-namelistsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam/microp_driver.F90c434e558ad57a084bb68e5a6fddbeee9934db5271671830782000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduInitial mods for namelist micro_mg_warm_rain
2022-12-23 14:26:22 -0700c434e558ad57a084bb68e5a6fddbeee9934db527Initial mods for namelist micro_mg_warm_raineditbld/build-namelisteditExternals_CAM.cfgeditbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/microp_driver.F90editsrc/physics/cam_dev/micro_pumas_cam.F90
- src/chemistry/geoschem/getLandTypes.F909c5f0b4c8261eada8270a1af9e193609d42cf6051672861205000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemoved unused file geoschem/getLandTypes.F90
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-04 12:40:05 -07009c5f0b4c8261eada8270a1af9e193609d42cf605Removed unused file geoschem/getLandTypes.F90deletesrc/chemistry/geoschem/getLandTypes.F90
- src/chemistry/mozart/mo_neu_wetdep.F90src/chemistry/geoschem/mo_neu_wetdep.F900458ae6f8a45caad2edef034a742ef90893b0fae1672861286000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduModify mozart module mo_neu_wetdep for use when GEOS-Chem chemistry enabled
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-04 12:41:26 -07000458ae6f8a45caad2edef034a742ef90893b0faeModify mozart module mo_neu_wetdep for use when GEOS-Chem chemistry enablededitsrc/chemistry/mozart/mo_neu_wetdep.F90deletesrc/chemistry/geoschem/mo_neu_wetdep.F90
- src/chemistry/geoschem/chem_prod_loss_diags.F90c7d196c3438065e192b2b04aa57ba874eb46ea9d1672861309000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse mozart chem_prod_loss_diags.F90 rather than copy if GEOS-Chem enabled
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-04 12:41:49 -0700c7d196c3438065e192b2b04aa57ba874eb46ea9dUse mozart chem_prod_loss_diags.F90 rather than copy if GEOS-Chem enableddeletesrc/chemistry/geoschem/chem_prod_loss_diags.F90
- Externals_CAM.cfg2b5be1d93b7f84d6a41ee2476a49cdfa5eb16ba81672953775000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS tag
2023-01-05 14:22:55 -07002b5be1d93b7f84d6a41ee2476a49cdfa5eb16ba8Update PUMAS tageditExternals_CAM.cfg
- Externals_CAM.cfgdd4b431d5f981b5d9e5f8d878d4b6785fbdc79341672961346000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS hash
2023-01-05 16:29:06 -0700dd4b431d5f981b5d9e5f8d878d4b6785fbdc7934Update PUMAS hasheditExternals_CAM.cfg
- src/chemistry/geoschem/chemistry.F90src/chemistry/pp_trop_mam3/chem_mods.F90src/chemistry/geoschem/short_lived_species.F90src/chemistry/pp_trop_mam7/chem_mods.F90src/chemistry/pp_waccm_ma/chem_mods.F90src/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90src/chemistry/geoschem/chem_mods.F90src/chemistry/pp_none/chem_mods.F90src/chemistry/pp_waccm_mad_mam4/chem_mods.F90src/chemistry/pp_waccm_sc/chem_mods.F90src/chemistry/mozart/short_lived_species.F90src/chemistry/pp_waccm_sc_mam4/chem_mods.F90src/chemistry/pp_trop_mozart/chem_mods.F90src/chemistry/pp_waccm_ma_sulfur/chem_mods.F90src/chemistry/pp_trop_strat_mam4_ts2/chem_mods.F90src/chemistry/pp_waccm_mad/chem_mods.F90src/chemistry/pp_terminator/chem_mods.F90src/chemistry/pp_trop_mam4/chem_mods.F90src/chemistry/pp_waccm_ma_mam4/chem_mods.F90src/chemistry/pp_waccm_tsmlt_mam4/chem_mods.F90src/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90src/chemistry/pp_trop_mam5/chem_mods.F90src/chemistry/pp_waccm_tsmlt_mam5/chem_mods.F90ae549e22f1e3d2f02d68826221c36a5f9f3b5e2e1673293303000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduModifications to use Mozart short_lived_species module in GEOS-Chem
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-09 12:41:43 -0700ae549e22f1e3d2f02d68826221c36a5f9f3b5e2eModifications to use Mozart short_lived_species module in GEOS-Chemeditsrc/chemistry/pp_waccm_tsmlt_mam4/chem_mods.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/pp_waccm_sc/chem_mods.F90editsrc/chemistry/pp_none/chem_mods.F90editsrc/chemistry/pp_waccm_ma_sulfur/chem_mods.F90editsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/pp_trop_mam5/chem_mods.F90editsrc/chemistry/pp_waccm_tsmlt_mam5/chem_mods.F90editsrc/chemistry/pp_terminator/chem_mods.F90editsrc/chemistry/pp_waccm_ma/chem_mods.F90editsrc/chemistry/mozart/short_lived_species.F90editsrc/chemistry/pp_trop_mozart/chem_mods.F90editsrc/chemistry/pp_trop_mam4/chem_mods.F90editsrc/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90editsrc/chemistry/pp_waccm_mad_mam4/chem_mods.F90deletesrc/chemistry/geoschem/short_lived_species.F90editsrc/chemistry/pp_trop_strat_mam4_ts2/chem_mods.F90editsrc/chemistry/pp_waccm_sc_mam4/chem_mods.F90editsrc/chemistry/pp_waccm_mad/chem_mods.F90editsrc/chemistry/pp_trop_mam7/chem_mods.F90editsrc/chemistry/pp_trop_mam3/chem_mods.F90editsrc/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90editsrc/chemistry/pp_waccm_ma_mam4/chem_mods.F90
- src/cpl/mct/cam_cpl_indices.F90src/chemistry/geoschem/chemistry.F90src/physics/cam/physpkg.F90src/cpl/nuopc/atm_comp_nuopc.F9008ea9a38ae17ce4f2c7cc8d97ba6c2fc0002be911673388820000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd missing GEOS-Chem diagnostics subroutine calls; cleanup other files
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-10 15:13:40 -070008ea9a38ae17ce4f2c7cc8d97ba6c2fc0002be91Add missing GEOS-Chem diagnostics subroutine calls; cleanup other fileseditsrc/cpl/nuopc/atm_comp_nuopc.F90editsrc/physics/cam/physpkg.F90editsrc/cpl/mct/cam_cpl_indices.F90editsrc/chemistry/geoschem/chemistry.F90
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/build-namelistbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlf60ef7a859f12d682432683c80da16e2d92d5a371673473126000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate GEOS-Chem compset diagnostics list; fix build-namelist permissions
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-11 14:38:46 -0700f60ef7a859f12d682432683c80da16e2d92d5a37Update GEOS-Chem compset diagnostics list; fix build-namelist permissionseditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/build-namelisteditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xml
- bld/namelist_files/namelist_defaults_cam.xmlf9de91643febc094af55578bded6f6aae3ce5efd1673543972000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate cam_physics_mesh defaults for HEMCO
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-01-12 10:19:32 -0700f9de91643febc094af55578bded6f6aae3ce5efdUpdate cam_physics_mesh defaults for HEMCOeditbld/namelist_files/namelist_defaults_cam.xml
- Externals_CAM.cfgsrc/physics/cam_dev/micro_pumas_cam.F90bld/build-namelistbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/microp_driver.F90353d7cd1bcdada488118c712e30bc410ea1ee7021673557495000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduVarious code cleanup
2023-01-12 14:04:55 -0700353d7cd1bcdada488118c712e30bc410ea1ee702Various code cleanupeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90editExternals_CAM.cfgeditsrc/physics/cam/microp_driver.F90editbld/build-namelist
- src/physics/cam/modal_aer_opt.F901eacd3921b429fb70d84f44cc2def0367e3026b81673567860000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix for modal_aer_opt failures
2023-01-12 16:57:40 -07001eacd3921b429fb70d84f44cc2def0367e3026b8Fix for modal_aer_opt failureseditsrc/physics/cam/modal_aer_opt.F90
- src/physics/cam_dev/micro_pumas_cam.F901697de07615567e56543f6e6d36c9341438843f21674234192000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduEnclose additional section in check for machine learning code
2023-01-20 10:03:12 -07001697de07615567e56543f6e6d36c9341438843f2Enclose additional section in check for machine learning codeeditsrc/physics/cam_dev/micro_pumas_cam.F90
- src/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/geoschem/mo_sim_dat.F90src/chemistry/geoschem/chem_mods.F900d98d570a6769294e82dc9f566ba78b869cdcfeb1674241280000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comDraft commit to support HEMCO_CESM v1.1.0.
- Only emissions in extfrc_lst (in mo_sim_dat) will have 3-D emissions now, as only these will have a 3-D pbuf available to save memory. This is accounted for in cesmgc_emissions_mod.F90.
- The list of species with 3-D emissions in GEOS-Chem are now listed in mo_sim_dat.F90.
- The number of species with 3-D emissions (length of extfrc_lst) is now specified in extcnt in chem_mods.F90.
This is a preliminary commit. Further updates are needed to update the HEMCO_CESM external to the appropriate version, as well as moving up to HEMCO 3.6.0.
2023-01-20 14:01:20 -05000d98d570a6769294e82dc9f566ba78b869cdcfebDraft commit to support HEMCO_CESM v1.1.0.editsrc/chemistry/geoschem/mo_sim_dat.F90editsrc/chemistry/geoschem/cesmgc_emissions_mod.F90editsrc/chemistry/geoschem/chem_mods.F90
- Externals_CAM.cfgbe0b0c17d9cd9c35a76bbe2123a059a28d1cd5511674241593000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external
2023-01-20 12:06:33 -0700be0b0c17d9cd9c35a76bbe2123a059a28d1cd551Update PUMAS externaleditExternals_CAM.cfg
- src/physics/cam/stochastic_collect_tau_cam.F90Externals_CAM.cfg934c91a6136b02903a12ca02b142e642f853c0161674752595000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd stochastic_collect_tau_cam.F90
2023-01-26 10:03:15 -0700934c91a6136b02903a12ca02b142e642f853c016Add stochastic_collect_tau_cam.F90editExternals_CAM.cfgaddsrc/physics/cam/stochastic_collect_tau_cam.F90
- src/physics/cam/stochastic_collect_tau_cam.F90Externals_CAM.cfgsrc/physics/cam_dev/micro_pumas_cam.F90eaf9fdce25ab02608997a55df9b20e350eaf38451675100279000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduSeparate stochastic module into CAM and PUMAS specific and introduce CAM's version
2023-01-30 10:37:59 -0700eaf9fdce25ab02608997a55df9b20e350eaf3845Separate stochastic module into CAM and PUMAS specific and introduce CAM's versioneditsrc/physics/cam_dev/micro_pumas_cam.F90editExternals_CAM.cfgeditsrc/physics/cam/stochastic_collect_tau_cam.F90
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandssrc/dynamics/mpas/dp_coupling.F90cime_config/testdefs/testlist_cam.xmlsrc/dynamics/mpas/dyn_comp.F90cime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_cam7a0fb78f5b6faa7fdb3990738f496f9bbdb5600d1675185069000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadjust regression test list; minor code changes
modified: cime_config/testdefs/testlist_cam.xml
modified: cime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_cam
modified: cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commands
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/dyn_comp.F90
2023-01-31 10:11:09 -07007a0fb78f5b6faa7fdb3990738f496f9bbdb5600dadjust regression test list; minor code changeseditcime_config/testdefs/testlist_cam.xmleditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandseditsrc/dynamics/mpas/dp_coupling.F90editcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_cameditsrc/dynamics/mpas/dyn_comp.F90
- bld/namelist_files/namelist_definition.xml514772f90e4cf3571adb14c14169b00d6e0443c11675203366000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix issue #690
modified: bld/namelist_files/namelist_definition.xml
2023-01-31 15:16:06 -0700514772f90e4cf3571adb14c14169b00d6e0443c1fix issue #690editbld/namelist_files/namelist_definition.xml
- src/physics/cam/stochastic_collect_tau_cam.F90Externals_CAM.cfgeb3c76af61e32c0dc8c1141b50c315969d0bd56b1675294220000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduBring in updated ML code
2023-02-01 16:30:20 -0700eb3c76af61e32c0dc8c1141b50c315969d0bd56bBring in updated ML codeeditsrc/physics/cam/stochastic_collect_tau_cam.F90editExternals_CAM.cfg
- src/physics/cam/stochastic_collect_tau_cam.F90src/physics/cam_dev/stochastic_collect_tau_cam.F90Externals_CAM.cfgf27d906a60f1b44853511b4e196743319f91bef91675364864000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.edumove location of stochastic_collect_tau_cam.F90 from cam to cam_dev directory
2023-02-02 12:07:44 -0700f27d906a60f1b44853511b4e196743319f91bef9move location of stochastic_collect_tau_cam.F90 from cam to cam_dev directoryeditExternals_CAM.cfgdeletesrc/physics/cam/stochastic_collect_tau_cam.F90addsrc/physics/cam_dev/stochastic_collect_tau_cam.F90
- Externals_CAM.cfg6bbc1456daa58d988a9164158658f8d06dfb20be1675470372000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS
2023-02-03 17:26:12 -07006bbc1456daa58d988a9164158658f8d06dfb20beUpdate PUMASeditExternals_CAM.cfg
- Externals_CAM.cfg60861dca9d4c380b42605970baf4ce47a85e5be51675969914000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comTag to upstream HEMCO-CESM 1.1.0 and HEMCO 3.6.0
2023-02-09 14:11:54 -050060861dca9d4c380b42605970baf4ce47a85e5be5Tag to upstream HEMCO-CESM 1.1.0 and HEMCO 3.6.0editExternals_CAM.cfg
- src/chemistry/geoschem/cesmgc_emissions_mod.F9099e30ec788fc125928829c8f0951ed57253d2b6e1676316306000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix automatic array indexing
2023-02-13 14:25:06 -050099e30ec788fc125928829c8f0951ed57253d2b6eFix automatic array indexingeditsrc/chemistry/geoschem/cesmgc_emissions_mod.F90
- src/physics/cam_dev/stochastic_collect_tau_cam.F90bld/namelist_files/namelist_definition.xmlExternals_CAM.cfgsrc/physics/cam_dev/stochastic_emulate_cam.F90src/physics/cam_dev/micro_pumas_cam.F902ada00e3543f0830aea9ab0c74d9ce0dcb4994991677281542000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduMore cleanup
2023-02-24 16:32:22 -07002ada00e3543f0830aea9ab0c74d9ce0dcb499499More cleanupaddsrc/physics/cam_dev/stochastic_emulate_cam.F90editsrc/physics/cam_dev/micro_pumas_cam.F90editExternals_CAM.cfgeditsrc/physics/cam_dev/stochastic_collect_tau_cam.F90editbld/namelist_files/namelist_definition.xml
- src/chemistry/geoschem/chemistry.F90fb7acecad6906a187f19d380096902d92efbe76a1677776914000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdates H2SO4 production rate passed to MAM4 sulfate nucleation
to use actual H2SO4 production rate computed by KPP in GEOS-Chem
(SO2 + OH). This commit requires GEOS-Chem 14.1.1.
2023-03-02 12:08:34 -0500fb7acecad6906a187f19d380096902d92efbe76aUpdates H2SO4 production rate passed to MAM4 sulfate nucleationeditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F90c5f6792faeb80281d00ab3256f730fea6d4ffe3b1677777451000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUse online CLM albedo for CESM-GC simulations instead of offline albedo from archive
2023-03-02 12:17:31 -0500c5f6792faeb80281d00ab3256f730fea6d4ffe3bUse online CLM albedo for CESM-GC simulations instead of offline albedo from archiveeditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chem_mods.F90f501dfba11305d94b7e9d434298d3a02a43380831677782498000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comSet rxt_tag_cnt to 0 in GEOS-Chem as feature is unused
2023-03-02 13:41:38 -0500f501dfba11305d94b7e9d434298d3a02a4338083Set rxt_tag_cnt to 0 in GEOS-Chem as feature is unusededitsrc/chemistry/geoschem/chem_mods.F90
- src/chemistry/geoschem/cesmgc_diag_mod.F909126efbe78796ea7675ab76a452d39ad10809ed11677788383000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate cesmgc_diag_mod for moved ucx_mod module variables
2023-03-02 15:19:43 -05009126efbe78796ea7675ab76a452d39ad10809ed1Update cesmgc_diag_mod for moved ucx_mod module variableseditsrc/chemistry/geoschem/cesmgc_diag_mod.F90
- src/chemistry/geoschem/chemistry.F9037b34b1dd4d731d3db6ce4edf00f05c2c85fe6c81677788578000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRemove LWI; remove cleanup_ucx
2023-03-02 15:22:58 -050037b34b1dd4d731d3db6ce4edf00f05c2c85fe6c8Remove LWI; remove cleanup_ucxeditsrc/chemistry/geoschem/chemistry.F90
- Externals_CAM.cfg0fadb7bd2e5985a0f3978e462ca8a1c2fdab517e1677798738000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate to upstream HEMCO-CESM 1.1.1 and HEMCO 3.6.2
2023-03-02 18:12:18 -05000fadb7bd2e5985a0f3978e462ca8a1c2fdab517eUpdate to upstream HEMCO-CESM 1.1.1 and HEMCO 3.6.2editExternals_CAM.cfg
- src/chemistry/geoschem/chemistry.F909af0d172a5c3feaaf3efc7b67ae4ab8697f02e531677872646000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAlso run Init_UCX per State_Chm, not just once
2023-03-03 14:44:06 -05009af0d172a5c3feaaf3efc7b67ae4ab8697f02e53Also run Init_UCX per State_Chm, not just onceeditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F90a6a71d62a98359f56d9c3e9b47a0c0dc4696f86f1677887577000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comAdd comments on aerosol mapping code
2023-03-03 18:52:57 -0500a6a71d62a98359f56d9c3e9b47a0c0dc4696f86fAdd comments on aerosol mapping codeeditsrc/chemistry/geoschem/chemistry.F90
- Externals_CAM.cfg5afb2934a8324ad0614dae2a891dde1e9908c1cc1678124076000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem version tag to 14.1.1
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-03-06 10:34:36 -07005afb2934a8324ad0614dae2a891dde1e9908c1ccChange GEOS-Chem version tag to 14.1.1editExternals_CAM.cfg
- src/chemistry/geoschem/chemistry.F90src/chemistry/geoschem/geoschem_emissions_mod.F90src/chemistry/geoschem/geoschem_history_mod.F90src/chemistry/geoschem/cesmgc_emissions_mod.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/cesmgc_diag_mod.F90src/chemistry/geoschem/cesmgc_history_mod.F901cb122379822256a5311d122ea453e7ef7babaa31678126347000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange names of GEOS-Chem diagnostic and emissions modules and subroutines
The three GEOS-Chem modules for diagnostics and emissions are now
prefixed with 'geoschem_' and contain submodules prefixed with 'GC_'.
"Diag" is also expanded to "Diagnostics".
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-03-06 11:12:27 -07001cb122379822256a5311d122ea453e7ef7babaa3Change names of GEOS-Chem diagnostic and emissions modules and subroutinesdeletesrc/chemistry/geoschem/cesmgc_history_mod.F90addsrc/chemistry/geoschem/geoschem_emissions_mod.F90addsrc/chemistry/geoschem/geoschem_history_mod.F90deletesrc/chemistry/geoschem/cesmgc_emissions_mod.F90deletesrc/chemistry/geoschem/cesmgc_diag_mod.F90editsrc/chemistry/geoschem/chemistry.F90addsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90
- src/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_emulate_cam.F90src/physics/cam_dev/micro_pumas_cam.F90b05fcce9cb83f9d89e8e7d6ea04f44498fdf6c6e1678130260000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange emulate to emulated
2023-03-06 12:17:40 -0700b05fcce9cb83f9d89e8e7d6ea04f44498fdf6c6eChange emulate to emulatedaddsrc/physics/cam_dev/stochastic_emulated_cam.F90deletesrc/physics/cam_dev/stochastic_emulate_cam.F90editsrc/physics/cam_dev/micro_pumas_cam.F90
- src/physics/cam_dev/stochastic_collect_tau_cam.F90bld/namelist_files/namelist_definition.xmlExternals_CAM.cfgsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90d520770ca8fb2542bf67eceafc62283d07fd0c9a1678138818000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduIntroduce namelist setting of files for emulated
2023-03-06 14:40:18 -0700d520770ca8fb2542bf67eceafc62283d07fd0c9aIntroduce namelist setting of files for emulatededitbld/namelist_files/namelist_definition.xmleditExternals_CAM.cfgeditsrc/physics/cam_dev/micro_pumas_cam.F90addsrc/physics/cam_dev/stochastic_tau_cam.F90deletesrc/physics/cam_dev/stochastic_collect_tau_cam.F90editsrc/physics/cam_dev/stochastic_emulated_cam.F90
- src/chemistry/geoschem/chemistry.F90src/chemistry/pp_trop_mam3/chem_mods.F90src/chemistry/pp_trop_mam7/chem_mods.F90src/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90src/chemistry/geoschem/chem_mods.F90src/chemistry/mozart/chemistry.F90src/chemistry/pp_none/chem_mods.F90src/chemistry/pp_waccm_mad_mam4/chem_mods.F90src/chemistry/mozart/short_lived_species.F90src/chemistry/pp_waccm_sc/chem_mods.F90src/chemistry/pp_waccm_sc_mam4/chem_mods.F90src/chemistry/pp_trop_mozart/chem_mods.F90src/chemistry/pp_waccm_ma_sulfur/chem_mods.F90src/chemistry/pp_trop_strat_mam4_ts2/chem_mods.F90src/chemistry/pp_waccm_mad/chem_mods.F90src/chemistry/pp_terminator/chem_mods.F90src/chemistry/pp_trop_mam4/chem_mods.F90src/chemistry/pp_waccm_ma_mam4/chem_mods.F90src/chemistry/pp_waccm_tsmlt_mam4/chem_mods.F90src/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90src/chemistry/pp_trop_mam5/chem_mods.F90src/chemistry/pp_waccm_tsmlt_mam5/chem_mods.F9099a66984ac2619a5cc243e84a0887c78c01799d21678139707000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduMove short-lived reference MMR array from chem_mods to short-lived module
Reference mixing ratios for short-lived species can now be passed to
subroutine register_short_lived_species as an optional argument. If passed
then the new module variable for reference values will be allocated and
set using the values. Later during initialization these values will be
used if the module array is allocated. Also added is a new finalize
subroutine for the short_lived_species module so that the module
array is deallocated.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-03-06 14:55:07 -070099a66984ac2619a5cc243e84a0887c78c01799d2Move short-lived reference MMR array from chem_mods to short-lived moduleeditsrc/chemistry/pp_waccm_tsmlt_mam4/chem_mods.F90editsrc/chemistry/pp_terminator/chem_mods.F90editsrc/chemistry/pp_waccm_ma_mam4/chem_mods.F90editsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/mozart/short_lived_species.F90editsrc/chemistry/pp_trop_mam7/chem_mods.F90editsrc/chemistry/pp_trop_strat_mam4_ts2/chem_mods.F90editsrc/chemistry/pp_trop_strat_mam4_vbsext/chem_mods.F90editsrc/chemistry/pp_waccm_mad/chem_mods.F90editsrc/chemistry/pp_waccm_sc_mam4/chem_mods.F90editsrc/chemistry/pp_trop_mam5/chem_mods.F90editsrc/chemistry/pp_waccm_mad_mam4/chem_mods.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/pp_trop_mam3/chem_mods.F90editsrc/chemistry/pp_none/chem_mods.F90editsrc/chemistry/pp_trop_mozart/chem_mods.F90editsrc/chemistry/mozart/chemistry.F90editsrc/chemistry/pp_waccm_ma_sulfur/chem_mods.F90editsrc/chemistry/pp_trop_mam4/chem_mods.F90editsrc/chemistry/pp_trop_strat_mam4_vbs/chem_mods.F90editsrc/chemistry/pp_waccm_sc/chem_mods.F90editsrc/chemistry/pp_waccm_tsmlt_mam5/chem_mods.F90
- bld/configurecime_config/config_component.xmlbld/config_files/definition.xmla924520cbb4b252e0601bdc3afebfa5ddf09c3c71678206122000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduDelete unused GEOS-Chem build code
Code removal guided by:
1. chem value 'geoschem' is not used. Only 'geoschem_mam4' is used
2. CLM version CPP definition -DCLM[40,45,50] no longer used in GEOS-Chem
3. Only CAM60 is used
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-03-07 09:22:02 -0700a924520cbb4b252e0601bdc3afebfa5ddf09c3c7Delete unused GEOS-Chem build codeeditbld/config_files/definition.xmleditcime_config/config_component.xmleditbld/configure
- src/physics/cam_dev/micro_pumas_cam.F90998213ae3cf402937fbfa7a203d67c62b0c6d0101678210557000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove emulated from if block where values not being set/used
2023-03-07 10:35:57 -0700998213ae3cf402937fbfa7a203d67c62b0c6d010Remove emulated from if block where values not being set/usededitsrc/physics/cam_dev/micro_pumas_cam.F90
- src/chemistry/pp_waccm_ma/chem_mods.F90src/cpl/mct/cam_cpl_indices.F90src/physics/cam/physpkg.F90cime_config/testdefs/testlist_cam.xml66887030c4d2fe284cc21606c3abe1e859ae997e1678216456000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAssorted minor code cleanup; add preliminary GEOS-Chem tests
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-03-07 12:14:16 -070066887030c4d2fe284cc21606c3abe1e859ae997eAssorted minor code cleanup; add preliminary GEOS-Chem testseditsrc/physics/cam/physpkg.F90editsrc/cpl/mct/cam_cpl_indices.F90editsrc/chemistry/pp_waccm_ma/chem_mods.F90editcime_config/testdefs/testlist_cam.xml
- src/chemistry/geoschem/geoschem_emissions_mod.F901dc70198bbcc3a8f195ddeaa22c09826aa35e4891678309005000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comNow emit surface emissions consistently as a 3-D flux term.
This is for consistency with recent updates to HEMCO within CAM-chem where emission fluxes are applied as a 3-D flux, even for surface emissions.
Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu>
2023-03-08 15:56:45 -05001dc70198bbcc3a8f195ddeaa22c09826aa35e489Now emit surface emissions consistently as a 3-D flux term.editsrc/chemistry/geoschem/geoschem_emissions_mod.F90
- src/chemistry/geoschem/chemistry.F901a3fbcff71cc0903289ed87e47a9066d693e5c981679091279000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix SOA mapping indices
2023-03-17 18:14:39 -04001a3fbcff71cc0903289ed87e47a9066d693e5c98Fix SOA mapping indiceseditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/geoschem/chemistry.F90e07c7d67bb217fb71f43c36a50dcbd611082285d1679341102000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix TSKIN field to correct value
2023-03-20 15:38:22 -0400e07c7d67bb217fb71f43c36a50dcbd611082285dFix TSKIN field to correct valueeditsrc/chemistry/geoschem/chemistry.F90
- Externals_CAM.cfgbda2db3104138b810df8a2888c033400d1376ddf1679341701000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate upstream HEMCO-CESM 1.1.3
2023-03-20 15:48:21 -0400bda2db3104138b810df8a2888c033400d1376ddfUpdate upstream HEMCO-CESM 1.1.3editExternals_CAM.cfg
- src/chemistry/geoschem/chemistry.F90935edbb2e2ef27f6d3d7a32c5b9c6a3092786ae61680212307000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix other indices in the reverse direction.
2023-03-30 17:38:27 -0400935edbb2e2ef27f6d3d7a32c5b9c6a3092786ae6Fix other indices in the reverse direction.editsrc/chemistry/geoschem/chemistry.F90
- src/dynamics/mpas/dp_coupling.F90src/dynamics/mpas/driver/cam_mpas_subdriver.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/ionosphere/waccmx/ionosphere_interface.F905d4ef724b6ba4ec76b724a52c84ee5faa58049c41680289004000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edureviewers misc change requests
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: src/dynamics/mpas/dp_coupling.F90
modified: src/dynamics/mpas/driver/cam_mpas_subdriver.F90
modified: src/ionosphere/waccmx/ionosphere_interface.F90
2023-03-31 12:56:44 -06005d4ef724b6ba4ec76b724a52c84ee5faa58049c4reviewers misc change requestseditbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editsrc/ionosphere/waccmx/ionosphere_interface.F90
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xml794d1baf1bcd6c7857bbed3dd81dc11f12407f9c1681842804000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix dry and wet deposition for GEOS-Chem non-gas species.
