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Started by user Keegan Rhodes
Checking out git https://github.com/larson-group/sam_clubb.git into /home/jenkins/workspace/branch_sam_test@script to read jenkins_tests/sam_clubb_build/Jenkinsfile
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/sam_clubb.git
 > git init /home/jenkins/workspace/branch_sam_test@script # timeout=10
Fetching upstream changes from https://github.com/larson-group/sam_clubb.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/changes_to_not_break^{commit} # timeout=10
Checking out Revision 1344f8a40d6116af1b567307eb389b4be1009fc4 (refs/remotes/origin/changes_to_not_break)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 1344f8a40d6116af1b567307eb389b4be1009fc4 # timeout=10
Commit message: "Adding in preprocessor directives so that way sam compiles without clubb. Jenkins tests pass. Additionally, I renamed setdata and stepout so that way we can use them as modules because they previously only contained subroutines."
First time build. Skipping changelog.
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/branch_sam_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/sam_clubb.git
 > git init /home/jenkins/workspace/branch_sam_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/sam_clubb.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/changes_to_not_break^{commit} # timeout=10
Checking out Revision 1344f8a40d6116af1b567307eb389b4be1009fc4 (refs/remotes/origin/changes_to_not_break)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 1344f8a40d6116af1b567307eb389b4be1009fc4 # timeout=10
Commit message: "Adding in preprocessor directives so that way sam compiles without clubb. Jenkins tests pass. Additionally, I renamed setdata and stepout so that way we can use them as modules because they previously only contained subroutines."
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Edit Makefile)
[Pipeline] sh
+ sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Edit Default Case)
[Pipeline] sh
+ sed -i 's/nstop.*/nstop   = 6,/g' DYCOMS_RF02/prm
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile)
[Pipeline] sh
+ ./Build
if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_2D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D
mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D
if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_3D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D
mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D
if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS
mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS
if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_STAT ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT
mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT
if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOVIES ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES
mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES
if ! ( -d /home/jenkins/workspace/branch_sam_test/RESTART ) mkdir /home/jenkins/workspace/branch_sam_test/RESTART
mkdir /home/jenkins/workspace/branch_sam_test/RESTART
if ! ( -d /home/jenkins/workspace/branch_sam_test/OBJ ) mkdir /home/jenkins/workspace/branch_sam_test/OBJ
mkdir /home/jenkins/workspace/branch_sam_test/OBJ
if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_2D OUT_2D
if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_3D OUT_3D
if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS OUT_MOMENTS
if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_STAT OUT_STAT
if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOVIES OUT_MOVIES
if ! ( -d RESTART ) ln -s /home/jenkins/workspace/branch_sam_test/RESTART RESTART
if ! ( -d OBJ ) ln -s /home/jenkins/workspace/branch_sam_test/OBJ OBJ
cat
if ( -e /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS ) then
mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS
cd /home/jenkins/workspace/branch_sam_test/OBJ
if ( ! ( -e Filepath ) ) then
cat
endif
gmake -j4 -f /home/jenkins/workspace/branch_sam_test/Makefile
cat: Srcfiles: No such file or directory
/home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkSrcfiles > Srcfiles
/home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/model_flags.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/error_code.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/clubb_precision.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/MISR_simulator.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/parameter_indices.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/domain.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advection.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/shr_kind_mod.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/array_index.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/stat_file_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/lapack_interfaces.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/endian.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/input_names.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/mt95.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs_params.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/latin_hypercube_arrays.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/parameters_silhs.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/atmosphere.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/shr_orb_mod.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/code_timer_module.F90;
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/cstuff.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dasum.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/daxpy.f
/home/jenkins/workspace/branch_sam_test/SRC/cstuff.c: In function ‘systemf_’:
/home/jenkins/workspace/branch_sam_test/SRC/cstuff.c:37:36: warning: implicit declaration of function ‘system’; did you mean ‘systemf’? [-Wimplicit-function-declaration]
 void systemf (const char *string) {system(string);}
                                    ^~~~~~
                                    systemf
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dcopy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/ddot.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dgbcon.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dgbequ.f
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dtrmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/dtrsm.f
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/f_wrappers.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/fft.f90;
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/get_cpustamp.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/get_thread_num.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/icarus.F
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/idamax.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/ieeeck.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/iladlc.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/iladlr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/ilaenv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ilaslc.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ilaslr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/modis_simulator.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_double/iparmq.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/isamax.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_shared/lsame.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/quicksort.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/random.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sasum.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/sat.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/saxpy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/scopy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sdot.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbcon.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbequ.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbrfs.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbsv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbsvx.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbtf2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbtrf.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgbtrs.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sgemm.f
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/slatbs.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/slatrd.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/snrm2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sorg2l.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sorg2r.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sorgql.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sorgqr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sorgtr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/spoequ.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/spotrf.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/spotrf2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/srscl.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sscal.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssteqr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssterf.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/sswap.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssyev.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssymv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssyr2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssyr2k.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssyrk.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssytd2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/ssytrd.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/stbsv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/strmm.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/strmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_single/strsm.f
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_error.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_initialize.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_pclstr.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_pr.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_reset.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_setoption.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stamp.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_start.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test/SRC/TIMING  /home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_rank_to_index.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/LAPACK/Lapack_shared/xerbla.f
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c: In function ‘t_stop’:
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c:148:2: warning: implicit declaration of function ‘printf’ [-Wimplicit-function-declaration]
  printf ("t_stop: negative delta => probable counter overflow. "
  ^~~~~~
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c:148:2: warning: incompatible implicit declaration of built-in function ‘printf’
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c:148:2: note: include ‘<stdio.h>’ or provide a declaration of ‘printf’
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c:10:1:
+#include <stdio.h>
 
