Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit 4292a70f53a6b6c4eab864fe27b8fd9af5d86909 Author: Daniel Ebel Date: Mon Oct 12 17:10:53 2026 -0500 Fix arm97+l do expldiff rtm thlm+set edsclrm f early (#1386) * Do not force the thlm/rtm copies in the expldiff eddy-scalar solve" > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 # timeout=10 > git rev-list --no-walk 94ef64136637f6147dbab027398b682d3cb1d55f # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (MTso BFB Check) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. ccs_config up to date. fms up to date. Recursively checking out submodules of fms cdeps up to date. Recursively checking out submodules of cdeps share up to date. tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD cmeps up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute cice up to date. Recursively checking out submodules of cice tuv-x up to date. parallelio up to date. geoschem up to date. Recursively checking out submodules of geoschem Recursively checking out submodules of HEMCO clm up to date. Recursively checking out submodules of clm Recursively checking out submodules of src cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-13 03:35:42 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 03:35:43 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 03:35:43 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 03:35:43 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 03:35:43 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 03:35:43 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 03:35:43 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 03:35:43 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 03:35:43 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261013-033542 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261013-033542 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261013-033542 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261013-033542 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261013-033542 Component lnd build complete with 2472 warnings clm built in 105.249506 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261013-033542 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261013-033542 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261013-033542 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261013-033542 docn built in 1.608821 seconds Component rof build complete with 145 warnings mosart built in 11.098284 seconds Component ice build complete with 502 warnings cice built in 113.166779 seconds Component atm build complete with 6141 warnings cam built in 172.198141 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261013-033542 Component cesm exe build complete with 54 warnings Total build time: 363.303236 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-13 03:41:48 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 03:41:49 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 03:41:49 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 03:41:49 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 03:41:49 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 03:41:49 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 03:41:49 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 03:41:49 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 03:41:49 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-13 03:41:51 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 03:41:51 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 03:41:51 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 03:41:52 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 03:41:52 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 03:41:52 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 03:41:52 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 03:41:52 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 03:41:52 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3198-g268eaf7dc Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-13 04:00:16 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:00:16 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:00:16 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:00:17 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:00:17 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:00:17 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:00:17 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:00:17 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:00:17 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261013-040015 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261013-040015 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261013-040015 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261013-040015 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261013-040015 clm built in 0.939685 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261013-040015 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261013-040015 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261013-040015 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261013-040015 cice built in 1.008920 seconds mosart built in 1.092394 seconds docn built in 2.007920 seconds Component atm build complete with 155 warnings cam built in 18.504317 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261013-040015 Component cesm exe build complete with 11 warnings Total build time: 33.717752 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-13 04:00:52 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:00:53 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:00:53 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:00:54 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:00:54 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:00:54 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:00:54 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:00:54 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:00:54 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-13 04:00:56 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:00:56 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:00:56 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:00:57 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:00:57 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:00:57 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:00:57 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:00:57 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:00:57 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! -------- Variable Diff Summary -------- File 1: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 File 2: 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 Variables discovered (union): 1720 Excluded from comparison: FDL (uninitialized upper-level longwave diagnostic values in MTso) Excluded from comparison: time_written (wall-clock file-write time) Variables present in both files: 1718 Variables only in file 1: 0 Variables only in file 2: 0 Variables with differences (all dimensions): 0 Variables identical (all dimensions): 1718 Variables all-zero in file 1 (actual data): 138 Variables all-zero in file 2 (actual data): 138 Variables all-zero in both files (actual data): 138 Variables with >=2 dimensions tested (PASS/FAIL basis): 625 Variables with >=2 dimensions with differences: 0 Variables with >=2 dimensions identical: 625 Variables with >=2 dimensions all-zero in both files (actual data): 105 Variables skipped for PASS/FAIL (fewer than 2 dimensions in both files): 1093 PASS: No differences found in variables with >=2 dimensions. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . &&\nsed -i -e \'s/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_MTso"/\' -e \'s/ -silhs / /g\' -e \'s/ -psubcols \\$NUMSC//g\' -e \'s/ -DSILHS//g\' -e "s/^subcol_scheme = .*/subcol_scheme = \'off\'/" -e \'s/^use_subcol_microp = .*/use_subcol_microp = .false./\' -e \'s/^microp_uniform = .