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#7878false7823555SUCCESS1685814494718http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/78/components/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_ne4_silhs.csh8cf4e6692fe24b33d4cbbf5d69c02a9b416fea691685814453000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduI made a mistake when setting the variable, changed in now. 2023-06-03 12:47:33 -05008cf4e6692fe24b33d4cbbf5d69c02a9b416fea69I made a mistake when setting the variable, changed in now.editnightly_test/nightly_e3sm_ne4_silhs.csheditcomponents/eam/src/physics/cam/clubb_intr.F90githttp://carson.math.uwm.edu/jenkins/user/cerniktcerniktfalse79http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/79/77http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/77/BRANCHorigin/cernikt_cam_issue_147TESTe3sm_ne4_silhs_run_gfortran_testStarted by user 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#7777false7723553FAILURE1685810835350http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/77/nightly_test/nightly_e3sm_ne4_silhs.cshb9aef415bb0ec9126707aa00d6b732b3d2dda07a1685810706000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduRemoved silhs related options from test code 2023-06-03 11:45:06 -0500b9aef415bb0ec9126707aa00d6b732b3d2dda07aRemoved silhs related options from test codeeditnightly_test/nightly_e3sm_ne4_silhs.cshgithttp://carson.math.uwm.edu/jenkins/user/cerniktcerniktfalse78http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/78/76http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/76/BRANCHorigin/clubb_silhs_develTESTe3sm_ne4_silhs_run_gfortran_testStarted by user 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#7676false7623343SUCCESS1684596686384http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/76/jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile65d171a91d80478bbe599ab2f58f14facd2ad7a71654713830000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduPutting other log file copy commands in try catch to prevent it from failing the step before cleaning the directory 2022-06-08 13:43:50 -050065d171a91d80478bbe599ab2f58f14facd2ad7a7Putting other log file copy commands in try catch to prevent it from failing the step before cleaning the directoryeditjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilediffusion.F90advance_xm_wpxp_module.F90clubb_api_module.F90clip_explicit.F90pos_definite_module.F90grid_class.F90parameters_tunable.F90sponge_layer_damping.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90turbulent_adv_pdf.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90fill_holes.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90stats_clubb_utilities.F90calc_pressure.F90fece46637566b9e53ed2e20894a4f53cc2f617da1654818473000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comThe big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB. 2022-06-09 18:47:53 -0500fece46637566b9e53ed2e20894a4f53cc2f617daThe big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB.editadg1_adg2_3d_luhar_pdf.F90editadvance_wp2_wp3_module.F90editadvance_windm_edsclrm_module.F90editsponge_layer_damping.F90editpdf_closure_module.F90editadvance_helper_module.F90editgrid_class.F90editstats_clubb_utilities.F90editadvance_xp2_xpyp_module.F90editturbulent_adv_pdf.F90editpos_definite_module.F90editsetup_clubb_pdf_params.F90editadvance_xm_wpxp_module.F90editadvance_xp3_module.F90editmono_flux_limiter.F90editfill_holes.F90editcalc_pressure.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editdiffusion.F90editclip_explicit.F90editparameters_tunable.F90editmixing_length.F90silhs_api_module.F90latin_hypercube_driver_module.F90dcb05d4849a9fd845627278f534f82c5d95b54241654818473000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comThe big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB. 2022-06-09 18:47:53 -0500dcb05d4849a9fd845627278f534f82c5d95b5424The big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB.editsilhs_api_module.F90editlatin_hypercube_driver_module.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F90d3c8b62d7f46a6a6211d20aba97f99144c8e15f41654818986000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. update_xp2_mc will be broken by this, but all we need to do to fix it is push the column loop into it. 2022-06-09 18:56:26 -0500d3c8b62d7f46a6a6211d20aba97f99144c8e15f4Making compatible with latest clubb change. update_xp2_mc will be broken by this, but all we need to do to fix it is push the column loop into it.editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F9096ea77f83759b2826af8066f7bba0b8622e002b21654894023000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small bug preventing compilation. 2022-06-10 15:47:03 -050096ea77f83759b2826af8066f7bba0b8622e002b2Fixing small bug preventing compilation.editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90clubb_api_module.F90b283dcad1f9b9a9c6574f5c7466bd8125a80a9171654901042000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving the zt2zm interface from clubb_api and making the api calls just redirect to the grid class interface for it. 2022-06-10 17:44:02 -0500b283dcad1f9b9a9c6574f5c7466bd8125a80a917Removing the zt2zm interface from clubb_api and making the api calls just redirect to the grid class interface for it.editclubb_api_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90mean_adv.F90mono_flux_limiter.F9064ef912040e0e808923bb5c9354e39c0d4ddbe871654901042000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing column loop into mean advection procedures. 2022-06-10 17:44:02 -050064ef912040e0e808923bb5c9354e39c0d4ddbe87Pushing column loop into mean advection procedures.editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editmean_adv.F90editmono_flux_limiter.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90advance_xm_wpxp_module.F9076b6a7abbb040eb49f24eb5129dd3967bc34470d1654904676000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comLittle loop push 2022-06-10 18:44:36 -050076b6a7abbb040eb49f24eb5129dd3967bc34470dLittle loop pusheditadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90grid_class.F90turbulent_adv_pdf.F90mean_adv.F90mono_flux_limiter.F90dd7ed27deff26acabf5edfe1932224e64ae68f5e1654904676000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving above/below index of grid weights to last dimension. 2022-06-10 18:44:36 -0500dd7ed27deff26acabf5edfe1932224e64ae68f5eMoving above/below index of grid weights to last dimension.editgrid_class.F90editmean_adv.F90editmono_flux_limiter.F90editturbulent_adv_pdf.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90fill_holes.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F9061e346b94dc205f46ddb43e037f2758a535a20b31655335624000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing loop into fill_holes. 2022-06-15 18:27:04 -050061e346b94dc205f46ddb43e037f2758a535a20b3Pushing loop into fill_holes.editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editclubb_api_module.F90editfill_holes.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F9077f12fcb41f06c9a95378a54bbae8889d032deb21655335624000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comForgot small change. 2022-06-15 18:27:04 -050077f12fcb41f06c9a95378a54bbae8889d032deb2Forgot small change.editadvance_xm_wpxp_module.F90grid_class.F90add842c9f5797774559dce57ce5f51a5065233441655492801000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking linear_interpolated_azt_2D and linear_interpolated_azm_2D subroutines just to avoid a needless data copy. 2022-06-17 14:06:41 -0500add842c9f5797774559dce57ce5f51a506523344Making linear_interpolated_azt_2D and linear_interpolated_azm_2D subroutines just to avoid a needless data copy.editgrid_class.F90advance_xp2_xpyp_module.F90clubb_api_module.F90dc9e57ed7bdf35c97640ff0ddc87e39a6a51897b1655492801000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking update_xp2_mc 2D and creating interface for 1D calls. 2022-06-17 14:06:41 -0500dc9e57ed7bdf35c97640ff0ddc87e39a6a51897bMaking update_xp2_mc 2D and creating interface for 1D calls.editadvance_xp2_xpyp_module.F90editclubb_api_module.F90components/eam/src/physics/cam/clubb_intr.F901d80834b46adaac8de5937323d44e5353ffd033f1655492836000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking use of new 2D call to update_xp2_mc 2022-06-17 14:07:16 -05001d80834b46adaac8de5937323d44e5353ffd033fMaking use of new 2D call to update_xp2_mceditcomponents/eam/src/physics/cam/clubb_intr.F90stats_zt_module.F90ed460b8da54ec8c8672698204b962b1f2c0bba761655835945000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing units in stats_zt_module.F90 This change will be BIT_CHANGING because it will affect the descriptions of variables in the netcdf files, but will not change answers. 2022-06-21 12:25:45 -0600ed460b8da54ec8c8672698204b962b1f2c0bba76Fixing units in stats_zt_module.F90editstats_zt_module.F90stats_zm_module.F90stats_variables.F90mono_flux_limiter.F908d3e4542fb9b0c14babe8621eca51648539827a81658265385000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing a bug in mono_flux_limiter.F90. (#1026) * Fixing a bug in mono_flux_limiter.F90. This code was outputting "xm" instead of "wpxp" in several places. This commit is BIT_CHANGING since it will affect the netcdf output for these variables, even though there is no real change to answers. * Renaming wpthlp_entermfl to wpthlp_enter_mfl which is more consistent with other variable names. This is BIT_CHANGING due to changing the name and description in the output netcdf files. * Renaming a few more instances of wpthlp_entermfl to wpthlp_enter_mfl. 2022-07-19 15:16:25 -06008d3e4542fb9b0c14babe8621eca51648539827a8Fixing a bug in mono_flux_limiter.F90. (#1026)editstats_zm_module.F90editstats_variables.F90editmono_flux_limiter.F90pdf_closure_module.F90fde756aa71b25daf7c103c445b2d6fc018df057b1658271937000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing a bug. 2022-07-19 18:05:37 -0500fde756aa71b25daf7c103c445b2d6fc018df057bFixing a bug.editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90clubb_api_module.F909434be0736f63802f57dc200dad4c6eae62f68be1660590191000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the w_up_in_cloud code in 2 ways: 1) The denominator term is now the "cloudy updraft" frac in each PDF component, rather than just the PDF component cloud_frac. This is more consistent with the quantity being integrated. 2) I also added a w_down_in_cloud for cloudy downdraft velocity. Since these fields are not output as part of standard stats, this commit will be bit-for-bit for the normal CLUBB output files. 2022-08-15 14:03:11 -05009434be0736f63802f57dc200dad4c6eae62f68beI changed the w_up_in_cloud code in 2 ways:editadvance_clubb_core_module.F90editpdf_closure_module.F90editclubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F90stats_variables.F90stats_zt_module.F90d0bd6bf033fe043e0218e55cf4059316e0d308e41660594604000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added stats output for w_down_in_cloud to all_stats.in. Since this stat was not added to standard_stats.in, official results will still be bit-for-bit. 2022-08-15 15:16:44 -0500d0bd6bf033fe043e0218e55cf4059316e0d308e4I added stats output for w_down_in_cloud to all_stats.in.editpdf_closure_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editstats_zt_module.F90editstats_variables.F90components/eam/src/physics/cam/clubb_intr.F904c4ee5a20f2aa6b971a1280e2303f6afe94fa02b1660599130000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduModifications for the latest CLUBB code changes. 2022-08-15 16:32:10 -05004c4ee5a20f2aa6b971a1280e2303f6afe94fa02bModifications for the latest CLUBB code changes.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F908d7f385fbf475f4ca9f958ea87394d34c6525dbb1660599941000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding w_down_in_cl to the E3SM stats output, as well. 2022-08-15 16:45:41 -05008d7f385fbf475f4ca9f958ea87394d34c6525dbbAdding w_down_in_cl to the E3SM stats output, as well.editcomponents/eam/src/physics/cam/clubb_intr.F90pdf_closure_module.F90a7de6b09f4f0e09b48f663e2432b3e98b29bfe601660699106000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the w_up_in_cloud and w_down_in_cloud code so that a thresholding is used similar to what is seen in the cloud fraction and cloud water code. If the PDF component mean of w more than the maximum allow number of standard deviations away from 0, the PDF component is either all-updrafty or all-downdrafty, and the code avoids expensive computations where large magnitude values can potentially be fed into ERF or EXP. Of course, the results are not bit-for-bit with the previous version, meaning that there are some situations where these thresholds come into effect. However, plots of all cases show no visible differences in w_up_in_cloud and w_down_in_cloud. Since w_up_in_cloud and w_down_in_cloud are not included in normal stats output, this commit does not change the bit-for-bitness of CLUBB code. 2022-08-16 20:18:26 -0500a7de6b09f4f0e09b48f663e2432b3e98b29bfe60I altered the w_up_in_cloud and w_down_in_cloud code so that aeditpdf_closure_module.F90pdf_closure_module.F90493cf3aafada57c53b1508b2b5990ce0a7dcafea1660756368000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have optimized the new w_up_in_cloud and w_down_in_cloud code by only doing repeated operations one time and then saving them as a local variable. Since the numerical order of operations changes for the argument to the EXP term, the results will differ at the level of numerical round-off, making this revision not bit-for-bit with the last revision. This only affects the w_up_in_cloud and w_down_in_cloud statistical output variables, which in turn are not output as part of standard_stats.in. 2022-08-17 12:12:48 -0500493cf3aafada57c53b1508b2b5990ce0a7dcafeaI have optimized the new w_up_in_cloud and w_down_in_cloud code byeditpdf_closure_module.F90advance_wp2_wp3_module.F90fill_holes.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90ab4282b0f6e0a3a1e3404836c96121fb79a872d41661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRefactored fill_holes_vertical to make GPUization simple. This is BIT_CHANGING, but results are bit-for-bit when using -O0 optimization, thus it is not answer changing. The first pass over each grid column will not parallelize well, the k-loop needs to be done in serial. Maximum parallelization has been exposed for the global hole-filling though, at the cost of occasionally doing unneccesary calculations. larson-group/clubb#972. 2022-08-30 12:45:31 -0500ab4282b0f6e0a3a1e3404836c96121fb79a872d4Refactored fill_holes_vertical to make GPUization simple. This is BIT_CHANGING, but results are bit-for-bit when using -O0 optimization, thus it is not answer changing. The first pass over each grid column will not parallelize well, the k-loop needs to be done in serial. Maximum parallelization has been exposed for the global hole-filling though, at the cost of occasionally doing unneccesary calculations. larson-group/clubb#972.editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editfill_holes.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editclubb_api_module.F90fill_holes.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90constants_clubb.F90b0eeb2ebed4160829305c9a13bc60818b045fb221661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving fill_holes_multiplicative and replacing magic numbers with parameters from constants_clubb. larson-group/clubb#972 2022-08-30 12:45:31 -0500b0eeb2ebed4160829305c9a13bc60818b045fb22Removing fill_holes_multiplicative and replacing magic numbers with parameters from constants_clubb. larson-group/clubb#972editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editfill_holes.F90editadvance_wp2_wp3_module.F90editconstants_clubb.F90editadvance_xm_wpxp_module.F90fill_holes.F90advance_clubb_core_module.F90stats_clubb_utilities.F90clubb_api_module.F90mono_flux_limiter.F90advance_helper_module.F900a21a67e8c0d8373ae4315241b338842259b1d691661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972 2022-08-30 12:45:31 -05000a21a67e8c0d8373ae4315241b338842259b1d69Moving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972editmono_flux_limiter.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editstats_clubb_utilities.F90editfill_holes.F90latin_hypercube_driver_module.F9018677b4114aff3b59943c43e9207fc7a8630060e1661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972 2022-08-30 12:45:31 -050018677b4114aff3b59943c43e9207fc7a8630060eMoving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972editlatin_hypercube_driver_module.F90mixing_length.F90saturation.F90advance_clubb_core_module.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90T_in_K_module.F90advance_helper_module.F9009720448888edc3117ea736bfa140a0c60bd6f041662512657000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving elementalness from sat_vapor_press_liq and making interal procedures subroutines rather than functions to prevent unneccesary data copies. Doing the same for thlm2T_in_K since it is often used in conjunction with sat_vapor_press_liq. Bit-for-bit confirmed with O0 using all single column cases with or without l_diag_Lscale_from_tau, and with cam_coarse_res. larson-group/clubb#972 2022-09-06 20:04:17 -050009720448888edc3117ea736bfa140a0c60bd6f04Removing elementalness from sat_vapor_press_liq and making interal procedures subroutines rather than functions to prevent unneccesary data copies. Doing the same for thlm2T_in_K since it is often used in conjunction with sat_vapor_press_liq. Bit-for-bit confirmed with O0 using all single column cases with or without l_diag_Lscale_from_tau, and with cam_coarse_res. larson-group/clubb#972editadvance_clubb_core_module.F90editadvance_helper_module.F90editT_in_K_module.F90editclubb_api_module.F90editstats_clubb_utilities.F90editmixing_length.F90editsaturation.F90editpdf_closure_module.F90saturation.F90grid_class.F90T_in_K_module.F90clubb_api_module.F90a865626a53fb1243fe232896e89537ea0cb476841662512657000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding comments. 2022-09-06 20:04:17 -0500a865626a53fb1243fe232896e89537ea0cb47684Adding comments.editgrid_class.F90editclubb_api_module.F90editsaturation.F90editT_in_K_module.F90pdf_closure_module.F90bf79a8d55fe3ca7aacc106b68052a316cc3e359e1662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding initial subroutine calc_ice_cloud_frac_component. 2022-09-09 11:32:21 -0500bf79a8d55fe3ca7aacc106b68052a316cc3e359eAdding initial subroutine calc_ice_cloud_frac_component.editpdf_closure_module.F90pdf_closure_module.F90saturation.F90stats_clubb_utilities.F90advance_clubb_core_module.F9060041d793c8fa3229f278a20ec6bdd9fc468f39f1662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comCleaning up new subroutine calc_liquid_cloud_frac_component, and making sat_mixrat_ice a subroutine that works the same way as sat_mixrat_liq. larson-group/clubb#972 2022-09-09 11:32:21 -050060041d793c8fa3229f278a20ec6bdd9fc468f39fCleaning up new subroutine calc_liquid_cloud_frac_component, and making sat_mixrat_ice a subroutine that works the same way as sat_mixrat_liq. larson-group/clubb#972editstats_clubb_utilities.F90editsaturation.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90pdf_closure_module.F90448112afd8d8a22416f31cdb5ae6ec00a5558d0e1662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comComment update 2022-09-09 11:32:21 -0500448112afd8d8a22416f31cdb5ae6ec00a5558d0eComment updateeditpdf_closure_module.F90saturation.F90f2673f56e2eb850b910f74fa7f50ed589a9aebb31662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving these paratheses is BIT_CHANGING since it modifies the order of operations, but allows for the multiplication and subraction to be done in parallel for complex pipelines. 2022-09-09 11:32:21 -0500f2673f56e2eb850b910f74fa7f50ed589a9aebb3Removing these paratheses is BIT_CHANGING since it modifies the order of operations, but allows for the multiplication and subraction to be done in parallel for complex pipelines.editsaturation.F90output_netcdf.F90fb2e67620ac50c35b5cf20cb5e18a1a96d504a861664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comImprovements. Netcdf output is now functional and we can detect errors with multiple columns even when the standard output is identical. 2022-10-05 11:47:10 -0500fb2e67620ac50c35b5cf20cb5e18a1a96d504a86Improvements. Netcdf output is now functional and we can detect errors with multiple columns even when the standard output is identical.editoutput_netcdf.F90diagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/function_pick_out.pya6da22b4021eb5de7b06dcfd65f057fb486231231665135889000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnI have updated the diagnostic. Main changes: 1. Merge Prof. Larson's tuner analyze_sensitivity_matrix. But domatrix is false by default, because the tuner is not the latest version. 2. Mergeing Kate's changes in function_pick_out.py. CAM's FV dycore can be handled. 3. Plotting profiles below 700hPa. 4. Merge Brian's flag for DJF mean. 5. Creating new regional files for tuner, see draw_plots_hoz_2D.py. 2022-10-07 04:44:49 -0500a6da22b4021eb5de7b06dcfd65f057fb48623123I have updated the diagnostic. Main changes: 1. Merge Prof. Larson's tuner analyze_sensitivity_matrix. But domatrix is false by default, because the tuner is not the latest version. 2. Mergeing Kate's changes in function_pick_out.py. CAM's FV dycore can be handled. 3. Plotting profiles below 700hPa. 4. Merge Brian's flag for DJF mean. 5. Creating new regional files for tuner, see draw_plots_hoz_2D.py.editdiagnostic_v2_0/function_pick_out.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/draw_plots_hoz_3D.pyeditdiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/draw_large_scale_low.py4cbdc2fc796e609d89b1ae3c1bd5f707ac333c461665136616000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnPlotting file for large scale variables. 2022-10-07 04:56:56 -05004cbdc2fc796e609d89b1ae3c1bd5f707ac333c46Plotting file for large scale variables.adddiagnostic_v2_0/draw_large_scale_low.pyadvance_xm_wpxp_module.F907e894655b82f891a5b60ba4e0e6670ff3c0fa5b01665426176000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdds commented-out line that prevents the monotonic flux limiter from acting on rtm. The comments are included to remind us of how to do this in case we choose to do so in the future. 2022-10-10 13:22:56 -05007e894655b82f891a5b60ba4e0e6670ff3c0fa5b0Adds commented-out line that prevents the monotonic fluxeditadvance_xm_wpxp_module.F90mono_flux_limiter.F904ba46bf534c3ed32f9227282f94b102f7006918e1665672953000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating monotonic flux limiter code to remove spikes. (#1038) Also putting a commented out code change in advance_xm_wpxp, in case shutting of the flux limiter entirely for rtm is preferred. See https://github.com/NCAR/amwg_dev/discussions/134 for discussion. This commit will be BIT_CHANGING although the differences are only obvious in sensitive cases like arm_97. 2022-10-13 08:55:53 -06004ba46bf534c3ed32f9227282f94b102f7006918eUpdating monotonic flux limiter code to remove spikes. (#1038)editmono_flux_limiter.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F90mono_flux_limiter.F90f30bf0d926336356fdb094f944cfb1174a1ec2251665761524000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCreating new flags to control monotonic flux limiter (#1039) * Creating new flags to control monotonic flux limiter and the IF statement fix for the spikes found in CAM. * Removing no-longer-necessary logical l_mono_flux_lim. * Adding requested changes from PR (intent statements and editing error statement). * Accidentally set flag to false. Changing to true. 2022-10-14 09:32:04 -0600f30bf0d926336356fdb094f944cfb1174a1ec225Creating new flags to control monotonic flux limiter (#1039)editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90editmodel_flags.F90editadvance_clubb_core_module.F90editclubb_api_module.F90components/eam/src/physics/cam/clubb_intr.F905ea2d151462b9f4b915e1b57f8f956f7e363ae461665761646000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/1039. 2022-10-14 09:34:06 -06005ea2d151462b9f4b915e1b57f8f956f7e363ae46Updating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/1039.editcomponents/eam/src/physics/cam/clubb_intr.F90pdf_closure_module.F90stats_variables.F90stats_clubb_utilities.F90advance_clubb_core_module.F90clubb_api_module.F90stats_zt_module.F903bdab2ca5a22a425da62f8cae4c8e01097f44fa81665787786000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding cloudy_updraft_frac and cloudy_downdraft_frac as outputs to the calculate_w_up_in_cloud code. These fields are non-interactive for the standard set of cases. Thus, all cases are bit-for-bit identical. However, for the w_up_in_cloud and w_down_in_cloud results themselves, it is possible that results might not be bit-for-bit since the location of the max(eps, ...) clipping in the denominator is changed. However, results should not be appreciable different. 2022-10-14 17:49:46 -05003bdab2ca5a22a425da62f8cae4c8e01097f44fa8I am adding cloudy_updraft_frac and cloudy_downdraft_frac aseditstats_zt_module.F90editclubb_api_module.F90editstats_variables.F90editstats_clubb_utilities.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90components/eam/src/physics/cam/clubb_intr.F9027a8c6d30493b2075a3082e341f469517a377d4d1665792164000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduModified for changes made to call to advance_clubb_core_api. 2022-10-14 19:02:44 -050027a8c6d30493b2075a3082e341f469517a377d4dModified for changes made to call to advance_clubb_core_api.editcomponents/eam/src/physics/cam/clubb_intr.F90mono_flux_limiter.F90200706b307be40ceb42f6121bd0f7d1be2b116c61667919348000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMinor adjustment to eliminate spikes in thlm tendencies from the monotonic flux limiter. (#1043) See https://github.com/NCAR/amwg_dev/discussions/134. This commit will be BIT_CHANGING. Differences are mainly noticeable in the more sensitive cases. 2022-11-08 07:55:48 -0700200706b307be40ceb42f6121bd0f7d1be2b116c6Minor adjustment to eliminate spikes in thlm tendencies from the monotonic flux limiter. (#1043)editmono_flux_limiter.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90lapack_wrap.F90penta_lu_solver.F90matrix_solver_wrapper.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90952c923222bf8901dc9b388f286872a73e6c609d1668629680000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking interface for matrix solvers. 2022-11-16 14:14:40 -0600952c923222bf8901dc9b388f286872a73e6c609dMaking interface for matrix solvers.editadvance_windm_edsclrm_module.F90addpenta_lu_solver.F90editadvance_xm_wpxp_module.F90addmatrix_solver_wrapper.F90editadvance_wp2_wp3_module.F90editlapack_wrap.F90editmono_flux_limiter.F90editadvance_xp2_xpyp_module.F90penta_lu_solver.F90matrix_solver_wrapper.F90advance_xm_wpxp_module.F90lapack_wrap.F906d88c22f60109415cdedeafb87ef6ab88ca1b07e1668629680000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking tridag tridiag everywhere, making sol soln, and adding intent comments. 2022-11-16 14:14:40 -06006d88c22f60109415cdedeafb87ef6ab88ca1b07eMaking tridag tridiag everywhere, making sol soln, and adding intent comments.editadvance_xm_wpxp_module.F90editmatrix_solver_wrapper.F90editlapack_wrap.F90editpenta_lu_solver.F90constants_clubb.F90mono_flux_limiter.F905baacd72ae885dceeb8a535b8d190c8be73a69311669057917000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comA different way of dealing with monotonic flux limiter spikes (#1046) * A different way of dealing with monotonic flux limiter spikes in CAM, by increasing the value of thl_tol_mfl. ALso reverts the earlier fix. BIT_CHANGING. See https://github.com/NCAR/amwg_dev/discussions/134#discussioncomment-4165447. * Reducing value of thl_tol_mfl from 0.5 to 0.2. This will be BIT_CHANGING. 2022-11-21 12:11:57 -07005baacd72ae885dceeb8a535b8d190c8be73a6931A different way of dealing with monotonic flux limiter spikes (#1046)editconstants_clubb.F90editmono_flux_limiter.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90constants_clubb.F90numerical_check.F90pdf_closure_module.F90grid_class.F90sfc_varnce_module.F90269513ec0b95ddee2bff960d0c74a4ceccb8feef1669128959000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSteffens tuner fixer branch (#1041) * Clubb ticket #1025: Implemented changes dealing with pdf_params%thl1/2 and wp2 floating point errors occurring in tuning runs. BIT_CHANGING - Added command-line option -t/--tuner to compile.bash which enables the -DTUNER compiler flag. - Added line to gfortran compilation config file to easily disable openMP - Added a couple error messages and cleaned up some instances of error handling in src/error.F90, src/clubb_driver.F90, and src/CLUBB_core/advance_clubb_core_module.F90 - Added global constant wp2_max in src/CLUBB_core/constants_clubb.F90 which sets the upper bound for wp2 - In pdf_closure, added sanity checks for pdf_params%thl1/2 (>=190K, <=1000K) - Added debug warning in src/CLUBB_core/advance_wp2_wp3_module.F90 when wp2 is clipped. - Added wp2_sfc clipping in src/CLUBB_core/sfc_varnce_module.F90 - Added debug_level_check to NaN check in clubb_driver.F90 - Added mention of the new compiler option to the README 2022-11-22 08:55:59 -0600269513ec0b95ddee2bff960d0c74a4ceccb8feefSteffens tuner fixer branch (#1041)editadvance_wp2_wp3_module.F90editconstants_clubb.F90editadvance_clubb_core_module.F90editgrid_class.F90editpdf_closure_module.F90editsfc_varnce_module.F90editnumerical_check.F90components/eam/src/physics/cam/clubb_intr.F9082ac519ddad0a61b0b0724326452fc96da3156791669260943000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb changes. 2022-11-23 21:35:43 -060082ac519ddad0a61b0b0724326452fc96da315679Making compatible with latest clubb changes.editcomponents/eam/src/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F90matrix_solver_wrapper.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90127883ca8f0dce455123056d72efb0cdef4794ca1669261456000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding capability to change matrix solving method via clubb_config_flags. 2022-11-23 21:44:16 -0600127883ca8f0dce455123056d72efb0cdef4794caAdding capability to change matrix solving method via clubb_config_flags.editadvance_clubb_core_module.F90editmono_flux_limiter.F90editmatrix_solver_wrapper.F90editadvance_xp2_xpyp_module.F90editmodel_flags.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90matrix_solver_wrapper.F90d8493869b48641432cac85c681884b5d5bf203a61669261456000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comFixing small bug, need to pass _copy arrays to prevent lapack mangling the real ones. 2022-11-23 21:44:16 -0600d8493869b48641432cac85c681884b5d5bf203a6Fixing small bug, need to pass _copy arrays to prevent lapack mangling the real ones.editmatrix_solver_wrapper.F90penta_lu_solver.F904588198937b2b4dcc148fc980125b5ea87fa33541669261456000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking GPU and CPU versions of the penta_lu solver the same as discussed in larson-group/clubb#1024. 2022-11-23 21:44:16 -06004588198937b2b4dcc148fc980125b5ea87fa3354Making GPU and CPU versions of the penta_lu solver the same as discussed in larson-group/clubb#1024.editpenta_lu_solver.F90mixing_length.F9065b7c1dd0001b0cb328a3b61ffa72e228b14c91c1669684430000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added "smooth" max clipping for invrs_tau_shear, which is a variable that is supposed to be positive definite, yet was obtaining negative values at the model lower boundary owing to linear extension at the boundaries as part of the linear interpolation call. This change is BIT_CHANGING. 2022-11-28 19:13:50 -060065b7c1dd0001b0cb328a3b61ffa72e228b14c91cI added "smooth" max clipping for invrs_tau_shear, which is a variableeditmixing_length.F90adg1_adg2_3d_luhar_pdf.F90ac76c76a553d2c52a3156258c0afe41f66bea7861670362528000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comADG1_pdf_driver subroutine port with OpenACC Added OpenACC related flags in linux_x86_64_nvhpc_casper.bash You can enable/disable OpenACC compilation using OPENACC=true/false. Added OpenACC directives in ADG1_pdf_driver subroutine. 2022-12-06 15:35:28 -0600ac76c76a553d2c52a3156258c0afe41f66bea786ADG1_pdf_driver subroutine port with OpenACCeditadg1_adg2_3d_luhar_pdf.F90adg1_adg2_3d_luhar_pdf.F90512e68baec75eb6f5abc36582d6407fb9dceb1891670362528000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comReplacing old elemental ADG1_w_closure with new GPUized one. Making G_unit tests work with new version. Also making mixt_frac_max_mag a scalar since it was only being used as such. larson-group/clubb#1049 2022-12-06 15:35:28 -0600512e68baec75eb6f5abc36582d6407fb9dceb189Replacing old elemental ADG1_w_closure with new GPUized one. Making G_unit tests work with new version. Also making mixt_frac_max_mag a scalar since it was only being used as such. larson-group/clubb#1049editadg1_adg2_3d_luhar_pdf.F90components/eam/src/physics/cam/clubb_intr.F90013862237dcc4cd75e8a3e51f7d0caafe9e419461670635152000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the clubb_intr.F90 file in the clubb_silhs_devel branch to match the new style of CLUBB parameter declaration that is found in the v3_convection_candidate branches. 2022-12-09 19:19:12 -0600013862237dcc4cd75e8a3e51f7d0caafe9e41946I updated the clubb_intr.F90 file in the clubb_silhs_devel branch toeditcomponents/eam/src/physics/cam/clubb_intr.F90parameters_tunable.F90936783d00f3c1e950c0092e31b019249b16042f71670635449000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI can now safely remove all the "ifdef E3SM" statements from CLUBB's parameters_tunable.F90. This code is now located in the clubb_intr.F90 portion of E3SM. 2022-12-09 19:24:09 -0600936783d00f3c1e950c0092e31b019249b16042f7I can now safely remove all the "ifdef E3SM" statements from CLUBB'seditparameters_tunable.F90matrix_solver_wrapper.F90lapack_wrap.F9038f9da3d580e38623856fb89bf73e274c5207f791673472578000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing column loop into lapack wrap. 2023-01-11 15:29:38 -060038f9da3d580e38623856fb89bf73e274c5207f79Pushing column loop into lapack wrap.editlapack_wrap.F90editmatrix_solver_wrapper.F90mixing_length.F90saturation.F90model_flags.F90constants_clubb.F9021426fea400c37cfd10dbde5beb0f96690a2f8381673549655000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRestructuring and Porting of Compute_mixing_length subroutine(Phase 1) (#1052) * Restructuring and Porting of Compute_mixing_length subroutine(Phase 1) Restructure: The compute_mixing_length is one of the top most routine taking 35-50% of the total time in a single timestep. The subroutine has been restructured to push the i-loop further down to extract vectorization and parallelization. The restructuring also involves introduction of sat_mixrat_liq_acc routines to extract parallelism when called inside a OpenACC parallel region. Porting: OpenACC directives are inserted to port the restructured compute_mixing_length code on to the GPUs. This port is currently unoptimized and there is still room for improvement. NOTE: Currently, l_sat_mixrat_lookup = false and saturation_formula = saturation_flatau (Earthworks config options) case is supported on OpenACC build. Any other options works on CPUs as usual. OpenACC declare create directives are inserted in model_flags and constants_clubb, as these module variables are used inside the saturation routines. * Added debug message about only supporting l_sat_mixrat_lookup = false and saturation_formula = saturation_flatau on GPUs Answers are Bit for Bit with arm-multicolumn case + nvhpc compiler. * Changing CLUBB debug level 1 to 0 for the saturation formula support running on GPUs * Changing indentation to make gfortran happy, it wants ifdefs to start at the beginning of the line. * Adding use statements for error checks and printouts, also making the errors set err_code to clubb_fatal_error. Co-authored-by: huebler <huebler@uwm.edu> 2023-01-12 12:54:15 -060021426fea400c37cfd10dbde5beb0f96690a2f838Restructuring and Porting of Compute_mixing_length subroutine(Phase 1) (#1052)editsaturation.F90editconstants_clubb.F90editmixing_length.F90editmodel_flags.F90mixing_length.F90saturation.F90advance_clubb_core_module.F90model_flags.F9038b63ff28ea145707d4ee1d9469013ee20b1697b1674081416000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRestructuring and Porting of Compute_mixing_length subroutine(Phase 2) (#1054) * Restructuring and Porting of Compute_mixing_length subroutine(Phase 2) Restructure: sat_mixrat_liq_2D_acc is being directly called instead of calling the 1D version inside the column loop. Changing sat_mixrat_liq_2D_acc to a subroutine from a function and adding output array, start_index as additional argument. This is a workaround for passing sub-arrays. The OpenACC doen't like the sub-arrays being passed and fails the validation. Porting: OpenACC directives are added inside sat_mixrat_liq_2D_acc for porting Validation: Answers are Bit for Bit with arm-multicolumn case + nvhpc compiler * Fix for compilation issues Issue 1: Missed out declaring 'start_index' while intergrating the change Issue 2: The use of error_code module and the procedures inside it causes OpenACC compilation issues when run on the device. * Removing the sat_mixrat_liq_acc and sat_mixrat_liq_2D_acc, making the normal sat_mixrat_liq work for all current use cases, and making the other versions of sat_mixrat_liq (bolton,gfdl,lookup) functional with OPENACC. Co-authored-by: huebler <huebler@uwm.edu> 2023-01-18 16:36:56 -060038b63ff28ea145707d4ee1d9469013ee20b1697bRestructuring and Porting of Compute_mixing_length subroutine(Phase 2) (#1054)editmixing_length.F90editsaturation.F90editmodel_flags.F90editadvance_clubb_core_module.F90mono_flux_limiter.F909f86ec344fcdd14a084c6249520c33815e225c241674153381000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBreaking up column loop in mono_flux_limiter. This may not be the final form for GPUization, but it's definitely a start, no longer do we have to copy single column variables to multicolumn ones anywhere. (#1051) 2023-01-19 12:36:21 -06009f86ec344fcdd14a084c6249520c33815e225c24Breaking up column loop in mono_flux_limiter. This may not be the final form for GPUization, but it's definitely a start, no longer do we have to copy single column variables to multicolumn ones anywhere. (#1051)editmono_flux_limiter.F90penta_lu_solver.F90matrix_solver_wrapper.F90model_flags.F90tridiag_lu_solver.F90lapack_wrap.F90a5ae081b3485ebbd6b470a1bf077eaf8ba2a29791674153404000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdding tridiag_lu solver (#1056) * Adding tridiag_lu solver * Changing low to lower in tridiag_lu and penta_lu, also fixing up some spacing. * Making variables that represent matrix solutions more consistently named. 2023-01-19 12:36:44 -0600a5ae081b3485ebbd6b470a1bf077eaf8ba2a2979Adding tridiag_lu solver (#1056)editpenta_lu_solver.F90editmatrix_solver_wrapper.F90editmodel_flags.F90addtridiag_lu_solver.F90editlapack_wrap.F90mixing_length.F90adg1_adg2_3d_luhar_pdf.F9079e3b2b05f93ffc04d514aad915c1a0aaec0f45f1674580201000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comAdding OpenACC data directives for mixing length and adg routines OpenACC structured data regions are added to optimize the data transfers between CPU and GPU. These data regions will converted to unstrucutred data region in the later optimization phase. Results are bit for bit. 2023-01-24 18:10:01 +010079e3b2b05f93ffc04d514aad915c1a0aaec0f45fAdding OpenACC data directives for mixing length and adg routineseditmixing_length.F90editadg1_adg2_3d_luhar_pdf.F90adg1_adg2_3d_luhar_pdf.F90466f229f2b977abcc4be9ac96c4ac11b818d1d371674585724000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing error causing GPU code not to run. Some variables to be copied were labelled as (ngrdcol,nz) when it should be (:ngrdcol,:nz). I've just removed the data length specifiers completely since they are not neccesary in general. 2023-01-24 12:42:04 -0600466f229f2b977abcc4be9ac96c4ac11b818d1d37Fixing error causing GPU code not to run. Some variables to be copied were labelled as (ngrdcol,nz) when it should be (:ngrdcol,:nz). I've just removed the data length specifiers completely since they are not neccesary in general.editadg1_adg2_3d_luhar_pdf.F90stats_clubb_utilities.F90saturation.F90e0a9c3de208ee1855d4b94dc8320d95894c1bc6b1674680903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comGPUizing sat_mixrat_ice_2D. 2023-01-25 15:08:23 -0600e0a9c3de208ee1855d4b94dc8320d95894c1bc6bGPUizing sat_mixrat_ice_2D.editsaturation.F90editstats_clubb_utilities.F90advance_clubb_core_module.F90calc_pressure.F90ef8ea9df21e00777179b628e5deaf68842411ecd1675364876000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing column loop into calculate_thvm 2023-02-02 13:07:56 -0600ef8ea9df21e00777179b628e5deaf68842411ecdPushing column loop into calculate_thvmeditcalc_pressure.F90editadvance_clubb_core_module.F90calc_pressure.F90b0a3a8fc353a232b661ebe6fa26c264d599049931675364876000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving update_pressure since it is no longer called anywhere in clubb or host models. The addition of this subroutine was discussed in larson-group/e3sm#6 and the removal of the call to it was discussed in larson-group/clubb#926. 2023-02-02 13:07:56 -0600b0a3a8fc353a232b661ebe6fa26c264d59904993Removing update_pressure since it is no longer called anywhere in clubb or host models. The addition of this subroutine was discussed in larson-group/e3sm#6 and the removal of the call to it was discussed in larson-group/clubb#926.editcalc_pressure.F90calc_pressure.F906f870bb99c6f94145ebef421ea0435ac083e84f11675552920000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving update_pressure from public list. This was causing compilation crashes. RESOLVED:8c7230fecb877d04fb129ef5e143e0993b4b29b1 2023-02-04 17:22:00 -06006f870bb99c6f94145ebef421ea0435ac083e84f1Removing update_pressure from public list. This was causing compilation crashes. RESOLVED:8c7230fecb877d04fb129ef5e143e0993b4b29b1editcalc_pressure.F90saturation.F90grid_class.F90turbulent_adv_pdf.F90mean_adv.F904ed2ca7249d959da9e95b40faf2475fb3322f1741675791268000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comGPUizing some helping procedures. 2023-02-07 11:34:28 -06004ed2ca7249d959da9e95b40faf2475fb3322f174GPUizing some helping procedures.editmean_adv.F90editgrid_class.F90editsaturation.F90editturbulent_adv_pdf.F90adg1_adg2_3d_luhar_pdf.F905543d4fdcd60911bcef0658fc693b9ddc50a0e4a1675791268000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving sigma_sqd_w from the acc data copyout statement. This is a bug which was causing the code to crash when not using managed memory. 2023-02-07 11:34:28 -06005543d4fdcd60911bcef0658fc693b9ddc50a0e4aRemoving sigma_sqd_w from the acc data copyout statement. This is a bug which was causing the code to crash when not using managed memory.editadg1_adg2_3d_luhar_pdf.F90pdf_utilities.F90pdf_closure_module.F9002732556bd0ed380f305bb59f5e421e5a4c615a81675902842000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPorting pdf_closure subroutine with OpenACC (#1059) * Porting pdf_closure subroutine with OpenACC OpenACC directives are added to pdf_closure subroutine. The necessary structured data region is also added for optimzing data movement across kernels. There is opportunity to task parallelize using streams and will be explored in the future. Answers are bit for bit. * Fixing the copyin directives * Making work without managed memory. 2023-02-08 18:34:02 -060002732556bd0ed380f305bb59f5e421e5a4c615a8Porting pdf_closure subroutine with OpenACC (#1059)editpdf_closure_module.F90editpdf_utilities.F90stats_clubb_utilities.F90stats_variables.F90advance_clubb_core_module.F90stats_zm_module.F9074d62d932283ec7f668d1ab7a7eb5cf4c2518e311676661825000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding wp3_on_wp2_cfl_num to CLUBB's output stats. 2023-02-17 13:23:45 -060074d62d932283ec7f668d1ab7a7eb5cf4c2518e31Adding wp3_on_wp2_cfl_num to CLUBB's output stats.editstats_clubb_utilities.F90editstats_variables.F90editadvance_clubb_core_module.F90editstats_zm_module.F90advance_clubb_core_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F902cfb4126e2acaad338d58387801f2f0e69f2be661677519729000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly. 2023-02-27 11:42:09 -06002cfb4126e2acaad338d58387801f2f0e69f2be66Removing usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly.editadvance_clubb_core_module.F90editadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90pdf_closure_module.F9090851771d55ebaeb104a3bd7edae92ffd4a248a61677613563000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068) * Clubb ticket #1025: Implemented way to make esa tuner reproducible, hid error output of optional diagnostic variables behind check, fixed parallelization issue with tuner, esa max_iters parameter is now in stats namelist, fixed issue with TUNER compiler directive, some small fixes. - New namelist variables prescribed_rand_seed and l_use_prescribed_rand_seed determine if the esa tuner will use a random or a fixed value as random seed. Added descriptions to README. - Added max_iters to stats namelist to make it more modifiable. - Renamed stp_adjst_intercept_in and stp_adjst_slope_in to stp_adjst_shift_in and stp_adjst_factor_in, respectively, to better reflect their influence on step size. - The error output in src/CLUBB_core/pdf_closure_module.F90 for the diagnostic variables wprtp2, wpthlp2, wprtpthlp, and rcp2 is now hidden behind existence checks for these variables. And a clarification was added to "#ifdef TUNER" directive. - NetCDF file access caused the tuner to crash in parallel mode (-fopenmp flag in config file and multiple cases). Adding an $OMP CRITICAL structure around the call to stats_init in clubb_driver.F90 fixed that. - Fixed compile/README. Config files are specified with the -c option. - The -t option in run_scripts/run_tuner.bash interfered with the previous usage of the TUNER compiler directive. Renamed the old TUNER directive to NR_SP, a short for "numerical recipes, single precision". TUNER now is the option to "turn on" code changes required to run the tuner. 2023-02-28 13:46:03 -060090851771d55ebaeb104a3bd7edae92ffd4a248a6Clubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068)editpdf_closure_module.F90pdf_utilities.F90mixing_length.F90saturation.F90advance_clubb_core_module.F90mean_adv.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90grid_class.F90turbulent_adv_pdf.F9061ea0db56546ea2946cb3c0ee368fd57752c14511678297579000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGpu updates (#1070) * Fixing bug. This was only triggered when l_input_fields=.true., which I am only testing because it needs to be true so that I can test ADG2_driver. * Removing usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly. * Making openacc statements more consistent. Ensuring all statments on double loops have specified gang and vector, and that all parallel loops have an end parallel loop statment at the end of them. Everything BFB on CPUs and GPUs. * Pushing acc data region to outermost parts of mixing_length. * Removing pdf_implicit_coefs_terms from acc copyin and copyout. It is only used when iiPDF_type == iiPDF_new .or. iiPDF_type == iiPDF_new_hybrid, so we do not need to do any copying with it. The inclusion of it also caused the data statement to copy unallocated arrays, which are just garbage pointers, and that was causing random occasional crashes (either segfaults or gpu out of memory). * The update device clauses for return variables seems to only be requried for arrays contained in types. See https://github.com/larson-group/clubb/issues/1049\#issuecomment-1440624778 * Moving acc end data to end of pdf_closure. This reuqired removing any conditional return statements that appear before the final return, since we're not allowed to branch out of an acc region early. I also moved a large printout statement outside of a loop. The only reason it was in the loop to begin with was because pdf_params used to be an array of types, but now is a type of arrays, allowing us to print the full arrays directly. * Making loop an acc loop. If we weren't outputting w_[up/down]_in_cloud (iw_up_in_cloud <= 0 .or. iw_down_in_cloud <= 0, then these arrays were only being zerod out on the CPU and would've getting overwritten by the uninitialized GPU data at the end of the data statement. This change causes the arrays to get correctly zerod out on the GPU when we need. * Update VariableGroupNondimMoments.py Fixed a typo * Merging new changes from master * Removing need for -gpu=deepcopy, pushing some acc data statements up call tree, and replacing some acc data statements with acc delare statements so that return statements can be added back in. * Adding back an acc loop that was accidentally removed during a merge. --------- Co-authored-by: Brian Griffin <31553422+bmg929@users.noreply.github.com> 2023-03-08 11:46:19 -060061ea0db56546ea2946cb3c0ee368fd57752c1451Gpu updates (#1070)editpdf_utilities.F90editgrid_class.F90editmixing_length.F90editadg1_adg2_3d_luhar_pdf.F90editmean_adv.F90editturbulent_adv_pdf.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editsaturation.F90mono_flux_limiter.F90fdf454198c75d605df4d989599620e23c42135fe1678350700000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comImplements Thomas Toniazzo's bug fix for spike removal in the monotonic flux limiter. See https://github.com/larson-group/clubb_release/pull/11/files This code change is expected to be BIT_CHANGING for cases in which `l_predict_upwp_vpwp = T`, `l_mono_flux_lim_um = T` or `l_mono_flux_lim_vm = T`, and the monotonic flux limiter is triggered. This bug fix prevents non-conservation of momentum when the vertical integral of either of the wind components `um` or `vm` is negative. 2023-03-09 02:31:40 -0600fdf454198c75d605df4d989599620e23c42135feImplements Thomas Toniazzo's bug fix for spike removaleditmono_flux_limiter.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90sfc_varnce_module.F90e2ffb7330b8d80d9d895759c6a1781239ec001411678723565000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMaking 'a_const' into a CLUBB tunable parameter. (#1072) * Converting the sfc_varnce_module.F90 parameter 'a_const' into a CLUBB tunable parameter. Results should be bit-for-bit since it will be set to 1.8 and with l_vary_convect_depth=F this is the standard value. Some discussion in ticket #994. * Completing requested changes, see PR #1072. 2023-03-13 10:06:05 -0600e2ffb7330b8d80d9d895759c6a1781239ec00141Making 'a_const' into a CLUBB tunable parameter. (#1072)editclubb_api_module.F90editadvance_clubb_core_module.F90editsfc_varnce_module.F90editparameter_indices.F90editparameters_tunable.F90components/eam/src/physics/cam/clubb_intr.F90502b6d142e2d71530febdcb89fed0fb126daddfb1678723665000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/1072. 2023-03-13 11:07:45 -0500502b6d142e2d71530febdcb89fed0fb126daddfbUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/1072.editcomponents/eam/src/physics/cam/clubb_intr.F90Skx_module.F90pdf_closure_module.F90sigma_sqd_w_module.F90advance_clubb_core_module.F90T_in_K_module.F901463a2c08c088d8c28aaf6831e88e234b76bdddd1678812234000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPdf closure driver gpuization (#1071) * GPUizing pdf_closure_driver, testing still needed, bug likely. * Making data movement better. Also fixed some random things. Still need to return returns. * Adding back a couple return statments. Moving a comment where it should be. GPUizing a missed loop. * Making arguements list satisfy standards. * Making arguements list satisfy standards. Also adding max(1,hydrometdim) to hydromet inputs. * Capitalizing K * Making the error case in compute_cloud_cover behavior a bit differently. This allows the error to be detected immediately by GPU runs as well. * Calling compute_cloud_cover only needs to be done if l_use_cloud_cover = .true. 2023-03-14 11:43:54 -05001463a2c08c088d8c28aaf6831e88e234b76bddddPdf closure driver gpuization (#1071)editSkx_module.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editsigma_sqd_w_module.F90editT_in_K_module.F90advance_clubb_core_module.F906dd01b5920350c08035fa76d513f4086340a43f71679006580000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving compute_cloud_cover outside of if ( l_use_cloud_cover ) then statement, the cloud_cover and rcm_in_layer variables they compute aren't output in clubb_standalone, but are in cam, causing cam bit diff tests to break. 2023-03-16 17:43:00 -05006dd01b5920350c08035fa76d513f4086340a43f7Moving compute_cloud_cover outside of if ( l_use_cloud_cover ) then statement, the cloud_cover and rcm_in_layer variables they compute aren't output in clubb_standalone, but are in cam, causing cam bit diff tests to break.editadvance_clubb_core_module.F90advance_clubb_core_module.F90f635d227db08b38aa005bebbc8d0e63c4d6ea9ce1679530369000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2. 2023-03-22 19:12:49 -0500f635d227db08b38aa005bebbc8d0e63c4d6ea9ceAdding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.editadvance_clubb_core_module.F90grid_class.F90turbulent_adv_pdf.F90mixing_length.F90pdf_utilities.F90saturation.F90advance_clubb_core_module.F90mean_adv.F90Skx_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90sigma_sqd_w_module.F90T_in_K_module.F90parameters_model.F90adba51a83aea7bd6e044720c58e4d27596b235fa1679711434000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSmall GPU fixes (#1076) * Fixing small things that I caught by adding the default(present) onto acc loops. * Moving default(present) to the end because it looks nicer there. 2023-03-24 21:30:34 -0500adba51a83aea7bd6e044720c58e4d27596b235faSmall GPU fixes (#1076)editT_in_K_module.F90editturbulent_adv_pdf.F90editmean_adv.F90editadg1_adg2_3d_luhar_pdf.F90editSkx_module.F90editpdf_closure_module.F90editsaturation.F90editsigma_sqd_w_module.F90editadvance_clubb_core_module.F90editparameters_model.F90editgrid_class.F90editmixing_length.F90editpdf_utilities.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90clip_explicit.F907435d1c799f340302393782cc58d5f7eaeb608ef1680247062000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCode changes to implement modificiations on wp3 clippings This commit contains code changes to implement modifications of skewness clippings on wp3 in src/CLUBB_core/clip_explicit.F90. The default method attempts to apply smaller (larger) clippings below (above) 100m AGL level, which can cause a discontinuities around 100m AGL level. This clippings is found to trigger sawthooth oscillations in wp3 when linear diffusion is used. Such swathooth oscillations are eleminated if a smoothed Heaviside function is introduced to obtain a smooth transition of clippings at around 100m AGL level. The changes is necessary to obtain the first order convergence in CLUBB-SCM when lienar diffusion is used. Previously committed by Shixuan. 2023-03-31 02:17:42 -05007435d1c799f340302393782cc58d5f7eaeb608efCode changes to implement modificiations on wp3 clippingseditmodel_flags.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editclip_explicit.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_helper_module.F9016fcc9ba1c2ab85f00a4d798dccf7a59cbfc718b1680538287000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit contains code changes to implement modifications on limiters in three places: 1. remove the limiters in denominator of equation for brunt_vaisala_freq_sqd_smth, which affects the computed eddy dissipation time scale in turbulent fluxes (wpxp). (in mixing_length.F90) 2. reduce the threshold values of limiters in the equation for richardson number (sqrt_Ri_zm) (in mixing_length.F90) 3. introduce the smoothed max/min function for limiters in equation of Cx_fnc_Richardson. (in advance_helper_module.F90). After the modification, we also apply a zt2m(zm2zt) smoothing on the calculated quantities. These modifications are found to be benificial for improving solution convergence in CLUBB-SCM The code changes are controlled by a newly introduced flag named "l_modify_limiters_for_cnvg_test", which is set to .false. (meaning that the modificaitons on limiters is turned off) by default. Originally committed by Shixuan. 2023-04-03 11:11:27 -050016fcc9ba1c2ab85f00a4d798dccf7a59cbfc718bThis commit contains code changes to implement modifications on limiters in three places:editadvance_clubb_core_module.F90editmixing_length.F90editclubb_api_module.F90editadvance_helper_module.F90editmodel_flags.F90components/eam/src/physics/cam/clubb_intr.F90fbb7d22afa20acd41121319a2309d6e91dd751031680550823000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for recent changes to CLUBB. 2023-04-03 14:40:23 -0500fbb7d22afa20acd41121319a2309d6e91dd75103Updated for recent changes to CLUBB.editcomponents/eam/src/physics/cam/clubb_intr.F90diffusion.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clip_explicit.F90mean_adv.F90fill_holes.F90grid_class.F90matrix_solver_wrapper.F90turbulent_adv_pdf.F90parameters_model.F90mono_flux_limiter.F90advance_helper_module.F90781ef9dfc3079f5d20cf22f044eac5970443c1b91680716686000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdvance xm wpxp gpuization (#1077) * Initial commit for GPUizing advance_xm_wpxp. * GPUizing fill_holes_vertical * Adding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2. * Small GPU fixes (#1076) * Fixing small things that I caught by adding the default(present) onto acc loops. * Moving default(present) to the end because it looks nicer there. * Adding default(present) to all acc loop statements. Also adding azt to a copyin statement, which was missed previously. All BFB. * Incemental update, not well tested yet. * Removing some copies and making the sclr_dim change. * Fixing a bug that only seemed detectable with astex_a209. We need to pass only single arrays to functions, calling ddzt( nz, ngrdcol, gr, rho_ds_zt * K_zt_nu ) was resulting in rho_ds_zt * K_zt_nu being evluated on the CPU, but the values were only valid on the GPU. So we need to evaluate that expression on the GPU, save it into an array (currently K_zt_nu_tmp), then pass that to ddzt. * GPUizing calc_turb_adv_range * GPUizing mono_flux_limiter * Cleaning up data statments and a couple other things. * Updated for some different options. * More updates needed for various options. * Reverting accidental flag change * Should be the final changes, all options tested now. * Replacing some comments in monoflux limiter, and also modifying it to make it BFB on CPUs. Also changing incorrect error conditions on tridiag. * Adding max_x_allowable to update host statement, missed previous. * Properly naming tmp variables and variables calculated from ddzt and ddzm start with ddzt_ and ddzm_. * Replacing constants with named ones from constants_clubb. * Replacing hard coded numbers in lhs variables representing the number of bands they contain with fortran parameters. 2023-04-05 12:44:46 -0500781ef9dfc3079f5d20cf22f044eac5970443c1b9Advance xm wpxp gpuization (#1077)editmean_adv.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editfill_holes.F90editadvance_clubb_core_module.F90editgrid_class.F90editmatrix_solver_wrapper.F90editadvance_helper_module.F90editclip_explicit.F90editdiffusion.F90editturbulent_adv_pdf.F90editparameters_model.F90advance_xm_wpxp_module.F904e5ef2859907a8a3e8b44fea718de72c509ae1a41680733435000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems. 2023-04-05 17:23:55 -05004e5ef2859907a8a3e8b44fea718de72c509ae1a4Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.editadvance_xm_wpxp_module.F90grid_class.F909552ab496758875cdb5dff86d47d80e2d3a7cb0f1680734063000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard. 2023-04-05 17:34:23 -05009552ab496758875cdb5dff86d47d80e2d3a7cb0fFixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.editgrid_class.F90parameters_model.F90c3bec1875abeade74fe0dd0cd38cb5361e7cac8f1680842443000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. This is what broke the clubb_openmp_gfortran_test. 2023-04-06 23:40:43 -0500c3bec1875abeade74fe0dd0cd38cb5361e7cac8fMaking it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. This is what broke the clubb_openmp_gfortran_test.editparameters_model.F90mixing_length.F90advance_clubb_core_module.F90grid_class.F90clip_explicit.F90advance_helper_module.F9040a65a54f061974152b9431e88a562d557f70dc51681924858000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLscale GPUization (#1079) * Making 2 new functions zm2zt2zm and zt2zm2zt to handle smoothing by interpolation. Replaced the spots in clubb I know that uses this to smooth things. This is just a nice to have and could allow for easy optimizations in the future by inlining the interpolations. All cases BFB on CPU and GPU, checked all relevant options too. * GPUizing diagnose_Lscale_from_tau * Removing some unused variables. * Moving acc data statements from calc_Lscale_directly up to advance_clubb_core. * Removing an unused variable. * GPUizing the l_smooth_min_max option. * GPUizing l_avg_Lscale * Changes to variable names to avoid gross long names only used once. 2023-04-19 12:20:58 -050040a65a54f061974152b9431e88a562d557f70dc5Lscale GPUization (#1079)editclip_explicit.F90editmixing_length.