2023-04-18 14:33:24 -0400794d1baf1bcd6c7857bbed3dd81dc11f12407f9cFix dry and wet deposition for GEOS-Chem non-gas species.editbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xml
- cime_config/testdefs/testlist_cam.xmlsrc/chemistry/geoschem/chemistry.F90a16a4ffbe3c5c10ac844abd56a27dcb52777a0831681855761000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix GEOS-Chem tests by replacing StrSplit in chem_readnl
For some reason the StrSplit routine in GEOS-Chem charpak_mod.F90 has
unexpected behavior when run within the CAM test suite. Replacing it
with basic Fortran fixes the issue reading advected species from
geoschem_config.yml.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-04-18 16:09:21 -0600a16a4ffbe3c5c10ac844abd56a27dcb52777a083Fix GEOS-Chem tests by replacing StrSplit in chem_readnleditsrc/chemistry/geoschem/chemistry.F90editcime_config/testdefs/testlist_cam.xml
- Externals_CAM.cfgsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F909757d92884afacff1faa89e69340d965ae5f90881683131347000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAndrew's mods
2023-05-03 10:29:07 -06009757d92884afacff1faa89e69340d965ae5f9088Andrew's modseditsrc/physics/cam_dev/micro_pumas_cam.F90editExternals_CAM.cfgeditsrc/physics/cam_dev/stochastic_tau_cam.F90editsrc/physics/cam_dev/stochastic_emulated_cam.F90
- src/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90src/physics/cam_dev/micro_pumas_cam.F9025bedf867f597509eeaefe996c4c387284b8284d1683152071000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.educleanup
2023-05-03 16:14:31 -060025bedf867f597509eeaefe996c4c387284b8284dcleanupeditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam_dev/stochastic_tau_cam.F90editsrc/physics/cam_dev/stochastic_emulated_cam.F90
- Externals_CAM.cfgb380608b3f1d45d4aefd60ac2f7593c8bdfe58681683152180000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external
2023-05-03 16:16:20 -0600b380608b3f1d45d4aefd60ac2f7593c8bdfe5868Update PUMAS externaleditExternals_CAM.cfg
- bld/build-namelistsrc/physics/rrtmg/radiation.F90cime_config/usermods_dirs/scam_rrtmgp/user_nl_camcime_config/usermods_dirs/rrtmgp/user_nl_cambld/configuresrc/physics/rrtmgp/slingo.F90bld/config_files/definition.xmlcime_config/usermods_dirs/scam_rrtmgp/shell_commandssrc/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/oldcloud.F90src/physics/rrtmgp/cloud_rad_props.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/rrtmgp/ebert_curry.F90bld/namelist_files/namelist_definition.xmlsrc/physics/cam/modal_aer_opt.F90src/physics/rrtmgp/b_checker.f90src/physics/rrtmgp/rad_solar_var.F90src/physics/rrtmgp/rrtmgp_driver.F90Externals_CAM.cfgsrc/physics/rrtmgp/rrtmgp_inputs.F90cime_config/usermods_dirs/rrtmgp/shell_commands1eccc4920f8dc67b27ba4f7693dd025bdc978f671683305960000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumerge rrtmgp code from brianpm fork
2023-05-05 12:59:20 -04001eccc4920f8dc67b27ba4f7693dd025bdc978f67merge rrtmgp code from brianpm forkaddsrc/physics/rrtmgp/ebert_curry.F90addsrc/physics/rrtmgp/oldcloud.F90editbld/namelist_files/namelist_definition.xmladdsrc/physics/rrtmgp/rrtmgp_driver.F90editsrc/physics/cam/modal_aer_opt.F90addsrc/physics/rrtmgp/slingo.F90editbld/config_files/definition.xmladdsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmg/radiation.F90addcime_config/usermods_dirs/scam_rrtmgp/shell_commandseditbld/build-namelistaddcime_config/usermods_dirs/rrtmgp/shell_commandseditExternals_CAM.cfgeditbld/namelist_files/namelist_defaults_cam.xmladdsrc/physics/rrtmgp/b_checker.f90addcime_config/usermods_dirs/scam_rrtmgp/user_nl_camaddsrc/physics/rrtmgp/mcica_subcol_gen.F90addsrc/physics/rrtmgp/radconstants.F90addsrc/physics/rrtmgp/cloud_rad_props.F90addcime_config/usermods_dirs/rrtmgp/user_nl_camaddsrc/physics/rrtmgp/rad_solar_var.F90editbld/configureaddsrc/physics/rrtmgp/rrtmgp_inputs.F90
- .gitignorec17e5e6b175fa4e1dc092900a38e0ff390a4949b1683834776000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate .gitignore with rrtmgp external
2023-05-11 15:52:56 -0400c17e5e6b175fa4e1dc092900a38e0ff390a4949bupdate .gitignore with rrtmgp externaledit.gitignore
- src/physics/cam/vertical_diffusion.F90src/physics/cam/clubb_intr.F9028bdd26590b364dc8a29cc25bb5c616df802e6da1683901807000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduturn on hb where CLUBB not active when running cam_dev physics
2023-05-12 08:30:07 -060028bdd26590b364dc8a29cc25bb5c616df802e6daturn on hb where CLUBB not active when running cam_dev physicseditsrc/physics/cam/vertical_diffusion.F90editsrc/physics/cam/clubb_intr.F90
- Externals_CAM.cfge761a7401b095f54379522116788ff4e7b84fb7f1684254593000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduget rrtmgp from my fork
2023-05-16 12:29:53 -0400e761a7401b095f54379522116788ff4e7b84fb7fget rrtmgp from my forkeditExternals_CAM.cfg
- src/physics/rrtmgp/radiation.F90430185cf7050adb791d59e513010f0a5fcca834c1684287061000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educomment out non-working memory monitoring code
2023-05-16 21:31:01 -0400430185cf7050adb791d59e513010f0a5fcca834ccomment out non-working memory monitoring codeeditsrc/physics/rrtmgp/radiation.F90
- src/chemistry/geoschem/geoschem_emissions_mod.F90src/chemistry/geoschem/chemistry.F90acfe4267ad7cea29c1afe74ada17153314023bd91684442213000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate lightning emissions code in GEOS-Chem interface for compatibility
These updates are necessary when updating from cam3_6_095 to cam3_6_111
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-05-18 14:36:53 -0600acfe4267ad7cea29c1afe74ada17153314023bd9Update lightning emissions code in GEOS-Chem interface for compatibilityeditsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/geoschem_emissions_mod.F90
- src/control/runtime_opts.F90src/chemistry/aerosol/aerosol_optics_mod.F90src/physics/rrtmg/radiation.F90src/physics/cam/rad_constituents.F90src/physics/cam/aer_rad_props.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F90src/chemistry/aerosol/modal_aerosol_properties_mod.F90src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/aerosol_properties_mod.F90bld/namelist_files/namelist_definition.xmlsrc/physics/cam/modal_aer_opt.F90src/chemistry/aerosol/modal_aerosol_state_mod.F90src/chemistry/aerosol/aerosol_state_mod.F904b74f1b77d57cfed5d7ed027d9de12568963ef571684783620000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduaerosol optics interface for MAM
modified: bld/namelist_files/namelist_definition.xml
modified: src/chemistry/aerosol/aerosol_properties_mod.F90
modified: src/chemistry/aerosol/aerosol_state_mod.F90
modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90
modified: src/chemistry/aerosol/modal_aerosol_state_mod.F90
modified: src/control/runtime_opts.F90
modified: src/physics/cam/aer_rad_props.F90
modified: src/physics/cam/rad_constituents.F90
modified: src/physics/rrtmg/radiation.F90
new file: src/chemistry/aerosol/aerosol_optics_mod.F90
new file: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
new file: src/physics/cam/aerosol_optics_cam.F90
deleted: src/physics/cam/modal_aer_opt.F90
2023-05-22 13:27:00 -06004b74f1b77d57cfed5d7ed027d9de12568963ef57aerosol optics interface for MAMeditsrc/chemistry/aerosol/modal_aerosol_state_mod.F90addsrc/physics/cam/aerosol_optics_cam.F90editsrc/physics/cam/rad_constituents.F90editsrc/physics/cam/aer_rad_props.F90editsrc/chemistry/aerosol/aerosol_state_mod.F90editbld/namelist_files/namelist_definition.xmleditsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90editsrc/control/runtime_opts.F90addsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90addsrc/chemistry/aerosol/aerosol_optics_mod.F90editsrc/chemistry/aerosol/aerosol_properties_mod.F90editsrc/physics/rrtmg/radiation.F90deletesrc/physics/cam/modal_aer_opt.F90
- src/physics/cam/aerosol_optics_cam.F90d8b0896a761e4e80dc6c4ad780d79128b5b9cef01684794866000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educode clean up
modified: src/physics/cam/aerosol_optics_cam.F90
2023-05-22 16:34:26 -0600d8b0896a761e4e80dc6c4ad780d79128b5b9cef0code clean upeditsrc/physics/cam/aerosol_optics_cam.F90
- src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F908d71f9241b87f4048c28f02a1010fbb2c35fe7db1684860182000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinitialize dustvol to zero; corections to add_default fields; minor clean up
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
modified: src/physics/cam/aerosol_optics_cam.F90
2023-05-23 10:43:02 -06008d71f9241b87f4048c28f02a1010fbb2c35fe7dbinitialize dustvol to zero; corections to add_default fields; minor clean upeditsrc/physics/cam/aerosol_optics_cam.F90editsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90
- src/physics/cam/aerosol_optics_cam.F90c07a0eddf64280a6386d29b964ef7389f6936d631684877982000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edutweak to default hist fields
modified: src/physics/cam/aerosol_optics_cam.F90
2023-05-23 15:39:42 -0600c07a0eddf64280a6386d29b964ef7389f6936d63tweak to default hist fieldseditsrc/physics/cam/aerosol_optics_cam.F90
- src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/modal_aerosol_properties_mod.F90src/chemistry/aerosol/aerosol_properties_mod.F902dddb1d99e4592c0acf8d478f1be7e256dc3df871684948280000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse bin names for AOD diags; some cleanup
modified: src/chemistry/aerosol/aerosol_properties_mod.F90
modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90
modified: src/physics/cam/aerosol_optics_cam.F90
2023-05-24 11:11:20 -06002dddb1d99e4592c0acf8d478f1be7e256dc3df87use bin names for AOD diags; some cleanupeditsrc/physics/cam/aerosol_optics_cam.F90editsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90editsrc/chemistry/aerosol/aerosol_properties_mod.F90
- src/physics/cam/aer_rad_props.F9016a723f8657efbc79fca9a10d18077f70df6a33e1685125236000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix cam4 phys issue
modified: src/physics/cam/aer_rad_props.F90
2023-05-26 12:20:36 -060016a723f8657efbc79fca9a10d18077f70df6a33efix cam4 phys issueeditsrc/physics/cam/aer_rad_props.F90
- bld/namelist_files/use_cases/waccm_tsmlt_2000_cam6.xmlbld/namelist_files/use_cases/waccm_tsmlt_2010_cam6.xmlbld/namelist_files/use_cases/sd_trop_strat2_cam6.xmlbld/namelist_files/use_cases/hist_trop_strat_vbsfire_cam6.xmlbld/namelist_files/use_cases/hist_trop_strat_nudged_cam6.xmlbld/namelist_files/use_cases/2000_trop_strat_vbs_cam6.xmlbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xmlbld/namelist_files/use_cases/hist_trop_strat_vbs_cam6.xmlbld/namelist_files/use_cases/sd_trop_strat_vbs_cam6.xmlbld/namelist_files/use_cases/2010_trop_strat_vbs_cam6.xmlsrc/physics/cam/aerosol_optics_cam.F90bld/namelist_files/use_cases/waccm_tsmlt_hist_cam6.xmlbld/namelist_files/use_cases/waccm_tsmlt_1850_cam6.xmlbld/namelist_files/use_cases/hist_trop_strat_vbsext_cam6.xmldeb1531e949a19091df43ec84c72dd704745021b1685139293000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse chem trop lev; correct hist flds in use cases
modified: bld/namelist_files/use_cases/2000_trop_strat_vbs_cam6.xml
modified: bld/namelist_files/use_cases/2010_trop_strat_vbs_cam6.xml
modified: bld/namelist_files/use_cases/hist_trop_strat_nudged_cam6.xml
modified: bld/namelist_files/use_cases/hist_trop_strat_vbs_cam6.xml
modified: bld/namelist_files/use_cases/hist_trop_strat_vbsext_cam6.xml
modified: bld/namelist_files/use_cases/hist_trop_strat_vbsfire_cam6.xml
modified: bld/namelist_files/use_cases/sd_trop_strat2_cam6.xml
modified: bld/namelist_files/use_cases/sd_trop_strat_vbs_cam6.xml
modified: bld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xml
modified: bld/namelist_files/use_cases/waccm_tsmlt_1850_cam6.xml
modified: bld/namelist_files/use_cases/waccm_tsmlt_2000_cam6.xml
modified: bld/namelist_files/use_cases/waccm_tsmlt_2010_cam6.xml
modified: bld/namelist_files/use_cases/waccm_tsmlt_hist_cam6.xml
modified: src/physics/cam/aerosol_optics_cam.F90
2023-05-26 16:14:53 -0600deb1531e949a19091df43ec84c72dd704745021buse chem trop lev; correct hist flds in use caseseditbld/namelist_files/use_cases/waccm_tsmlt_2000_cam6.xmleditbld/namelist_files/use_cases/hist_trop_strat_nudged_cam6.xmleditbld/namelist_files/use_cases/hist_trop_strat_vbs_cam6.xmleditbld/namelist_files/use_cases/waccm_tsmlt_hist_cam6.xmleditbld/namelist_files/use_cases/hist_trop_strat_vbsext_cam6.xmleditbld/namelist_files/use_cases/2010_trop_strat_vbs_cam6.xmleditbld/namelist_files/use_cases/hist_trop_strat_vbsfire_cam6.xmleditbld/namelist_files/use_cases/sd_trop_strat2_cam6.xmleditbld/namelist_files/use_cases/sd_trop_strat_vbs_cam6.xmleditbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xmleditsrc/physics/cam/aerosol_optics_cam.F90editbld/namelist_files/use_cases/waccm_tsmlt_1850_cam6.xmleditbld/namelist_files/use_cases/waccm_tsmlt_2010_cam6.xmleditbld/namelist_files/use_cases/2000_trop_strat_vbs_cam6.xml
- src/chemistry/aerosol/aerosol_properties_mod.F909a1e1c5aa63dd75aa7a57331b37477b17a61cd5c1685463888000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduhygroscopicity in pom phys prop file is suspect -- revert to hard-wired hygroscopicities
modified: src/chemistry/aerosol/aerosol_properties_mod.F90
2023-05-30 10:24:48 -06009a1e1c5aa63dd75aa7a57331b37477b17a61cd5chygroscopicity in pom phys prop file is suspect -- revert to hard-wired hygroscopicitieseditsrc/chemistry/aerosol/aerosol_properties_mod.F90
- src/dynamics/se/dycore/global_norms_mod.F90634d694199e8acedfc33fec58989e38d73d252671687363652000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduonly scale divergence damping if there is scaling to do
2023-06-21 10:07:32 -0600634d694199e8acedfc33fec58989e38d73d25267only scale divergence damping if there is scaling to doeditsrc/dynamics/se/dycore/global_norms_mod.F90
- bld/namelist_files/namelist_definition.xmlbld/build-namelistsrc/physics/cam/vertical_diffusion.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F903b795d66cd163175f6fbc342570698bdf79740651687389938000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange to namelist (instead of keying off cam_dev in code)
2023-06-21 17:25:38 -06003b795d66cd163175f6fbc342570698bdf7974065change to namelist (instead of keying off cam_dev in code)editbld/namelist_files/namelist_definition.xmleditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/aerosol_optics_cam.F90bd71dc4f35ddb9c95344b804775e67cc62d5eed41687798630000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduremoved references to carma aerosol objects
modified: src/physics/cam/aerosol_optics_cam.F90
2023-06-26 10:57:10 -0600bd71dc4f35ddb9c95344b804775e67cc62d5eed4removed references to carma aerosol objectseditsrc/physics/cam/aerosol_optics_cam.F90
- src/physics/cam/aerosol_optics_cam.F906d588186ea2a3b89f44b9d768d9b4a7d5bbc0da21687800987000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumisc clean up
modified: src/physics/cam/aerosol_optics_cam.F90
2023-06-26 11:36:27 -06006d588186ea2a3b89f44b9d768d9b4a7d5bbc0da2misc clean upeditsrc/physics/cam/aerosol_optics_cam.F90
- bld/build-namelistsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90bld/namelist_files/namelist_definition.xmlsrc/physics/cam/modal_aer_opt.F90Externals_CAM.cfgsrc/physics/cam_dev/stochastic_emulated_cam.F90d48690cf5d506386c536fea6f1beb9f38d7f6c961687990010000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd namelist for kbarf file
2023-06-28 16:06:50 -0600d48690cf5d506386c536fea6f1beb9f38d7f6c96Add namelist for kbarf fileeditsrc/physics/cam_dev/stochastic_tau_cam.F90editbld/build-namelisteditbld/namelist_files/namelist_definition.xmleditExternals_CAM.cfgeditsrc/physics/cam_dev/stochastic_emulated_cam.F90editsrc/physics/cam/modal_aer_opt.F90editsrc/physics/cam_dev/micro_pumas_cam.F90
- Externals_CAM.cfg39ecca5c38259987426d3e2f5219d76a05195ec81687990375000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external
2023-06-28 16:12:55 -060039ecca5c38259987426d3e2f5219d76a05195ec8Update PUMAS externaleditExternals_CAM.cfg
- src/physics/cam/vertical_diffusion.F90src/physics/cam/hb_diff.F90a4d70ab4dbc6ee15f3132758b8fe18553cf16f1f1687991444000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edunew implementation only applying free atmosphere HB (not PBL part)
Thanks for Thomas Toniazzo
2023-06-28 16:30:44 -0600a4d70ab4dbc6ee15f3132758b8fe18553cf16f1fnew implementation only applying free atmosphere HB (not PBL part)editsrc/physics/cam/hb_diff.F90editsrc/physics/cam/vertical_diffusion.F90
- Externals_CAM.cfg617d2a7954302b5969ee09a7bc84388ca3c30b101688069769000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS
2023-06-29 14:16:09 -0600617d2a7954302b5969ee09a7bc84388ca3c30b10Update PUMASeditExternals_CAM.cfg
- Externals_CAM.cfg90f7eb7a061832e95152bb1ad335fbcce81536b31688077040000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS to fix failing cam_dev test
2023-06-29 16:17:20 -060090f7eb7a061832e95152bb1ad335fbcce81536b3Update PUMAS to fix failing cam_dev testeditExternals_CAM.cfg
- src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/b_checker.f90src/physics/rrtmgp/rad_solar_var.F90src/physics/cam/modal_aer_opt.F90src/physics/rrtmgp/radiation.F907acbb785ec6a2175d75935d354ac2f9594c40b8a1688566326000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduuse parameters for nswbands, nlwbands
2023-07-05 10:12:06 -04007acbb785ec6a2175d75935d354ac2f9594c40b8ause parameters for nswbands, nlwbandsdeletesrc/physics/rrtmgp/b_checker.f90editsrc/physics/rrtmgp/rad_solar_var.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/cam/modal_aer_opt.F90
- src/physics/rrtmgp/rrtmgp_inputs.F903022b4c8484e864d312b8093b8702a374ec51db81688569283000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove references to b_checker
2023-07-05 11:01:23 -04003022b4c8484e864d312b8093b8702a374ec51db8remove references to b_checkereditsrc/physics/rrtmgp/rrtmgp_inputs.F90
- src/physics/cam/vertical_diffusion.F90bld/namelist_files/namelist_defaults_cam.xmle06b6128d6ed7c0ccbaa834712ea7fb9fa1c5ab11688577521000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comrevert ntop_eddy_pres to prev -5 values and allow clubb_do_hb_above to be active for cam6 as well as cam_dev
2023-07-05 11:18:41 -0600e06b6128d6ed7c0ccbaa834712ea7fb9fa1c5ab1revert ntop_eddy_pres to prev -5 values and allow clubb_do_hb_above to be active for cam6 as well as cam_deveditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/vertical_diffusion.F90
- doc/ChangeLogsrc/physics/cam/vertical_diffusion.F907c64f41a2d8b8490369de69aa3790b7ba50b74541688582186000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comforgot to add that I updated to cam6_3_117 in last commit, this commit added changelog boilerplate for this PR and fixed comment in vertical_diffusion (adding this change to cam6 and cam_dev)
2023-07-05 12:36:26 -06007c64f41a2d8b8490369de69aa3790b7ba50b7454forgot to add that I updated to cam6_3_117 in last commit, this commit added changelog boilerplate for this PR and fixed comment in vertical_diffusion (adding this change to cam6 and cam_dev)editsrc/physics/cam/vertical_diffusion.F90editdoc/ChangeLog
- src/physics/cam/vertical_diffusion.F90src/physics/cam/clubb_intr.F9011e8dab08f93d7c572863c350fead50a27bab24a1688592275000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comrevert check for add kvh to pbuf, older code worked fine and seemed more straight forward, changed if check on cam6/cam_dev to use clubb_do_hb_above to allow namelist_defaults to handle what physics work with new clubb hb variable
2023-07-05 15:24:35 -060011e8dab08f93d7c572863c350fead50a27bab24arevert check for add kvh to pbuf, older code worked fine and seemed more straight forward, changed if check on cam6/cam_dev to use clubb_do_hb_above to allow namelist_defaults to handle what physics work with new clubb hb variableeditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F90b2b5433dd57508a2d3b589a18f531122af19d0411688686298000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educode review changes
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
modified: src/physics/cam/aerosol_optics_cam.F90
2023-07-06 17:31:38 -0600b2b5433dd57508a2d3b589a18f531122af19d041code review changeseditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90editsrc/physics/cam/aerosol_optics_cam.F90
- src/chemistry/aerosol/refractive_aerosol_optics_mod.F9019ebc39888d81ae002623e2ca61a4389d677be5a1688747777000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduminor misc code review changes
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
2023-07-07 10:36:17 -060019ebc39888d81ae002623e2ca61a4389d677be5aminor misc code review changeseditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90
- Externals_CAM.cfg3bee7e48e25fdbfe2cc0832846fa6ef224a5ab241688773712000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external
2023-07-07 17:48:32 -06003bee7e48e25fdbfe2cc0832846fa6ef224a5ab24Update PUMAS externaleditExternals_CAM.cfg
- Externals_CAM.cfg3cfcce1fc9009fd4b587f269626c0f5f6fa192111688776581000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PUMAS external
2023-07-07 18:36:21 -06003cfcce1fc9009fd4b587f269626c0f5f6fa19211Update PUMAS externaleditExternals_CAM.cfg
- bld/namelist_files/namelist_definition.xmlExternals_CAM.cfgd36c56db9e8f4543104ef3ed3a1c09e9c6f22d821689027107000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd 'never' as a testing selection for warm_rain
2023-07-10 16:11:47 -0600d36c56db9e8f4543104ef3ed3a1c09e9c6f22d82Add 'never' as a testing selection for warm_raineditbld/namelist_files/namelist_definition.xmleditExternals_CAM.cfg
- bld/namelist_files/namelist_defaults_cam.xml589df635640f938acf2ec41eca6545560965279c1689112814000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comUntil we figure out cam6 fw2000X failure only allow hb scheme to be active for cam_dev, backed off from using cam6-hb with this commit
2023-07-11 16:00:14 -0600589df635640f938acf2ec41eca6545560965279cUntil we figure out cam6 fw2000X failure only allow hb scheme to be active for cam_dev, backed off from using cam6-hb with this commiteditbld/namelist_files/namelist_defaults_cam.xml
- doc/ChangeLogd2be6f0e8db2e6f9debad7dff0470de8121c615a1689114196000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate ChangeLog with current test failures
2023-07-11 16:23:16 -0600d2be6f0e8db2e6f9debad7dff0470de8121c615aupdate ChangeLog with current test failureseditdoc/ChangeLog
- bld/namelist_files/namelist_definition.xml0c71c033bc6aa84ac70efe210c67f31634152be11689370204000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRemove never from warm_rain options
2023-07-14 15:30:04 -06000c71c033bc6aa84ac70efe210c67f31634152be1Remove never from warm_rain optionseditbld/namelist_files/namelist_definition.xml
- Externals_CAM.cfg3b41e34585915ee42f1a43d10e9c0f079a3001bb1689636051000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate Externals_CAM.cfg to point to PUMAS tag
2023-07-17 17:20:51 -06003b41e34585915ee42f1a43d10e9c0f079a3001bbUpdate Externals_CAM.cfg to point to PUMAS tageditExternals_CAM.cfg
- src/dynamics/se/dycore/prim_advance_mod.F90b8993783f1d8b2c5958210ebb5ef04c7f43c88ae1689713262000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comremove duplicate timer calls for prim_advanc_exp
2023-07-18 14:47:42 -0600b8993783f1d8b2c5958210ebb5ef04c7f43c88aeremove duplicate timer calls for prim_advanc_expeditsrc/dynamics/se/dycore/prim_advance_mod.F90
- src/utils/table_interp_mod.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F90daddde9888e5aac4f324db15caae32135a6e2aef1689714489000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse table_interp utility module
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
new file: src/utils/table_interp_mod.F90
2023-07-18 15:08:09 -0600daddde9888e5aac4f324db15caae32135a6e2aefuse table_interp utility moduleeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90addsrc/utils/table_interp_mod.F90
- bld/configuresrc/physics/rrtmgp/radiation.F90bld/namelist_files/use_cases/1850_cam5.xmlsrc/chemistry/utils/solar_data.F90src/physics/rrtmg/radiation.F90fd417ba4c9ec127a70de6fb9f63605d7d300e00a1689808620000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd configure option rrtmgp_smp; misc cleanup
2023-07-19 19:17:00 -0400fd417ba4c9ec127a70de6fb9f63605d7d300e00aadd configure option rrtmgp_smp; misc cleanupeditsrc/chemistry/utils/solar_data.F90editbld/configureeditsrc/physics/rrtmgp/radiation.F90addbld/namelist_files/use_cases/1850_cam5.xmleditsrc/physics/rrtmg/radiation.F90
- src/utils/table_interp_mod.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F9029e641391035d0e2bc83d2260ee1e5df2a2808311689969475000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse updated table_interp_mod
modified: src/physics/cam/modal_aer_opt.F90
modified: src/utils/table_interp_mod.F90
2023-07-21 13:57:55 -060029e641391035d0e2bc83d2260ee1e5df2a280831use updated table_interp_modeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90editsrc/utils/table_interp_mod.F90
- bld/namelist_files/namelist_definition.xmlsrc/physics/cam_dev/micro_pumas_cam.F9038d34a0c1f8131f6aa4541bdb4aa636fb0804eee1690322983000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdditional cleanup
2023-07-25 16:09:43 -060038d34a0c1f8131f6aa4541bdb4aa636fb0804eeeAdditional cleanupeditsrc/physics/cam_dev/micro_pumas_cam.F90editbld/namelist_files/namelist_definition.xml
- src/chemistry/geoschem/chemistry.F90f71850c17ca06cbf48f1a4aa18bb1c34695b08a51690559223000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduPost-merge update to add pbuf argument to GEOS-Chem chem_emissions
This update enables GEOS-Chem compsets to compile following update
to a more recent version of CAM.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-07-28 09:47:03 -0600f71850c17ca06cbf48f1a4aa18bb1c34695b08a5Post-merge update to add pbuf argument to GEOS-Chem chem_emissionseditsrc/chemistry/geoschem/chemistry.F90
- src/chemistry/aerosol/aerosol_properties_mod.F90src/chemistry/aerosol/modal_aerosol_properties_mod.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F904754394b18fdc2619f8498ca00260cc8e4240c9c1690565935000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edusome of Jesse's change requests
modified: src/chemistry/aerosol/aerosol_properties_mod.F90
modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
2023-07-28 11:38:55 -06004754394b18fdc2619f8498ca00260cc8e4240c9csome of Jesse's change requestseditsrc/chemistry/aerosol/aerosol_properties_mod.F90editsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90editsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90
- bld/namelist_files/use_cases/2010_geoschem.xmlcime_config/config_component.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlcime_config/config_compsets.xmlbld/namelist_files/use_cases/hist_geoschem.xml5eb55a137df149328a8cc52a4cd580b263aa5ec11690579055000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdates to use HEMCO for GEOS-Chem compset
These updates are necessary following changes to how HEMCO is integrated
into CESM.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-07-28 15:17:35 -06005eb55a137df149328a8cc52a4cd580b263aa5ec1Updates to use HEMCO for GEOS-Chem compseteditbld/namelist_files/use_cases/sd_geoschem.xmleditcime_config/config_component.xmleditcime_config/config_compsets.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xml
- cime_config/config_component.xmlbld/build-namelist4563541e7f2fd32e1b11ef43b3c2da98198601911690579070000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduMinor cleanup changes
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-07-28 15:17:50 -06004563541e7f2fd32e1b11ef43b3c2da9819860191Minor cleanup changeseditbld/build-namelisteditcime_config/config_component.xml
- bld/configuresrc/physics/rrtmgp/radiation.F908d315350292ae1bd0bbc263ee436be8a174a7a8c1690583412000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educhange rrtmgp_smp to rrtmgp_gpu; fix SW TOA output vars
2023-07-28 18:30:12 -04008d315350292ae1bd0bbc263ee436be8a174a7a8cchange rrtmgp_smp to rrtmgp_gpu; fix SW TOA output varseditsrc/physics/rrtmgp/radiation.F90editbld/configure
- src/utils/table_interp_mod.F9054ebce566c0bb7b8f6a24e9c285fdd67c93db3781690824560000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edur8 correction
modified: src/utils/table_interp_mod.F90
2023-07-31 11:29:20 -060054ebce566c0bb7b8f6a24e9c285fdd67c93db378r8 correctioneditsrc/utils/table_interp_mod.F90
- src/utils/table_interp_mod.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F90cd63ce68752e667dfbc41e2f487414f81ccf7b4b1690992591000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edudo not extrapolate beyond the edges of the table
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
modified: src/utils/table_interp_mod.F90
2023-08-02 10:09:51 -0600cd63ce68752e667dfbc41e2f487414f81ccf7b4bdo not extrapolate beyond the edges of the tableeditsrc/utils/table_interp_mod.F90editsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90
- src/utils/table_interp_mod.F90741d5360eba956f048823fefaddec654646c58e41691079536000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimprove docs and index finder
modified: src/utils/table_interp_mod.F90
2023-08-03 10:18:56 -0600741d5360eba956f048823fefaddec654646c58e4improve docs and index findereditsrc/utils/table_interp_mod.F90
- src/chemistry/aerosol/modal_aerosol_state_mod.F907d054bf616db2ba78c8c16688aa4809b3048e5951691098598000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurh2odens parameter
modified: src/chemistry/aerosol/modal_aerosol_state_mod.F90
2023-08-03 15:36:38 -06007d054bf616db2ba78c8c16688aa4809b3048e595rh2odens parametereditsrc/chemistry/aerosol/modal_aerosol_state_mod.F90
- doc/ChangeLogsrc/physics/cam/vertical_diffusion.F90src/physics/cam/hb_diff.F90c4603eeabe06601e935041dcfc5f1432bcbd2c601691625884000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comPR review mods
2023-08-09 18:04:44 -0600c4603eeabe06601e935041dcfc5f1432bcbd2c60PR review modseditsrc/physics/cam/vertical_diffusion.F90editsrc/physics/cam/hb_diff.F90editdoc/ChangeLog
- src/physics/cam/vertical_diffusion.F909f1aad6b7361deea7f9d58d22ca593952fd8b1831691683992000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfix bug caught in PR - erroneous replacement of cam_dev with clubb_do_hb_above
2023-08-10 10:13:12 -06009f1aad6b7361deea7f9d58d22ca593952fd8b183fix bug caught in PR - erroneous replacement of cam_dev with clubb_do_hb_aboveeditsrc/physics/cam/vertical_diffusion.F90
- Externals.cfgsrc/chemistry/utils/tracer_data.F90cime_config/testdefs/testlist_cam.xmlcime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xmlcime_config/config_compsets.xml6532cf6530bde32b893641002c553271e3d896221691705836000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduFix memory issue, default PE layout for FMTHIST
modified: Externals.cfg
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: cime_config/config_compsets.xml
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
modified: src/chemistry/utils/tracer_data.F90
2023-08-10 16:17:16 -06006532cf6530bde32b893641002c553271e3d89622Fix memory issue, default PE layout for FMTHISTeditcime_config/config_compsets.xmleditcime_config/testdefs/testlist_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmleditExternals.cfgeditcime_config/config_pes.xmleditsrc/chemistry/utils/tracer_data.F90
- src/physics/cam/aerosol_optics_cam.F90acf694ea78d956edc5497cdf2cecb8cb85119a481691774958000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduminor corrections
modified: src/physics/cam/aerosol_optics_cam.F90
2023-08-11 11:29:18 -0600acf694ea78d956edc5497cdf2cecb8cb85119a48minor correctionseditsrc/physics/cam/aerosol_optics_cam.F90
- src/physics/rrtmgp/radiation.F90d46aa4b29d32c3c49aa34872053d1ec1e976a8c21692041684000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd diagnostic output for fluxes on the RRTMGP grid
2023-08-14 15:34:44 -0400d46aa4b29d32c3c49aa34872053d1ec1e976a8c2add diagnostic output for fluxes on the RRTMGP grideditsrc/physics/rrtmgp/radiation.F90
- Externals_CAM.cfg42e49768edde02fed6208e1bf6216e83820f0fe21692109006000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate rrtmgp external to use local_fix01
2023-08-15 10:16:46 -040042e49768edde02fed6208e1bf6216e83820f0fe2update rrtmgp external to use local_fix01editExternals_CAM.cfg
- src/physics/cam/vertical_diffusion.F90src/physics/cam/hb_diff.F9020bd7a989eeca3299188b493a80f45100218222d1692139539000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor fixes
2023-08-15 16:45:39 -060020bd7a989eeca3299188b493a80f45100218222dminor fixeseditsrc/physics/cam/hb_diff.F90editsrc/physics/cam/vertical_diffusion.F90
- src/physics/rrtmgp/rrtmgp_driver.F9019b908333bdc0ca75fd9631a62535c636d3c4a1c1692192713000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix in rrtmgp_driver.F90 for gpu
2023-08-16 09:31:53 -040019b908333bdc0ca75fd9631a62535c636d3c4a1cfix in rrtmgp_driver.F90 for gpueditsrc/physics/rrtmgp/rrtmgp_driver.F90
- cime_config/config_pes.xmlsrc/physics/cam_dev/micro_pumas_cam.F906b4b303207d896960125cb946ae2362996ca80791692204669000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduZero bergso above trop_lev; better PE layouts for ERP tests
modified: cime_config/config_pes.xml
modified: src/physics/cam_dev/micro_pumas_cam.F90
2023-08-16 10:51:09 -06006b4b303207d896960125cb946ae2362996ca8079Zero bergso above trop_lev; better PE layouts for ERP testseditcime_config/config_pes.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90
- cime_config/testdefs/testlist_cam.xmlcfdb2ae6114cf667b177c33364f545662bfe44561692206000000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdjustments to regression tests
modified: cime_config/testdefs/testlist_cam.xml
2023-08-16 11:13:20 -0600cfdb2ae6114cf667b177c33364f545662bfe4456Adjustments to regression testseditcime_config/testdefs/testlist_cam.xml
- src/dynamics/se/dyn_comp.F90eb970c539f251cb35b9fe6c4da34653d093c1b511692221730000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurestrict log message to masterproc
modified: src/dynamics/se/dyn_comp.F90
2023-08-16 15:35:30 -0600eb970c539f251cb35b9fe6c4da34653d093c1b51restrict log message to masterproceditsrc/dynamics/se/dyn_comp.F90
- test/system/test_driver.shf66733c281ef23126c4326951d34cf0e398e018f1692221806000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduAdd derecho support.
2023-08-16 15:36:46 -0600f66733c281ef23126c4326951d34cf0e398e018fAdd derecho support.edittest/system/test_driver.sh
- bld/namelist_files/namelist_defaults_cam.xml8b2c82451b36598276c18c493ecb27c4edc175a01692289399000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edugroup default namelist vars by name
modified: bld/namelist_files/namelist_defaults_cam.xml
2023-08-17 10:23:19 -06008b2c82451b36598276c18c493ecb27c4edc175a0group default namelist vars by nameeditbld/namelist_files/namelist_defaults_cam.xml
- bld/namelist_files/namelist_definition.xmlsrc/physics/cam/vertical_diffusion.F90src/physics/cam/hb_diff.F905ef18fca15ae9c3433a723ac78333e0c983a92b71692336187000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.commixup with getting some PR changes pushed
2023-08-17 23:23:07 -06005ef18fca15ae9c3433a723ac78333e0c983a92b7mixup with getting some PR changes pushededitsrc/physics/cam/hb_diff.F90editbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/vertical_diffusion.F90src/dynamics/se/dycore/global_norms_mod.F905dd75616ed15ead0a0ae9691af3e072df7da47911692625090000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR requested changes from Cheryl
2023-08-21 07:38:10 -06005dd75616ed15ead0a0ae9691af3e072df7da4791PR requested changes from Cheryleditsrc/physics/cam/vertical_diffusion.F90editsrc/dynamics/se/dycore/global_norms_mod.F90
- src/physics/cam/geopotential.F9010c0c80ad9b8ba265a617f8dd78b6f66fd4b5e1b1692657626000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix serious bug for WACCM-x
2023-08-21 16:40:26 -060010c0c80ad9b8ba265a617f8dd78b6f66fd4b5e1bfix serious bug for WACCM-xeditsrc/physics/cam/geopotential.F90
- cime_config/testdefs/testlist_cam.xmlsrc/dynamics/se/dyn_comp.F9021c4f6f12ee2c27a26e651a7d7d0c737edc3e9681692715174000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduminor fixes
modified: cime_config/testdefs/testlist_cam.xml
modified: src/dynamics/se/dyn_comp.F90
2023-08-22 08:39:34 -060021c4f6f12ee2c27a26e651a7d7d0c737edc3e968minor fixeseditcime_config/testdefs/testlist_cam.xmleditsrc/dynamics/se/dyn_comp.F90
- src/physics/cam/phys_control.F90bld/build-namelistbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90bld/namelist_files/namelist_definition.xmldoc/ChangeLogsrc/physics/cam/vertical_diffusion.F90bbf69c3df78ee0e87ffdf1e2d72d47cac5abb58c1692739280000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comPR related mods - HB now on for cam6 (previously just cam_dev), Changelog testing and description updates, rename clubb_do_hb_above to do_hb_above_clubb, hb control namelist variable moved to phys_control
2023-08-22 15:21:20 -0600bbf69c3df78ee0e87ffdf1e2d72d47cac5abb58cPR related mods - HB now on for cam6 (previously just cam_dev), Changelog testing and description updates, rename clubb_do_hb_above to do_hb_above_clubb, hb control namelist variable moved to phys_controleditsrc/physics/cam/vertical_diffusion.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/clubb_intr.F90editbld/namelist_files/namelist_definition.xmleditbld/build-namelisteditdoc/ChangeLogeditsrc/physics/cam/phys_control.F90
- src/physics/cam/phys_control.F90src/physics/cam/vertical_diffusion.F90src/physics/cam/clubb_intr.F9039b621f799c2afc0420b379cd0fe7eeea62d1f9f1692742850000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comcleanup move of do_hb_clubb_above
2023-08-22 16:20:50 -060039b621f799c2afc0420b379cd0fe7eeea62d1f9fcleanup move of do_hb_clubb_aboveeditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/vertical_diffusion.F90editsrc/physics/cam/phys_control.F90
- doc/ChangeLogsrc/physics/cam/clubb_intr.F9053eaa2decf59c9175e1901a39a0529b7c1dfe9f71692743926000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfixed syntax error in PR mods and added physics_control as changed file to ChangeLog
2023-08-22 16:38:46 -060053eaa2decf59c9175e1901a39a0529b7c1dfe9f7fixed syntax error in PR mods and added physics_control as changed file to ChangeLogeditdoc/ChangeLogeditsrc/physics/cam/clubb_intr.F90
- doc/ChangeLogbde9720fab59b8f1bf939be208418b785b7241a41692803616000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft
2023-08-23 09:13:36 -0600bde9720fab59b8f1bf939be208418b785b7241a4ChangeLog drafteditdoc/ChangeLog
- doc/ChangeLogf39a204a6d36f619359db091645f520e4eaa7d4a1692819647000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-08-23 13:40:47 -0600f39a204a6d36f619359db091645f520e4eaa7d4aChangeLog updateeditdoc/ChangeLog
- doc/ChangeLog7289b7a75a15b89f69df142826cf232668cfb8ef1692820671000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-08-23 13:57:51 -06007289b7a75a15b89f69df142826cf232668cfb8efChangeLog updateeditdoc/ChangeLog
- src/physics/cam_dev/micro_pumas_cam.F90a9d5d30c5e3f8e85f6ab353a9909daaa2382b7591692820733000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduChange needed to build with most recent updates
2023-08-23 13:58:53 -0600a9d5d30c5e3f8e85f6ab353a9909daaa2382b759Change needed to build with most recent updateseditsrc/physics/cam_dev/micro_pumas_cam.F90
- doc/ChangeLog781349a84deda86fcca92b409b37833bd43daf581692820823000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-08-23 14:00:23 -0600781349a84deda86fcca92b409b37833bd43daf58ChangeLog updateeditdoc/ChangeLog
- src/physics/rrtmgp/radiation.F906b36f66af961304bcfa4340152de28e25e9936321692898518000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educleanup a couple of unused vars
2023-08-24 13:35:18 -04006b36f66af961304bcfa4340152de28e25e993632cleanup a couple of unused varseditsrc/physics/rrtmgp/radiation.F90
- src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/aerosol_state_mod.F90src/chemistry/aerosol/refractive_aerosol_optics_mod.F908b4138f0ed4665460cb191546cd5e7a4100529a21692913417000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduSome of Matt's change requests
modified: src/chemistry/aerosol/aerosol_state_mod.F90
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
modified: src/physics/cam/aerosol_optics_cam.F90
2023-08-24 15:43:37 -06008b4138f0ed4665460cb191546cd5e7a4100529a2Some of Matt's change requestseditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90editsrc/physics/cam/aerosol_optics_cam.F90editsrc/chemistry/aerosol/aerosol_state_mod.F90
- src/chemistry/aerosol/modal_aerosol_state_mod.F90src/physics/cam/aerosol_optics_cam.F90src/chemistry/aerosol/aerosol_properties_mod.F90src/chemistry/aerosol/aerosol_state_mod.F9015e832ce38de64b525aa9ee04eab8a38d6fcf8e51693231627000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumore code reviewers requests
modified: src/chemistry/aerosol/aerosol_properties_mod.F90
modified: src/chemistry/aerosol/aerosol_state_mod.F90
modified: src/chemistry/aerosol/modal_aerosol_state_mod.F90
modified: src/physics/cam/aerosol_optics_cam.F90
2023-08-28 08:07:07 -060015e832ce38de64b525aa9ee04eab8a38d6fcf8e5more code reviewers requestseditsrc/chemistry/aerosol/modal_aerosol_state_mod.F90editsrc/chemistry/aerosol/aerosol_state_mod.F90editsrc/physics/cam/aerosol_optics_cam.F90editsrc/chemistry/aerosol/aerosol_properties_mod.F90
- src/chemistry/aerosol/modal_aerosol_state_mod.F90b085542e8a1b129c9cd9fb6e1f6f29f39fdcb2021693242241000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduspecify cloud-borne mmr dimensions in comment
modified: src/chemistry/aerosol/modal_aerosol_state_mod.F90
2023-08-28 11:04:01 -0600b085542e8a1b129c9cd9fb6e1f6f29f39fdcb202specify cloud-borne mmr dimensions in commenteditsrc/chemistry/aerosol/modal_aerosol_state_mod.F90
- src/chemistry/aerosol/refractive_aerosol_optics_mod.F90cbe401a6a8714ca368e83de685476ec11eca9abf1693318191000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimpose floor for radsurf
modified: src/chemistry/aerosol/refractive_aerosol_optics_mod.F90
2023-08-29 08:09:51 -0600cbe401a6a8714ca368e83de685476ec11eca9abfimpose floor for radsurfeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90
- src/physics/cam/aerosol_optics_cam.F90f3b788e2752c61147d56d35d9d80d007796b62af1693322351000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurestore flag_xyfill for some optics diagnostics
modified: src/physics/cam/aerosol_optics_cam.F90
2023-08-29 09:19:11 -0600f3b788e2752c61147d56d35d9d80d007796b62afrestore flag_xyfill for some optics diagnosticseditsrc/physics/cam/aerosol_optics_cam.F90
- doc/ChangeLogfe7aeaa1cb7d93b5f7cb163fd097e98edbf9fc841693334650000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangeLog
2023-08-29 12:44:10 -0600fe7aeaa1cb7d93b5f7cb163fd097e98edbf9fc84update ChangeLogeditdoc/ChangeLog
- doc/ChangeLogaeece27795d2ae71a48f84cd2b07cf1643e4ee7d1693337712000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-08-29 13:35:12 -0600aeece27795d2ae71a48f84cd2b07cf1643e4ee7dChangeLog updateeditdoc/ChangeLog
- src/control/cam_comp.F9038d51b7131c07e22e68df085114566895568b39c1693342661000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove HEMCO from src/control/cam_comp.F90
This update is needed to run with the latest cam_development which
already had the update. The old code came in with the recent merge.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-08-29 14:57:41 -060038d51b7131c07e22e68df085114566895568b39cRemove HEMCO from src/control/cam_comp.F90editsrc/control/cam_comp.F90
- cime_config/config_compsets.xml8796376f28d658c948dc67dcac8bd0a413e769f81693342765000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix how HEMCO is specified in GEOS-Chem compset configuration
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-08-29 14:59:25 -06008796376f28d658c948dc67dcac8bd0a413e769f8Fix how HEMCO is specified in GEOS-Chem compset configurationeditcime_config/config_compsets.xml
- bld/build-namelist750cf521fb1807b3ecba933688bf3ea69b58b1981693343519000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse HEMCO config files in Buildconf/camconf when running with GEOS-Chem
GEOS-Chem expects to use HEMCO configuration files that are included in
the GEOS-Chem repository. Those files get copied into Buildconf/camconf
during the first build of any GEOS-Chem compset. If not using GEOS-Chem
then HEMCO files are read from the input data path specified as namelist
defaults. This update adds a modifier to change the hemco_config_file and
hemco_diagn_file namelist parameters when building the namelist for a
GEOS-Chem compset to be simply HEMCO_Config.rc and HEMCO_Diagn.rc, with no
absolute path specified.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-08-29 15:11:59 -0600750cf521fb1807b3ecba933688bf3ea69b58b198Use HEMCO config files in Buildconf/camconf when running with GEOS-Chemeditbld/build-namelist
- src/dynamics/mpas/dp_coupling.F90src/dynamics/se/dp_coupling.F901025b12dfac45399b6504179c6b410ff442241351693423488000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix bug for species dependent air (WACCM-x)
2023-08-30 13:24:48 -06001025b12dfac45399b6504179c6b410ff44224135fix bug for species dependent air (WACCM-x)editsrc/dynamics/mpas/dp_coupling.F90editsrc/dynamics/se/dp_coupling.F90
- bld/namelist_files/namelist_definition.xmlbld/build-namelistsrc/dynamics/se/dycore/control_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/prim_advance_mod.F90bld/namelist_files/namelist_defaults_cam.xml88ecf21b5870b5ba36c5f6660b7f9fb73a3358801693437423000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educode for changing PGF formulation in SE
2023-08-30 17:17:03 -060088ecf21b5870b5ba36c5f6660b7f9fb73a335880code for changing PGF formulation in SEeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/se/dycore/prim_advance_mod.F90editbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dyn_comp.F90editbld/build-namelisteditsrc/dynamics/se/dycore/control_mod.F90
- bld/namelist_files/namelist_defaults_cam.xmlea1d0da8c8abb49ea10f9b61b41c776ae1f84ee11693509114000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduAdd 60 and 30km ncdata files for analytic ICs w/o topography
These files have been generated using MPAS-A init-atmosphere core for
CAM-MPAS grids (case 13) based on standard 60 and 30km MPAS meshes.
Also add default values for mpasa60 and mpasa30 hgrids. Needed default
values for mpas_dt and mpas_len_disp since they are affected by hgrids.
2023-08-31 13:11:54 -0600ea1d0da8c8abb49ea10f9b61b41c776ae1f84ee1Add 60 and 30km ncdata files for analytic ICs w/o topographyeditbld/namelist_files/namelist_defaults_cam.xml
- doc/ChangeLog3f7cfa489e103769355519646b401ba7a17aa1361693509508000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate ChangeLog
Aug28 - missing aux_cam test results, date, and CAM tag (not assigned
yet).
2023-08-31 13:18:28 -06003f7cfa489e103769355519646b401ba7a17aa136Update ChangeLogeditdoc/ChangeLog
- src/physics/cam/phys_prop.F90src/physics/rrtmg/slingo.F90src/physics/rrtmg/oldcloud.F90src/physics/simple/radconstants.F90src/physics/camrt/radconstants.F90src/physics/cam/rad_constituents.F90src/physics/rrtmg/ebert_curry.F90src/physics/cam/aer_rad_props.F90src/physics/rrtmgp/slingo.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmg/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/cloud_rad_props.F90src/physics/rrtmgp/oldcloud.F90src/physics/rrtmgp/rad_solar_var.F90src/physics/rrtmgp/ebert_curry.F90src/physics/rrtmgp/rrtmgp_inputs.F90f57e02726a0736902d2de7aeb6489f656a29effe1693612686000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educleanup solar forcing and gas_concs init; bugfix in rrtmgp_inputs
2023-09-01 19:58:06 -0400f57e02726a0736902d2de7aeb6489f656a29effecleanup solar forcing and gas_concs init; bugfix in rrtmgp_inputsdeletesrc/physics/rrtmgp/rad_solar_var.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmg/oldcloud.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/cam/aer_rad_props.F90editsrc/physics/cam/rad_constituents.F90editsrc/physics/rrtmgp/cloud_rad_props.F90editsrc/physics/rrtmgp/oldcloud.F90editsrc/physics/rrtmgp/ebert_curry.F90editsrc/physics/rrtmg/cloud_rad_props.F90editsrc/physics/simple/radconstants.F90editsrc/physics/rrtmg/ebert_curry.F90editsrc/physics/rrtmg/slingo.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/cam/phys_prop.F90editsrc/physics/rrtmgp/slingo.F90editsrc/physics/camrt/radconstants.F90editsrc/physics/rrtmg/radconstants.F90
- src/physics/rrtmgp/radiation.F90e53e7077e167ce2cb9ac7fea35b9186a816f44661693841735000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumerge cam6_3_125 mod to rrtmg/radiation.F90 to rrtmgp
2023-09-04 11:35:35 -0400e53e7077e167ce2cb9ac7fea35b9186a816f4466merge cam6_3_125 mod to rrtmg/radiation.F90 to rrtmgpeditsrc/physics/rrtmgp/radiation.F90
- src/physics/cam/physpkg.F90src/physics/cam/aerosol_optics_cam.F90d8edb8d8ebb9531cc3d30c2e8d145fcf53df75491693873517000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumods for compatibility of rrtmgp with cam6_3_125
2023-09-04 20:25:17 -0400d8edb8d8ebb9531cc3d30c2e8d145fcf53df7549mods for compatibility of rrtmgp with cam6_3_125editsrc/physics/cam/aerosol_optics_cam.F90editsrc/physics/cam/physpkg.F90
- src/chemistry/aerosol/refractive_aerosol_optics_mod.F90bld/build-namelistaaf66d969cf144b2c6203df8512c70bc43a875181693924722000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix rrtmgp build-namelist mod; add missing _r8 to aerosol code
2023-09-05 10:38:42 -0400aaf66d969cf144b2c6203df8512c70bc43a87518fix rrtmgp build-namelist mod; add missing _r8 to aerosol codeeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90editbld/build-namelist
- src/dynamics/se/dycore/prim_advance_mod.F909c8f088235a097f5faa3f401c71b6fd591172be91693947412000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufit bug in previous commit
2023-09-05 14:56:52 -06009c8f088235a097f5faa3f401c71b6fd591172be9fit bug in previous commiteditsrc/dynamics/se/dycore/prim_advance_mod.F90
- src/dynamics/se/dycore/prim_advance_mod.F9015cefdaee0c2dfc0d787a1988078613ef30f85e81693952976000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edubug in WACCM-x formulation of pgf
2023-09-05 16:29:36 -060015cefdaee0c2dfc0d787a1988078613ef30f85e8bug in WACCM-x formulation of pgfeditsrc/dynamics/se/dycore/prim_advance_mod.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F904ced2a81221a7f041058ca314fb1ea4a2339fa731694005145000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove extra ktopcam, ktoprad indices
2023-09-06 08:59:05 -04004ced2a81221a7f041058ca314fb1ea4a2339fa73remove extra ktopcam, ktoprad indiceseditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/radconstants.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F909d433323e6ba563f824715e7218e750541bf63531694011515000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove unused arg band2gpt
2023-09-06 10:45:15 -04009d433323e6ba563f824715e7218e750541bf6353remove unused arg band2gpteditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- bld/configurebld/build-namelistdae6502d255057b071e658d3b2d8c25b83cb23441694015941000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unused code in configure and build-namelist
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-09-06 11:59:01 -0400dae6502d255057b071e658d3b2d8c25b83cb2344Remove unused code in configure and build-namelisteditbld/build-namelisteditbld/configure
- src/chemistry/geoschem/geoschem_history_mod.F90src/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/chemistry.F90src/chemistry/geoschem/geoschem_emissions_mod.F90e1a6fd2460a6f78dff174379954df78034ed7d6b1694016231000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse shr_kind_cl in GEOS-Chem character declarations; remove SPMD cpp defs
This commit also removes some unused lines of code.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-09-06 12:03:51 -0400e1a6fd2460a6f78dff174379954df78034ed7d6bUse shr_kind_cl in GEOS-Chem character declarations; remove SPMD cpp defseditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/geoschem/geoschem_emissions_mod.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/geoschem_history_mod.F90
- src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F900d2ca48e7927fedc61ca6c0c2c4650db4165ae911694018834000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor set_wavenumber_bands
2023-09-06 12:47:14 -04000d2ca48e7927fedc61ca6c0c2c4650db4165ae91refactor set_wavenumber_bandseditsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90
- doc/ChangeLogc95209b5dfd690db4d32041616131d8bc676537a1694021135000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate ChangeLog
Add tag, date, and regression test results. Imply cam6_3_125 as test
baseline by removing reference to cam6_3_111.
2023-09-06 11:25:35 -0600c95209b5dfd690db4d32041616131d8bc676537aUpdate ChangeLogeditdoc/ChangeLog
- src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F902b3abb82d81b1aa0ff5fedf50193a1a4c4c6456c1694033773000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor rrtmgp_set_state
2023-09-06 16:56:13 -04002b3abb82d81b1aa0ff5fedf50193a1a4c4c6456crefactor rrtmgp_set_stateeditsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90
- src/chemistry/geoschem/geoschem_history_mod.F90src/control/runtime_opts.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/chemistry.F90src/control/cam_comp.F90src/chemistry/geoschem/geoschem_emissions_mod.F908b3dff50761b8c8cae8a8b6e38df1b4c1c5e6bb91694035707000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAlways use ONLY keyword in USE statements
This commit also includes reorganizing of all GEOS-Chem interface
USE statements so that they are split into three categories:
CAM modules, GEOS-Chem interface modules in CAM, and GEOS-Chem
modules. They are alphabetized within each section.
An extraneous hemco_interface declaration and new line are also removed.
2023-09-06 15:28:27 -06008b3dff50761b8c8cae8a8b6e38df1b4c1c5e6bb9Always use ONLY keyword in USE statementseditsrc/control/cam_comp.F90editsrc/chemistry/geoschem/geoschem_emissions_mod.F90editsrc/chemistry/geoschem/geoschem_history_mod.F90editsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/control/runtime_opts.F90
- src/physics/rrtmgp/radiation.F90a889343ee9d423b1a70f2b110c8477cde6c019cb1694097966000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor modified_cloud_fraction
2023-09-07 10:46:06 -0400a889343ee9d423b1a70f2b110c8477cde6c019cbrefactor modified_cloud_fractioneditsrc/physics/rrtmgp/radiation.F90
- src/dynamics/se/dycore/control_mod.F90f2a301d97b3b51e494e76d1ba4fbb5b4f783987e1694098536000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/control_mod.F90
Set default for pgf_formulation
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2023-09-07 08:55:36 -0600f2a301d97b3b51e494e76d1ba4fbb5b4f783987eUpdate src/dynamics/se/dycore/control_mod.F90editsrc/dynamics/se/dycore/control_mod.F90
- src/physics/rrtmgp/radiation.F904752c0ae278f28271e83e1964d2546af93feb0271694101949000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edubug fix - pmid_day arg should not have levels reversed
2023-09-07 11:52:29 -04004752c0ae278f28271e83e1964d2546af93feb027bug fix - pmid_day arg should not have levels reversededitsrc/physics/rrtmgp/radiation.F90
- src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/mozart/mo_chem_utls.F90src/chemistry/geoschem/chemistry.F90ac9e5471bed4e9a0015ab2b59a51dba5b698bbea1694104277000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.edurename optional arg compare_uppercase; use spmd_utils and mpi_bcast
2023-09-07 10:31:17 -0600ac9e5471bed4e9a0015ab2b59a51dba5b698bbearename optional arg compare_uppercase; use spmd_utils and mpi_bcasteditsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/mozart/mo_chem_utls.F90editsrc/chemistry/geoschem/chemistry.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F903c9ce1423972cce4d223ee04a8d9e069ee2c023d1694126918000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor and bug fix in rad_gas_get_vmr
2023-09-07 18:48:38 -04003c9ce1423972cce4d223ee04a8d9e069ee2c023drefactor and bug fix in rad_gas_get_vmreditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90
- src/chemistry/modal_aero/modal_aero_data.F90src/chemistry/geoschem/chemistry.F909418375f794170cb6d98947252ebd19db82c2bc31694138556000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange modal aerosol species name retrieval method
2023-09-07 20:02:36 -06009418375f794170cb6d98947252ebd19db82c2bc3Change modal aerosol species name retrieval methodeditsrc/chemistry/modal_aero/modal_aero_data.F90editsrc/chemistry/geoschem/chemistry.F90
- bld/namelist_files/namelist_definition.xmlsrc/dynamics/se/dycore/prim_advance_mod.F904a404258f78d187cedc68ac44f54eaa0d452cb951694211200000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educode changes from code review
2023-09-08 16:13:20 -06004a404258f78d187cedc68ac44f54eaa0d452cb95code changes from code revieweditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dycore/prim_advance_mod.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90f7e28725897a4575b9069478993f2cd08d9bb9f51694295525000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor rrtmgp_set_aer_sw
2023-09-09 17:38:45 -0400f7e28725897a4575b9069478993f2cd08d9bb9f5refactor rrtmgp_set_aer_sweditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90
- cime_config/testdefs/testlist_cam.xml26ca7f4a3d4ad730c83d75c84e52c1f0649db95f1694437980000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdd comment and wallclock time to new CARMA tests
modified: cime_config/testdefs/testlist_cam.xml
2023-09-11 07:13:00 -060026ca7f4a3d4ad730c83d75c84e52c1f0649db95fAdd comment and wallclock time to new CARMA testseditcime_config/testdefs/testlist_cam.xml
- src/physics/cam/vertical_diffusion.F908baa7c3a1e86e387f0566d38539be9bace05639f1694438143000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/physics/cam/vertical_diffusion.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2023-09-11 07:15:43 -06008baa7c3a1e86e387f0566d38539be9bace05639fUpdate src/physics/cam/vertical_diffusion.F90editsrc/physics/cam/vertical_diffusion.F90
- bld/namelist_files/namelist_definition.xmlc2d7b36caa7fc1862789f81958b628a236e83ee41694438263000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix namelist definition
2023-09-11 07:17:43 -0600c2d7b36caa7fc1862789f81958b628a236e83ee4fix namelist definitioneditbld/namelist_files/namelist_definition.xml
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cambld/namelist_files/namelist_defaults_cam.xml7f5c1152902b2e04004e2c960f05dd85152186a41694453808000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdates to include spun up waccm IC file and allow default value of se_nsplit
2023-09-11 11:36:48 -06007f5c1152902b2e04004e2c960f05dd85152186a4updates to include spun up waccm IC file and allow default value of se_nspliteditcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cameditbld/namelist_files/namelist_defaults_cam.xml
- doc/ChangeLog3f2dde032e56b4e0b4b90e90a4c252249976f9811694461517000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comChangeLog update
2023-09-11 13:45:17 -06003f2dde032e56b4e0b4b90e90a4c252249976f981ChangeLog updateeditdoc/ChangeLog
- src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F9079196ad0c19946cfd0d54ef0ba9c51510eb2ba4f1694525671000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor sw flux calculation
2023-09-12 09:34:31 -040079196ad0c19946cfd0d54ef0ba9c51510eb2ba4frefactor sw flux calculationeditsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90
- doc/ChangeLog54ba97d721cd330e76d9279bc3071197936cc4491694548462000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate ChangeLog with regression test results
2023-09-12 13:54:22 -060054ba97d721cd330e76d9279bc3071197936cc449update ChangeLog with regression test resultseditdoc/ChangeLog
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandscime_config/testdefs/testlist_cam.xmlsrc/physics/cam/radiation_data.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/shell_commandsbld/configurecime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_clmsrc/physics/cam/cloud_diagnostics.F90cime_config/SystemTests/mgp.pybld/config_files/definition.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_clmsrc/physics/cam/microp_driver.F90bld/namelist_files/namelist_definition.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmbld/build-namelistcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_camsrc/physics/cam/physpkg.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_camsrc/physics/cam/convect_shallow.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/shell_commandssrc/physics/cam/phys_control.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commands1655bebb0f06b6371b521d8f22e8fdf1962d10171694550210000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdded aux_pumas test suite, added first attempt at making pumas a valid configure and namelist option for microphysics. Added a test to make sure pumas and mg3 give the same results and it only passes when pumas is set to mg3 in configure right now. More work to do.
2023-09-12 14:23:30 -06001655bebb0f06b6371b521d8f22e8fdf1962d1017Added aux_pumas test suite, added first attempt at making pumas a valid configure and namelist option for microphysics. Added a test to make sure pumas and mg3 give the same results and it only passes when pumas is set to mg3 in configure right now. More work to do.editsrc/physics/cam/radiation_data.F90editsrc/physics/cam/cloud_diagnostics.F90editcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_clmeditsrc/physics/cam/physpkg.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/shell_commandseditbld/namelist_files/namelist_definition.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_clmdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_cameditbld/configureaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_clmdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandseditbld/build-namelistdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/convect_shallow.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_camaddcime_config/SystemTests/mgp.pyeditsrc/physics/cam/phys_control.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/shell_commandseditsrc/physics/cam/microp_driver.F90editbld/config_files/definition.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/shell_commands
- src/chemistry/aerosol/refractive_aerosol_optics_mod.F90544fdad534f68cca65178bbaf914e010129569291694561349000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix r8 issue in refractive_aerosol_optics_mod
2023-09-12 17:29:09 -0600544fdad534f68cca65178bbaf914e01012956929fix r8 issue in refractive_aerosol_optics_modeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90
- src/physics/rrtmgp/radiation.F907cd5b1a8b7cf9e8bf6ab1011f0a5a469a7d8f6f71694610435000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor setting tsi to fix bug
2023-09-13 09:07:15 -04007cd5b1a8b7cf9e8bf6ab1011f0a5a469a7d8f6f7refactor setting tsi to fix bugeditsrc/physics/rrtmgp/radiation.F90
- bld/namelist_files/namelist_defaults_cam.xmlb06cf016b098c5f06bf15d17126082e67e7f4dd01694612017000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduCorrect default IC file for QPWmaC6 on ne5np4 grid
modified: bld/namelist_files/namelist_defaults_cam.xml
2023-09-13 07:33:37 -0600b06cf016b098c5f06bf15d17126082e67e7f4dd0Correct default IC file for QPWmaC6 on ne5np4 grideditbld/namelist_files/namelist_defaults_cam.xml
- doc/ChangeLog7e9b1c68cce48ba6bec49e4aa0e4764ba722b6db1694617227000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft
2023-09-13 09:00:27 -06007e9b1c68cce48ba6bec49e4aa0e4764ba722b6dbChangeLog drafteditdoc/ChangeLog
- src/physics/cam_dev/micro_pumas_cam.F903c9ca023bfa625c0bc698a833e44fa43d46a1a311694623646000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAndrew's changes for more output
2023-09-13 10:47:26 -06003c9ca023bfa625c0bc698a833e44fa43d46a1a31Andrew's changes for more outputeditsrc/physics/cam_dev/micro_pumas_cam.F90
- src/physics/cam_dev/physpkg.F904645cfea0618c8a0a5dc1213fb7fada4939350f71694623680000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFound one more MG check
2023-09-13 10:48:00 -06004645cfea0618c8a0a5dc1213fb7fada4939350f7Found one more MG checkeditsrc/physics/cam_dev/physpkg.F90
- doc/ChangeLoge85b90641c7951fc0cc0b74d630df90dfc889d2a1694632812000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-09-13 13:20:12 -0600e85b90641c7951fc0cc0b74d630df90dfc889d2aChangeLog updateeditdoc/ChangeLog
- doc/ChangeLoge91b687a2b514d2461d016702314f572a6da2a671694633806000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-09-13 13:36:46 -0600e91b687a2b514d2461d016702314f572a6da2a67ChangeLog updateeditdoc/ChangeLog
- src/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/cloud_rad_props.F90b1806227d680187c7f1d953161bf0df50c4a20721694795611000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumisc cleanup
2023-09-15 12:33:31 -0400b1806227d680187c7f1d953161bf0df50c4a2072misc cleanupeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/cloud_rad_props.F90editsrc/physics/rrtmg/cloud_rad_props.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- src/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmg/slingo.F90src/physics/rrtmg/oldcloud.F90src/physics/rrtmgp/oldcloud.F90src/physics/rrtmgp/cloud_rad_props.F90src/physics/cam/ebert_curry.F90src/physics/cam/slingo.F90src/physics/cam/oldcloud.F90src/physics/rrtmgp/ebert_curry.F90src/physics/rrtmg/ebert_curry.F90src/physics/cam/cloud_rad_props.F90src/physics/rrtmgp/slingo.F90afbeae33a1af0d5b17c394c734b0c696e823a9831694796707000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumove files shared by rrtmg and rrtmgp to physics/cam
2023-09-15 12:51:47 -0400afbeae33a1af0d5b17c394c734b0c696e823a983move files shared by rrtmg and rrtmgp to physics/camaddsrc/physics/cam/cloud_rad_props.F90deletesrc/physics/rrtmgp/oldcloud.F90deletesrc/physics/rrtmgp/slingo.F90addsrc/physics/cam/oldcloud.F90deletesrc/physics/rrtmgp/cloud_rad_props.F90deletesrc/physics/rrtmg/slingo.F90deletesrc/physics/rrtmgp/ebert_curry.F90deletesrc/physics/rrtmg/oldcloud.F90deletesrc/physics/rrtmg/cloud_rad_props.F90addsrc/physics/cam/slingo.F90addsrc/physics/cam/ebert_curry.F90deletesrc/physics/rrtmg/ebert_curry.F90
- src/physics/cam_dev/micro_pumas_cam.F90ef2a91ca9317b61d855a7740170f9a2996f1d8891694811304000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall change to get new outputs working with older code
2023-09-15 14:55:04 -0600ef2a91ca9317b61d855a7740170f9a2996f1d889Small change to get new outputs working with older codeeditsrc/physics/cam_dev/micro_pumas_cam.F90
- src/physics/simple/radconstants.F90src/physics/cam/slingo.F90src/physics/cam/ebert_curry.F904b1dc77d314600c1eb22099cdec0db695dc17e1b1694993947000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edubugfix for simple models; cleanup in cloud optics code
2023-09-17 19:39:07 -04004b1dc77d314600c1eb22099cdec0db695dc17e1bbugfix for simple models; cleanup in cloud optics codeeditsrc/physics/cam/ebert_curry.F90editsrc/physics/simple/radconstants.F90editsrc/physics/cam/slingo.F90
- cime_config/testdefs/testlist_cam.xml7dac4af8aba45f87a569b31fc8cbc5d8ed3c7c8d1695077775000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding tests for Derecho as well
2023-09-18 16:56:15 -06007dac4af8aba45f87a569b31fc8cbc5d8ed3c7c8dAdding tests for Derecho as welleditcime_config/testdefs/testlist_cam.xml
- src/physics/cam/slingo.F90src/physics/cam/oldcloud.F90src/physics/rrtmgp/radiation.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry.F901a047e0f4eae8341df80097d633c28740aa6ef041695159363000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumore cleanup in cloud optics code
2023-09-19 17:36:03 -04001a047e0f4eae8341df80097d633c28740aa6ef04more cleanup in cloud optics codeeditsrc/physics/cam/ebert_curry.F90editsrc/physics/cam/oldcloud.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/cam/cloud_rad_props.F90editsrc/physics/cam/slingo.F90
- src/dynamics/fv/dp_coupling.F909b3d553ede7a40eda4b30b0145590e91cc24239b1695226109000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comconvert wet species to dry before calling cam_thermo_dry_air_update
2023-09-20 10:08:29 -06009b3d553ede7a40eda4b30b0145590e91cc24239bconvert wet species to dry before calling cam_thermo_dry_air_updateeditsrc/dynamics/fv/dp_coupling.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90749f90a3c07d95ea5b50b24dd19aaee6d6ee993f1695228866000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor setting cloud_sw object
2023-09-20 12:54:26 -0400749f90a3c07d95ea5b50b24dd19aaee6d6ee993frefactor setting cloud_sw objecteditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- test/system/test_driver.sh84fa58e7e9d6d5618fdd8d6f331e0d87c5f734941695232518000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduAdd non-zero exit code to check for baselines.
2023-09-20 11:55:18 -060084fa58e7e9d6d5618fdd8d6f331e0d87c5f73494Add non-zero exit code to check for baselines.edittest/system/test_driver.sh
- Externals.cfg5fde6371a62a863a118c327e59bc273b01e752f41695237241000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduBring in test_driver and externals
2023-09-20 13:14:01 -06005fde6371a62a863a118c327e59bc273b01e752f4Bring in test_driver and externalseditExternals.cfg
- Externals_CAM.cfg91b1959e31c630ebd256f0c58fba4abca795cdba1695243893000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate HEMCO external
2023-09-20 15:04:53 -060091b1959e31c630ebd256f0c58fba4abca795cdbaUpdate HEMCO externaleditExternals_CAM.cfg
- Externals_CAM.cfgc1f6899f612d5f98a3cfc61f2543238deb441e971695249844000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate Externals to new PUMAS tag
2023-09-20 16:44:04 -0600c1f6899f612d5f98a3cfc61f2543238deb441e97Update Externals to new PUMAS tageditExternals_CAM.cfg
- test/system/test_driver.shdbaca4140c020683bf74779e90d481f84f609eae1695250498000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduUse wallclock_limit for derecho walltime.
2023-09-20 16:54:58 -0600dbaca4140c020683bf74779e90d481f84f609eaeUse wallclock_limit for derecho walltime.edittest/system/test_driver.sh
- test/system/test_driver.sh70108b1e67366a7d4468bead7e48384909a7373b1695250723000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduUse wallclock_limit for cheyenne and casper walltime.
2023-09-20 16:58:43 -060070108b1e67366a7d4468bead7e48384909a7373bUse wallclock_limit for cheyenne and casper walltime.edittest/system/test_driver.sh
- test/system/test_driver.sh37c6f28b9a8a7cf08d98c8ab8f3ae47edb02e5261695317391000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing character
2023-09-21 11:29:51 -060037c6f28b9a8a7cf08d98c8ab8f3ae47edb02e526Add missing characteredittest/system/test_driver.sh
- cime_config/config_tests.xml73cd17fb1c9e2d5ffcc3efb8caff4b8d700d02d01695322705000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdd definition for MGP test
2023-09-21 12:58:25 -060073cd17fb1c9e2d5ffcc3efb8caff4b8d700d02d0Add definition for MGP testeditcime_config/config_tests.xml
- Externals_CAM.cfgce5989c6005bec71d0037fbc02a2e7d22c9910b91695330946000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix typo in HEMCO tagname
2023-09-21 15:15:46 -0600ce5989c6005bec71d0037fbc02a2e7d22c9910b9Fix typo in HEMCO tagnameeditExternals_CAM.cfg
- test/system/test_driver.sh48199e4d411474858be6f7342c5aa9a640ea3f621695333076000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove python from derecho submits
2023-09-21 15:51:16 -060048199e4d411474858be6f7342c5aa9a640ea3f62Remove python from derecho submitsedittest/system/test_driver.sh
- src/control/cam_history.F90src/control/cam_history_support.F90src/utils/cam_grid_support.F90src/control/sat_hist.F90src/control/filenames.F908d0754e79f07a61bdff8506fea60805e16eee3091695365690000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduseparate accumulated and instantaneous fields
2023-09-22 00:54:50 -06008d0754e79f07a61bdff8506fea60805e16eee309separate accumulated and instantaneous fieldseditsrc/control/cam_history.F90editsrc/control/sat_hist.F90editsrc/control/filenames.F90editsrc/control/cam_history_support.F90editsrc/utils/cam_grid_support.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F904d069dc67f086f08da08482502c75481432212ca1695394004000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove old cloud optics; refactor setting cloud_sw & aer_sw objects
2023-09-22 10:46:44 -04004d069dc67f086f08da08482502c75481432212caremove old cloud optics; refactor setting cloud_sw & aer_sw objectseditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- doc/ChangeLoga1474d95162d7bc3a0c1d4012d6919b3db18fbe51695405127000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduPreliminary ChangeLog
2023-09-22 11:52:07 -0600a1474d95162d7bc3a0c1d4012d6919b3db18fbe5Preliminary ChangeLogeditdoc/ChangeLog
- bld/namelist_files/namelist_definition.xmlc7b9a2cbd9313b14464a82438b850441fd3741b71695413183000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix issue #690
2023-09-22 14:06:23 -0600c7b9a2cbd9313b14464a82438b850441fd3741b7fix issue #690editbld/namelist_files/namelist_definition.xml
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90b7f0039da88eac6cbdaf1483be5bee0cced067601695657661000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor SW treatment of no daylight columns in chunk
2023-09-25 12:01:01 -0400b7f0039da88eac6cbdaf1483be5bee0cced06760refactor SW treatment of no daylight columns in chunkeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- src/dynamics/fv/dp_coupling.F90ee679ef9ef2ae878dd49c9bd6998281002d289b41695748908000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove characters in comment
2023-09-26 11:21:48 -0600ee679ef9ef2ae878dd49c9bd6998281002d289b4remove characters in commenteditsrc/dynamics/fv/dp_coupling.F90
- src/physics/spcam/crmclouds_camaerosols.F90bld/build-namelistsrc/physics/cam/zm_microphysics.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90bld/configurebld/namelist_files/namelist_definition.xmlsrc/physics/cam/zm_conv.F90Externals_CAM.cfgsrc/physics/cam/convect_shallow.F90src/physics/cam/macrop_driver.F90src/physics/cam/zm_conv_intr.F908f232dc6a5ba8cc9be7d7a0c0dede0cae10081621695771695000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove ZM microphysics and cleanup for CCPP conversion
2023-09-26 17:41:35 -06008f232dc6a5ba8cc9be7d7a0c0dede0cae1008162Remove ZM microphysics and cleanup for CCPP conversioneditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/spcam/crmclouds_camaerosols.F90editsrc/physics/cam/clubb_intr.F90editbld/namelist_files/namelist_definition.xmleditbld/build-namelisteditbld/configureeditsrc/physics/cam/macrop_driver.F90editExternals_CAM.cfgeditsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90deletesrc/physics/cam/zm_conv.F90deletesrc/physics/cam/zm_microphysics.F90
- cime_config/buildlib5af0cde5b9813a62f1853a4846bb1c28260b3eef1695829495000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate buildlib to allow cesm to build fms for shared use. Previously cam was responsible for building libfms
2023-09-27 09:44:55 -06005af0cde5b9813a62f1853a4846bb1c28260b3eefupdate buildlib to allow cesm to build fms for shared use. Previously cam was responsible for building libfmseditcime_config/buildlib
- doc/ChangeLogcime_config/buildlib74484a948d4afae82b87b4cc8228246a355bb2a51695830708000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduminor text updates
2023-09-27 10:05:08 -060074484a948d4afae82b87b4cc8228246a355bb2a5minor text updateseditdoc/ChangeLogeditcime_config/buildlib
- cime_config/buildlibc80928df23743d198d0881a5199886e1405bc1901695837267000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfix err msg wording for missing libfms library.
2023-09-27 11:54:27 -0600c80928df23743d198d0881a5199886e1405bc190fix err msg wording for missing libfms library.editcime_config/buildlib
- bld/configure0c2a5c5302a3844647396eae4278b92b125373ae1695845899000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall perl bug fix in configure
2023-09-27 14:18:19 -06000c2a5c5302a3844647396eae4278b92b125373aeSmall perl bug fix in configureeditbld/configure
- cime_config/buildlib2d6fbd75c3497bd0bb0efbe9ccb660a72e7f6af41695846912000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing if statement
2023-09-27 14:35:12 -06002d6fbd75c3497bd0bb0efbe9ccb660a72e7f6af4Add missing if statementeditcime_config/buildlib
- cime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_cpl5d6c51f1c03f1619d16b7d323dc6c2d2ef3965ba1695855175000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove test which tested zmconv_micro
2023-09-27 16:52:55 -06005d6c51f1c03f1619d16b7d323dc6c2d2ef3965baRemove test which tested zmconv_microdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_clmdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/shell_commandseditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_cpl
- cime_config/buildlibb6c1e7a0f3ee8e75e4b81a99b18bfcc362122acf1695923339000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix for ERP test of fvcubed dycore
2023-09-28 11:48:59 -0600b6c1e7a0f3ee8e75e4b81a99b18bfcc362122acffix for ERP test of fvcubed dycoreeditcime_config/buildlib
- src/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/rrtmgp_driver.F90src/physics/rrtmgp/rrtmgp_inputs.F90b499cc41773f8845f700f68cf2389d58a44846971695930888000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor LW cloud and aerosol optics, flux calc
2023-09-28 15:54:48 -0400b499cc41773f8845f700f68cf2389d58a4484697refactor LW cloud and aerosol optics, flux calceditsrc/physics/rrtmgp/mcica_subcol_gen.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90deletesrc/physics/rrtmgp/rrtmgp_driver.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F9049726ef7faba6cc63f255342855ac5732e5d79c71695942674000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumisc cleanup; restore putting Q*dp in pbuf for energy conservation
2023-09-28 19:11:14 -040049726ef7faba6cc63f255342855ac5732e5d79c7misc cleanup; restore putting Q*dp in pbuf for energy conservationeditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90
- src/physics/rrtmgp/radiation.F9074bce491fec934f14d09b6d1e11d24e2eeeb251a1696011776000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove some debug output; add error check routine
2023-09-29 14:22:56 -040074bce491fec934f14d09b6d1e11d24e2eeeb251aremove some debug output; add error check routineeditsrc/physics/rrtmgp/radiation.F90
- src/utils/ccpp_constituent_prop_mod.F90src/physics/simple/kessler_cam.F90Externals_CAM.cfgsrc/physics/simple/physpkg.F90src/physics/simple/held_suarez_cam.F90src/physics/cam/ref_pres.F9022d781423baf9c36f4e4286474b056c99e8a0d351696016510000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd code mods needed to work with the latest version of the 'atmospheric_physics' external.
2023-09-29 13:41:50 -060022d781423baf9c36f4e4286474b056c99e8a0d35Add code mods needed to work with the latest version of the 'atmospheric_physics' external.editsrc/physics/simple/kessler_cam.F90addsrc/utils/ccpp_constituent_prop_mod.F90editsrc/physics/simple/physpkg.F90editsrc/physics/cam/ref_pres.F90editExternals_CAM.cfgeditsrc/physics/simple/held_suarez_cam.F90
- src/control/runtime_opts.F90src/chemistry/mozart/mo_chem_utls.F90src/chemistry/mozart/short_lived_species.F90d37e70a4486796ce9f1f70ad4f1022b5a0670ccb1696016633000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUnused code deletion and update setting short-lived species fieldnames
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-09-29 13:43:53 -0600d37e70a4486796ce9f1f70ad4f1022b5a0670ccbUnused code deletion and update setting short-lived species fieldnameseditsrc/chemistry/mozart/mo_chem_utls.F90editsrc/chemistry/mozart/short_lived_species.F90editsrc/control/runtime_opts.F90
- src/utils/ccpp_constituent_prop_mod.F90src/physics/cam_dev/physpkg.F90src/physics/simple/physpkg.F90src/physics/cam/physpkg.F90src/physics/cam/geopotential.F909b1a538be6d03df47379b3878379296d0024fae11696016941000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduReplace 'geopotential_t' calculation with CCPP version for SE and MPAS.
2023-09-29 13:49:01 -06009b1a538be6d03df47379b3878379296d0024fae1Replace 'geopotential_t' calculation with CCPP version for SE and MPAS.editsrc/physics/cam/physpkg.F90editsrc/utils/ccpp_constituent_prop_mod.F90editsrc/physics/simple/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editsrc/physics/cam/geopotential.F90
- src/physics/cam/geopotential.F90src/utils/ccpp_constituent_prop_mod.F90675b6e59575d4f827fa3279f9a73b5e458dc6e3e1696017012000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix bugs needed to work with CCPP geopotential_t routine.
2023-09-29 13:50:12 -0600675b6e59575d4f827fa3279f9a73b5e458dc6e3eFix bugs needed to work with CCPP geopotential_t routine.editsrc/physics/cam/geopotential.F90editsrc/utils/ccpp_constituent_prop_mod.F90
- src/utils/ccpp_constituent_prop_mod.F90628e516d858dd939ae748e0b0ad0c230a9d166dc1696017014000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd 'water_species' property to fake const object.
2023-09-29 13:50:14 -0600628e516d858dd939ae748e0b0ad0c230a9d166dcAdd 'water_species' property to fake const object.editsrc/utils/ccpp_constituent_prop_mod.F90
- src/dynamics/se/dp_coupling.F9015e603da58e2bcd306bc07608eaa1d0651d4cdab1696017014000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduReplace SE dry static energy calculation with equivalent CCPP scheme.
2023-09-29 13:50:14 -060015e603da58e2bcd306bc07608eaa1d0651d4cdabReplace SE dry static energy calculation with equivalent CCPP scheme.editsrc/dynamics/se/dp_coupling.F90
- cime_config/buildlib769f2d03aacc8cd4a292f17bd90f43dc80b4321f1696022347000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comprint out missing file
2023-09-29 15:19:07 -0600769f2d03aacc8cd4a292f17bd90f43dc80b4321fprint out missing fileeditcime_config/buildlib
- bld/configureExternals_CAM.cfgbld/build-namelist.gitignorebld/namelist_files/namelist_defaults_cam.xmlddda4164a241ba2cd2651c0a9496fc66175a31781696034648000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate build for changes to rte-rrtmgp develop branch
2023-09-29 20:44:08 -0400ddda4164a241ba2cd2651c0a9496fc66175a3178update build for changes to rte-rrtmgp develop brancheditbld/build-namelisteditbld/configureedit.gitignoreeditbld/namelist_files/namelist_defaults_cam.xmleditExternals_CAM.cfg
- src/utils/ccpp_constituent_prop_mod.F90src/dynamics/se/dp_coupling.F90dd8b5368b33be31858b0dbb923bda58ead8d709e1696262560000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix bugs found during manual testing.
2023-10-02 10:02:40 -0600dd8b5368b33be31858b0dbb923bda58ead8d709eFix bugs found during manual testing.editsrc/utils/ccpp_constituent_prop_mod.F90editsrc/dynamics/se/dp_coupling.F90
- src/control/cam_history.F90src/utils/cam_grid_support.F906191558bc55d5241f730488eecb6412d63eab5341696286647000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix issue with multiple grids with the same attribute(s)
2023-10-02 16:44:07 -06006191558bc55d5241f730488eecb6412d63eab534fix issue with multiple grids with the same attribute(s)editsrc/utils/cam_grid_support.F90editsrc/control/cam_history.F90
- src/control/cam_history.F90src/utils/cam_grid_support.F9096ea50241ec08f01af6454688a23647165750e971696395019000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix bug in lat lon coords, append file type to user-supplied filespec
2023-10-03 22:50:19 -060096ea50241ec08f01af6454688a23647165750e97fix bug in lat lon coords, append file type to user-supplied filespeceditsrc/control/cam_history.F90editsrc/utils/cam_grid_support.F90
- doc/ChangeLog212a84249d07f87231c4b3735bb1764615ab479f1696434573000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdated ChangeLog for cam6_3_129
2023-10-04 09:49:33 -0600212a84249d07f87231c4b3735bb1764615ab479fUpdated ChangeLog for cam6_3_129editdoc/ChangeLog
- cime_config/cam.case_setupd43c4e840ababc03928976e22b774c3225de01e51696448807000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd script to copy GEOS-Chem config files during case setup
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-04 13:46:47 -0600d43c4e840ababc03928976e22b774c3225de01e5Add script to copy GEOS-Chem config files during case setupaddcime_config/cam.case_setup
- bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml675afd0aa21b328d12aef5cd085142000c66b4e11696527847000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate deposition input file path used for GEOS-Chem
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-05 11:44:07 -0600675afd0aa21b328d12aef5cd085142000c66b4e1Update deposition input file path used for GEOS-Chemeditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xml
- cime_config/buildnml4e552bbf4c8bfe7f82d069973ba46a64ea61dc451696527877000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduCopy GEOS-Chem configuration files from caseroot to run directory
Previously files were copied from camconf.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-05 11:44:37 -06004e552bbf4c8bfe7f82d069973ba46a64ea61dc45Copy GEOS-Chem configuration files from caseroot to run directoryeditcime_config/buildnml
- src/physics/cam_dev/micro_pumas_cam.F909344b93f53d0ab0fa5b5bb01d170043bf9d387171696544928000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding new diag history fields and updating some diag names
2023-10-05 16:28:48 -06009344b93f53d0ab0fa5b5bb01d170043bf9d38717Adding new diag history fields and updating some diag nameseditsrc/physics/cam_dev/micro_pumas_cam.F90
- Externals_CAM.cfg98b1883bfdb88e6478edeecf2bce6cc29597d18f1696545537000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate Externals for new new pumas tag
2023-10-05 16:38:57 -060098b1883bfdb88e6478edeecf2bce6cc29597d18fUpdate Externals for new new pumas tageditExternals_CAM.cfg
- test/system/archive_baseline.sh72027cdf25510e08354287168ac571a8291ad1f11696555617000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfixes issue #893 to archive derecho baselines - missed addition from last PR
2023-10-05 19:26:57 -060072027cdf25510e08354287168ac571a8291ad1f1fixes issue #893 to archive derecho baselines - missed addition from last PRedittest/system/archive_baseline.sh
- src/utils/ccpp_kinds.F90src/physics/cam/geopotential.F90src/utils/cam_ccpp/ccpp_kinds.F90src/dynamics/se/dp_coupling.F90bld/configuresrc/utils/ccpp_constituent_prop_mod.F90src/utils/cam_ccpp/ccpp_constituent_prop_mod.F9081694866c4d923d2a143ade0760ac2c41f06367c1696609561000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduCheryl code review updates.
2023-10-06 10:26:01 -060081694866c4d923d2a143ade0760ac2c41f06367cCheryl code review updates.editsrc/physics/cam/geopotential.F90deletesrc/utils/ccpp_constituent_prop_mod.F90editbld/configureaddsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90editsrc/dynamics/se/dp_coupling.F90deletesrc/utils/ccpp_kinds.F90addsrc/utils/cam_ccpp/ccpp_kinds.F90
- doc/ChangeLog789d93a935f0f1f1c3fd73d1e6d97b19f43bfa391696614822000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comAdd Changelog
2023-10-06 11:53:42 -0600789d93a935f0f1f1c3fd73d1e6d97b19f43bfa39Add Changelogeditdoc/ChangeLog
- src/dynamics/fv/dp_coupling.F90224309067eeff34eec32bf75af97c39f200d5e5a1696615018000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comcorrect spelling error
2023-10-06 11:56:58 -0600224309067eeff34eec32bf75af97c39f200d5e5acorrect spelling erroreditsrc/dynamics/fv/dp_coupling.F90
- src/control/cam_history.F90cime_config/testdefs/testlist_cam.xmlsrc/dynamics/se/dycore/global_norms_mod.F90cime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xmlsrc/ionosphere/waccmx/edyn_init.F90bld/namelist_files/namelist_definition.xmlsrc/dynamics/se/dycore/prim_advance_mod.F90src/ionosphere/waccmx/edynamo.F90src/physics/cam/vertical_diffusion.F90src/ionosphere/waccmx/ionosphere_interface.F90772d8809b70acfc8dd20d80ccf9e246eba0171b41696627923000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumisc updates
modified: bld/namelist_files/namelist_defaults_cam.xml
modified: bld/namelist_files/namelist_definition.xml
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
modified: src/control/cam_history.F90
modified: src/dynamics/se/dycore/global_norms_mod.F90
modified: src/dynamics/se/dycore/prim_advance_mod.F90
modified: src/ionosphere/waccmx/edyn_init.F90
modified: src/ionosphere/waccmx/edynamo.F90
modified: src/ionosphere/waccmx/ionosphere_interface.F90
modified: src/physics/cam/vertical_diffusion.F90
2023-10-06 15:32:03 -0600772d8809b70acfc8dd20d80ccf9e246eba0171b4misc updateseditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/control/cam_history.F90editsrc/ionosphere/waccmx/edynamo.F90editsrc/ionosphere/waccmx/edyn_init.F90editsrc/ionosphere/waccmx/ionosphere_interface.F90editcime_config/config_pes.xmleditcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam/vertical_diffusion.F90editbld/namelist_files/namelist_defaults_cam.xml
- src/physics/rrtmgp/rrtmgp_inputs.F90Externals.cfgsrc/physics/rrtmgp/radiation.F900a6e8a5dfa7dbab274c15f6341eece1b79a4299c1696634217000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove null() init in pointer declarations for thread safety
2023-10-06 19:16:57 -04000a6e8a5dfa7dbab274c15f6341eece1b79a4299cremove null() init in pointer declarations for thread safetyeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90editExternals.cfg
- cime_config/testdefs/testlist_cam.xmlf63a926335fbc1ae3456c3ebbe801f83843ff1711696863684000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurevert derecho changes to testlist_cam.xml
2023-10-09 09:01:24 -0600f63a926335fbc1ae3456c3ebbe801f83843ff171revert derecho changes to testlist_cam.xmleditcime_config/testdefs/testlist_cam.xml
- src/ionosphere/waccmx/ionosphere_interface.F900c4850459cd682636e04f400f3c1ffb702cc25d51696866359000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse rga rather
modified: src/ionosphere/waccmx/ionosphere_interface.F90
2023-10-09 09:45:59 -06000c4850459cd682636e04f400f3c1ffb702cc25d5use rga rathereditsrc/ionosphere/waccmx/ionosphere_interface.F90
- src/dynamics/se/dycore/prim_advance_mod.F90bba5775c5475eee319dec09f634070f015fb14bf1696889154000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude option 3 for pgf_formulation error message
modified: src/dynamics/se/dycore/prim_advance_mod.F90
2023-10-09 16:05:54 -0600bba5775c5475eee319dec09f634070f015fb14bfinclude option 3 for pgf_formulation error messageeditsrc/dynamics/se/dycore/prim_advance_mod.F90
- bld/namelist_files/namelist_defaults_cam.xmlbld/build-namelistf4ec0be1a58040df5eda53c8d0aef691397f9cf41696966907000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.edunamelist changes to match run 51
2023-10-10 13:41:47 -0600f4ec0be1a58040df5eda53c8d0aef691397f9cf4namelist changes to match run 51editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelist
- src/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xmlbld/build-namelistbld/namelist_files/namelist_defaults_cam.xml221dc72c6d97d3fdbb970a5cd8216bb936a006b11696972015000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comcloud ice fraction changes for cam_dev
2023-10-10 15:06:55 -0600221dc72c6d97d3fdbb970a5cd8216bb936a006b1cloud ice fraction changes for cam_deveditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/cldfrc2m.F90editbld/namelist_files/namelist_definition.xmleditbld/build-namelist
- bld/namelist_files/namelist_definition.xmlsrc/physics/cam_dev/micro_pumas_cam.F90bld/build-namelistbld/namelist_files/namelist_defaults_cam.xml7b34f391c3807a43478c7db16493a2fd2698cdac1697048371000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding micro_mg_vtrms namelist for ppe
2023-10-11 12:19:31 -06007b34f391c3807a43478c7db16493a2fd2698cdacAdding micro_mg_vtrms namelist for ppeeditbld/namelist_files/namelist_definition.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelist
- Externals_CAM.cfg7d5185a62f1b1d6fe309a3e4b22aa45e5b63b76f1697067611000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate externals to point to pumas tag v1.34
2023-10-11 17:40:11 -06007d5185a62f1b1d6fe309a3e4b22aa45e5b63b76fUpdate externals to point to pumas tag v1.34editExternals_CAM.cfg
- src/control/cam_history.F90cad3879f6dd62fa41b75c695586da126231d7d1a1697070007000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix restarts
2023-10-11 18:20:07 -0600cad3879f6dd62fa41b75c695586da126231d7d1afix restartseditsrc/control/cam_history.F90
- src/control/cam_history.F90cime_config/SystemTests/sct.py7349d16ea8d4956305494d6401469474e4d31afe1697092965000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduanother restart bug; update sct tests to reference new filename
2023-10-12 00:42:45 -06007349d16ea8d4956305494d6401469474e4d31afeanother restart bug; update sct tests to reference new filenameeditcime_config/SystemTests/sct.pyeditsrc/control/cam_history.F90
- bld/namelist_files/namelist_definition.xmlsrc/physics/cam/microp_aero.F90bld/build-namelistsrc/physics/cam/ndrop.F90bld/namelist_files/namelist_defaults_cam.xmldd69c5d6e410ab26538a6b496249dd1677a703ac1697129211000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comadded namelists for wsub_min_asf, modified namelist defaults to reflect latest tunings
2023-10-12 10:46:51 -0600dd69c5d6e410ab26538a6b496249dd1677a703acadded namelists for wsub_min_asf, modified namelist defaults to reflect latest tuningseditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/microp_aero.F90editbld/build-namelisteditsrc/physics/cam/ndrop.F90
- src/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xmlbld/build-namelistbld/namelist_files/namelist_defaults_cam.xml84a256d103497db7c73fd20a035a9d8c8f6274a01697143884000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comswap cam_dev conditional for a new namelist, remove se gamma namelist default
2023-10-12 14:51:24 -060084a256d103497db7c73fd20a035a9d8c8f6274a0swap cam_dev conditional for a new namelist, remove se gamma namelist defaulteditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelisteditsrc/physics/cam/cldfrc2m.F90
- src/control/cam_history.F90cime_config/SystemTests/sct.py0183095b21cb04a92034338f649813b5a76bc6581697146384000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix for sct tests and fix for restart tests that have only one type of history file
2023-10-12 15:33:04 -06000183095b21cb04a92034338f649813b5a76bc658fix for sct tests and fix for restart tests that have only one type of history fileeditcime_config/SystemTests/sct.pyeditsrc/control/cam_history.F90
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandssrc/physics/cam_dev/physpkg.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmsrc/physics/cam/physpkg.F90src/physics/cam/radiation_data.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camsrc/physics/cam/convect_shallow.F90src/physics/cam/cloud_diagnostics.F90src/physics/cam/phys_control.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camsrc/physics/cam/microp_driver.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsd11107652e94328a03a89ae222ae2d17782e48531697149625000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduReverting changes to support pumas named microphysics and adding back in tests that I thought were a mistake but definately werent
2023-10-12 16:27:05 -0600d11107652e94328a03a89ae222ae2d17782e4853Reverting changes to support pumas named microphysics and adding back in tests that I thought were a mistake but definately werentaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_cameditsrc/physics/cam/physpkg.F90editsrc/physics/cam/cloud_diagnostics.F90editsrc/physics/cam/radiation_data.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmeditsrc/physics/cam_dev/physpkg.F90editsrc/physics/cam/convect_shallow.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmeditsrc/physics/cam/microp_driver.F90editsrc/physics/cam/phys_control.F90
- bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/build-namelist8a59bd7c1be85c6414612f7a74f3f9057a747e951697150293000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduReverting more pumas support that doesn't work yet
2023-10-12 16:38:13 -06008a59bd7c1be85c6414612f7a74f3f9057a747e95Reverting more pumas support that doesn't work yeteditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditbld/build-namelist
- bld/namelist_files/namelist_defaults_cam.xmlc1eb7f84dfbb2053a9b07f93160cf4faf5546aff1697150476000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduOops, missed a bracket
2023-10-12 16:41:16 -0600c1eb7f84dfbb2053a9b07f93160cf4faf5546affOops, missed a bracketeditbld/namelist_files/namelist_defaults_cam.xml
- Externals.cfg52bdd66e0ee3fbb30f94e3b7183b97472f4562d71697153457000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ccs_config external
2023-10-12 19:30:57 -040052bdd66e0ee3fbb30f94e3b7183b97472f4562d7update ccs_config externaleditExternals.cfg
- src/control/cam_history.F901fac980bc28b8709dabea9041fb676c286beb4c91697156863000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educode cleanup
2023-10-12 18:27:43 -06001fac980bc28b8709dabea9041fb676c286beb4c9code cleanupeditsrc/control/cam_history.F90
- src/physics/cam_dev/physpkg.F90b489af0fbb554e39affd2acec66e8dead782b9f21697213065000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumodify initialization in cam_dev to match cam
2023-10-13 12:04:25 -0400b489af0fbb554e39affd2acec66e8dead782b9f2modify initialization in cam_dev to match cameditsrc/physics/cam_dev/physpkg.F90
- src/physics/cam/physpkg.F90cime_config/cam.case_setupcime_config/buildnml99361e130b072275b365d00c6bb01015c16804601697217874000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdates to copy GEOS-Chem files to case and then run directory
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-13 11:24:34 -060099361e130b072275b365d00c6bb01015c1680460Updates to copy GEOS-Chem files to case and then run directoryeditcime_config/buildnmleditsrc/physics/cam/physpkg.F90editcime_config/cam.case_setup
- src/physics/cam_dev/physpkg.F90Externals_CAM.cfgsrc/physics/simple/held_suarez_cam.F90src/physics/simple/physpkg.F90src/physics/cam/physpkg.F90src/physics/cam/geopotential.F90381269c8b72efeb832aa1d4931572e25c1f82ad61697219587000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdditional Cheryl code review updates.
2023-10-13 11:53:07 -0600381269c8b72efeb832aa1d4931572e25c1f82ad6Additional Cheryl code review updates.editsrc/physics/simple/held_suarez_cam.F90editsrc/physics/cam/physpkg.F90editsrc/physics/cam/geopotential.F90editsrc/physics/simple/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editExternals_CAM.cfg
- cime_config/cam.case_setupcime_config/cam.case_setup.py2731270797495a077c90c5a14a0ada6c1411a0181697228985000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange cam case_setup script from bash to python
This update requires cime updates at:
https://github.com/ESMCI/cime/pull/4497
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-13 14:29:45 -06002731270797495a077c90c5a14a0ada6c1411a018Change cam case_setup script from bash to pythonaddcime_config/cam.case_setup.pydeletecime_config/cam.case_setup
- src/physics/cam/constituents.F90c44c904445d52b334d0e7e9aabe40c8a008a24ae1697229177000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix typo in error message
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-13 14:32:57 -0600c44c904445d52b334d0e7e9aabe40c8a008a24aeFix typo in error messageeditsrc/physics/cam/constituents.F90
- Externals.cfge28d2bc8192e8ebb85037b3ec66aea8ee10669051697229287000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to allow for derecho priority setting
2023-10-13 14:34:47 -0600e28d2bc8192e8ebb85037b3ec66aea8ee1066905Update externals to allow for derecho priority settingeditExternals.cfg
- src/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xml672aaf168cfcd6e0a38e16e01afbd28aac7fe0441697229771000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress review requests
2023-10-13 14:42:51 -0600672aaf168cfcd6e0a38e16e01afbd28aac7fe044address review requestseditsrc/physics/cam/cldfrc2m.F90editbld/namelist_files/namelist_definition.xml
- bld/namelist_files/namelist_defaults_cam.xmlc50fcc610f9e5dc209d7adc77ebca09a019b64f51697231128000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange namelist based on verbal request from Adam, Cecile and Peter
2023-10-13 15:05:28 -0600c50fcc610f9e5dc209d7adc77ebca09a019b64f5Change namelist based on verbal request from Adam, Cecile and Petereditbld/namelist_files/namelist_defaults_cam.xml
- cime_config/testdefs/testlist_cam.xml8b7a4ea0c67b3e8a2ba4d512cd8f11eafe3f8ee61697244859000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange PE layout to fix some derecho failures
2023-10-13 18:54:19 -06008b7a4ea0c67b3e8a2ba4d512cd8f11eafe3f8ee6Change PE layout to fix some derecho failureseditcime_config/testdefs/testlist_cam.xml
- src/control/cam_history.F90src/control/cam_history_support.F908aa74376d2481d3ba32319d57dbc529e7f830a021697427656000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educhange implementation to static array
2023-10-15 21:40:56 -06008aa74376d2481d3ba32319d57dbc529e7f830a02change implementation to static arrayeditsrc/control/cam_history_support.F90editsrc/control/cam_history.F90
- src/physics/simple/kessler_cam.F900013f8add777e33507fdc15e9d55f2ce59bc6b901697472453000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd missing 'ncol' bounds to CCPP physics input arguments.
2023-10-16 10:07:33 -06000013f8add777e33507fdc15e9d55f2ce59bc6b90Add missing 'ncol' bounds to CCPP physics input arguments.editsrc/physics/simple/kessler_cam.F90
- src/physics/spcam/crmclouds_camaerosols.F90a35cef1720ce73dcac14ee7aae580c8ea63f4d4a1697487785000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing SPCAM test
2023-10-16 14:23:05 -0600a35cef1720ce73dcac14ee7aae580c8ea63f4d4aFix failing SPCAM testeditsrc/physics/spcam/crmclouds_camaerosols.F90
- Externals.cfgc2bb018620632d163ac9e3c3b7b03a73a081bb341697494670000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to get job_priority setting on derecho
2023-10-16 16:17:50 -0600c2bb018620632d163ac9e3c3b7b03a73a081bb34Update externals to get job_priority setting on derechoeditExternals.cfg
- cime_config/config_component.xmlcime_config/config_pes.xmlcime_config/config_compsets.xmlba3134841b6258f4ff516eb6f4f91e876ba5a7811697564949000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem acronym in compset long name from GC to GEOSCHEM
The compset aliases will continue to use GC, e.g. FCnudged_GC
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-17 11:49:09 -0600ba3134841b6258f4ff516eb6f4f91e876ba5a781Change GEOS-Chem acronym in compset long name from GC to GEOSCHEMeditcime_config/config_component.xmleditcime_config/config_compsets.xmleditcime_config/config_pes.xml
- doc/ChangeLogc468dc042761fc14526a67191184876104654e731697565061000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_131
2023-10-17 11:51:01 -0600c468dc042761fc14526a67191184876104654e73Update ChangeLog for cam6_3_131editdoc/ChangeLog
- src/control/cam_history.F9057fc39c7f5bc5cd45d18213a35232d44527c8ee41697567951000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd units and calendar to time_bounds variable
2023-10-17 12:39:11 -060057fc39c7f5bc5cd45d18213a35232d44527c8ee4add units and calendar to time_bounds variableeditsrc/control/cam_history.F90
- bld/namelist_files/use_cases/2010_geoschem.xmlsrc/chemistry/geoschem/chemistry.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlda76f711576ac0143d5202aec009cdd54dfa548c1697576883000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem namelist and its parameter to use geoschem not gc
This update also changes the subroutine used to read the namelist from
gc_readnl to geoschem_readnl.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-17 15:08:03 -0600da76f711576ac0143d5202aec009cdd54dfa548cChange GEOS-Chem namelist and its parameter to use geoschem not gceditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/namelist_definition.xml
- src/physics/rrtmgp/rrtmgp_inputs.F907ce9dd8d44b20d7c90716c32e2f1a90181d153ee1697577375000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd limits on P and T for FMTHIST
2023-10-17 15:16:15 -06007ce9dd8d44b20d7c90716c32e2f1a90181d153eeadd limits on P and T for FMTHISTeditsrc/physics/rrtmgp/rrtmgp_inputs.F90
- src/chemistry/geoschem/chemistry.F907f1d0993528283e53e692046d66d8411b447a0f11697586714000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdates for paper, SE grid compatibility, bug fixes
- Support Input_Opt%correctConvUTLS to correct for convective scavenging of soluble tracers (science update, upcoming paper)
- Update to UCX mpi broadcast of State_Chm%NOXCOEFF as SE grid not all CPUs have same amount of chunks and MPI code has to be moved to higher level that is aware of chunking
- Update to drydep namelist for SE compatibility
- Fix for incorrect SOA mapping inconsistent with published Fritz et al. (2022) methodology
Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu>
2023-10-17 19:51:54 -04007f1d0993528283e53e692046d66d8411b447a0f1Updates for paper, SE grid compatibility, bug fixeseditsrc/chemistry/geoschem/chemistry.F90
- doc/ChangeLog311a23d023282afbe3c8d4ca2ed0eb0efebaf7d61697643669000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_3_132
2023-10-18 09:41:09 -0600311a23d023282afbe3c8d4ca2ed0eb0efebaf7d6ChangeLog for cam6_3_132editdoc/ChangeLog
- src/physics/rrtmgp/rrtmgp_inputs.F90bld/namelist_files/namelist_defaults_cam.xmlaf0446aa994783a1195e09c1db3e6b931094fe041697649113000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix namelist and cloud optics indexing for waccm
2023-10-18 11:11:53 -0600af0446aa994783a1195e09c1db3e6b931094fe04fix namelist and cloud optics indexing for waccmeditsrc/physics/rrtmgp/rrtmgp_inputs.F90editbld/namelist_files/namelist_defaults_cam.xml
- src/chemistry/geoschem/chemistry.F90a66be1578443f84c546a795cf9b4f168d5d019e41697688895000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comSlight formatting updates to GEOS-Chem run log output
2023-10-19 00:14:55 -0400a66be1578443f84c546a795cf9b4f168d5d019e4Slight formatting updates to GEOS-Chem run log outputeditsrc/chemistry/geoschem/chemistry.F90
- doc/ChangeLog987cf6c859f4fe4debe95fdaece38dfa645d40791697720077000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangeLog
2023-10-19 06:54:37 -0600987cf6c859f4fe4debe95fdaece38dfa645d4079update ChangeLogeditdoc/ChangeLog
- doc/ChangeLog493df31ed68a185e4e0956909b05016fb78e89c31697722002000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangeLog
2023-10-19 07:26:42 -0600493df31ed68a185e4e0956909b05016fb78e89c3update ChangeLogeditdoc/ChangeLog
- src/control/cam_history.F90src/utils/cam_grid_support.F908df5b6b02abe818499a7f968db1c2966ef541d2d1697729440000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix for dims with bnds; make field indexing consistent
2023-10-19 09:30:40 -06008df5b6b02abe818499a7f968db1c2966ef541d2dfix for dims with bnds; make field indexing consistenteditsrc/control/cam_history.F90editsrc/utils/cam_grid_support.F90
- src/control/cam_history.F902320d0e38592cac19a6def3acc1b87bcc198db8c1697732403000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edumake field indexing consistent; remove satfile file loop
2023-10-19 10:20:03 -06002320d0e38592cac19a6def3acc1b87bcc198db8cmake field indexing consistent; remove satfile file loopeditsrc/control/cam_history.F90
- src/physics/rrtmgp/radiation.F9018efa42822fc02556edb2dedf7519a7bb0fafe0c1697733551000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edureplace 1 by ktopcam in a few places for high top models
2023-10-19 12:39:11 -040018efa42822fc02556edb2dedf7519a7bb0fafe0creplace 1 by ktopcam in a few places for high top modelseditsrc/physics/rrtmgp/radiation.F90
- src/control/cam_history.F90e2742392e1a158f3dfe5eae7295dac8121a5404b1697737877000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd parameters for split file indices
2023-10-19 11:51:17 -0600e2742392e1a158f3dfe5eae7295dac8121a5404badd parameters for split file indiceseditsrc/control/cam_history.F90
- src/control/cam_history.F90f3c8a30e104b011b27e3d30c53a34fd5153b6b8e1697738658000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edubetter logging
2023-10-19 12:04:18 -0600f3c8a30e104b011b27e3d30c53a34fd5153b6b8ebetter loggingeditsrc/control/cam_history.F90
- src/control/cam_history.F90e05302cd4d4c2e40b960790e6ed50160cd553e6c1697743685000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduremove unnecessary loop
2023-10-19 13:28:05 -0600e05302cd4d4c2e40b960790e6ed50160cd553e6cremove unnecessary loopeditsrc/control/cam_history.F90
- src/control/cam_history.F90157639d5ada0928c21c0a0d4506cc549c09787e01697756810000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix indices
2023-10-19 17:06:50 -0600157639d5ada0928c21c0a0d4506cc549c09787e0fix indiceseditsrc/control/cam_history.F90
- Externals_CAM.cfg972c057e14c63a6e4a0cd5ec20d3ed66c6fe3c041697815487000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate GEOS-Chem external tag to 14.1.2
2023-10-20 11:24:47 -0400972c057e14c63a6e4a0cd5ec20d3ed66c6fe3c04Update GEOS-Chem external tag to 14.1.2editExternals_CAM.cfg
- cime_config/config_compsets.xml95bc735e49a1d454cc82550b901d690b3582248b1697822401000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unnecessary comment about NTHRDS
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-20 11:20:01 -060095bc735e49a1d454cc82550b901d690b3582248bRemove unnecessary comment about NTHRDSeditcime_config/config_compsets.xml
- src/control/cam_history.F90356af85705872d0b26f819ce1b76ff45f89121df1697831922000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd parameters for sat, restart, and init file indices
2023-10-20 13:58:42 -0600356af85705872d0b26f819ce1b76ff45f89121dfadd parameters for sat, restart, and init file indiceseditsrc/control/cam_history.F90
- src/physics/cam/convect_shallow.F90src/physics/cam/zm_conv_intr.F903f6d12ddccd19c03fdf7d7fcd18cb444aa679d521697838422000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduModfy calling sequences to allow for removal of zm_common
2023-10-20 15:47:02 -06003f6d12ddccd19c03fdf7d7fcd18cb444aa679d52Modfy calling sequences to allow for removal of zm_commoneditsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90
- src/control/cam_history.F90src/control/cam_history_support.F90cd4cece872b6fb46aa03846657a3372fe2d3a51e1697844126000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educlean up File indexing logic
2023-10-20 17:22:06 -0600cd4cece872b6fb46aa03846657a3372fe2d3a51eclean up File indexing logiceditsrc/control/cam_history.F90editsrc/control/cam_history_support.F90
- cime_config/testdefs/testlist_cam.xmlsrc/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90852137e88c34170e197050f6b69029a1ce7895e21698180561000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduChanges to addres initial review comments
2023-10-24 14:49:21 -0600852137e88c34170e197050f6b69029a1ce7895e2Changes to addres initial review commentseditcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam_dev/stochastic_tau_cam.F90editsrc/physics/cam_dev/stochastic_emulated_cam.F90
- src/physics/cam/phys_prop.F90cime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/user_nl_camcime_config/testdefs/testlist_cam.xmlcime_config/usermods_dirs/scam_rrtmgp/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_camcime_config/usermods_dirs/rrtmgp/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/shell_commandscime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/shell_commandsdoc/ChangeLogcime_config/usermods_dirs/scam_rrtmgp/shell_commandssrc/physics/spcam/crm/CLUBB/crmx_mt95.f90cime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_clmcime_config/usermods_dirs/rrtmgp/shell_commands3e7282b7e1a0653e63abe80e829162aa472c7a891698186387000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd tests; update ChangeLog
2023-10-24 18:26:27 -04003e7282b7e1a0653e63abe80e829162aa472c7a89add tests; update ChangeLogaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_camdeletecime_config/usermods_dirs/scam_rrtmgp/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/shell_commandseditcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_clmeditdoc/ChangeLogeditsrc/physics/cam/phys_prop.F90deletecime_config/usermods_dirs/rrtmgp/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/user_nl_cameditsrc/physics/spcam/crm/CLUBB/crmx_mt95.f90deletecime_config/usermods_dirs/rrtmgp/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/shell_commandsdeletecime_config/usermods_dirs/scam_rrtmgp/user_nl_cam
- cime_config/testdefs/testlist_cam.xmlf1cfe38deb758cd637c1d4702ca606b35a293ae41698255181000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix tests
2023-10-25 13:33:01 -0400f1cfe38deb758cd637c1d4702ca606b35a293ae4fix testseditcime_config/testdefs/testlist_cam.xml
- bld/build-namelistsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90bld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_definition.xmlExternals_CAM.cfgsrc/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/Makefile53a194de85aa30a8cf2e5422088c93befb2e771d1698259826000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate mpas external to use v8.0.1
Changes include updating the mpas external hash to a few commits after the
'v8.0.1' tag, updating the mpas/Makefile, adding the mpas_cam_damping_levels
namelist option, updating some subroutine calls to use new arguments, and
setting up the halo_groups MPAS uses.
2023-10-25 12:50:26 -060053a194de85aa30a8cf2e5422088c93befb2e771dUpdate mpas external to use v8.0.1editsrc/dynamics/mpas/Makefileeditbld/build-namelisteditExternals_CAM.cfgeditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/mpas/dyn_comp.F90
- src/utils/cam_ccpp/ccpp_constituent_prop_mod.F90314e57bb29b5dbb81295e87f4c43d4087a2410f41698419083000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdditional code review updates.
2023-10-27 09:04:43 -0600314e57bb29b5dbb81295e87f4c43d4087a2410f4Additional code review updates.editsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90
- Externals_CAM.cfg8b72ec91225e1262d897235198e019e87ef8a7ae1698419468000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduSwitch atmospheric_physics external to the new ESCOMP URL.
2023-10-27 09:11:08 -06008b72ec91225e1262d897235198e019e87ef8a7aeSwitch atmospheric_physics external to the new ESCOMP URL.editExternals_CAM.cfg
- src/dynamics/se/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/time_mod.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/prim_state_mod.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/restart_dynamics.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/dyn_time_mod.F90src/dynamics/se/dycore/fvm_consistent_se_cslam.F90src/dynamics/se/dycore/prim_init.F90317d98a1cc11b7df650587bdb02aea801901f1831698420259000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRename SE dycore time_mod to dyn_time_mod
This commit renames time_mod in the SE dycore to dyn_time_mod in order to avoid naming conflicts with building with GEOS-Chem.
All USE statements updated; zero differences in run output are expected.
2023-10-27 09:24:19 -0600317d98a1cc11b7df650587bdb02aea801901f183Rename SE dycore time_mod to dyn_time_modeditsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/prim_init.F90editsrc/dynamics/se/dycore/prim_state_mod.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore/fvm_consistent_se_cslam.F90deletesrc/dynamics/se/dycore/time_mod.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/restart_dynamics.F90addsrc/dynamics/se/dycore/dyn_time_mod.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90
- src/dynamics/se/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/prim_state_mod.F90src/dynamics/se/dycore/se_dyn_time_mod.F90src/dynamics/se/restart_dynamics.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/dyn_time_mod.F90src/dynamics/se/dycore/fvm_consistent_se_cslam.F90src/dynamics/se/dycore/prim_init.F90358fda7f3d8d9f4950369fb22cff394046cb3cf01698420269000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRename to se_dyn_time_mod instead of dyn_time_mod
Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu>
2023-10-27 09:24:29 -0600358fda7f3d8d9f4950369fb22cff394046cb3cf0Rename to se_dyn_time_mod instead of dyn_time_modeditsrc/dynamics/se/restart_dynamics.F90editsrc/dynamics/se/dycore/prim_init.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dycore/fvm_consistent_se_cslam.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore/prim_state_mod.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90addsrc/dynamics/se/dycore/se_dyn_time_mod.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90deletesrc/dynamics/se/dycore/dyn_time_mod.F90
- src/utils/cam_ccpp/ccpp_constituent_prop_mod.F90a75745037db586217767137713f88c8b7e6abd291698420976000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate 'errmsg' strings to be empty for CAM-specific CCPP routines.
2023-10-27 09:36:16 -0600a75745037db586217767137713f88c8b7e6abd29Update 'errmsg' strings to be empty for CAM-specific CCPP routines.editsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90
- Externals_CAM.cfgcf0e7b66249fc3e9b605676cea232e66f304cc131698678762000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate Externals_CAM.cfg to use hash as 14.1.2 matches branch as well
2023-10-30 11:12:42 -0400cf0e7b66249fc3e9b605676cea232e66f304cc13Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as welleditExternals_CAM.cfg
- Externals_CAM.cfg95cd2a57782266451154f4dab74ec4111071570a1698687783000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRevert "Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well"
This reverts commit cf0e7b66249fc3e9b605676cea232e66f304cc13.
2023-10-30 13:43:03 -040095cd2a57782266451154f4dab74ec4111071570aRevert "Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well"editExternals_CAM.cfg
- doc/ChangeLog1dcc8b49c1865bbea850830d44b2473b471bf63f1698688007000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduInitial ChangeLog
Add ChangeLog entry before PR review and tag assignment
2023-10-30 11:46:47 -06001dcc8b49c1865bbea850830d44b2473b471bf63fInitial ChangeLogeditdoc/ChangeLog
- src/physics/simple/kessler_cam.F9095cf22414ea3b412c2301b4cd0bd24bcad40b93b1698691701000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix dimension error in Kessler 'prec_sed' argument.
2023-10-30 12:48:21 -060095cf22414ea3b412c2301b4cd0bd24bcad40b93bFix dimension error in Kessler 'prec_sed' argument.editsrc/physics/simple/kessler_cam.F90
- src/physics/simple/held_suarez_cam.F906a5af17410b5b213d310994dc92d2aa9133169091698695356000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRemove badly-placed line continuation character.
2023-10-30 13:49:16 -06006a5af17410b5b213d310994dc92d2aa913316909Remove badly-placed line continuation character.editsrc/physics/simple/held_suarez_cam.F90
- cime_config/cam.case_setup.py1b5c2811b48449d6e8ebfa65acde229d87cb30d71698766398000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSuggested changes to cam.case_setup.py
2023-10-31 09:33:18 -06001b5c2811b48449d6e8ebfa65acde229d87cb30d7Suggested changes to cam.case_setup.pyeditcime_config/cam.case_setup.py
- cime_config/cam.case_setup.py0d4bf3fb07fbad54d31173f9da2650da9162138d1698767165000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix bug and change error messages in cam.case_setup.py
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-10-31 09:46:05 -06000d4bf3fb07fbad54d31173f9da2650da9162138dFix bug and change error messages in cam.case_setup.pyeditcime_config/cam.case_setup.py
- doc/ChangeLog9cbff99ae73f346a3e62d48d8093c9f3b3a114711698770841000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate ChangeLog.