*/microp_uniform = .false./\' -e "s/, \'SILHS_CLUBB_PRECIP_FRAC\',//" -e "/^\'SILHS_CLUBB_ICE_SS_FRAC\'/d" run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Found: BIT_CHANGING Found: BIT_CHANGING Found: BIT_CHANGING Checking Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' Checking out 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 268eaf7dcf5cff29fc0de16749b8ebe447c1c521' WARNING: commit '6fda8e14438857fdf16e8afb5b32a52302cfd2e9' was supposed to be BIT_CHANGING, but is not. =============================== Test Results =============================== Commit Range Checked = 268eaf7dcf5cff29fc0de16749b8ebe447c1c521...6fda8e14438857fdf16e8afb5b32a52302cfd2e9 -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. Fake BIT_CHANGING Commits: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 =============================== Cleanup =============================== Removing all generated output REMOVING: 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 REMOVING: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (LTso + SILHS BFB Check) [Pipeline] catchError [Pipeline] { [Pipeline] deleteDir [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit 4292a70f53a6b6c4eab864fe27b8fd9af5d86909 Author: Daniel Ebel Date: Mon Oct 12 17:10:53 2026 -0500 Fix arm97+l do expldiff rtm thlm+set edsclrm f early (#1386) * Do not force the thlm/rtm copies in the expldiff eddy-scalar solve" [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_LTso_SILHS_test_config > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 # timeout=10 Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. ccs_config up to date. fms up to date. Recursively checking out submodules of fms share up to date. cdeps up to date. Recursively checking out submodules of cdeps tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD cmeps up to date. tuv-x up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute parallelio up to date. cice up to date. Recursively checking out submodules of cice geoschem up to date. Recursively checking out submodules of geoschem Recursively checking out submodules of HEMCO clm up to date. Recursively checking out submodules of clm Recursively checking out submodules of src cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-13 04:21:11 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:21:12 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:21:12 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:21:12 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:21:12 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:21:12 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:21:12 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:21:12 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:21:12 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261013-042111 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261013-042111 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261013-042111 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261013-042111 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261013-042111 Component lnd build complete with 2472 warnings clm built in 72.532328 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261013-042111 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261013-042111 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261013-042111 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261013-042111 docn built in 1.495495 seconds Component rof build complete with 145 warnings mosart built in 11.659634 seconds Component ice build complete with 502 warnings cice built in 105.831969 seconds Component atm build complete with 6142 warnings cam built in 173.393603 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261013-042111 Component cesm exe build complete with 54 warnings Total build time: 343.516876 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-13 04:26:58 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:26:59 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:26:59 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:26:59 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:26:59 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:26:59 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:26:59 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:26:59 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:26:59 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-13 04:27:01 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:27:02 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:27:02 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:27:02 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:27:02 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:27:02 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:27:02 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:27:02 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:27:02 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3198-g268eaf7dc Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-13 04:40:40 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:40:40 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:40:40 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:40:41 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:40:41 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:40:41 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:40:41 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:40:41 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:40:41 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261013-044039 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261013-044039 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261013-044039 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261013-044039 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261013-044039 clm built in 1.057041 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261013-044039 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261013-044039 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261013-044039 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261013-044039 mosart built in 0.743339 seconds cice built in 0.758062 seconds docn built in 1.169865 seconds Component atm build complete with 158 warnings cam built in 18.441311 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261013-044039 Component cesm exe build complete with 11 warnings Total build time: 33.639729 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-13 04:41:17 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:41:17 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:41:17 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:41:18 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:41:18 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:41:18 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:41:18 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:41:18 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:41:18 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-13 04:41:20 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-13 04:41:20 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-13 04:41:20 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-13 04:41:21 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-13 04:41:21 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-13 04:41:21 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-13 04:41:21 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-13 04:41:21 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-13 04:41:21 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online mitch is back online check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! -------- Variable Diff Summary -------- File 1: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 File 2: 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 Variables discovered (union): 1724 Excluded from comparison: FDL (uninitialized upper-level longwave diagnostic values in MTso) Excluded from comparison: time_written (wall-clock file-write time) Variables present in both files: 1722 Variables only in file 1: 0 Variables only in file 2: 0 Variables with differences (all dimensions): 0 Variables identical (all dimensions): 1722 Variables all-zero in file 1 (actual data): 131 Variables all-zero in file 2 (actual data): 131 Variables all-zero in both files (actual data): 131 Variables with >=2 dimensions tested (PASS/FAIL basis): 627 Variables with >=2 dimensions with differences: 0 Variables with >=2 dimensions identical: 627 Variables with >=2 dimensions all-zero in both files (actual data): 96 Variables skipped for PASS/FAIL (fewer than 2 dimensions in both files): 1095 PASS: No differences found in variables with >=2 dimensions. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&\nsed -i -e \'s/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_LTso"/\' run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Found: BIT_CHANGING Found: BIT_CHANGING Found: BIT_CHANGING Checking Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' Checking out 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 268eaf7dcf5cff29fc0de16749b8ebe447c1c521' WARNING: commit '6fda8e14438857fdf16e8afb5b32a52302cfd2e9' was supposed to be BIT_CHANGING, but is not. =============================== Test Results =============================== Commit Range Checked = 268eaf7dcf5cff29fc0de16749b8ebe447c1c521...6fda8e14438857fdf16e8afb5b32a52302cfd2e9 -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. Fake BIT_CHANGING Commits: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 =============================== Cleanup =============================== Removing all generated output REMOVING: 268eaf7dcf5cff29fc0de16749b8ebe447c1c521 REMOVING: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS