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* Fixing code to comply with clubb standards and making standards check output a little nicer

* Fixing unused variable compiler errors

* Removing ifdef GFDL option

* A bit of cleanup

* Little GPU fix

* Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it

* Adding missed cmake files

* Improving various subroutine edits
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* Fixing code to comply with clubb standards and making standards check output a little nicer

* Fixing unused variable compiler errors

* Removing ifdef GFDL option

* A bit of cleanup

* Little GPU fix

* Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it

* Adding missed cmake files

* Improving various subroutine edits
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