2023-10-31 10:47:21 -06009cbff99ae73f346a3e62d48d8093c9f3b3a11471Update ChangeLog.editdoc/ChangeLog
- src/control/cam_history.F90src/utils/cam_grid_support.F90ed5dbe26989accdb0a1dc7486fa07581f1ce4ca61698878090000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduaddress reviewer comments
2023-11-01 16:34:50 -0600ed5dbe26989accdb0a1dc7486fa07581f1ce4ca6address reviewer commentseditsrc/control/cam_history.F90editsrc/utils/cam_grid_support.F90
- src/control/cam_history.F905149a481a3d6c34f64ffb14868681630271d66851698878180000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduremove unused variable
2023-11-01 16:36:20 -06005149a481a3d6c34f64ffb14868681630271d6685remove unused variableeditsrc/control/cam_history.F90
- src/control/cam_history.F909da259093ce4cfa2b13e2decffa515f4153ee04a1698878530000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix looping range
2023-11-01 16:42:10 -06009da259093ce4cfa2b13e2decffa515f4153ee04afix looping rangeeditsrc/control/cam_history.F90
- bld/configure6443fcb68319296a3828c63611bb5014d146e1b41698947497000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments
2023-11-02 11:51:37 -06006443fcb68319296a3828c63611bb5014d146e1b4Addressing review commentseditbld/configure
- bld/namelist_files/use_cases/sd_geoschem.xmlcime_config/testdefs/testlist_cam.xmlcime_config/config_component.xmlcime_config/config_compsets.xml84e830df9a6490f8b83a4a5e933527b9fc71e63e1699024467000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove the FCSD_GC compset
This compset for GEOS-Chem is not currently functional. We can bring back
the option in the future if there is demand.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-11-03 09:14:27 -060084e830df9a6490f8b83a4a5e933527b9fc71e63eRemove the FCSD_GC compseteditcime_config/config_compsets.xmldeletebld/namelist_files/use_cases/sd_geoschem.xmleditcime_config/testdefs/testlist_cam.xmleditcime_config/config_component.xml
- cime_config/config_pes.xmlcime_config/config_compsets.xml15bbeef4b0556509d1db473b80e235f02e6cb11b1699024752000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove NTHRDS overrides for GEOS-Chem
NTHRDS is 1 by default when using GEOS-Chem compsets so these overrides
are not necessary. We find that manually changing NTHRDS to something
other than 1 breaks the model, but this is the case with non-GEOS-Chem
compsets as well. Unless this becomes a problem the overrides are not
needed at this time.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-11-03 09:19:12 -060015bbeef4b0556509d1db473b80e235f02e6cb11bRemove NTHRDS overrides for GEOS-Chemeditcime_config/config_compsets.xmleditcime_config/config_pes.xml
- doc/ChangeLog010f084d9d2d5b0bef73322413d58ce9e8d982b31699055698000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduCorrect namelist file changes in ChangeLog
2023-11-03 17:54:58 -0600010f084d9d2d5b0bef73322413d58ce9e8d982b3Correct namelist file changes in ChangeLogeditdoc/ChangeLog
- .gitignore392e9e33494b472b4367152d6b4a96c1fc22d37d1699475131000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove redundant includes of src/hemco in .gitignore
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-11-08 13:25:31 -0700392e9e33494b472b4367152d6b4a96c1fc22d37dRemove redundant includes of src/hemco in .gitignoreedit.gitignore
- src/control/cam_history.F907a0e5282e7dd573455301bf4db753cccc4c4f8a51699483905000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edulogic to add file type flag to right part of hfilename_spec, updates to treat nhtfrq = 1 as instantaneous
2023-11-08 15:51:45 -07007a0e5282e7dd573455301bf4db753cccc4c4f8a5logic to add file type flag to right part of hfilename_spec, updates to treat nhtfrq = 1 as instantaneouseditsrc/control/cam_history.F90
- src/control/cam_history.F90f955d7f879dbbcacc1c108b2f53563c8f56565f61699484158000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educhange time_op value to "point" for instantaneous fields
2023-11-08 15:55:58 -0700f955d7f879dbbcacc1c108b2f53563c8f56565f6change time_op value to "point" for instantaneous fieldseditsrc/control/cam_history.F90
- bld/configuresrc/physics/.clubb_sparse_checkoutExternals_CAM.cfgsrc/physics/cosp2/.cosp_sparse_checkout8a07c9e37cb5028b08cf0c66d6505e9c60b691c01699969574000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremoves svn sparse checkout and uses git sparse checkout for all repos, combine clubb and silhs into clubb
2023-11-14 06:46:14 -07008a07c9e37cb5028b08cf0c66d6505e9c60b691c0removes svn sparse checkout and uses git sparse checkout for all repos, combine clubb and silhs into clubbaddsrc/physics/cosp2/.cosp_sparse_checkouteditExternals_CAM.cfgeditbld/configureaddsrc/physics/.clubb_sparse_checkout
- src/physics/.clubb_sparse_checkoutsrc/physics/cosp2/.cosp_sparse_checkout401b3383103ed81dbbfbd4dbca836387d065a7cf1699969912000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd final carrage returns
2023-11-14 06:51:52 -0700401b3383103ed81dbbfbd4dbca836387d065a7cfadd final carrage returnseditsrc/physics/.clubb_sparse_checkouteditsrc/physics/cosp2/.cosp_sparse_checkout
- src/physics/cosp2/.cosp_sparse_checkoutExternals_CAM.cfg5a2f611acb6020ebcc3a048421a09804c95c27b71699977588000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduModify COSP2 checkout to remove un-used directories/files.
2023-11-14 08:59:48 -07005a2f611acb6020ebcc3a048421a09804c95c27b7Modify COSP2 checkout to remove un-used directories/files.editsrc/physics/cosp2/.cosp_sparse_checkouteditExternals_CAM.cfg
- bld/configureExternals_CAM.cfge8707d5a3bd96c7c0ad32c9adf8518313ef02bf71699979512000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix paths, including a mistake introduced on my end.
2023-11-14 09:31:52 -0700e8707d5a3bd96c7c0ad32c9adf8518313ef02bf7Fix paths, including a mistake introduced on my end.editbld/configureeditExternals_CAM.cfg
- bld/build-namelist12d89ea1e334b8f7ef9920a1846bef2198c48a521700014437000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comExit with warning in build-namelist if hemco_config_file or hemco_diagn_file are specified in user namelist.
Current behavior in build-namelist enforces use of config files in case directory which are copied to run directory at submit time.
User customization to user_nl_cam for the path of HEMCO config files will not take effect when running with GEOS-Chem chemistry, instead the user should edit or symlink from the files in the case directory similar to standalone GEOS-Chem operation.
This commit adds a check in build-namelist for this customization and aborts with error to warn user that this is unsupported.
Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu>
2023-11-14 21:13:57 -050012d89ea1e334b8f7ef9920a1846bef2198c48a52Exit with warning in build-namelist if hemco_config_file or hemco_diagn_file are specified in user namelist.editbld/build-namelist
- bld/build-namelist5c048af25496932af3fd43cbfd94cfa63b20611b1700078927000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix typo; indent with spaces
2023-11-15 15:08:47 -05005c048af25496932af3fd43cbfd94cfa63b20611bFix typo; indent with spaceseditbld/build-namelist
- Externals.cfgc268c64c58c8de47b35a60efeb6c21eea67fdfe11700089029000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to match cesm2_3_alpha16g
2023-11-15 15:57:09 -0700c268c64c58c8de47b35a60efeb6c21eea67fdfe1Update externals to match cesm2_3_alpha16geditExternals.cfg
- Externals.cfga842526658891eb34d2070d9a95b46bb579657f11700154846000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ccs_config external
2023-11-16 10:14:06 -0700a842526658891eb34d2070d9a95b46bb579657f1Update ccs_config externaleditExternals.cfg
- src/physics/cosp2/Makefile.in07359951bcf09a31bdb796dbd88fbad9ab5a73321700159203000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix COSP Makefile paths.
2023-11-16 11:26:43 -070007359951bcf09a31bdb796dbd88fbad9ab5a7332Fix COSP Makefile paths.editsrc/physics/cosp2/Makefile.in
- bld/namelist_files/geoschem_master_aer_wetdep_list.xmlbld/build-namelistbld/namelist_files/mozart_master_aer_drydep_list.xmlbld/namelist_files/geoschem_master_gas_drydep_list.xmlbld/namelist_files/master_gas_wetdep_list.xmlbld/namelist_files/mozart_master_aer_wetdep_list.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlbld/namelist_files/master_aer_drydep_list.xmlbld/namelist_files/mozart_master_gas_drydep_list.xmlbld/namelist_files/master_aer_wetdep_list.xmlbld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/mozart_master_gas_wetdep_list.xmlbld/perl5lib/Build/ChemNamelist.pmbld/namelist_files/geoschem_master_gas_wetdep_list.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/master_gas_drydep_list.xmlbld/namelist_files/geoschem_master_aer_drydep_list.xmlcc85a5be56669162cecee534ab966625fb2604f81700165289000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSplit master deposition lists into two: mozart and geoschem
Deposition lists are no longer stored in GEOS-Chem use case files.
Set_dep_lists now takes chem as an argument and picks the appropriate
master deposition list file to use, either Mozart or GEOS-Chem.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-11-16 13:08:09 -0700cc85a5be56669162cecee534ab966625fb2604f8Split master deposition lists into two: mozart and geoschemaddbld/namelist_files/mozart_master_gas_drydep_list.xmleditbld/namelist_files/use_cases/hist_geoschem.xmladdbld/namelist_files/geoschem_master_aer_wetdep_list.xmladdbld/namelist_files/geoschem_master_gas_drydep_list.xmldeletebld/namelist_files/master_aer_wetdep_list.xmldeletebld/namelist_files/master_gas_wetdep_list.xmladdbld/namelist_files/geoschem_master_gas_wetdep_list.xmleditbld/perl5lib/Build/ChemNamelist.pmeditbld/namelist_files/use_cases/2010_geoschem.xmladdbld/namelist_files/mozart_master_aer_wetdep_list.xmleditbld/build-namelistdeletebld/namelist_files/master_aer_drydep_list.xmladdbld/namelist_files/mozart_master_gas_wetdep_list.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmldeletebld/namelist_files/master_gas_drydep_list.xmladdbld/namelist_files/mozart_master_aer_drydep_list.xmladdbld/namelist_files/geoschem_master_aer_drydep_list.xmleditbld/namelist_files/use_cases/2000_geoschem.xml
- cime_config/SystemTests/tmc.pyca86d0fdb61a5cc261c7fbb3bda381e382924bef1700169589000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing TMC tests
2023-11-16 14:19:49 -0700ca86d0fdb61a5cc261c7fbb3bda381e382924befFix failing TMC testseditcime_config/SystemTests/tmc.py
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/namelist_definition.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/hist_geoschem.xmldcc7e204afa92c52ce94be22dcf2d4d3147b67941700173162000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRevert dep_data_file input_pathname to "abs"; use new file for geoschem
Previously the dep_data_file default for GEOS-Chem was not actually being
used due to inclusion in the use case files. This let a bug go under the
radar that dep_data_file input_pathname="abs" was removed from the
namelist definitions, meaning the configured inputdata path would not be
used as a prefix to whatever dep_data_file was set as. This allowed
GEOS-Chem compsets to work since the full path was in the use case files,
but it resulted in non-GEOS-Chem compsets failing due to an incomplete
path for the deposition netcdf file containing Henry's Law coeffs et al.
This update restores using inputdata path as a prefix to dep_data_file,
and so fixes the non-GEOS-Chem compsets. It also removes the setting of
dep_data_file in the GEOS-Chem compsets and updates the filename in
the namelist defaults for dep_data_file if using GEOS-Chem.
GEOS-Chem compsets will not work until someone at NCAR moves the file to
the target inputdata directory. The request to do this has been made.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2023-11-16 15:19:22 -0700dcc7e204afa92c52ce94be22dcf2d4d3147b6794Revert dep_data_file input_pathname to "abs"; use new file for geoschemeditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xml
- doc/ChangeLog5888903ea6158488314b8789236637e761e932901700173844000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate ChangeLog.
2023-11-16 15:30:44 -07005888903ea6158488314b8789236637e761e93290Update ChangeLog.editdoc/ChangeLog
- cime_config/config_pes.xml359360cbb5e8367237b0652b2cfab799673183c21700179220000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PE layouts for derecho
2023-11-16 17:00:20 -0700359360cbb5e8367237b0652b2cfab799673183c2Update PE layouts for derechoeditcime_config/config_pes.xml
- Externals.cfg981b95a4576af3680bcd19e35d229a6e075e15251700241815000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduback off ccs_config external
2023-11-17 10:23:35 -0700981b95a4576af3680bcd19e35d229a6e075e1525back off ccs_config externaleditExternals.cfg
- cime_config/config_pes.xmlc8757122debc9593f7612e29109bd71f9fa494d91700259471000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing derecho test
2023-11-17 15:17:51 -0700c8757122debc9593f7612e29109bd71f9fa494d9Fix failing derecho testeditcime_config/config_pes.xml
- doc/ChangeLog_template9c482b3898ff1c292ef752fcd293b078b9b7f8bb1700262700000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd derecho testing to ChangeLog template
2023-11-17 16:11:40 -07009c482b3898ff1c292ef752fcd293b078b9b7f8bbAdd derecho testing to ChangeLog templateeditdoc/ChangeLog_template
- doc/ChangeLog4cf858194ebaaa4532297d449c54615660b9d57d1700368423000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_136
2023-11-18 21:33:43 -07004cf858194ebaaa4532297d449c54615660b9d57dUpdate ChangeLog for cam6_3_136editdoc/ChangeLog
- src/control/cam_history.F90bld/namelist_files/namelist_definition.xml4ac02a1e1be8caea7de6f6ca1fe25f1f6f1717321700592896000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd namelist control for nstep==0 output
2023-11-21 13:54:56 -05004ac02a1e1be8caea7de6f6ca1fe25f1f6f171732add namelist control for nstep==0 outputeditsrc/control/cam_history.F90editbld/namelist_files/namelist_definition.xml
- bld/namelist_files/namelist_defaults_cam.xmlbld/build-namelistf4609ddd4c67d879f8d9d4a361c38848810fc84b1700620475000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduaircraft emissions for LT and MT compsets
modified: bld/build-namelist
modified: bld/namelist_files/namelist_defaults_cam.xml
2023-11-21 19:34:35 -0700f4609ddd4c67d879f8d9d4a361c38848810fc84baircraft emissions for LT and MT compsetseditbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelist
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clmcime_config/config_pes.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cplcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cam85a3beb0d211e60e68b727f7ab16cb218a998d961700667292000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduderecho pelayouts for ne30 waccm and camchem
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commands
deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cam
deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clm
deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cpl
2023-11-22 08:34:52 -070085a3beb0d211e60e68b727f7ab16cb218a998d96derecho pelayouts for ne30 waccm and camchemdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cpldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commandseditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clmeditcime_config/config_pes.xml
- cime_config/config_pes.xmlbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xmlbld/namelist_files/use_cases/waccm_ma_2000_cam6.xml2e724af7256e7ca8c7d1897491d52c2e2ee174351700679342000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumore derecho pelayouts changes for waccm(x) and camchem
modified: bld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xml
modified: bld/namelist_files/use_cases/waccm_ma_2000_cam6.xml
modified: cime_config/config_pes.xml
2023-11-22 11:55:42 -07002e724af7256e7ca8c7d1897491d52c2e2ee17435more derecho pelayouts changes for waccm(x) and camchemeditbld/namelist_files/use_cases/waccm_ma_2000_cam6.xmleditcime_config/config_pes.xmleditbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xml
- bld/namelist_files/namelist_definition.xml809e76f274ccf340cbe86aa7b8e3bc1f6c096c911701098309000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate description of mpas_cam_coef
Better describe how the damping is applied and interacts with
mpas_cam_damping_levels
2023-11-27 08:18:29 -0700809e76f274ccf340cbe86aa7b8e3bc1f6c096c91Update description of mpas_cam_coefeditbld/namelist_files/namelist_definition.xml
- src/dynamics/mpas/dyn_comp.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml59ccc83c84558247c521224432be68b61ec485f31701098564000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduSet mpas_cam_damping_levels default to 3, update description
2023-11-27 08:22:44 -070059ccc83c84558247c521224432be68b61ec485f3Set mpas_cam_damping_levels default to 3, update descriptioneditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/mpas/dyn_comp.F90editbld/namelist_files/namelist_defaults_cam.xml
- cime_config/testdefs/testmods_dirs/cam/nudging/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam5_port_ne30/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam6_port_f09/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam5_port_f45/user_nl_camcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam4_port5d/user_nl_camcime_config/testdefs/testmods_dirs/cam/scmarm/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam4_port/user_nl_camcime_config/testdefs/testmods_dirs/cam/scm_prep/user_nl_camcime_config/testdefs/testmods_dirs/cam/scm_prep_c6/user_nl_cam4ebbafb61825cedf13e8083655073e721eb713a41701099760000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduwrite nstep0 for tests w/ multiple timesamples per file
2023-11-27 08:42:40 -07004ebbafb61825cedf13e8083655073e721eb713a4write nstep0 for tests w/ multiple timesamples per fileeditcime_config/testdefs/testmods_dirs/cam/cam6_port_f09/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/nudging/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scm_prep/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scmarm/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scm_prep_c6/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam4_port5d/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam5_port_f45/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam4_port/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam5_port_ne30/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cam
- src/dynamics/mpas/dyn_comp.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml91d9f53d11e5581d12ed447ddd057c850319e2c01701109742000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduDefault mpas_cam_damping_levels to 0
This makes it consistent with mpas_cam_coef: the associated damping is
off by default and both variables would need to be changed to enable it.
2023-11-27 11:29:02 -070091d9f53d11e5581d12ed447ddd057c850319e2c0Default mpas_cam_damping_levels to 0editbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/mpas/dyn_comp.F90
- doc/ChangeLog02083058e82cae73b0e2b365bb6d78f6d2cf6f4f1701112465000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry
2023-11-27 14:14:25 -050002083058e82cae73b0e2b365bb6d78f6d2cf6f4fstart ChangeLog entryeditdoc/ChangeLog
- src/control/cam_history.F90d92847f55668940cb06b74fb7b31007559c768101701123605000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove check for "FV only" zonal mean fields
2023-11-27 17:20:05 -0500d92847f55668940cb06b74fb7b31007559c76810remove check for "FV only" zonal mean fieldseditsrc/control/cam_history.F90
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_cam268f40b350d44ea3ba550b8217be633d00df55ed1701127119000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUse mpas_cam_damping in F2000climo mpasa480 grid aux_cam test
To ensure the absorbing layer code is tested going forward, the
F2000climo aux_cam test using the mpasa480_mpasa480 grid has been
modified to turn on the damping associated with mpas_cam_coef and
mpas_cam_damping_levels (in addition to the existing Rayleigh damping).
2023-11-27 16:18:39 -0700268f40b350d44ea3ba550b8217be633d00df55edUse mpas_cam_damping in F2000climo mpasa480 grid aux_cam testeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_cam
- doc/ChangeLog1158114725019cb2bff28eacc67dba130711c50f1701133185000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduCorrect ChangeLog order after merging cam_development
I buried my own ChangeLog entry during the last merge, this moves it to the top
2023-11-27 17:59:45 -07001158114725019cb2bff28eacc67dba130711c50fCorrect ChangeLog order after merging cam_developmenteditdoc/ChangeLog
- test/system/archive_baseline.sh8e981a7bc1862f987c2ca8b80044590d57faba361701133238000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduChange derecho baselinedir in archive_baselines.sh
2023-11-27 18:00:38 -07008e981a7bc1862f987c2ca8b80044590d57faba36Change derecho baselinedir in archive_baselines.shedittest/system/archive_baseline.sh
- bld/namelist_files/use_cases/waccmx_ma_2000_cam6.xmlb08765fd3540962d48bd6bdbb532e8f7a4d670db1701190714000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumodify waccmx use case file to only add zonal mean fields for FV
2023-11-28 11:58:34 -0500b08765fd3540962d48bd6bdbb532e8f7a4d670dbmodify waccmx use case file to only add zonal mean fields for FVeditbld/namelist_files/use_cases/waccmx_ma_2000_cam6.xml
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/shell_commands24946e737e1893cdef05a6e44e245bc7cb0b8b5d1701221231000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove unneeded lnd files from mpas testmods
2023-11-28 20:27:11 -050024946e737e1893cdef05a6e44e245bc7cb0b8b5dremove unneeded lnd files from mpas testmodseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/shell_commandseditcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/shell_commands
- doc/ChangeLog6ae06beb043cd5271d6b1d9bab3002d0b66b709a1701282057000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate ChangeLog for cam6_3_137
Add date, tag, reviewers, final test results, etc
2023-11-29 11:20:57 -07006ae06beb043cd5271d6b1d9bab3002d0b66b709aUpdate ChangeLog for cam6_3_137editdoc/ChangeLog
- src/control/cam_history.F90d37e8c40eb87928848b73d36909da287be5f0b2f1701289950000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edualways create instantaneous file; write time-dependent fields to inst. file only
2023-11-29 13:32:30 -0700d37e8c40eb87928848b73d36909da287be5f0b2falways create instantaneous file; write time-dependent fields to inst. file onlyeditsrc/control/cam_history.F90
- src/control/cam_history.F9013dd76d1e19df61ce25c948795df94d3a87fb3541701290138000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduaddress reviewer comments
2023-11-29 13:35:38 -070013dd76d1e19df61ce25c948795df94d3a87fb354address reviewer commentseditsrc/control/cam_history.F90
- cime_config/testdefs/testlist_cam.xmlcime_config/config_pes.xmle6325feddbcf19c0dcf24f4141a95c8d5fc0c9a51701365609000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduderecho tests and pe layout
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_cam.xml
2023-11-30 10:33:29 -0700e6325feddbcf19c0dcf24f4141a95c8d5fc0c9a5derecho tests and pe layouteditcime_config/config_pes.xmleditcime_config/testdefs/testlist_cam.xml
- cime_config/testdefs/testlist_cam.xmldoc/ChangeLog03f8695318b3c925cc7168fcdc4ac8c94e748ab11701374287000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduremove derecho tests; ChangeLog draft
2023-11-30 12:58:07 -070003f8695318b3c925cc7168fcdc4ac8c94e748ab1remove derecho tests; ChangeLog drafteditcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLog
- doc/ChangeLog791855a117a2791d5985f20df8bc5d52833ff5a01701375202000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-11-30 13:13:22 -0700791855a117a2791d5985f20df8bc5d52833ff5a0ChangeLog updateeditdoc/ChangeLog
- doc/ChangeLogb84b58f2484ee22c9d6cc85001ea35f7470c2f7c1701436444000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-01 06:14:04 -0700b84b58f2484ee22c9d6cc85001ea35f7470c2f7cChangeLog updateeditdoc/ChangeLog
- doc/ChangeLog2e1546e8dcfbfde25b6d547beaabda59257dc67b1701449375000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft
2023-12-01 09:49:35 -07002e1546e8dcfbfde25b6d547beaabda59257dc67bChangeLog drafteditdoc/ChangeLog
- doc/ChangeLoge520a5136df683d38950dfbf84808052365768001701471077000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog Update
2023-12-01 15:51:17 -0700e520a5136df683d38950dfbf8480805236576800ChangeLog Updateeditdoc/ChangeLog
- doc/ChangeLog027a779f1dbbeaa934085d188247678d14ab5cc61701471248000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-01 15:54:08 -0700027a779f1dbbeaa934085d188247678d14ab5cc6ChangeLog updateeditdoc/ChangeLog
- doc/ChangeLog3570ddc985618739bc32d663fbe4a95853f490001701471967000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-01 16:06:07 -07003570ddc985618739bc32d663fbe4a95853f49000ChangeLog updateeditdoc/ChangeLog
- doc/ChangeLogcd560943ef40e800be0dbed86c9fef604d3308541701787489000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog for misc PR
2023-12-05 09:44:49 -0500cd560943ef40e800be0dbed86c9fef604d330854start ChangeLog for misc PReditdoc/ChangeLog
- cime_config/config_tests.xmlcime_config/buildnml414935b858c1b34034c2253e1d68a574199263ea1701788578000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix single executable plb test
2023-12-05 10:02:58 -0500414935b858c1b34034c2253e1d68a574199263eafix single executable plb testeditcime_config/buildnmleditcime_config/config_tests.xml
- src/control/cam_history.F9039ca24763f42c213c4e92417a3e07d1a6d5e52781701799078000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educalculate midpoint date and datesec for accumulated file
2023-12-05 10:57:58 -070039ca24763f42c213c4e92417a3e07d1a6d5e5278calculate midpoint date and datesec for accumulated fileeditsrc/control/cam_history.F90
- cime_config/SystemTests/sct.pyde6c33aaa737b26dd9232d3c52181699d1b58a601701814375000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix sct tests
2023-12-05 15:12:55 -0700de6c33aaa737b26dd9232d3c52181699d1b58a60fix sct testseditcime_config/SystemTests/sct.py
- doc/ChangeLogb32b71e117c38f6155a36fe67af5f4f75ec3d7a31701820437000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduinitial changelog
2023-12-05 16:53:57 -0700b32b71e117c38f6155a36fe67af5f4f75ec3d7a3initial changelogeditdoc/ChangeLog
- doc/ChangeLog75b5770b17339df18a300c2f806d06887f6a24d21701823718000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2023-12-05 19:48:38 -050075b5770b17339df18a300c2f806d06887f6a24d2update ChangeLogeditdoc/ChangeLog
- src/physics/cam/cam_diagnostics.F90src/physics/rrtmg/rrtmg_state.F90src/physics/spcam/spcam_drivers.F90src/physics/cam/vertical_diffusion.F90src/physics/waccm/mo_aurora.F901f8332c282879f87b87e5eb306252853a89e7b451701827120000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix several outfld calls
2023-12-05 20:45:20 -05001f8332c282879f87b87e5eb306252853a89e7b45fix several outfld callseditsrc/physics/rrtmg/rrtmg_state.F90editsrc/physics/spcam/spcam_drivers.F90editsrc/physics/cam/cam_diagnostics.F90editsrc/physics/cam/vertical_diffusion.F90editsrc/physics/waccm/mo_aurora.F90
- src/control/cam_history.F906dc3aedbf017c94277d9b40bf0e76bf354a7669d1701827303000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix for SILHS history output
2023-12-05 20:48:23 -05006dc3aedbf017c94277d9b40bf0e76bf354a7669dfix for SILHS history outputeditsrc/control/cam_history.F90
- doc/ChangeLog31440539172d9fca51ad456a2803e19954369ec31701879671000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2023-12-06 11:21:11 -050031440539172d9fca51ad456a2803e19954369ec3update ChangeLogeditdoc/ChangeLog
- doc/ChangeLog6c59437f1c5290c55ff545a96e132cb301f622cd1701909267000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduupdated changelog
2023-12-06 17:34:27 -07006c59437f1c5290c55ff545a96e132cb301f622cdupdated changelogeditdoc/ChangeLog
- cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mee_fluxes/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_cospsathist/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s/user_nl_camcime_config/testdefs/testmods_dirs/cam/reduced_hist1d/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_diags/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_apmee/user_nl_camdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/outfrq3h/user_nl_camdb4ffb66192d4273b6ec471e05ffee98b82483701701976271000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduwrite nstep0 from more tests
2023-12-07 14:11:11 -0500db4ffb66192d4273b6ec471e05ffee98b8248370write nstep0 from more testseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mee_fluxes/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3h/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s_apmee/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/reduced_hist1d/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s_cospsathist/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s_diags/user_nl_cameditdoc/ChangeLog
- doc/ChangeLogdoc/ChangeLog_template28622797c16542cc8c1c1bf98eec63803d56a5171701976681000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog and ChangeLog_template
2023-12-07 14:18:01 -050028622797c16542cc8c1c1bf98eec63803d56a517update ChangeLog and ChangeLog_templateeditdoc/ChangeLog_templateeditdoc/ChangeLog
- src/dynamics/se/stepon.F90src/dynamics/se/dycore/fvm_mapping.F90870a6a273a58ab5259d357bfb46f2e8decd2f6b21701986865000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edureduce memory footprint when writing CSLAM IC files
modified: src/dynamics/se/dycore/fvm_mapping.F90
modified: src/dynamics/se/stepon.F90
2023-12-07 15:07:45 -0700870a6a273a58ab5259d357bfb46f2e8decd2f6b2reduce memory footprint when writing CSLAM IC fileseditsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dycore/fvm_mapping.F90
- bld/build-namelist3fe3c8616c6526b946c3f186e1073529405b42e71701991681000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFix for FSCAM
2023-12-07 16:28:01 -07003fe3c8616c6526b946c3f186e1073529405b42e7Fix for FSCAMeditbld/build-namelist
- Externals_CAM.cfg3e7e3ea2f4746570ff4cc8b2dc80857d981d44e31701992309000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduPoint to updated PUMAS external
2023-12-07 16:38:29 -07003e7e3ea2f4746570ff4cc8b2dc80857d981d44e3Point to updated PUMAS externaleditExternals_CAM.cfg
- doc/ChangeLog29b108038be4252733dae926e76863a8cbaf958c1702052170000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2023-12-08 11:16:10 -050029b108038be4252733dae926e76863a8cbaf958cupdate ChangeLogeditdoc/ChangeLog
- src/dynamics/se/stepon.F90b03be228bb40e751370fb4d191fb6d5ec71ca2dc1702329723000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educheck allocate status
modified: src/dynamics/se/stepon.F90
2023-12-11 14:22:03 -0700b03be228bb40e751370fb4d191fb6d5ec71ca2dccheck allocate statuseditsrc/dynamics/se/stepon.F90
- src/dynamics/se/stepon.F90src/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/fvm_mapping.F90007fee7f950a0a600597a81d1f105d96ad482ae51702482350000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimplement fvm2phys mapping for single tracer
modified: src/dynamics/se/dycore/fvm_mapping.F90
modified: src/dynamics/se/dycore/fvm_mod.F90
modified: src/dynamics/se/stepon.F90
2023-12-13 08:45:50 -0700007fee7f950a0a600597a81d1f105d96ad482ae5implement fvm2phys mapping for single tracereditsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dycore/fvm_mod.F90
- src/physics/cam/zm_conv_intr.F90src/physics/cam/convect_shallow.F902ed878354b37f5ebd5e946870a945bc9a8b6fb601702497540000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix compilation error
2023-12-13 12:59:00 -07002ed878354b37f5ebd5e946870a945bc9a8b6fb60Fix compilation erroreditsrc/physics/cam/zm_conv_intr.F90editsrc/physics/cam/convect_shallow.F90
- doc/ChangeLogb953252e150c5b6af0fb8e97556fb43b98513f381702510553000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2023-12-13 18:35:53 -0500b953252e150c5b6af0fb8e97556fb43b98513f38update ChangeLogeditdoc/ChangeLog
- bld/configureExternals_CAM.cfgsrc/physics/spcam/crmclouds_camaerosols.F90src/physics/cam/convect_shallow.F90src/physics/cam/zm_conv_intr.F90caa528d6ffffd4191873451ec439713eee0cdfbc1702597772000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress some reviewer comments
2023-12-14 16:49:32 -0700caa528d6ffffd4191873451ec439713eee0cdfbcaddress some reviewer commentseditbld/configureeditExternals_CAM.cfgeditsrc/physics/cam/zm_conv_intr.F90editsrc/physics/spcam/crmclouds_camaerosols.F90editsrc/physics/cam/convect_shallow.F90
- bld/namelist_files/namelist_definition.xmlsrc/physics/cam_dev/micro_pumas_cam.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90cime_config/SystemTests/mgp.py67097c084c3525483e38a7606c91f0c9412dc6cc1702684164000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments
2023-12-15 16:49:24 -070067097c084c3525483e38a7606c91f0c9412dc6ccAddressing review commentseditcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam_dev/stochastic_tau_cam.F90editcime_config/SystemTests/mgp.pyeditsrc/physics/cam_dev/stochastic_emulated_cam.F90editbld/namelist_files/namelist_definition.xml
- doc/ChangeLogba8c4a0f2ba4eef3bd0fd09ecd01faf0bfe522981703011612000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft
2023-12-19 11:46:52 -0700ba8c4a0f2ba4eef3bd0fd09ecd01faf0bfe52298ChangeLog drafteditdoc/ChangeLog
- doc/ChangeLog298a6ccdcd988fd63a776fd1802d14bef14d16e41703024045000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-19 15:14:05 -0700298a6ccdcd988fd63a776fd1802d14bef14d16e4ChangeLog updateeditdoc/ChangeLog
- src/control/camsrfexch.F90src/physics/cam/cam_diagnostics.F90src/cpl/nuopc/atm_import_export.F90a8117555b2accc3afb98e8da2dd9020ce4dd8c5b1703085312000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduAdd ability to output UGUST variable from coupler.
2023-12-20 08:15:12 -0700a8117555b2accc3afb98e8da2dd9020ce4dd8c5bAdd ability to output UGUST variable from coupler.editsrc/physics/cam/cam_diagnostics.F90editsrc/control/camsrfexch.F90editsrc/cpl/nuopc/atm_import_export.F90
- doc/ChangeLog65aedbbc7379cd778065a82991766929029e10be1703086351000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-20 08:32:31 -070065aedbbc7379cd778065a82991766929029e10beChangeLog updateeditdoc/ChangeLog
- doc/ChangeLog21af8420ebd37549a628cbd56fcd40c444b0267b1703087297000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2023-12-20 08:48:17 -070021af8420ebd37549a628cbd56fcd40c444b0267bChangeLog updateeditdoc/ChangeLog
- bld/namelist_files/namelist_defaults_cam.xmlc41dc27265ccae924bd173260ded18fe663859501703712070000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRevert to non-answer changing for cam_dev compsets
2023-12-27 14:21:10 -0700c41dc27265ccae924bd173260ded18fe66385950Revert to non-answer changing for cam_dev compsetseditbld/namelist_files/namelist_defaults_cam.xml
- src/physics/cam/cam_diagnostics.F90d375f4dc36c2b5caa8d17b3be7a796b48aa82ec61704209064000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduFixing alignment issues
2024-01-02 08:24:24 -0700d375f4dc36c2b5caa8d17b3be7a796b48aa82ec6Fixing alignment issueseditsrc/physics/cam/cam_diagnostics.F90
- cime_config/testdefs/testlist_cam.xmltest/system/test_driver.sh9743f9dbd58e9f30d661911e7a947a326dded7601704231963000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove cheyenne testing and make all cheyenne tests be derecho ones
2024-01-02 14:46:03 -07009743f9dbd58e9f30d661911e7a947a326dded760Remove cheyenne testing and make all cheyenne tests be derecho onesedittest/system/test_driver.sheditcime_config/testdefs/testlist_cam.xml
- doc/ChangeLogbld/namelist_files/namelist_defaults_cam.xml616af59ca88bbcc5ef56f603d37ce8f52618362a1704233121000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog and remove comment
2024-01-02 15:05:21 -0700616af59ca88bbcc5ef56f603d37ce8f52618362aUpdate ChangeLog and remove commenteditbld/namelist_files/namelist_defaults_cam.xmleditdoc/ChangeLog
- doc/ChangeLog2bb62a480a6237fd231337793e362e33b5d49ef81704233215000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduCorrect date for cam6_3_144
2024-01-02 15:06:55 -07002bb62a480a6237fd231337793e362e33b5d49ef8Correct date for cam6_3_144editdoc/ChangeLog
- test/system/archive_baseline.sh3f02362404adfaf575b64ca103c765e888576d141704236446000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduremove cheyenne from archive_baselines
2024-01-02 16:00:46 -07003f02362404adfaf575b64ca103c765e888576d14remove cheyenne from archive_baselinesedittest/system/archive_baseline.sh
- Externals.cfg8f6573db765daa31595197005e31fd2f2a5569af1704314604000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduUpdate CMEPS in Externals.cfg
2024-01-03 13:43:24 -07008f6573db765daa31595197005e31fd2f2a5569afUpdate CMEPS in Externals.cfgeditExternals.cfg
- bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/build-namelist1d5007eb449e352a464489c8f857bfa34cc652131704315355000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUWM changes to namelist files for new clubb external
2024-01-03 13:55:55 -07001d5007eb449e352a464489c8f857bfa34cc65213UWM changes to namelist files for new clubb externaleditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xml
- cime_config/testdefs/testlist_cam.xml24f45ce7a750d11a438b1b50d753fdeee3baebb71704478886000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduIncreased wallclock time for one test on derecho
2024-01-05 11:21:26 -070024f45ce7a750d11a438b1b50d753fdeee3baebb7Increased wallclock time for one test on derechoeditcime_config/testdefs/testlist_cam.xml
- Externals.cfga8a92e6817953232f159135d9a4875fd5a3d88fa1704481778000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho5.hsn.de.hpc.ucar.eduupdate cime external
2024-01-05 12:09:38 -0700a8a92e6817953232f159135d9a4875fd5a3d88faupdate cime externaleditExternals.cfg
- doc/ChangeLog9249c0c6abe13a8aaff5032f27ec973138a7faf61704483635000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFinalize ChangeLog
2024-01-05 12:40:35 -07009249c0c6abe13a8aaff5032f27ec973138a7faf6Finalize ChangeLogeditdoc/ChangeLog
- src/physics/cam/clubb_intr.F90466d2a48b483f5751e80a4bca49023e71dc5864d1704917185000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduMerged in UWM code changes to clubb_intr
2024-01-10 13:06:25 -0700466d2a48b483f5751e80a4bca49023e71dc5864dMerged in UWM code changes to clubb_intreditsrc/physics/cam/clubb_intr.F90
- src/physics/cam/subcol_SILHS.F90f0f446da1baa55fd8d0e5a1110c58e1a83216a9a1705000131000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUWM updates for SILHS
2024-01-11 12:08:51 -0700f0f446da1baa55fd8d0e5a1110c58e1a83216a9aUWM updates for SILHSeditsrc/physics/cam/subcol_SILHS.F90
- src/physics/cam/rk_stratiform.F90src/physics/cam/convect_shallow.F90src/physics/spcam/crmclouds_camaerosols.F90src/physics/cam/cloud_fraction.F90src/physics/cam/macrop_driver.F90src/physics/cam/zm_conv_intr.F90bdb36e6042dc86bcfc86c42fbeb9944165ff04e41705015578000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduOnly pass ncols to ZM routines
2024-01-11 16:26:18 -0700bdb36e6042dc86bcfc86c42fbeb9944165ff04e4Only pass ncols to ZM routineseditsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/rk_stratiform.F90editsrc/physics/cam/cloud_fraction.F90editsrc/physics/cam/zm_conv_intr.F90editsrc/physics/spcam/crmclouds_camaerosols.F90editsrc/physics/cam/macrop_driver.F90
- Externals_CAM.cfg8e3ec85cd5bcc49bc5002ca3e9da859fb23b841b1705016096000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduPoint to new CLUBB External
2024-01-11 16:34:56 -07008e3ec85cd5bcc49bc5002ca3e9da859fb23b841bPoint to new CLUBB ExternaleditExternals_CAM.cfg
- cime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cambld/namelist_files/namelist_definition.xmlcime_config/usermods_dirs/scam_mandatory/shell_commandsbld/namelist_files/namelist_defaults_cam.xmle3c100607ead4ddc443f8387200adf1e2f0a838b1705091858000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFew more small changes from larson-group
2024-01-12 13:37:38 -0700e3c100607ead4ddc443f8387200adf1e2f0a838bFew more small changes from larson-groupeditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmleditcime_config/usermods_dirs/scam_mandatory/shell_commands
- bld/configure3558a95178d9a2a2abea6bf88d2e1309f836f3261705612896000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/configure
Remove redundant/over limiting CCP definitions for GEOS-Chem
Co-authored-by: Brian Eaton <eaton@ucar.edu>
2024-01-18 16:21:36 -05003558a95178d9a2a2abea6bf88d2e1309f836f326Update bld/configureeditbld/configure
- bld/configure14b6813e931f7a4622c5175ca007d9c371ea76d71705613839000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduClean up GEOS-Chem code in configure based on suggestions from Brian Easton
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-18 14:37:19 -070014b6813e931f7a4622c5175ca007d9c371ea76d7Clean up GEOS-Chem code in configure based on suggestions from Brian Eastoneditbld/configure
- src/chemistry/modal_aero/modal_aero_convproc.F90Externals_CAM.cfgsrc/physics/cam/zm_conv_intr.F902171b0154df5ba2a0508e7cbc3a1f28a6671efc41705702802000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress final reviewer comments
2024-01-19 15:20:02 -07002171b0154df5ba2a0508e7cbc3a1f28a6671efc4address final reviewer commentseditsrc/chemistry/modal_aero/modal_aero_convproc.F90editExternals_CAM.cfgeditsrc/physics/cam/zm_conv_intr.F90
- cime_config/testdefs/testlist_cam.xmlf2dae331c1ab706a3f0ca0973ebfa605b3743b8d1705703253000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove CAM3 test since no longer supported
2024-01-19 15:27:33 -0700f2dae331c1ab706a3f0ca0973ebfa605b3743b8dRemove CAM3 test since no longer supportededitcime_config/testdefs/testlist_cam.xml
- bld/namelist_files/namelist_definition.xmlsrc/chemistry/geoschem/chemistry.F90bld/build-namelistcime_config/config_component.xml6319c77344c79f6ec393dbc4dfc8bb27612624f51706028011000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unnecessary changes made for GEOS-Chem; minor bug fix for GNU
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-23 09:40:11 -07006319c77344c79f6ec393dbc4dfc8bb27612624f5Remove unnecessary changes made for GEOS-Chem; minor bug fix for GNUeditcime_config/config_component.xmleditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/namelist_definition.xmleditbld/build-namelist
- src/chemistry/modal_aero/modal_aero_convproc.F9050f20f4487f2f9d3132c697ab4484e33bece1b0e1706035323000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing ncol declaration
2024-01-23 11:42:03 -070050f20f4487f2f9d3132c697ab4484e33bece1b0eAdd missing ncol declarationeditsrc/chemistry/modal_aero/modal_aero_convproc.F90
- src/dynamics/se/dycore/fvm_reconstruction_mod.F90src/dynamics/se/dycore/fvm_mapping.F90bld/build-namelistsrc/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/fvm_control_volume_mod.F90src/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/dynamics/se/dp_coupling.F90bld/namelist_files/namelist_definition.xmlsrc/dynamics/se/gravity_waves_sources.F90src/dynamics/se/dycore/control_mod.F90src/physics/cam/vertical_diffusion.F9009f38f9a04a8f40441a74b4d5caf4edfb9b3d0981706046022000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduscience-optimized dycore - stabilize WACCM
2024-01-23 14:40:22 -070009f38f9a04a8f40441a74b4d5caf4edfb9b3d098science-optimized dycore - stabilize WACCMeditsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mod.F90editsrc/dynamics/se/gravity_waves_sources.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/se/dycore/control_mod.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore/fvm_control_volume_mod.F90editsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90editbld/build-namelisteditsrc/dynamics/se/dycore/prim_advection_mod.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/dynamics/se/dyn_grid.F90editsrc/physics/cam/vertical_diffusion.F90editbld/namelist_files/namelist_definition.xml
- doc/ChangeLogbd1f0047ccd5630c571a24ba941f6b9c07a6d5481706054184000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_3_146
2024-01-23 16:56:24 -0700bd1f0047ccd5630c571a24ba941f6b9c07a6d548ChangeLog for cam6_3_146editdoc/ChangeLog
- Externals_CAM.cfgfd8fa8e6141cf983d806adcc95e2d186205441951706109565000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate RRTMGP externals
2024-01-24 10:19:25 -0500fd8fa8e6141cf983d806adcc95e2d18620544195update RRTMGP externalseditExternals_CAM.cfg
- src/physics/cam/clubb_intr.F90bld/namelist_files/namelist_defaults_cam.xmla019b233197289b2288cd74573ead9c3710a63831706128016000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing some review comments
2024-01-24 13:26:56 -0700a019b233197289b2288cd74573ead9c3710a6383Addressing some review commentseditsrc/physics/cam/clubb_intr.F90editbld/namelist_files/namelist_defaults_cam.xml
- src/dynamics/se/dp_coupling.F902312bef838b7ed2d571a1dd480f2bd4ca9de62531706299223000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduresolve issue #864 (qneg)
2024-01-26 13:00:23 -07002312bef838b7ed2d571a1dd480f2bd4ca9de6253resolve issue #864 (qneg)editsrc/dynamics/se/dp_coupling.F90
- bld/namelist_files/namelist_defaults_cam.xml00c09511d8d0fa88966a8abd8e39c8129c8727af1706299324000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange default topo file for ne30gp3 (read in PHIS in GLL grid); remove
unused pg4 topo files
2024-01-26 13:02:04 -070000c09511d8d0fa88966a8abd8e39c8129c8727afchange default topo file for ne30gp3 (read in PHIS in GLL grid); removeeditbld/namelist_files/namelist_defaults_cam.xml
- src/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90e71a057de6f269c77cd12d108509889c2b9fc22d1706634403000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove ifdef old_cam
2024-01-30 10:06:43 -0700e71a057de6f269c77cd12d108509889c2b9fc22dremove ifdef old_cameditsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mod.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dyn_grid.F90
- bld/configure33012678a8af030be35ce655e3a4e61eb3c5edd91706635090000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRevert setting GEOS-Chem $chem_cppdefs to earlier in configure
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-30 10:18:10 -070033012678a8af030be35ce655e3a4e61eb3c5edd9Revert setting GEOS-Chem $chem_cppdefs to earlier in configureeditbld/configure
- bld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xml9a4144a7ed59ca943ae29074b75029d01b25538b1706635119000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove project paths to GEOS-Chem inputs; now stored in inputdata
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-30 10:18:39 -07009a4144a7ed59ca943ae29074b75029d01b25538bRemove project paths to GEOS-Chem inputs; now stored in inputdataeditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xml
- src/dynamics/se/dp_coupling.F90a4d2a3a5dd2b399a8ac22f3a05b26165e8b97ae01706636545000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduforgot to remove ifndef old_cam
2024-01-30 10:42:25 -0700a4d2a3a5dd2b399a8ac22f3a05b26165e8b97ae0forgot to remove ifndef old_cameditsrc/dynamics/se/dp_coupling.F90
- src/dynamics/se/dycore/fvm_reconstruction_mod.F907627b26f9ff263e3fe435565806e93505f5db6481706636858000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove comment
2024-01-30 10:47:38 -07007627b26f9ff263e3fe435565806e93505f5db648remove commenteditsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90
- src/dynamics/se/dycore/fvm_reconstruction_mod.F90ea7da3216099805d0ce9b8b5d89993f10f2190021706636942000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix previous commit
2024-01-30 10:49:02 -0700ea7da3216099805d0ce9b8b5d89993f10f219002fix previous commiteditsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90
- src/dynamics/se/dyn_comp.F90ed72e9a97f727573a7dfc500bf63008b4c1bf1f31706637096000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove ifndef old_cam
2024-01-30 10:51:36 -0700ed72e9a97f727573a7dfc500bf63008b4c1bf1f3remove ifndef old_cameditsrc/dynamics/se/dyn_comp.F90
- src/dynamics/se/dyn_comp.F908bbc109a28147a4068864cc9390cb289dfc0918b1706637150000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educomplete previous commit
2024-01-30 10:52:30 -07008bbc109a28147a4068864cc9390cb289dfc0918bcomplete previous commiteditsrc/dynamics/se/dyn_comp.F90
- doc/ChangeLogc809163147e15e915da95356a5eba23588a8ff0e1706638136000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd changelog message
2024-01-30 11:08:56 -0700c809163147e15e915da95356a5eba23588a8ff0eadd changelog messageeditdoc/ChangeLog
- doc/ChangeLog648368f93b38e252cc3f9411f6e9da26968c5eaa1706638386000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor modification to changelog
2024-01-30 11:13:06 -0700648368f93b38e252cc3f9411f6e9da26968c5eaaminor modification to changelogeditdoc/ChangeLog
- cime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camsrc/physics/cam/clubb_intr.F90544e33c363741892a77552f11ee250bf330e84a71706652987000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing more initial review comments
2024-01-30 15:16:27 -0700544e33c363741892a77552f11ee250bf330e84a7Addressing more initial review commentseditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditsrc/physics/cam/clubb_intr.F90
- cime_config/testdefs/testlist_cam.xmlc18380c179a758804ecf437e7f4c91f1bd9fcf6b1706653621000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdated GEOs-Chem tests from cheyenne to derecho
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-30 15:27:01 -0700c18380c179a758804ecf437e7f4c91f1bd9fcf6bUpdated GEOs-Chem tests from cheyenne to derechoeditcime_config/testdefs/testlist_cam.xml
- cime_config/testdefs/testlist_cam.xml5d05e8c5320c752006a4fb0248ce6206cd2c730e1706654058000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd categories prealpha and aux_cam to all GEOS-Chem compset tests
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-30 15:34:18 -07005d05e8c5320c752006a4fb0248ce6206cd2c730eAdd categories prealpha and aux_cam to all GEOS-Chem compset testseditcime_config/testdefs/testlist_cam.xml
- bld/build-namelist5fa370c9c6bfc17dcaffbf3bd6625f400af23dc41706714260000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduDelete redundant setting of deposition lists in namelists
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-31 08:17:40 -07005fa370c9c6bfc17dcaffbf3bd6625f400af23dc4Delete redundant setting of deposition lists in namelistseditbld/build-namelist
- cime_config/testdefs/testlist_cam.xml28412bfe7f7eff39c5e870a3e26012dabb333c451706714543000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduReduce GEOS-Chem tests to one aux_cam and one prealpha across two compsets
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-31 08:22:23 -070028412bfe7f7eff39c5e870a3e26012dabb333c45Reduce GEOS-Chem tests to one aux_cam and one prealpha across two compsetseditcime_config/testdefs/testlist_cam.xml
- src/physics/cam/clubb_intr.F9042a6316ad3c776e9951175cae91752ceef7a68df1706733029000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFixed some oopses
2024-01-31 13:30:29 -070042a6316ad3c776e9951175cae91752ceef7a68dfFixed some oopseseditsrc/physics/cam/clubb_intr.F90
- cime_config/testdefs/testlist_cam.xml40371e470698906677ec4d3835248ba1dbdc06de1706737866000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange FCnudged_GC derecho test to not use zonal mean nudging
I previously changed the test to zonal mean nudging when updating from
cheyenne to derecho. Apparently the compset is not set up to do this and
I therefore reverted to the previous test which is basic nuging.
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-01-31 14:51:06 -070040371e470698906677ec4d3835248ba1dbdc06deChange FCnudged_GC derecho test to not use zonal mean nudgingeditcime_config/testdefs/testlist_cam.xml
- src/physics/cam/slingo_liq_optics.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/rrtmg/radiation.F90src/physics/cam/oldcloud_optics.F90src/physics/cam/slingo.F90bld/configuredoc/ChangeLogsrc/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/cam/ebert_curry.F90src/physics/cam/oldcloud.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry_ice_optics.F90a3571bc819dfe8cb40e5e8a80b23a41e79e7a5fd1706747928000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments
2024-01-31 19:38:48 -0500a3571bc819dfe8cb40e5e8a80b23a41e79e7a5fdaddress review commentseditcime_config/testdefs/testlist_cam.xmldeletesrc/physics/cam/ebert_curry.F90editsrc/physics/cam/cloud_rad_props.F90addsrc/physics/cam/ebert_curry_ice_optics.F90deletesrc/physics/cam/oldcloud.F90deletesrc/physics/cam/slingo.F90addsrc/physics/cam/slingo_liq_optics.F90editbld/configureeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/mcica_subcol_gen.F90editsrc/physics/rrtmgp/radconstants.F90addsrc/physics/cam/oldcloud_optics.F90editsrc/physics/rrtmg/radiation.F90editdoc/ChangeLog
- test/system/TR8.shffec5d1e2301aa8a93197970e5baf53c186d35991706801711000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduskip over geoschem in r8 kind checker
2024-02-01 08:35:11 -0700ffec5d1e2301aa8a93197970e5baf53c186d3599skip over geoschem in r8 kind checkeredittest/system/TR8.sh
- doc/ChangeLoga5e78df39702959a7dd69d504927bdd69f98934d1706805432000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate Changelog
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
2024-02-01 09:37:12 -0700a5e78df39702959a7dd69d504927bdd69f98934dUpdate Changelogeditdoc/ChangeLog
- cime_config/testdefs/testlist_cam.xml4442c2a2a783ba65be5bd519c67339530a2c9f4f1706806633000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude commit and time limit to goes-chem tests
2024-02-01 09:57:13 -07004442c2a2a783ba65be5bd519c67339530a2c9f4finclude commit and time limit to goes-chem testseditcime_config/testdefs/testlist_cam.xml
- doc/ChangeLog86720ccfd55278efd108ae06c58dc635c63823d11706890106000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangLog
2024-02-02 09:08:26 -070086720ccfd55278efd108ae06c58dc635c63823d1update ChangLogeditdoc/ChangeLog
- bld/namelist_files/namelist_defaults_cam.xml26e6306f758e2d547862dab70ba90b9f25c9921e1707172696000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate topo file path to official inputdata repo path in namelist defaults file.
2024-02-05 15:38:16 -070026e6306f758e2d547862dab70ba90b9f25c9921eUpdate topo file path to official inputdata repo path in namelist defaults file.editbld/namelist_files/namelist_defaults_cam.xml
- src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90ccb49739c8ca84ea22802ebd720d88e7185e33d81707232399000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduuse broadband flux objects for clear-sky calcs
2024-02-06 10:13:19 -0500ccb49739c8ca84ea22802ebd720d88e7185e33d8use broadband flux objects for clear-sky calcseditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90
- src/physics/rrtmgp/rrtmgp_inputs.F90doc/ChangeLogtest/system/TR8.sh0ac117364976e955f497189c153f325f00c54ba31707242422000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments
2024-02-06 13:00:22 -05000ac117364976e955f497189c153f325f00c54ba3address review commentsedittest/system/TR8.sheditsrc/physics/rrtmgp/rrtmgp_inputs.F90editdoc/ChangeLog
- src/physics/rrtmgp/rrtmgp_inputs.F90bld/namelist_files/namelist_defaults_cam.xmle6f1f709bce92c5b7492f5fd173eedd253d355711707269559000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix filename in namelist defaults file
2024-02-06 20:32:39 -0500e6f1f709bce92c5b7492f5fd173eedd253d35571fix filename in namelist defaults fileeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/rrtmgp/rrtmgp_inputs.F90
- Externals.cfgeca1a90650308998e710ed9e272527cc9f5929c71707349164000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate externals to match alpha17a
2024-02-07 16:39:24 -0700eca1a90650308998e710ed9e272527cc9f5929c7update externals to match alpha17aeditExternals.cfg
- cime_config/buildnmlcime_config/buildlib26aee68ad5afbca0f3af46fd09d8c7396aafd38b1707415853000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRemove use of deprecated 'imp' module in python scripts (Github issue #970).
2024-02-08 11:10:53 -070026aee68ad5afbca0f3af46fd09d8c7396aafd38bRemove use of deprecated 'imp' module in python scripts (Github issue #970).editcime_config/buildnmleditcime_config/buildlib
- src/physics/cam/slingo_liq_optics.F90src/physics/cam/cospsimulator_intr.F90src/physics/camrt/radsw.F90src/physics/rrtmg/radiation.F90src/physics/rrtmg/aer_src/rrtmg_sw_reftra.f90bld/configuresrc/physics/cam/aer_rad_props.F90src/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmg/radsw.F90src/physics/camrt/radiation.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry_ice_optics.F9029da94d36769ec616148741650ca9a9d8a35b43b1707835247000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments
2024-02-13 09:40:47 -050029da94d36769ec616148741650ca9a9d8a35b43baddress review commentseditsrc/physics/cam/cospsimulator_intr.F90editsrc/physics/rrtmgp/mcica_subcol_gen.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/cam/slingo_liq_optics.F90editsrc/physics/rrtmg/radsw.F90editsrc/physics/camrt/radiation.F90editsrc/physics/cam/ebert_curry_ice_optics.F90editbld/configureeditsrc/physics/camrt/radsw.F90editsrc/physics/rrtmg/aer_src/rrtmg_sw_reftra.f90editsrc/physics/cam/cloud_rad_props.F90editsrc/physics/cam/aer_rad_props.F90editsrc/physics/rrtmg/radiation.F90
- Externals.cfgea9aaa2d82868bccaa7e1efe775ebad6816276db1708361713000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate cime tag
2024-02-19 09:55:13 -0700ea9aaa2d82868bccaa7e1efe775ebad6816276dbUpdate cime tageditExternals.cfg
- src/dynamics/se/dycore/fvm_mapping.F9043f4b095283f0d64645f350febe9897bfe8c8bc51708364645000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edustat check
2024-02-19 10:44:05 -070043f4b095283f0d64645f350febe9897bfe8c8bc5stat checkeditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/fvm_mapping.F90bf7635adc8f1b7a6b67b53952bc7cc10360fcc5e1708364747000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90
Co-authored-by: Jesse Nusbaumer <nusbaume@ucar.edu>
2024-02-19 10:45:47 -0700bf7635adc8f1b7a6b67b53952bc7cc10360fcc5eUpdate src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/global_norms_mod.F905338d363498c6ec9fd85bd0412cbd672e04eac9e1708365518000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange comment
2024-02-19 10:58:38 -07005338d363498c6ec9fd85bd0412cbd672e04eac9echange commenteditsrc/dynamics/se/dycore/global_norms_mod.F90
- src/dynamics/se/dyn_comp.F9044703192846364336590b3d9548697d6c4bec9471708365863000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor mod
2024-02-19 11:04:23 -070044703192846364336590b3d9548697d6c4bec947minor modeditsrc/dynamics/se/dyn_comp.F90
- src/dynamics/se/dycore/fvm_mapping.F90379f23fa9ddf5d115d2aadb37450567f62e09d1f1708365966000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix compiltation error
2024-02-19 11:06:06 -0700379f23fa9ddf5d115d2aadb37450567f62e09d1ffix compiltation erroreditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dyn_grid.F9096e163ce63838d7dd1e077f53252e3233c5248fc1708366040000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor mod
2024-02-19 11:07:20 -070096e163ce63838d7dd1e077f53252e3233c5248fcminor modeditsrc/dynamics/se/dyn_grid.F90
- src/physics/cam/vertical_diffusion.F90597177a6d704324e7111e4a0ec952e637413d49a1708366142000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/physics/cam/vertical_diffusion.F90
Co-authored-by: Jesse Nusbaumer <nusbaume@ucar.edu>
2024-02-19 11:09:02 -0700597177a6d704324e7111e4a0ec952e637413d49aUpdate src/physics/cam/vertical_diffusion.F90editsrc/physics/cam/vertical_diffusion.F90
- src/dynamics/se/dyn_comp.F9084db8635860c9f2aebbde827d8ab086e62be060b1708366336000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor clean-up
2024-02-19 11:12:16 -070084db8635860c9f2aebbde827d8ab086e62be060bminor clean-upeditsrc/dynamics/se/dyn_comp.F90
- src/dynamics/se/dycore/fvm_mapping.F9015826b3809d4195544f808549168eedaf008d6631708366440000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2024-02-19 11:14:00 -070015826b3809d4195544f808549168eedaf008d663Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/fvm_mapping.F90fdac7d4185a31f2d934b8d7fe85fd933a7a2b3491708366452000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2024-02-19 11:14:12 -0700fdac7d4185a31f2d934b8d7fe85fd933a7a2b349Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/fvm_mapping.F90adb4a83b25d1e2439a71b21d9de26b4e4cc567ad1708366589000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd comment
2024-02-19 11:16:29 -0700adb4a83b25d1e2439a71b21d9de26b4e4cc567adadd commenteditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/fvm_mapping.F90ff0e805b899a3a85ad64a72b1e1b35d866110f151708366686000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd comment
2024-02-19 11:18:06 -0700ff0e805b899a3a85ad64a72b1e1b35d866110f15add commenteditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dp_coupling.F905fa87c20fc7cb9aaea0f128b0869c3426311e7e61708366773000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dp_coupling.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2024-02-19 11:19:33 -07005fa87c20fc7cb9aaea0f128b0869c3426311e7e6Update src/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dp_coupling.F90
- src/dynamics/se/dp_coupling.F90eeae0a7ac896f82e924564d093cbb0eaca48dd861708366809000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dp_coupling.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2024-02-19 11:20:09 -0700eeae0a7ac896f82e924564d093cbb0eaca48dd86Update src/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dp_coupling.F90
- src/dynamics/se/dycore/fvm_mapping.F90b91b56934b221f9ad1f3d8eacbe25aaded5f48301708366859000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90
Co-authored-by: Francis Vitt <fvitt@ucar.edu>
2024-02-19 11:20:59 -0700b91b56934b221f9ad1f3d8eacbe25aaded5f4830Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/fvm_mapping.F90be0597fb9cb25989b4304457245205d068a03ca81708367052000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd description
2024-02-19 11:24:12 -0700be0597fb9cb25989b4304457245205d068a03ca8add descriptioneditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/global_norms_mod.F90bb4ba338824ae681e2634b19718b85e4653b238e1708367267000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edusimplify code
2024-02-19 11:27:47 -0700bb4ba338824ae681e2634b19718b85e4653b238esimplify codeeditsrc/dynamics/se/dycore/global_norms_mod.F90
- src/dynamics/se/dycore/fvm_mapping.F90e32a843446ed92f0808d512b1a7afa807fc0cef11708367354000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix
2024-02-19 11:29:14 -0700e32a843446ed92f0808d512b1a7afa807fc0cef1fixeditsrc/dynamics/se/dycore/fvm_mapping.F90
- src/dynamics/se/dycore/prim_driver_mod.F904f1f577ca83f452ae21b325d74226657decfbbc91708367444000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix indentation
2024-02-19 11:30:44 -07004f1f577ca83f452ae21b325d74226657decfbbc9fix indentationeditsrc/dynamics/se/dycore/prim_driver_mod.F90
- src/physics/cam/vertical_diffusion.F901ba50bbac4db752d6477d72d70dff8eeeb656ce91708367689000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edureduce code length
2024-02-19 11:34:49 -07001ba50bbac4db752d6477d72d70dff8eeeb656ce9reduce code lengtheditsrc/physics/cam/vertical_diffusion.F90
- src/dynamics/se/dp_coupling.F908a20418cb3b101de40ef0058ff7b8d213405b8dd1708368031000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix compilation error
2024-02-19 11:40:31 -07008a20418cb3b101de40ef0058ff7b8d213405b8ddfix compilation erroreditsrc/dynamics/se/dp_coupling.F90
- src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dycore_budget.F90cd12ccc5aac5ee8808a16c39c4a3733f869c73211708380732000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix dycore budgets
2024-02-19 15:12:12 -0700cd12ccc5aac5ee8808a16c39c4a3733f869c7321fix dycore budgetseditsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore_budget.F90
- cime_config/testdefs/testlist_cam.xml02abc17857e996b652a24f3ab15d85f9a440d1971708388499000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments
2024-02-19 19:21:39 -050002abc17857e996b652a24f3ab15d85f9a440d197address review commentseditcime_config/testdefs/testlist_cam.xml
- cime_config/SystemTests/tmc.py89a46e6bf386a72a196f20331e09bb8d1425f66f1708471717000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate TMC test
2024-02-20 16:28:37 -070089a46e6bf386a72a196f20331e09bb8d1425f66fUpdate TMC testeditcime_config/SystemTests/tmc.py
- doc/ChangeLog538a35673ef1f1a3b374f0cf10ca93c6b2a4b7dc1708541737000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2024-02-21 13:55:37 -0500538a35673ef1f1a3b374f0cf10ca93c6b2a4b7dcupdate ChangeLogeditdoc/ChangeLog
- Externals.cfgcime_config/testdefs/testlist_cam.xmlcime_config/buildnml2a08713a6c82a4babbf0390ae48742fc9d869c7d1708542816000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing tests
2024-02-21 12:13:36 -07002a08713a6c82a4babbf0390ae48742fc9d869c7dFix failing testseditExternals.cfgeditcime_config/buildnmleditcime_config/testdefs/testlist_cam.xml
- cime_config/testdefs/testlist_cam.xml7423b5a7628f162f1ef5f609c551ef67719d8daf1708551824000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd a couple more prealpha tests
2024-02-21 14:43:44 -07007423b5a7628f162f1ef5f609c551ef67719d8dafAdd a couple more prealpha testseditcime_config/testdefs/testlist_cam.xml
- doc/ChangeLog25155844c69fa2b72ed046e8c09c0e865e43cab51708623955000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_149
2024-02-22 10:45:55 -070025155844c69fa2b72ed046e8c09c0e865e43cab5Update ChangeLog for cam6_3_149editdoc/ChangeLog
- doc/ChangeLogsrc/dynamics/se/dycore/fvm_mapping.F90948b0a822c0d736fdf0bdb4fb3406ef6566274c71708639934000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd allocation checks and update ChangeLog.