/home/jenkins/workspace/branch_sam_test/SRC/TIMING/t_stop.c:148:2:
  printf ("t_stop: negative delta => probable counter overflow. "
  ^~~~~~
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/constants_clubb.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/grid_config.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/stats_type.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/math_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/cam_rad_parameterizations.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/interpolation.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/file_functions.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/Nc_Ncn_eqns.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/T_in_K_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/abcoefs.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/ppgrid.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/vars.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/calc_roots.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/new_hybrid_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/pdf_parameter_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/saturation.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/pdf_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/stats_variables.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/lapack_wrap.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/index_mapping.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/clip_semi_implicit.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/calendar.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/sigma_sqd_w_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90;
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:49:8:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:49:8:

    fu(i,j,k)=dy25*(v(i,jc,k)+v(ib,jc,k))*(u(i,j,k)+u(i,jc,k))
        1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:49:46:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                                
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:49:46:

    fu(i,j,k)=dy25*(v(i,jc,k)+v(ib,jc,k))*(u(i,j,k)+u(i,jc,k))
                                              1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:8:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:8:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
        1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:33:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                   
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:33:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:44:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                              
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:50:44:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
                                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:51:8:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:51:8:

    fw(i,j,k)=dy25*(v(i,jc,k)*rho(k)*adz(k)+ &
        1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:52:49:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                                   
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_xy.f90:52:49:

              v(i,jc,kcu)*rho(kcu)*adz(kcu))*(w(i,j,kc)+w(i,jc,kc))
                                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/hydromet_pdf_parameter_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/matrix_operations.F90;
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:42:35:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:39:10:

  do j=1,ny
          2                         
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:42:35:

    fvz(i,j,k) = rhoi*(w(i,j,k)+w(i,j-1,k))*(v(i,j,k)+v(i,j,kb))
                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:42:35:

/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:39:10:

  do j=1,ny
          2                         
/home/jenkins/workspace/branch_sam_test/SRC/advect2_mom_z.f90:42:35:

    fvz(i,j,k) = rhoi*(w(i,j,k)+w(i,j-1,k))*(v(i,j,k)+v(i,j,kb))
                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/input_reader.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/diagnose_correlations_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/compute_correlation_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/tracers.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/rad.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/est_kessler_microphys_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/generate_uniform_sample_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/transform_to_pdf_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/aer_optics.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/albedo.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/bound_duvdt.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/bound_exchange.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/boundaries.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/cldefrint.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/compress3D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/coriolis.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom_xy.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom_z.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/fluxes_scalar_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/header.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/init.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/pkg_cldoptics.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/pressure.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/volcrad.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/raddedmx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radini.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radinp.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radoz2.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/shear_prod2D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/shear_prod3D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_2Dinit.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_sw.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_u2.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_v2.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_w2w3.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wu.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_mom.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_mom_third.f90;
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:48:67:

/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:48:67:

                 v_curr_t(i,j,k) = 0.5 * ( v_curr(i,j,k) + v_curr(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:48:67:

/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:48:67:

                 v_curr_t(i,j,k) = 0.5 * ( v_curr(i,j,k) + v_curr(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:49:67:

/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:49:67:

                 v_prev_t(i,j,k) = 0.5 * ( v_prev(i,j,k) + v_prev(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:49:67:

/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test/SRC/stat_covar_wv.F90:49:67:

                 v_prev_t(i,j,k) = 0.5 * ( v_prev(i,j,k) + v_prev(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_mom_u.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_mom_v.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_sw2.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_tke.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_varscalar.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_assign_bnd.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_bound_duvdt.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_exchange.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_init.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_ranks.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_util_MPI.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/trcab.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/trcabn.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/trcems.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/trcplk.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/trcpth.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/utils.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/zenith.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/grid_class.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/abortutils.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/adams.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/output_grads.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/corr_varnce_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/silhs_importance_sample_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/gffgch.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radae.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radcswmx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/wrap_nf.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/LY93_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/parameters_tunable.F90;
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/stats_clubb_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/latin_hypercube_driver_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/rad_restart.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/radclwmx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/pdf_closure_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/mixing_length.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/advance_xm_wpxp_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/advance_xp2_xpyp_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/advance_wp2_wp3_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/setup_clubb_pdf_params.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SILHS/silhs_api_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/advance_clubb_core_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/clubb_api_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/params.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_silhs_vars.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubbvars.F90;
/home/jenkins/workspace/branch_sam_test/SRC/params.F90:102:0:

 #endif UWM_MISC
 
Warning: extra tokens at end of #endif directive
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/MICRO_M2005_UWM/module_mp_graupel.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/calc_vars_util.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/hbuffer.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/compute_chi_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/advect_mom.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar2D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90;
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:80:13:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:78:22:

      do j=ny+1,dimy2_v
                      2
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:80:13:

          v(i,j,k) = 0.
             1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:101:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:101:23:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:101:33:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:101:33:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:32:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:42:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:102:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:103:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:103:23:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:103:33:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:103:33:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:32:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:42:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:104:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:26:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2            
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:26:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:38:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:38:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                      1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:54:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                                        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:54:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                                      1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:64:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:114:64:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                                                1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:26:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2            
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:26:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                      
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (-2 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                      
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:54:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                                        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:54:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                                      1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:64:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:122:64:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                                                1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:26:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2            
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:26:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                      
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:36:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:53:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:53:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                                     1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:63:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                                                 
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:131:63:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                                               1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:10:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:10:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &
          1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:19:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2     
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:19:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &
                   1
Warning: Array reference at (1) out of bounds (-1 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:56:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2                                          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:148:56:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &
                                                        1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:27:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:27:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &
                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:36:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &
                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:45:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:164:45:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &
                                             1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:23:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:34:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                     
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:34:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &
                                  1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:64:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:166:64:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &
                                                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:31:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:31:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &
                               1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:41:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                            
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:41:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &
                                         1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:52:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:62:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                 
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:167:62:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &
                                                              1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:23:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:34:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                     
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:34:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                  1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:44:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                               
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:44:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:54:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                         
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:54:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                                      1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:63:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:168:63:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                                               1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:182:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:182:36:

     vvv(i,j,k)=andiff(f(i,jb,k),f(i,j,k),v(i,j,k),irho(k)) &
                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:182:45:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:182:45:

     vvv(i,j,k)=andiff(f(i,jb,k),f(i,j,k),v(i,j,k),irho(k)) &
                                             1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:183:39:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:183:39:

               -(across(f(ic,jb,k)+f(ic,j,k)-f(ib,jb,k)-f(ib,j,k), &
                                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:183:60:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                               
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:183:60:

               -(across(f(ic,jb,k)+f(ic,j,k)-f(ib,jb,k)-f(ib,j,k), &
                                                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:23:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:43:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:43:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &
                                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:53:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:184:53:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &
                                                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:185:42:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:185:42:

                +across(dd*(f(i,jb,kc)+f(i,j,kc)-f(i,jb,kb)-f(i,j,kb)), &
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:185:63:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:185:63:

                +across(dd*(f(i,jb,kc)+f(i,j,kc)-f(i,jb,kb)-f(i,j,kb)), &
                                                               1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:23:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:43:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:43:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:186:52:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:26:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:26:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &
                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:36:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:36:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &
                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:45:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:200:45:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &
                                             1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:27:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:27:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &
                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:38:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                         
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:38:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &
                                      1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:48:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:48:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &
                                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:59:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:201:59:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &
                                                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:21:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:21:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:31:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:31:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &
                               1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:41:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                            
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:41:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &
                                         1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:51:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                      
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:51:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &
                                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:61:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                                
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:202:61:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &
                                                             1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:21:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:21:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:31:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:31:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                               1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:62:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                                 
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:204:62:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                                                              1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:224:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:224:23:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:224:33:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:224:33:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:32:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:42:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:225:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:226:23:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:226:23:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                       1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:226:33:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:226:33:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &
                                 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:32:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:42:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:52:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:227:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:238:37:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:234:13:

   do j=0,nyp1
             2                        
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:238:37:

      mx(i,j,k)=rho(k)*(mx(i,j,k)-f(i,j,k))/ &
                                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:242:27:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:234:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:242:27:

      mn(i,j,k)=rho(k)*(f(i,j,k)-mn(i,j,k))/ &
                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:287:10:

  do j=1,ny
          2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

    f(i,j,k)=max(0.,f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &
                                                            1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:287:10:

  do j=1,ny
          2                                                  
/home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

    f(i,j,k)=max(0.,f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &
                                                            1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/buoyancy.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/simple_ocean.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/hbuf_conditionals_init.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/landflx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_moments.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/movies.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/readiopdata_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/oceflx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/precip_fall.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/press_grad.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/press_rhs.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/pressure_big.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/pressure_orig.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/pressz.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/printout.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/rad_simple.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/rad_simple_smoke.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/rad_simple_uwm.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/setforcing.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/setgrid.f90;
/home/jenkins/workspace/branch_sam_test/SRC/setgrid.f90:78:12:

/home/jenkins/workspace/branch_sam_test/SRC/setgrid.f90:75:10:

  do j=0,ny
          2  
/home/jenkins/workspace/branch_sam_test/SRC/setgrid.f90:78:12:

      fcorzy(j) = 0.
            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stat_sw1.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/traceini.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/uvw.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/write_fields2D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/MICRO_M2005_UWM/microphysics.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/stat_clubb.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/damping.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/forcing.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/hbuf_micro_init.f90;
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1457:32:

         do indx = 1, edsclr_dim, 1
                                1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1466:30:

         do indx = 1, sclr_dim, 1
                              1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1878:34:

           do indx = 1, edsclr_dim
                                  1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1884:31:

           do indx = 1, sclr_dim
                               1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:882:28:

       do indx = 1, sclr_dim, 1
                            1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:2196:8:

     use grid_config, only: &
        1
Warning: Unused module variable ‘na’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:2202:8:

     use vars, only: rho
        1
Warning: Unused module variable ‘rho’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:2151:8:

     use grid_config, only: &
        1
Warning: Unused module variable ‘rank’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1333:8:

       em, &
        1
Warning: Unused variable ‘em’ declared at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1104:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘iing’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1104:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘l_stats’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90:1334:12:

       Lscale, &
            1
Warning: Unused variable ‘lscale’ declared at (1) [-Wunused-variable]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/ice_fall.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/instrument_diagnostics.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/micro_field_utils.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/nudging.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/rad_full.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/radiation.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90;
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:98:37:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2                  
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:98:37:

         dtr = - rdz * (tracer(i,j,k1,n)-tracer(i,j,k2,n))
                                     1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:98:54:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2                                   
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:98:54:

         dtr = - rdz * (tracer(i,j,k1,n)-tracer(i,j,k2,n))
                                                      1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:99:21:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2  
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:99:21:

         tracer(i,j,k,n) = tracer(i,j,k,n) + dtn*dtr
                     1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:99:39:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2                    
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:99:39:

         tracer(i,j,k,n) = tracer(i,j,k,n) + dtn*dtr
                                       1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:100:16:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:100:16:

         tradv(k,n) = tradv(k,n) + dtr
                1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:100:29:

/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:95:19:

   do n = 1,ntracers
                   2          
/home/jenkins/workspace/branch_sam_test/SRC/subsidence.F90:100:29:

         tradv(k,n) = tradv(k,n) + dtr
                             1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/surface.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/upperbound.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/write_fields3D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/zero.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/statistics.F90;
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:587:23:

       do k = 1,ntracers
                       1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:786:8:

     use grid_config, only: nstep,dt,icycle
        1
Warning: Unused module variable ‘dt’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:786:8:

     use grid_config, only: nstep,dt,icycle
        1
Warning: Unused module variable ‘icycle’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:806:8:

     use sgs_params, only: doclubb, doclubbnoninter, nclubb, doclubb_sfc_fluxes
        1
Warning: Unused module variable ‘doclubb_sfc_fluxes’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:787:8:

     use params, only: dosmoke
        1
Warning: Unused module variable ‘dosmoke’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:798:8:

     use clubbvars, only: edsclr_dim, sclr_dim, wprtp, wpthlp, rho_ds_zt, rho_ds_zm, &
        1
Warning: Unused module variable ‘rho_ds_zm’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:798:8:

     use clubbvars, only: edsclr_dim, sclr_dim, wprtp, wpthlp, rho_ds_zt, rho_ds_zm, &
        1
Warning: Unused module variable ‘rtm_spurious_source’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:800:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘stats_tout’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:800:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘stats_tsamp’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:798:8:

     use clubbvars, only: edsclr_dim, sclr_dim, wprtp, wpthlp, rho_ds_zt, rho_ds_zm, &
        1
Warning: Unused module variable ‘thlm_spurious_source’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:798:8:

     use clubbvars, only: edsclr_dim, sclr_dim, wprtp, wpthlp, rho_ds_zt, rho_ds_zm, &
        1
Warning: Unused module variable ‘wprtp’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:798:8:

     use clubbvars, only: edsclr_dim, sclr_dim, wprtp, wpthlp, rho_ds_zt, rho_ds_zm, &
        1
Warning: Unused module variable ‘wpthlp’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:424:8:

     use sgs_params, only: doclubb, doclubbnoninter, nclubb, doclubb_sfc_fluxes
        1
Warning: Unused module variable ‘doclubbnoninter’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:424:8:

     use sgs_params, only: doclubb, doclubbnoninter, nclubb, doclubb_sfc_fluxes
        1
Warning: Unused module variable ‘nclubb’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:417:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘stats_tout’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:417:8:

     use clubb_api_module, only: &
        1
Warning: Unused module variable ‘stats_tsamp’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/sgs.F90:350:8:

     use grid_config, only: dt, dx, dy, dz, adz, adzw
        1
Warning: Unused module variable ‘adz’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1965:45:

           do ntr=1,ntracers
                           2                  
            call hbuf_avg_put(trim(tracername(ntr)),tracer(:,:,:,ntr), &
                                             1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1967:41:

/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1964:27:

           do ntr=1,ntracers
                           2              
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1967:41:

            call hbuf_put(trim(tracername(ntr))//'FLX',trwle(:,ntr),factor_xy)
                                         1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1968:41:

/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1964:27:

           do ntr=1,ntracers
                           2              
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1968:41:

            call hbuf_put(trim(tracername(ntr))//'FLXS',trwsb(:,ntr),factor_xy)
                                         1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1969:41:

/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1964:27:

           do ntr=1,ntracers
                           2              
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1969:41:

            call hbuf_put(trim(tracername(ntr))//'ADV',tradv(:,ntr),factor_xy*86400./dtn)
                                         1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1970:41:

/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1964:27:

           do ntr=1,ntracers
                           2              
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1970:41:

            call hbuf_put(trim(tracername(ntr))//'DFSN',trdiff(:,ntr),factor_xy*86400./dtn)
                                         1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1971:41:

/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1964:27:

           do ntr=1,ntracers
                           2              
/home/jenkins/workspace/branch_sam_test/SRC/statistics.F90:1971:41:

            call hbuf_put(trim(tracername(ntr))//'PHYS',trphys(:,ntr),factor_xy*86400./dtn)
                                         1
Warning: Array reference at (1) out of bounds (1 > 0) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/advect_all_scalars.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/diagnose.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom2D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom2D_xy.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom2D_z.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90;
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:66:19:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2        
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:66:19:

     tky=rdy21*tk(i,j,k)
                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:67:37:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2                          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:67:37:

     fv(i,j,k)=-2.*tky*(v(i,jc,k)-v(i,j,k))
                                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:68:21:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:68:21:

     tky=rdy251*(tk(i,j,k)+tk(ib,j,k)+tk(i,jc,k)+tk(ib,jc,k))
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:68:32:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2                     
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:68:32:

     tky=rdy251*(tk(i,j,k)+tk(ib,j,k)+tk(i,jc,k)+tk(ib,jc,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:69:34:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2                       
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:69:34:

     fu(i,j,k)=-tky*(u(i,jc,k)-u(i,j,k)+(v(i,jc,k)-v(ib,jc,k))*dyx)
                                  1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:70:21:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:70:21:

     tky=rdy251*(tk(i,j,k)+tk(i,jc,k)+tk(i,j,kcu)+tk(i,jc,kcu))
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:70:42:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2                               
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:70:42:

     tky=rdy251*(tk(i,j,k)+tk(i,jc,k)+tk(i,j,kcu)+tk(i,jc,kcu))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:71:35:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:62:11:

   do j=0,ny
           2                        
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D.F90:71:35:

     fw(i,j,k)=-tky*(w(i,jc,kc)-w(i,j,kc)+(v(i,jc,kcu)-v(i,jc,k))*dyz)
                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_z.F90;
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:66:19:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2        
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:66:19:

     tky=rdy21*tk(i,j,k)
                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:67:37:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2                          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:67:37:

     fv(i,j,k)=-2.*tky*(v(i,jc,k)-v(i,j,k))
                                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:68:21:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:68:21:

     tky=rdy251*(tk(i,j,k)+tk(ib,j,k)+tk(i,jc,k)+tk(ib,jc,k))
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:68:32:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2                     
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:68:32:

     tky=rdy251*(tk(i,j,k)+tk(ib,j,k)+tk(i,jc,k)+tk(ib,jc,k))
                                1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:69:34:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2                       
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:69:34:

     fu(i,j,k)=-tky*(u(i,jc,k)-u(i,j,k)+(v(i,jc,k)-v(ib,jc,k))*dyx)
                                  1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:70:21:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2          
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:70:21:

     tky=rdy251*(tk(i,j,k)+tk(i,jc,k)+tk(i,j,kcu)+tk(i,jc,kcu))
                     1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:70:42:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2                               
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:70:42:

     tky=rdy251*(tk(i,j,k)+tk(i,jc,k)+tk(i,j,kcu)+tk(i,jc,kcu))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:71:35:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:62:11:

   do j=0,ny
           2                        
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_mom3D_xy.F90:71:35:

     fw(i,j,k)=-tky*(w(i,jc,kc)-w(i,j,kc)+(v(i,jc,kcu)-v(i,jc,k))*dyz)
                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar2D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar2D_xy.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar2D_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90;
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:125:19:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:122:10:

  do j=0,ny
          2         
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:125:19:

    tky=rdy5*(tkh(i,j,k)+tkh(i,jc,k))
                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:126:42:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:122:10:

  do j=0,ny
          2                                
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D.f90:126:42:

    flx(i,j,k)=-tky*(field(i,jc,k)-field(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:125:19:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:122:10:

  do j=0,ny
          2         
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:125:19:

    tky=rdy5*(tkh(i,j,k)+tkh(i,jc,k))
                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:126:42:

/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:122:10:

  do j=0,ny
          2                                
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_xy.f90:126:42:

    flx(i,j,k)=-tky*(field(i,jc,k)-field(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar3D_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar_xy.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/diffuse_scalar_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/hbuf_sgs_init.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/kurant.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/stepout_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/setdata_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/periodic.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/restart.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/setparm.F90;
/home/jenkins/workspace/branch_sam_test/SRC/setparm.F90:88:0:

 #endif UWM_MISC
 
Warning: extra tokens at end of #endif directive
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/setperturb.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_boundaries.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/task_dispatch.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/tke_full.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test/SRC/main.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART -o /home/jenkins/workspace/branch_sam_test/SAM_ADV_MPDATA_SGS_CLUBB_RAD_CAM_MICRO_M2005_UWM LY93_pdf.o MISR_simulator.o Nc_Ncn_eqns.o Skx_module.o T_in_K_module.o abcoefs.o abortutils.o adams.o adg1_adg2_3d_luhar_pdf.o advance_clubb_core_module.o advance_helper_module.o advance_windm_edsclrm_module.o advance_wp2_wp3_module.o advance_xm_wpxp_module.o advance_xp2_xpyp_module.o advance_xp3_module.o advect2_mom_xy.o advect2_mom_z.o advect_all_scalars.o advect_mom.o advect_scalar.o advect_scalar2D.o advect_scalar3D.o advection.o aer_optics.o albedo.o array_index.o atmosphere.o bound_duvdt.o bound_exchange.o boundaries.o buoyancy.o calc_pressure.o calc_roots.o calc_vars_util.o calendar.o cam_rad_parameterizations.o cldefrint.o clip_explicit.o clip_semi_implicit.o clubb_api_module.o clubb_precision.o clubb_sgs.o clubb_silhs_vars.o clubbvars.o code_timer_module.o compress3D.o compute_chi_module.o compute_correlation_module.o constants_clubb.o coriolis.o corr_varnce_module.o cstuff.o damping.o dasum.o daxpy.o dcopy.o ddot.o dgbcon.o dgbequ.o dgbmv.o dgbrfs.o dgbsv.o dgbsvx.o dgbtf2.o dgbtrf.o dgbtrs.o dgemm.o dgemv.o dger.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o diagnose.o diagnose_correlations_module.o diffuse_mom.o diffuse_mom2D.o diffuse_mom2D_xy.o diffuse_mom2D_z.o diffuse_mom3D.o diffuse_mom3D_xy.o diffuse_mom3D_z.o diffuse_mom_xy.o diffuse_mom_z.o diffuse_scalar.o diffuse_scalar2D.o diffuse_scalar2D_xy.o diffuse_scalar2D_z.o diffuse_scalar3D.o diffuse_scalar3D_xy.o diffuse_scalar3D_z.o diffuse_scalar_xy.o diffuse_scalar_z.o diffusion.o disnan.o dlabad.o dlacn2.o dlacpy.o dlae2.o dlaev2.o dlagtm.o dlaisnan.o dlamch.o dlangb.o dlangt.o dlanst.o dlansy.o dlantb.o dlapy2.o dlaqgb.o dlaqsy.o dlarf.o dlarfb.o dlarfg.o dlarft.o dlartg.o dlascl.o dlaset.o dlasr.o dlasrt.o dlassq.o dlaswp.o dlatbs.o dlatrd.o dnrm2.o domain.o dorg2l.o dorg2r.o dorgql.o dorgqr.o dorgtr.o dpoequ.o dpotrf.o dpotrf2.o drscl.o dscal.o dsteqr.o dsterf.o dswap.o dsyev.o dsymv.o dsyr2.o dsyr2k.o dsyrk.o dsytd2.o dsytrd.o dtbsv.o dtrmm.o dtrmv.o dtrsm.o endian.o error_code.o est_kessler_microphys_module.o f_wrappers.o fft.o file_functions.o fill_holes.o fluxes_scalar_z.o forcing.o generate_uniform_sample_module.o get_cpustamp.o get_thread_num.o gffgch.o grid_class.o grid_config.o hbuf_conditionals_init.o hbuf_micro_init.o hbuf_sgs_init.o hbuffer.o header.o hydromet_pdf_parameter_module.o icarus.o ice_fall.o idamax.o ieeeck.o iladlc.o iladlr.o ilaenv.o ilaslc.o ilaslr.o index_mapping.o init.o input_names.o input_reader.o instrument_diagnostics.o interpolation.o iparmq.o isamax.o kurant.o landflx.o lapack_interfaces.o lapack_wrap.o latin_hypercube_arrays.o latin_hypercube_driver_module.o lh_microphys_var_covar_module.o lsame.o main.o math_utilities.o matrix_operations.o mean_adv.o micro_field_utils.o microphysics.o mixing_length.o model_flags.o modis_simulator.o module_mp_graupel.o mono_flux_limiter.o movies.o mt95.o new_hybrid_pdf.o new_hybrid_pdf_main.o new_pdf.o new_pdf_main.o new_tsdadg_pdf.o nudging.o numerical_check.o oceflx.o output_2D_samples_module.o output_grads.o output_netcdf.o parameter_indices.o parameters_model.o parameters_silhs.o parameters_tunable.o params.o pdf_closure_module.o pdf_parameter_module.o pdf_utilities.o periodic.o pkg_cldoptics.o pos_definite_module.o ppgrid.o precip_fall.o precipitation_fraction.o press_grad.o press_rhs.o pressure.o pressure_big.o pressure_orig.o pressz.o printout.o quicksort.o rad.o rad_full.o rad_restart.o rad_simple.o rad_simple_smoke.o rad_simple_uwm.o radae.o radclwmx.o radcswmx.o raddedmx.o radiation.o radini.o radinp.o radoz2.o random.o readiopdata_module.o restart.o sasum.o sat.o saturation.o saxpy.o scopy.o sdot.o setdata_module.o setforcing.o setgrid.o setparm.o setperturb.o setup_clubb_pdf_params.o sfc_varnce_module.o sgbcon.o sgbequ.o sgbmv.o sgbrfs.o sgbsv.o sgbsvx.o sgbtf2.o sgbtrf.o sgbtrs.o sgemm.o sgemv.o sger.o sgs.o sgs_params.