2024-02-22 15:12:14 -0700948b0a822c0d736fdf0bdb4fb3406ef6566274c7Add allocation checks and update ChangeLog.editdoc/ChangeLogeditsrc/dynamics/se/dycore/fvm_mapping.F90
- doc/ChangeLogc4eb85c5841c8d6ee6e707a3798b34bb4a7706fb1708713639000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho6.hsn.de.hpc.ucar.educhangelog updates
2024-02-23 11:40:39 -0700c4eb85c5841c8d6ee6e707a3798b34bb4a7706fbchangelog updateseditdoc/ChangeLog
- src/dynamics/se/dycore/fvm_mapping.F90ea364f9d3de8a0c400d80f610b696e1e8a3db74f1708723006000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange allocation size
2024-02-23 14:16:46 -0700ea364f9d3de8a0c400d80f610b696e1e8a3db74fchange allocation sizeeditsrc/dynamics/se/dycore/fvm_mapping.F90
- bld/namelist_files/namelist_defaults_cam.xmlfc6af9b673352a7b0c20c03c6545b2eb8f7e14e01708725022000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate namelist settings
2024-02-23 14:50:22 -0700fc6af9b673352a7b0c20c03c6545b2eb8f7e14e0Update namelist settingseditbld/namelist_files/namelist_defaults_cam.xml
- src/physics/cam/vertical_diffusion.F9011a5276617e4b2e643b883352090f7b406e1fd421708726347000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edurestructure code
2024-02-23 15:12:27 -070011a5276617e4b2e643b883352090f7b406e1fd42restructure codeeditsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/vertical_diffusion.F9051478ad411b01f728970d4ed6d69d1774e29bf011709047679000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd 'allocated' check for kvm_sponge.
2024-02-27 08:27:59 -070051478ad411b01f728970d4ed6d69d1774e29bf01Add 'allocated' check for kvm_sponge.editsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/vertical_diffusion.F906719ede7ee62e6e8f0663694e027e430ab83da7f1709047889000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRe-add mistakenly deleted if statement.
2024-02-27 08:31:29 -07006719ede7ee62e6e8f0663694e027e430ab83da7fRe-add mistakenly deleted if statement.editsrc/physics/cam/vertical_diffusion.F90
- src/physics/cam/vertical_diffusion.F90e48c32ed6a6bd98b0400f98dd697f8052ab03a391709055340000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduDon't allocate kvm_sponge if it is not being used.
2024-02-27 10:35:40 -0700e48c32ed6a6bd98b0400f98dd697f8052ab03a39Don't allocate kvm_sponge if it is not being used.editsrc/physics/cam/vertical_diffusion.F90
- Externals.cfgsrc/dynamics/fv3/dimensions_mod.F90src/dynamics/fv3/restart_dynamics.F90src/dynamics/fv3/dyn_comp.F90cime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/shell_commandssrc/dynamics/fv3/dyn_grid.F90bld/configuresrc/dynamics/fv3/microphys/module_mp_radar.F90src/dynamics/fv3/microphys/gfdl_cloud_microphys.F90src/dynamics/fv3/dycore_budget.F90src/dynamics/fv3/dp_coupling.F90src/dynamics/fv3/interp_mod.F90src/dynamics/fv3/dycore.F90cime_config/config_pes.xmltest/system/TR8.shsrc/dynamics/fv3/Makefile.in.fv3src/dynamics/fv3/pmgrid.F90Externals_CAM.cfgsrc/dynamics/fv3/stepon.F90cime_config/buildlibsrc/dynamics/fv3/spmd_dyn.F90d902259009980c7637442aee5b214323a95856731709235877000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edufv3 updates to bring in more current fms tag. Created fv3 interface directory brought in as an external which points back to GFDL to get the fv3 library code
2024-02-29 12:44:37 -0700d902259009980c7637442aee5b214323a9585673fv3 updates to bring in more current fms tag. Created fv3 interface directory brought in as an external which points back to GFDL to get the fv3 library codedeletesrc/dynamics/fv3/dyn_grid.F90deletesrc/dynamics/fv3/stepon.F90deletesrc/dynamics/fv3/dycore_budget.F90deletesrc/dynamics/fv3/microphys/module_mp_radar.F90deletesrc/dynamics/fv3/spmd_dyn.F90deletesrc/dynamics/fv3/microphys/gfdl_cloud_microphys.F90editbld/configuredeletesrc/dynamics/fv3/dp_coupling.F90deletesrc/dynamics/fv3/pmgrid.F90editcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/shell_commandsdeletesrc/dynamics/fv3/dyn_comp.F90edittest/system/TR8.shdeletesrc/dynamics/fv3/interp_mod.F90editExternals_CAM.cfgdeletesrc/dynamics/fv3/dimensions_mod.F90deletesrc/dynamics/fv3/Makefile.in.fv3editcime_config/buildlibeditExternals.cfgeditcime_config/config_pes.xmldeletesrc/dynamics/fv3/restart_dynamics.F90editcime_config/testdefs/testlist_cam.xmldeletesrc/dynamics/fv3/dycore.F90
- README_EXTERNALS22fa45e7afa026914e92a0ed156922e767899ddf1709237897000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove obsolete file README_EXTERNALS
2024-02-29 13:18:17 -070022fa45e7afa026914e92a0ed156922e767899ddfRemove obsolete file README_EXTERNALSdeleteREADME_EXTERNALS
- doc/ChangeLog7959ffe864c294ab7ac6c3c21993d73a8cfe00791709240149000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduChangeLog updates
2024-02-29 13:55:49 -07007959ffe864c294ab7ac6c3c21993d73a8cfe0079ChangeLog updateseditdoc/ChangeLog
- src/physics/cam/vertical_diffusion.F9052f7d5b414333faef5d925115e4c62ef4a499c3e1709331648000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix syntax error found during testing.
2024-03-01 15:20:48 -070052f7d5b414333faef5d925115e4c62ef4a499c3eFix syntax error found during testing.editsrc/physics/cam/vertical_diffusion.F90
- bld/namelist_files/namelist_defaults_cam.xml098b4c24dbea2ff0c93c0b9fac12c95b50f02aa21709762832000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edunamelist_default not setting WACCM-x variables correctly since
waccm_phys="1" is true for WACCM-x
2024-03-06 15:07:12 -0700098b4c24dbea2ff0c93c0b9fac12c95b50f02aa2namelist_default not setting WACCM-x variables correctly sinceeditbld/namelist_files/namelist_defaults_cam.xml
- src/physics/cam/clubb_intr.F90643c32790dbe9a74f2dc47a95f20a6000fa476f01709767185000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduConvert CLUBB error locations from rad to degrees
2024-03-06 16:19:45 -0700643c32790dbe9a74f2dc47a95f20a6000fa476f0Convert CLUBB error locations from rad to degreeseditsrc/physics/cam/clubb_intr.F90
- cime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cam918ae1d89261128618529fafda82cd12e3f3eaa91709767234000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate hist list for subcolumns and add clubb_diags test output to mg3 test defs
2024-03-06 16:20:34 -0700918ae1d89261128618529fafda82cd12e3f3eaa9Update hist list for subcolumns and add clubb_diags test output to mg3 test defseditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cam
- bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmle1f6bf07d02d4e0150051ca736d343f20e96a83c1709857070000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments
2024-03-07 17:17:50 -0700e1f6bf07d02d4e0150051ca736d343f20e96a83cAddressing review commentseditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xml
- bld/configure5aa24d698204846944b5d01b3f803745253ae7441709933109000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix so that all three flavors of intel compiler are recognized on derecho
2024-03-08 14:25:09 -07005aa24d698204846944b5d01b3f803745253ae744fix so that all three flavors of intel compiler are recognized on derechoeditbld/configure
- src/physics/cam/zm_conv_intr.F9098f4f8d36df4e7ceb2732c094fd31eddc035ea541709939795000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduSplit wind variable into two variables
2024-03-08 16:16:35 -070098f4f8d36df4e7ceb2732c094fd31eddc035ea54Split wind variable into two variableseditsrc/physics/cam/zm_conv_intr.F90
- bld/configuree8933a9a8266cfdbd068964a49f6e34b5c47a6501709940967000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRename directory to zhang_mcfarlane
2024-03-08 16:36:07 -0700e8933a9a8266cfdbd068964a49f6e34b5c47a650Rename directory to zhang_mcfarlaneeditbld/configure
- src/physics/cam/zm_conv_intr.F9049674280030e6fbc6bc90464feee3e3438aa96741709944665000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduPut back in namelist logging
2024-03-08 17:37:45 -070049674280030e6fbc6bc90464feee3e3438aa9674Put back in namelist loggingeditsrc/physics/cam/zm_conv_intr.F90
- src/physics/cam/zm_conv_intr.F9075e68155bd1d00d36f9753f2abf5b6854554299a1710344214000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove jctop, jcbot from zm_convr_run calling list
2024-03-13 09:36:54 -060075e68155bd1d00d36f9753f2abf5b6854554299aRemove jctop, jcbot from zm_convr_run calling listeditsrc/physics/cam/zm_conv_intr.F90
- src/physics/cam_dev/physpkg.F90src/physics/cam/physpkg.F90src/physics/cam/cam_snapshot.F90Externals_CAM.cfgsrc/physics/cam_dev/cam_snapshot.F90src/physics/cam/convect_deep.F90src/physics/cam/zm_conv_intr.F908ea3da242a747b2f86c6d5ec39c23a816bff88451710369013000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove unused pflx variable and set placeholder tag for atmospheric_physics external
2024-03-13 16:30:13 -06008ea3da242a747b2f86c6d5ec39c23a816bff8845Remove unused pflx variable and set placeholder tag for atmospheric_physics externaleditsrc/physics/cam/physpkg.F90editExternals_CAM.cfgeditsrc/physics/cam/cam_snapshot.F90editsrc/physics/cam/convect_deep.F90editsrc/physics/cam_dev/cam_snapshot.F90editsrc/physics/cam/zm_conv_intr.F90editsrc/physics/cam_dev/physpkg.F90
- src/control/camsrfexch.F90src/physics/cam/cam_diagnostics.F90src/cpl/nuopc/atm_import_export.F90d080cb8350a938a13af9c887cc7c849bda327ff61710431265000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduUpdate U10 to be resolved wind; add variable for U10+gusts
2024-03-14 09:47:45 -0600d080cb8350a938a13af9c887cc7c849bda327ff6Update U10 to be resolved wind; add variable for U10+gustseditsrc/control/camsrfexch.F90editsrc/physics/cam/cam_diagnostics.F90editsrc/cpl/nuopc/atm_import_export.F90
- src/physics/cam/zm_conv_intr.F90ce54561bd835f5b2178d97bd87284fb585e8f3911710441942000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduMove a couple of outfld calls
2024-03-14 12:45:42 -0600ce54561bd835f5b2178d97bd87284fb585e8f391Move a couple of outfld callseditsrc/physics/cam/zm_conv_intr.F90
- src/dynamics/se/dycore/se_dyn_time_mod.F90323976618c01a949295585c2dc903d58e57a3ee81710646155000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix restart issue
2024-03-16 21:29:15 -0600323976618c01a949295585c2dc903d58e57a3ee8fix restart issueeditsrc/dynamics/se/dycore/se_dyn_time_mod.F90
- src/chemistry/mozart/sv_decomp.F90src/physics/waccm/efield.F904da7f9c9d5d0579542041292010c740309f394dd1710775632000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduUse lapack routine to solve matrix eq for E-field boundary calc
deleted: src/chemistry/mozart/sv_decomp.F90
modified: src/physics/waccm/efield.F90
2024-03-18 09:27:12 -06004da7f9c9d5d0579542041292010c740309f394ddUse lapack routine to solve matrix eq for E-field boundary calcdeletesrc/chemistry/mozart/sv_decomp.F90editsrc/physics/waccm/efield.F90
- src/dynamics/se/dycore/element_mod.F90src/dynamics/se/dycore/prim_init.F90673f1808880bb1f2fe2d7b6dadc6cca50261dfd71710778292000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edusave memory by dynamic allocation of elem% variables
2024-03-18 10:11:32 -0600673f1808880bb1f2fe2d7b6dadc6cca50261dfd7save memory by dynamic allocation of elem% variableseditsrc/dynamics/se/dycore/element_mod.F90editsrc/dynamics/se/dycore/prim_init.F90
- src/physics/cam/zm_conv_intr.F90f386bc4bb9718575b9db162c76bc8980a28a65121710791160000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduSeparate four additional wind variables
2024-03-18 13:46:00 -0600f386bc4bb9718575b9db162c76bc8980a28a6512Separate four additional wind variableseditsrc/physics/cam/zm_conv_intr.F90
- src/physics/waccm/efield.F901cd5e5a76e5f3b825c191cea02b531f7f8d4b2341710800974000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinit ipiv with integer 0
2024-03-18 16:29:34 -06001cd5e5a76e5f3b825c191cea02b531f7f8d4b234init ipiv with integer 0editsrc/physics/waccm/efield.F90
- src/physics/waccm/efield.F90src/chemistry/utils/apex.F906ee3c9be5f5ba404d06793b8da57d0612f26f6011710851609000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educhanges for nag nan test
modified: src/chemistry/utils/apex.F90
modified: src/physics/waccm/efield.F90
2024-03-19 06:33:29 -06006ee3c9be5f5ba404d06793b8da57d0612f26f601changes for nag nan testeditsrc/physics/waccm/efield.F90editsrc/chemistry/utils/apex.F90
- bld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml7f642b688c62295245df256282a97c1b056d337b1710862402000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix issue with sd_waccmx_ma_cam6 use case
2024-03-19 09:33:22 -06007f642b688c62295245df256282a97c1b056d337bfix issue with sd_waccmx_ma_cam6 use caseeditbld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml
- src/dynamics/se/dycore/prim_init.F9058252b91f1935e1e2d7ce8601ab3545c39db716c1710881242000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix allocation errors found during testing.
2024-03-19 14:47:22 -060058252b91f1935e1e2d7ce8601ab3545c39db716cFix allocation errors found during testing.editsrc/dynamics/se/dycore/prim_init.F90
- src/control/cam_history.F90b7893ef1de5e4e309a66c9accee718060677b86b1710887491000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix to allow multiple monthly avg history files
2024-03-19 18:31:31 -0400b7893ef1de5e4e309a66c9accee718060677b86bfix to allow multiple monthly avg history fileseditsrc/control/cam_history.F90
- doc/ChangeLogac729892b98557f4d0b4b5eb3ab67a4adcc24dde1710944490000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry
2024-03-20 10:21:30 -0400ac729892b98557f4d0b4b5eb3ab67a4adcc24ddestart ChangeLog entryeditdoc/ChangeLog
- doc/ChangeLogf6cfc5acd3141f46230a0db2f231ded40daf48dd1711033691000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog
2024-03-21 11:08:11 -0400f6cfc5acd3141f46230a0db2f231ded40daf48ddupdate ChangeLogeditdoc/ChangeLog
- cime_config/buildnmlb20161cdda768b3d18f631ebb6333d00c45e2fc61711039591000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix typo
2024-03-21 10:46:31 -0600b20161cdda768b3d18f631ebb6333d00c45e2fc6Fix typoeditcime_config/buildnml
- src/dynamics/se/dycore/global_norms_mod.F90c4dc644eb743391f84b82f957af61099694bd0b81711056263000http://carson.math.uwm.edu/jenkins/user/peter.hjort.lauritzenpeter.hjort.lauritzenpeter.hjort.lauritzen@gmail.comfix bug on sponge settings for WACCM
2024-03-21 15:24:23 -0600c4dc644eb743391f84b82f957af61099694bd0b8fix bug on sponge settings for WACCMeditsrc/dynamics/se/dycore/global_norms_mod.F90
- src/chemistry/mozart/mo_jshort.F9021aece00994cfeb2c5fd895d319a85e0eb04da9a1711118399000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educode cleanup for O2 abs cross sections
modified: src/chemistry/mozart/mo_jshort.F90
2024-03-22 08:39:59 -060021aece00994cfeb2c5fd895d319a85e0eb04da9acode cleanup for O2 abs cross sectionseditsrc/chemistry/mozart/mo_jshort.F90
- bld/namelist_files/namelist_defaults_cam.xmlb4102ae46d48386f55e08e82c42f4b9782513e0e1711141802000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduadd one more location for setting of dust_emis_fact with SE dycore
2024-03-22 15:10:02 -0600b4102ae46d48386f55e08e82c42f4b9782513e0eadd one more location for setting of dust_emis_fact with SE dycoreeditbld/namelist_files/namelist_defaults_cam.xml
- cime_config/testdefs/testlist_cam.xmldoc/ChangeLog919cce51adcebf61eba635c2aeaaa61a42ce590b1711142067000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate FADIAB test to use ne5pg3 grid, and finalize ChangeLog.
2024-03-22 15:14:27 -0600919cce51adcebf61eba635c2aeaaa61a42ce590bUpdate FADIAB test to use ne5pg3 grid, and finalize ChangeLog.editcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLog
- doc/ChangeLogd2fe0de2bcabec10f4a0331199762ea0149001851711473902000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_153
2024-03-26 11:25:02 -0600d2fe0de2bcabec10f4a0331199762ea014900185Update ChangeLog for cam6_3_153editdoc/ChangeLog
- src/physics/cam/clubb_intr.F90a988a1439fc1fa6b3efc4962983b085625f061661711490003000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall bug fix
2024-03-26 15:53:23 -0600a988a1439fc1fa6b3efc4962983b085625f06166Small bug fixeditsrc/physics/cam/clubb_intr.F90
- Externals.cfg20bf3f1b0f9cead645c76bfa1c937bbeb25ac7271711650667000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS to get U10 changes and CDEPS needed to work with that version of CMEPS
2024-03-28 12:31:07 -060020bf3f1b0f9cead645c76bfa1c937bbeb25ac727Update CMEPS to get U10 changes and CDEPS needed to work with that version of CMEPSeditExternals.cfg
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cambld/namelist_files/namelist_definition.xmlad1c08ed02e508b6664b30f80efc2b42e47d8e2f1711653317000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduCLUBB diagnostics test update plus addressing Adams review
2024-03-28 13:15:17 -0600ad1c08ed02e508b6664b30f80efc2b42e47d8e2fCLUBB diagnostics test update plus addressing Adams revieweditbld/namelist_files/namelist_definition.xmleditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cam
- src/physics/cam/clubb_intr.F90708f652b11354b7899a60c011b41a1d9810ac7a81711754694000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRemove threadprivate calls for stats (not needed)
2024-03-29 17:24:54 -0600708f652b11354b7899a60c011b41a1d9810ac7a8Remove threadprivate calls for stats (not needed)editsrc/physics/cam/clubb_intr.F90
- cime_config/testdefs/testlist_cam.xml7ac0af54aa6964d06a1d03b2d33410265127ddcc1711754908000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate testlist to include a threaded FV test
2024-03-29 17:28:28 -06007ac0af54aa6964d06a1d03b2d33410265127ddccUpdate testlist to include a threaded FV testeditcime_config/testdefs/testlist_cam.xml
- src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F904e1b7fa4964d5ec4bfeb17051eeb631aa068475a1712004274000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddress review comments
2024-04-01 14:44:34 -06004e1b7fa4964d5ec4bfeb17051eeb631aa068475aAddress review commentseditsrc/physics/cam/micro_pumas_cam.F90editsrc/physics/cam_dev/micro_pumas_cam.F90
- cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_cam7a116b00c987e66b3981146a9d1a3aa57353ee2e1712010920000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRainbows testing added to aux_pumas tests, not aux_cam
2024-04-01 16:35:20 -06007a116b00c987e66b3981146a9d1a3aa57353ee2eRainbows testing added to aux_pumas tests, not aux_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/shell_commandseditcime_config/testdefs/testlist_cam.xml
- Externals.cfg33a77789de67b79ee0df781c9c65cebfc797f90f1712093511000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS and CDEPS to latest tags
2024-04-02 15:31:51 -060033a77789de67b79ee0df781c9c65cebfc797f90fUpdate CMEPS and CDEPS to latest tagseditExternals.cfg
- Externals.cfgead83ced07ad8fc9696e9da78acba201062edd691712174306000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS for bugfix for NAG
2024-04-03 13:58:26 -0600ead83ced07ad8fc9696e9da78acba201062edd69Update CMEPS for bugfix for NAGeditExternals.cfg
- doc/ChangeLoga078fe5570aa39792fdec7dc0b5f7a64ebaf04571712254559000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_154
2024-04-04 12:15:59 -0600a078fe5570aa39792fdec7dc0b5f7a64ebaf0457Update ChangeLog for cam6_3_154editdoc/ChangeLog
- cime_config/testdefs/testlist_cam.xml1f0c3103f798f331df957df2039e40645203b4ef1712870893000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduNew threaded test hitting wallclock limit in aux_cam suite. Increased limit
2024-04-11 15:28:13 -06001f0c3103f798f331df957df2039e40645203b4efNew threaded test hitting wallclock limit in aux_cam suite. Increased limiteditcime_config/testdefs/testlist_cam.xml
- doc/ChangeLogd2662b4313d423504fd0b23f95ad1a97cf80f1ae1712955135000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog
2024-04-12 14:52:15 -0600d2662b4313d423504fd0b23f95ad1a97cf80f1aeUpdate ChangeLogeditdoc/ChangeLog
- src/chemistry/mozart/mo_jshort.F90d1fa224ac89b788a4f657baf9756e6b2120dfaa31713210533000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduminor changes
modified: src/chemistry/mozart/mo_jshort.F90
2024-04-15 13:48:53 -0600d1fa224ac89b788a4f657baf9756e6b2120dfaa3minor changeseditsrc/chemistry/mozart/mo_jshort.F90
- src/chemistry/mozart/mo_jshort.F90c4d9066e795650ead6d6b2b1288e5791799b50b11713214540000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurename limit params
2024-04-15 14:55:40 -0600c4d9066e795650ead6d6b2b1288e5791799b50b1rename limit paramseditsrc/chemistry/mozart/mo_jshort.F90
- src/physics/cam/zm_conv_intr.F90aa6fa83552bb88b29b6f8ef25362849017ea02951713220710000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAddress reviewer comments
2024-04-15 16:38:30 -0600aa6fa83552bb88b29b6f8ef25362849017ea0295Address reviewer commentseditsrc/physics/cam/zm_conv_intr.F90
- bld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml47dfc51e2a4a0b126e1b7edbdfa8a91b938f7f551713278863000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse case sd_waccmx_ma_cam6 change for waccm_mad_mam5 chem
2024-04-16 08:47:43 -060047dfc51e2a4a0b126e1b7edbdfa8a91b938f7f55use case sd_waccmx_ma_cam6 change for waccm_mad_mam5 chemeditbld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml
- doc/ChangeLog830922b6c1cd0025f5962682be91e7c2d8f1dff81713280839000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft
2024-04-16 09:20:39 -0600830922b6c1cd0025f5962682be91e7c2d8f1dff8ChangeLog drafteditdoc/ChangeLog
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2024-04-16 10:43:17 -06005310c6ee3ca5acdff5d4b3bf453c5378a95fbfa2PR requested updateseditcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLogeditcime_config/buildlib
- doc/ChangeLog99d5fe281f7e970c35d0f234d996d820d5bd71831713292828000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2024-04-16 12:40:28 -060099d5fe281f7e970c35d0f234d996d820d5bd7183ChangeLog updateeditdoc/ChangeLog
- doc/ChangeLog0e2ee61409ab9389a6f1756aebb9931cc663115c1713294195000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update
2024-04-16 13:03:15 -06000e2ee61409ab9389a6f1756aebb9931cc663115cChangeLog updateeditdoc/ChangeLog
- cime_config/testdefs/testlist_cam.xmlfaa4c3bb62481c483701a2c215a7b1f39fe2485e1713299834000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comsmall correction in comment
2024-04-16 14:37:14 -0600faa4c3bb62481c483701a2c215a7b1f39fe2485esmall correction in commenteditcime_config/testdefs/testlist_cam.xml
- Externals_CAM.cfgf8d3a9369232e0546adcd18712a808fbfac971ee1713369846000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate external
2024-04-17 10:04:06 -0600f8d3a9369232e0546adcd18712a808fbfac971eeUpdate externaleditExternals_CAM.cfg
- doc/ChangeLog5e4cf3374d59d3544e8523300dcf444018847b281713377777000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.com[ 50 character, one line summary ]
Update ChangeLog
[ Description of the changes in this commit. It should be enough
information for someone not following this development to understand.
Lines should be wrapped at about 72 characters. ]
Test suite:
Test baseline:
Test namelist changes:
Test status: [bit for bit, roundoff, climate changing]
Fixes: [CIME Github issue #]
User interface changes?: [Yes (describe what changes), No]
Code review:
2024-04-17 12:16:17 -06005e4cf3374d59d3544e8523300dcf444018847b28[ 50 character, one line summary ]editdoc/ChangeLog
- Externals_CAM.cfg7e84a8b361523b7da65f4bf3ea51b439941f09f81713380962000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate to new PUMAS tag (fix gpu bugs)
2024-04-17 13:09:22 -06007e84a8b361523b7da65f4bf3ea51b439941f09f8Update to new PUMAS tag (fix gpu bugs)editExternals_CAM.cfg
- Externals.cfg49dae8b3076bd6af38f95290adef809257cf7f4c1713392865000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate cime external
2024-04-17 16:27:45 -060049dae8b3076bd6af38f95290adef809257cf7f4cUpdate cime externaleditExternals.cfg
- Externals.cfgaced0701562f125976563102a4cbece03606d7211713394529000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduNew ccs_config tag needed for GPU fixes
2024-04-17 16:55:29 -0600aced0701562f125976563102a4cbece03606d721New ccs_config tag needed for GPU fixeseditExternals.cfg
- Externals.cfgf5a3488da303ef51f96c30e9e5e6fbe3b76163721713482317000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate to newer cime tag
2024-04-18 17:18:37 -0600f5a3488da303ef51f96c30e9e5e6fbe3b7616372Update to newer cime tageditExternals.cfg
- .gitignore86da0930e18c099267deca3e9b8d618215ec048b1713566159000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix gitignore for FV3
2024-04-19 16:35:59 -060086da0930e18c099267deca3e9b8d618215ec048bFix gitignore for FV3edit.gitignore
- src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F9069a95aa349b977c2ab765e8c77cdeef4a4b38c8d1713809381000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddress Cheryls review comments
2024-04-22 12:09:41 -060069a95aa349b977c2ab765e8c77cdeef4a4b38c8dAddress Cheryls review commentseditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam/micro_pumas_cam.F90
- doc/ChangeLog963876d7f942598e943a6f971d9a181957972d641713809902000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd ChangeLog for cam6_3_158
2024-04-22 12:18:22 -0600963876d7f942598e943a6f971d9a181957972d64Add ChangeLog for cam6_3_158editdoc/ChangeLog
- Externals.cfgsrc/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F905acb455de407a789a94339c87b4dceb3f69fe0a71714081803000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduChanges to work with subcolumns and scm
2024-04-25 15:50:03 -06005acb455de407a789a94339c87b4dceb3f69fe0a7Changes to work with subcolumns and scmeditExternals.cfgeditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam/micro_pumas_cam.F90
- cime_config/testdefs/testlist_cam.xml925ba840c69471680f4e9d5ea223dfe7a27291461714150460000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate prealpha suite to include problematic test
2024-04-26 10:54:20 -0600925ba840c69471680f4e9d5ea223dfe7a2729146Update prealpha suite to include problematic testeditcime_config/testdefs/testlist_cam.xml
- doc/ChangeLogaa0f8a85e2f2f4d9becf5448bdd42f58de4f2eb11714161888000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog
2024-04-26 14:04:48 -0600aa0f8a85e2f2f4d9becf5448bdd42f58de4f2eb1Update ChangeLogeditdoc/ChangeLog
- bld/configure40703e8b5c3180f5ff534d9adcea295aeea9a9b51714680932000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRevert to support UWM build structure
2024-05-02 14:15:32 -060040703e8b5c3180f5ff534d9adcea295aeea9a9b5Revert to support UWM build structureeditbld/configure
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