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shear_prod2D.o shear_prod3D.o shr_kind_mod.o shr_orb_mod.o sigma_sqd_w_module.o silhs_api_module.o silhs_importance_sample_module.o simple_ocean.o sisnan.o slabad.o slacn2.o slacpy.o slae2.o slaev2.o slagtm.o slaisnan.o slamch.o slangb.o slangt.o slanst.o slansy.o slantb.o slapy2.o slaqgb.o slaqsy.o slarf.o slarfb.o slarfg.o slarft.o slartg.o slascl.o slaset.o slasr.o slasrt.o slassq.o slaswp.o slatbs.o slatrd.o snrm2.o sorg2l.o sorg2r.o sorgql.o sorgqr.o sorgtr.o spoequ.o sponge_layer_damping.o spotrf.o spotrf2.o srscl.o sscal.o ssteqr.o ssterf.o sswap.o ssyev.o ssymv.o ssyr2.o ssyr2k.o ssyrk.o ssytd2.o ssytrd.o stat_2Dinit.o stat_clubb.o stat_covar_sw.o stat_covar_u2.o stat_covar_v2.o stat_covar_w2w3.o stat_covar_wu.o stat_covar_wv.o stat_file_module.o stat_mom.o stat_mom_third.o stat_mom_u.o stat_mom_v.o stat_moments.o stat_sw1.o stat_sw2.o stat_tke.o stat_varscalar.o statistics.o stats_clubb_utilities.o stats_lh_sfc_module.o stats_lh_zt_module.o stats_rad_zm_module.o stats_rad_zt_module.o stats_sfc_module.o stats_type.o stats_type_utilities.o stats_variables.o stats_zm_module.o stats_zt_module.o stbsv.o stepout_module.o strmm.o strmv.o strsm.o subsidence.o surface.o t_error.o t_initialize.o t_pclstr.o t_pr.o t_reset.o t_setoption.o t_stamp.o t_start.o t_stop.o task_assign_bnd.o task_bound_duvdt.o task_boundaries.o task_dispatch.o task_exchange.o task_init.o task_rank_to_index.o task_ranks.o task_util_MPI.o tke_full.o traceini.o tracers.o transform_to_pdf_module.o trcab.o trcabn.o trcems.o trcplk.o trcpth.o turbulent_adv_pdf.o upperbound.o utils.o uvw.o vars.o volcrad.o wrap_nf.o write_fields2D.o write_fields3D.o xerbla.o zenith.o zero.o  -L/usr/local/mpi/MPICH-3.3.1-gfortran/lib -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff 
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CLUBBStandardsCheck.pl CAUTION: "clubb_sgs.F90" does not match "" in Id tag.
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90
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CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1669 :                um(i,j,:), vm(i,j,:), upwp(i,j,:), vpwp(i,j,:), up2(i,j,:), vp2(i,j,:), up3(i,j,:), vp3(i,j,:), & ! In/out
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/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_sgs.F90
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CLUBBStandardsCheck.pl CAUTION: "clubb_silhs_vars.F90" does not match "" in Id tag.
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubb_silhs_vars.F90
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CLUBBStandardsCheck.pl has begun.
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CLUBBStandardsCheck.pl CAUTION: "clubbvars.F90" does not match "" in Id tag.
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/clubbvars.F90
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CLUBBStandardsCheck.pl has begun.
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CLUBBStandardsCheck.pl CAUTION: "stat_clubb.F90" does not match "" in Id tag.
/home/jenkins/workspace/branch_sam_test/SRC/SGS_CLUBB/stat_clubb.F90
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CLUBBStandardsCheck.pl has finished.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run SAM)
[Pipeline] sh
+ ./runsam.bash 1
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 127
Finished: FAILURE