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editgrid_class.F90grid_class.F907094e3620ee063af2bd55a8f072cb32ce3858c4b1681926818000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.edugfortran does not like intent(out) specifiers for functions. 2023-04-19 12:53:38 -05007094e3620ee063af2bd55a8f072cb32ce3858c4bgfortran does not like intent(out) specifiers for functions.editgrid_class.F90Skx_module.F90sigma_sqd_w_module.F90advance_clubb_core_module.F90interpolation.F90calc_pressure.F90advance_helper_module.F90e12416aef4fd25ee8f843abab95e16d9a186d57e1682105140000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGPUizing Various Small Routines (#1080) * GPUizing compute_Cx_fnc_Richardson * GPUizing term_wp2_splat and term_wp3_splat * GPUizing xp3_LG_2005_ansatz * GPUizing calculate_thvm * GPUizing pvertinterp even though I don't think we care about the l_do_expldiff_rtm_thlm flag * Fixing bug. Setting l_do_expldiff_rtm_thlm causes us to use edsclrm, so we need to also ensure that edsclrm > 1 (1 because it uses a edsclr_dim-1 index) * Pushing some data statements up the call tree. 2023-04-21 14:25:40 -0500e12416aef4fd25ee8f843abab95e16d9a186d57eGPUizing Various Small Routines (#1080)editcalc_pressure.F90editadvance_clubb_core_module.F90editinterpolation.F90editSkx_module.F90editsigma_sqd_w_module.F90editadvance_helper_module.F90grid_class.F900dbf4fc79c628d0d783a67b545a14792662177a31682273667000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduThis commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797 2023-04-23 13:14:27 -05000dbf4fc79c628d0d783a67b545a14792662177a3This commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797editgrid_class.F90math_utilities.F90fb9b5e177deabcd39ce0cf36b7b1f0fd883f4af61682273667000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduThis commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797 2023-04-23 13:14:27 -0500fb9b5e177deabcd39ce0cf36b7b1f0fd883f4af6This commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797editmath_utilities.F90interpolation.F908360118ab54c355ad8a86ed330ade644c4bdcbd81682278310000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduthis is another commit that cahnges nothing that will trigger the gitUpdate scripts 2023-04-23 14:31:50 -05008360118ab54c355ad8a86ed330ade644c4bdcbd8this is another commit that cahnges nothing that will trigger the gitUpdate scriptseditinterpolation.F90clip_explicit.F90fa866723ef299b5e7c3574bb3f45f38f3fcb07f51682909659000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduadding an update that changes nothing and is just a test for the autoupdate script 2023-04-30 21:54:19 -0500fa866723ef299b5e7c3574bb3f45f38f3fcb07f5adding an update that changes nothing and is just a test for the autoupdate scripteditclip_explicit.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F90sfc_varnce_module.F90advance_helper_module.F90e7a5c0ce02567906f9003eb1b1a1cf5ca94bca4c1682952212000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMaking CLUBB's splatting scheme implicit and smoother (#1075) * Introducing rough implicit splatting scheme into CLUBB. Not yet implicit for wp3. * Implementing implicit splatting for wp3. * Further improvements to implicit splatting code, including - smoothing of the BV freq used for splatting - adding a new variable 'bv_freq_sqd_splat' to stats - add the new variable to pyplotgen standard output See PR #1075 and issue #994. * Some cleanup. * More cleanup, and adding comments. * More comments. * Updating implicit splatting scheme. * Updates to resolve PR requests. Updates associated with implicit splatting will be BIT_CHANGING. 2023-05-01 08:43:32 -0600e7a5c0ce02567906f9003eb1b1a1cf5ca94bca4cMaking CLUBB's splatting scheme implicit and smoother (#1075)editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editstats_variables.F90editstats_zm_module.F90editsfc_varnce_module.F90editadvance_helper_module.F90editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90sfc_varnce_module.F90advance_helper_module.F9008475cfca3f2571fc6342c8137f1c64d61bd68571683080989000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCalc sfc varnce GPUization (#1081) * Initial loop push for calc_sfc_varnce * BIT_CHANGING:3b086a40085284aa49c71d32c001d20153a8ddb4 the last commit is bit changing for only some cases and only when using higher than -02 optimization. uf min seems to be the first calculation that starting to differ bitwise. Using the check_multicol script confirms the differences are small. * Adding a tweak to surface values in the extra columns. This helped me check calc_sfc_varance, since we were not changing any arrays that would've affected calculations there. * Small optimization, making wstar and ustar2 scalars. * GPUizing calc_sfc_varnce * Removing conditional around some stats calls. Now we will always save sfc values to stats, because this will change stats files when gr%zm(i,1) > sfc_elevation, this is potentially BIT_CHANGING. * Merging with latest clubb changes and making work on GPUs again. This contained 2 commits that are BIT_CHANGING in some situations. 2023-05-02 21:29:49 -050008475cfca3f2571fc6342c8137f1c64d61bd6857Calc sfc varnce GPUization (#1081)editadvance_helper_module.F90editsfc_varnce_module.F90editadvance_clubb_core_module.F90advance_helper_module.F903daa3257c2033ab03757a3c5bed4d780fae457701683129413000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comReducing C_wp2_splat to 0.25 (from 2.0) for new implicit splatting code. Also fixing bug that shows up when l_brunt_vaisala_freq_moist = T. This will hopefully help to get some failing CAM tests running again. See #1074 and PR #1075 for info. This is BIT_CHANGING for all cases due to the new tunable parameter value. 2023-05-03 10:56:53 -05003daa3257c2033ab03757a3c5bed4d780fae45770Reducing C_wp2_splat to 0.25 (from 2.0) for new implicit splatting code.editadvance_helper_module.F90clip_explicit.F90a9af25eeab72b59dae5bd30bd315b35c8c78961a1683399661000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduRemoved Space From clip_explicit This is another commit that changes absolutely nothing, and only exists to test autocommit changes 2023-05-06 14:01:01 -0500a9af25eeab72b59dae5bd30bd315b35c8c78961aRemoved Space From clip_expliciteditclip_explicit.F90calendar.F90a7df38330f8cf210f542a395c8b1df60b166859b1683999525000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.edumaking changes to trigger autoudpate for test, these commits do nothing here is a body to the commit as well 2023-05-13 12:38:45 -0500a7df38330f8cf210f542a395c8b1df60b166859bmaking changes to trigger autoudpate for test, these commits do nothingeditcalendar.F90math_utilities.F90c5d25471ddb6daf201a8dc99ed95aca1b1f6091c1683999525000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.edumaking changes to trigger autoudpate for test, these commits do nothing here is a body to the commit as well 2023-05-13 12:38:45 -0500c5d25471ddb6daf201a8dc99ed95aca1b1f6091cmaking changes to trigger autoudpate for test, these commits do nothingeditmath_utilities.F90calendar.F90571c3fab16ab4f1315e272fa536064a8dc4720f01684000665000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduHere is another commit that changes nothing Here is the body 2023-05-13 12:57:45 -0500571c3fab16ab4f1315e272fa536064a8dc4720f0Here is another commit that changes nothingeditcalendar.F90math_utilities.F9010561ea5166e8f1045de302b117e2d65263323371684000665000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduHere is another commit that changes nothing Here is the body 2023-05-13 12:57:45 -050010561ea5166e8f1045de302b117e2d6526332337Here is another commit that changes nothingeditmath_utilities.F90endian.F9081f82f5ff2f9a5f7047d2c810aeff0ac5c296b431684001427000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.educhange to trigger updates this is the last batch 2023-05-13 13:10:27 -050081f82f5ff2f9a5f7047d2c810aeff0ac5c296b43change to trigger updateseditendian.F90calc_pressure.F90c2e0cf01861d6d2e292f0cc51c24a83c8ab1e7111684001497000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.educhange to calc pressure to trigger autoupdate body 2023-05-13 13:11:37 -0500c2e0cf01861d6d2e292f0cc51c24a83c8ab1e711change to calc pressure to trigger autoupdateeditcalc_pressure.F90githttp://carson.math.uwm.edu/jenkins/user/cerniktcernikthttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwmhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/pbroelspbroelsfalse77http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/77/75http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/75/BRANCHorigin/cernikt_cam_issue_147TESTe3sm_ne4_silhs_run_gfortran_testStarted by user 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change.editgrid_class.F90editclubb_api_module.F90fill_holes.F903fbfd621fd949b5528742b496e77400bc076a08d1654647552000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comReplacing use of gr with nz 2022-06-07 19:19:12 -05003fbfd621fd949b5528742b496e77400bc076a08dReplacing use of gr with nzeditfill_holes.F90latin_hypercube_driver_module.F90dfe7ab7f892dc32e5d63486c1218f36076eac9f41654647552000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comReplacing use of gr with nz 2022-06-07 19:19:12 -0500dfe7ab7f892dc32e5d63486c1218f36076eac9f4Replacing use of gr with nzeditlatin_hypercube_driver_module.F90cime_config/machines/config_compilers.xml3d5e102c0d6b6d21a2ada58b92b70325c61dff721654710810000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.eduedited config_compilers.xml nelson configuration flags to make it work on pop OS 2022-06-08 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Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/strikestrikehttp://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwmhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrnhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false70http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/70/68http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/68/BRANCHorigin/clubb_silhs_develTESTe3sm_run_gfortran_testStarted by user 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#6868false6815870FAILURE1654629349492http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/68/http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldchttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/nselkenselkehttp://carson.math.uwm.edu/jenkins/user/roessle9roessle9http://carson.math.uwm.edu/jenkins/user/pbroelspbroelshttp://carson.math.uwm.edu/jenkins/user/nchiefnchiefhttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldhttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/strikestrikehttp://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwmhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrnhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false69http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/69/67http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/67/BRANCHorigin/clubb_silhs_develTESTe3sm_run_gfortran_testStarted by user pbroelspbroelspbroels17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal577d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test7d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing54a154f40e46aadea1c285080ace7b99ca2f6610b5a154f40e46aadea1c285080ace7b99ca2f6610b5refs/remotes/origin/arm97_adda154f40e46aadea1c285080ace7b99ca2f6610b5a154f40e46aadea1c285080ace7b99ca2f6610b5refs/remotes/origin/arm97_add20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break63f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72refs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72refs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts6717d762ec52afd84081ff111eb5dc0cec7edef67417d762ec52afd84081ff111eb5dc0cec7edef674refs/remotes/origin/clubb_silhs_devel17d762ec52afd84081ff111eb5dc0cec7edef67417d762ec52afd84081ff111eb5dc0cec7edef674refs/remotes/origin/clubb_silhs_devel17d762ec52afd84081ff111eb5dc0cec7edef67417d762ec52afd84081ff111eb5dc0cec7edef674refs/remotes/origin/clubb_silhs_develhttps://github.com/larson-group/e3sm.gitfalse#67866851949700branch_e3sm_test #6767false6715868FAILURE1654628465332http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/67/stats_clubb_utilities.F902be0615c817b980139e9df1bbc39b5bd91285cfb1458850471000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:786: I fixed two tuner related problems. I made the SILHS parameters namelist optional, so that a warning message is simply printed if the namelist is not found. I'm not particularly fond of this solution, but the difficult alternative is to track down the places in the tuner where the SILHS namelist needs to be placed. Maybe some other day. I also deallocated a variable in SILHS that wasn't deallocated before. Output ought not to change. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8023 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ccef9fe7bcd6531d3a6903fbe2c6a8db763830ea 2016-03-24 20:14:31 +00002be0615c817b980139e9df1bbc39b5bd91285cfbFor clubb:ticket:786:editstats_clubb_utilities.F90lh_microphys_var_covar_module.F90a3dc0f5e2d291c1006484d2b428366db3c3883e41459194492000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:786: I added some helpful comments to `lh_microphys_var_covar_driver`, renamed `rtmc` to `rt_mc` and `thlmc` to `thl_mc`, and improved the code structure a bit. Output is bin-diff identical for two test cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8025 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 51830352a051761325ca59ae444a06f810a5925f 2016-03-28 19:48:12 +0000a3dc0f5e2d291c1006484d2b428366db3c3883e4For clubb:ticket:786:editlh_microphys_var_covar_module.F90clubb_api_module.F9076ffc1e665c4e26d1668c2efc9df9cdb5bbc142f1459894240000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782, I added all CLUBB's parameter indices to the API. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8029 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 129197ab3782d5708e97fa61b72e3e1d6bc29cdd 2016-04-05 22:10:40 +000076ffc1e665c4e26d1668c2efc9df9cdb5bbc142fFor clubb:ticket:782, I added all CLUBB's parameter indices to the API.editclubb_api_module.F90parameters_tunable.F903a6793ec01bbe473ddf6d0583c662432bbbc45071459899281000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduhelpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8030 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f1a1a51bab997a8957a9878542c03b55d2eae5ac 2016-04-05 23:34:41 +00003a6793ec01bbe473ddf6d0583c662432bbbc4507helpful noteeditparameters_tunable.F90parameters_tunable.F904d2d0eb0e397482dacaa804e257fdad814b540fc1459899376000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.edumore helpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8031 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 24e0650cb14be00b26b35e9314c0886b249a6099 2016-04-05 23:36:16 +00004d2d0eb0e397482dacaa804e257fdad814b540fcmore helpful noteeditparameters_tunable.F90parameters_tunable.F90ee33663d3cd6174fe4feefaec16f7a837f227bcb1459899640000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.edumost helpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8032 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fa7f961b7b520e654a30096415d1ba60fd4f1807 2016-04-05 23:40:40 +0000ee33663d3cd6174fe4feefaec16f7a837f227bcbmost helpful noteeditparameters_tunable.F90stats_zm_module.F90stats_zt_module.F9072529d6d77d14863829ec0b2dd173e88561e8ac71460749629000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:56: While looking through plots, I noticed that for some reason, CLUBB output files list `cloud_frac` as having units of "count", which in fact it is a fraction between 0 and 1. I have changed the units to be "-", as is done elsewhere. Note that this commit is BIT_CHANGING, but only because of the metadata change. Numerical values of all variables should be identical. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8039 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 386dd79390ff0720658e567be846b45f1267b596 2016-04-15 19:47:09 +000072529d6d77d14863829ec0b2dd173e88561e8ac7For cam:ticket:56:editstats_zm_module.F90editstats_zt_module.F90advance_clubb_core_module.F90c6500cfe559a78be80cba8e53e2fdd19ca853f3b1461627613000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduWhile working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation. This shouldn't change answers. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8051 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56c350b1b4e1bd8cbc7337c7f3d3b5d5b6a7f7b3 2016-04-25 23:40:13 +0000c6500cfe559a78be80cba8e53e2fdd19ca853f3bWhile working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation.editadvance_clubb_core_module.F90advance_helper_module.F90cb412fb54cc283d26552c72d98c21a225df26cc81461629167000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduDat crazy indentation, though... git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8052 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bbb1955eaad91f06f5fea34e40eb6ea168b7d959 2016-04-26 00:06:07 +0000cb412fb54cc283d26552c72d98c21a225df26cc8Dat crazy indentation, though...editadvance_helper_module.F90advance_helper_module.F90fb63f2634b6063fef6e6aaa7cd11a2c0175165011461698001000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`. Output is bin-diff identical for a test case. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8053 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6131eda3cc0829d2900c24ffeac3e1cfdf9196f 2016-04-26 19:13:21 +0000fb63f2634b6063fef6e6aaa7cd11a2c017516501For cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`.editadvance_helper_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F9042e5348649c5fe2849b9f3f4f75a64cee941e8421461713891000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added an option to compute `C7_Skw_fnc` based on the Richardson number. This change is wrapped in a flag, `l_use_C7_Richardson`, which is false by default. Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8056 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f545aa262b505691bcbc7a6a0dff5a6561bdb64d 2016-04-26 23:38:11 +000042e5348649c5fe2849b9f3f4f75a64cee941e842For cam:ticket:59:editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90advance_wp2_wp3_module.F90model_flags.F90185167896321573e6a27bb1994ac28aa75203fed1461880889000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am incorporating Vince's changes into the trunk. This commit introduces a new flag, `l_damp_wp2_using_em`, which, if true, will use a dissipation formula based on `em` in the `wp2` equation. The flag is false by default, and output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8066 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 39fb65cf92cbd275653e062e6e5603abc28dd1bd 2016-04-28 22:01:29 +0000185167896321573e6a27bb1994ac28aa75203fedFor cam:ticket:59:editmodel_flags.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F9029d9ce8ac3458638923b4ac461a5a569774cd6041461883559000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added a check that ensures `C1=C14` and `l_stability_correct_tau_zm=F` if `l_damp_wp2_using_em=T`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8067 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 90a2faf25065f00bda5220403e7cdb654c114f50 2016-04-28 22:45:59 +000029d9ce8ac3458638923b4ac461a5a569774cd604For cam:ticket:59:editadvance_clubb_core_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90c32284c78f7aa9070afc4f0b61bed73ccf7ccdf31461896081000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I added a new output for Richardson number. It is not added to the default output file, so output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8068 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cad331d6bd01ccc55b8b797a5f502ed45477530f 2016-04-29 02:14:41 +0000c32284c78f7aa9070afc4f0b61bed73ccf7ccdf3For cam:ticket:59, I added a new output for Richardson number.editstats_variables.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90advance_helper_module.F909d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe61461965345000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am adding an option to use a different formulation of `brunt_vaisala_frequency_sqd` in saturated air. This formula comes from Durran and Klemp (1982). As always, the change is wrapped in a flag, and output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8069 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41dcf2571aeebbf3725a54ad3c0da5e062769577 2016-04-29 21:29:05 +00009d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe6For cam:ticket:59:editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editmodel_flags.F90advance_helper_module.F909e607955d0c529d4ef6b36f9378b6d08fa21137c1461965528000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduPer cam:ticket:59#comment:21, using `T_in_K_zm` in "the formula". git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8070 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56b84fdb1a791cbe02cc4c810a8bac7f49c7704e 2016-04-29 21:32:08 +00009e607955d0c529d4ef6b36f9378b6d08fa21137cPer cam:ticket:59#comment:21, using `T_in_K_zm` in "the formula".editadvance_helper_module.F90advance_helper_module.F907682bbc205b4cd2c20021752e41e29fc76a4a8d01461966004000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59. Also, `rsat` should be `rsat_zm` where it appears in the formula, ''except'' when it appears inside of `ddzt()`. Right? git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8071 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3f69d0d4521af585b55d8462f1eaa98e180189d6 2016-04-29 21:40:04 +00007682bbc205b4cd2c20021752e41e29fc76a4a8d0For cam:ticket:59.editadvance_helper_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90f82218e2933997790453ec1d4f6990fdda8415e51462207493000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8072 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fdb08f1446b21bf3ba54158aac38d49e4d5ef7bd 2016-05-02 16:44:53 +0000f82218e2933997790453ec1d4f6990fdda8415e5For cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`.editadvance_xm_wpxp_module.F90editstats_variables.F90editstats_zm_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90c74225d16f9673c358f062b6f1e77a2c7cbd06381462231736000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8074 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8fc0610745db2bf6e686f9d315b46fc8395c1cb9 2016-05-02 23:28:56 +0000c74225d16f9673c358f062b6f1e77a2c7cbd0638For cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`.editstats_variables.F90editadvance_xm_wpxp_module.F90editstats_zm_module.F90latin_hypercube_driver_module.F90f521cb23468f0094a3fda8a7dccf8f6969bb16661462488276000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI made an error message more verbose. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8081 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2622ca3c97a4a241fa401ad1b29cb20fede97e00 2016-05-05 22:44:36 +0000f521cb23468f0094a3fda8a7dccf8f6969bb1666I made an error message more verbose.editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F9005eb072a7ebf64f5cd235377b90e41fceb6281501462488528000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduStill wanted to stop, though... git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8082 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fbee05a49431f6281a36f48f9d68b3a267a691f2 2016-05-05 22:48:48 +000005eb072a7ebf64f5cd235377b90e41fceb628150Still wanted to stop, though...editlatin_hypercube_driver_module.F90advance_xm_wpxp_module.F90604739065495ff559f032f191e99e9837e6671061462569196000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added functionality to vertically average Richardson number based on Lscale. The option is turned off by default, so output should be bin-diff identical by default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8083 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6821e86becfff5f3144b4398a27ba261903f486d 2016-05-06 21:13:16 +0000604739065495ff559f032f191e99e9837e667106For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90197f846d43da2f87e5f6f03a1862bd2ceeecc7cf1462570298000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Oops. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8084 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e452ee71e4c3a0ec7bbb1dae710efe4b1209806f 2016-05-06 21:31:38 +0000197f846d43da2f87e5f6f03a1862bd2ceeecc7cfFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_helper_module.F90193b2356409331ff90c897b93d468ed501771a771462843057000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: While reading through the code, I found an important bug in the moist Brunt-Vaisala code. Inside a `where` statement, I had calls to functions that take in an entire profile as input, such as `zt2zm` and `ddzt`. But the arguments to these functions where themselves initialized in the `where` statement! Therefore, much of the input profiles to these functions were likely uninitialized. Not good. This change affects only the case where `l_brunt_vaisala_freq_moist = T`, which is not the default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8085 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8ca078a9223a3a07a90e115f1f1d3296ea196896 2016-05-10 01:17:37 +0000193b2356409331ff90c897b93d468ed501771a77For cam:ticket:59:editadvance_helper_module.F90advance_xm_wpxp_module.F90c7d55c72919e58648dae4e5003586d21008765711463004560000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59. Refactoring: I renamed function `Richardson_num_vert_avg` to `Lscale_width_vert_avg` to make it clear it can be used for other variables. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8086 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f56b3f11144798216e670da4f77fcd1579428676 2016-05-11 22:09:20 +0000c7d55c72919e58648dae4e5003586d2100876571For cam:ticket:59.editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F900522c9f194d6b51ad08844e40e84d5099e7820fc1463018454000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I set `Richardson_num_max` to five, and enabled by default code that vertically averages `C7_Skw_fnc` over a distance of `Lscale_zm`, as this seems to be closer to what we want. This only affects results when `l_use_C7_Richardson = T`, which is not the default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8087 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 087970848c0e815d6b87a84d5d538e720ed6e95b 2016-05-12 02:00:54 +00000522c9f194d6b51ad08844e40e84d5099e7820fcFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F904f0028b1d246bd6d16b5435fc172ecb34a354fc91463018684000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduApparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement. Ref: cam:ticket:59. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8088 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d3a45797366bc238c5b19441707cc0c9f7d99883 2016-05-12 02:04:44 +00004f0028b1d246bd6d16b5435fc172ecb34a354fc9Apparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement.editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F9033af548fec392e63dabb9e2adc048c7c70c9fb861463086723000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am adding exciting support for density-weighted vertical averaging (using function `fill_holes`) in averaging `C7_Skw_fnc`. This affects output if and only if `l_use_C7_Richardson = T`, which is not default. Changes are fairly minor. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8089 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e37640c3132cadc52f0385ba3c8c3c832bccdf28 2016-05-12 20:58:43 +000033af548fec392e63dabb9e2adc048c7c70c9fb86For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90d685dd943a6c479c2997e19bb4e8726eb947042b1463089066000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Refactoring: Virtual levels!!! I am refactoring the code to make use of "virtual levels". This lays the framework to allow below-ground levels to affect the vertical averaging. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8090 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a6bdc7a8634bcac9b9caf5beb7f47313d515a0c6 2016-05-12 21:37:46 +0000d685dd943a6c479c2997e19bb4e8726eb947042bFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90c48216a85ed26f6c6f973e7e9bfad6ae6f6ff1731463093570000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I have set up the `l_use_C7_Richardson = T` code to include "virtual" vertical levels below ground in the vertical averaging of `C7_Skw_fnc`. Output shouldn't change in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8091 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 54d6826625f5e603cd3e348f3fd91c90a578ff83 2016-05-12 22:52:50 +0000c48216a85ed26f6c6f973e7e9bfad6ae6f6ff173For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90advance_windm_edsclrm_module.F900f756d77d387e7bbf34196f019648ffd855834601463518449000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: I merged NCAR's tag, !^/tags/ncar_tags/clubb_cK10_tags/clubb_cK10_n05_r8096, into the trunk. This commit mainly adds a new tuning parameter, `c_K10h`, which is related to `c_K10` but `c_K10h` is for thermodynamic levels. Keeping `c_K10 = c_K10h = 1.0` maintains current results. This commit is BIT_CHANGING, but only because a new tuning parameter was added, and apparently we are in the habit of outputting all tunable parameters in our NetCDF files. Numerically, NetCDF results should be identical. GrADS results are bin-diff identical for all (priority) cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8099 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 06bb00ff2f9e355d4115f2d3b0023e628fec704a 2016-05-17 20:54:09 +00000f756d77d387e7bbf34196f019648ffd85583460For clubb:ticket:782:editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editparameters_tunable.F90editparameter_indices.F90stats_variables.F90advance_clubb_core_module.F90stats_zm_module.F90model_flags.F90advance_xm_wpxp_module.F90advance_helper_module.F90fabce99c9f3c6239be758f17fa091f1615b44d171463527741000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am bringing in the latest and greatest features from the `diag` branch back into the trunk. The changes are enhancements to the case where `l_use_C7_Richardson = T` (not default). Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8106 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71595a55488b9463768ec15182052bbe4c767470 2016-05-17 23:29:01 +0000fabce99c9f3c6239be758f17fa091f1615b44d17For cam:ticket:59:editstats_variables.F90editmodel_flags.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editstats_zm_module.F90stats_zm_module.F90d47e9225511e6b87d16e1a95e6aaec700ef71fdd1463590697000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I had to increase `nvarmax_zm` due to new statistics being added. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8108 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 50ad45cdc9d10b94c9245b6007e09262696c43c5 2016-05-18 16:58:17 +0000d47e9225511e6b87d16e1a95e6aaec700ef71fddFor cam:ticket:59:editstats_zm_module.F90advance_xm_wpxp_module.F90cc7ff036228d237f5777ed263151c838cd0a3d1b1463604255000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I reintroduced the ability to use `turb_freq_sqd` in the denominator of `Richardson_num` as a option set to false. I suppose this is better than commented out code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8109 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4de028682e1994f0206331aba28c9b3ac14c5ab7 2016-05-18 20:44:15 +0000cc7ff036228d237f5777ed263151c838cd0a3d1bFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F902107752e392902007942d6fdf4b344f1f10bdf8e1463605180000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am introducing a new option (non-default) to vertically average clipped `Richardson_num`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8110 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f5efc2c4006252b3d5f5278dab026c7f2a8ffdd6 2016-05-18 20:59:40 +00002107752e392902007942d6fdf4b344f1f10bdf8eFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_clubb_core_module.F9097c842511dae89f61397c68fe463edda9a62d84e1463625758000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: These changes augment clubb:r8099. I confined the declaration of `RHpostPDF` in a `CLUBB_CAM` preprocessor directive to resolve a compiler warning. I also added `c_K10h` to some error_*.in files for the tuner. This resolves the failure of the nightly FIRE tuner test last night. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8111 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a3e3d9ef33520631972c02276aac7cd4df1459b8 2016-05-19 02:42:38 +000097c842511dae89f61397c68fe463edda9a62d84eFor clubb:ticket:782:editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90491b13f63db3f99e5095c89562ecf4065fc69a181463700393000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am committing parameter changes to the `l_use_C7_Richardson = T` code: * `Richardson_num_max = 200` * Vertical averaging of `Richardson_num` is enabled. * `Richardson_num` below ground is `0.5 * Richardson_num_max`. Output should be bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8112 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c4131f9f29baedbd678035f8d8aadecb08b68358 2016-05-19 23:26:33 +0000491b13f63db3f99e5095c89562ecf4065fc69a18For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F9078b1837f3871084d821505278bbb3f493870d6ed1464124838000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code: 1. The averaging levels should be within 0.5*Lscale, not Lscale. 2. The equation for the number of "below ground" levels was totally wrong. I must have been half asleep when I wrote that equation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8113 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0d38c52c98c6060f95ccb6e35be4b497ff8fff56 2016-05-24 21:20:38 +000078b1837f3871084d821505278bbb3f493870d6edFor cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90922aa61598b0b75ff0e72446efbc31737cd5b5e71464127537000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI adjusted a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8114 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: da6f1c25f65f4f89af732ac5081fe1ea932915c3 2016-05-24 22:05:37 +0000922aa61598b0b75ff0e72446efbc31737cd5b5e7I adjusted a comment.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90model_flags.F900fceb83bc012d5304422b23d42dd3b5ab083a9191464137943000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I am adding support for "pressure term 3" (pr3) in wp3's equation set. `wp3_pr3` will be included in the equation only if `l_use_wp3_pr3 = T` (default false). The magnitude of `wp3_pr3` is dependent on `C16_fnc`. Currently, `C16_fnc` is hardcoded to be 0.5. In the near future, `wp3_pr3` will instead be based on `Richardson_num`, analogously to `C7_Skw_fnc`. Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8115 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 216c85147d343dad788bd34689f333e854ffb660 2016-05-25 00:59:03 +00000fceb83bc012d5304422b23d42dd3b5ab083a919For clubb:ticket:788:editadvance_wp2_wp3_module.F90editmodel_flags.F90stats_zm_module.F9065085f8ad1cd4a0a49f60d764d36faa0d47d18691464201509000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Minor correction to units: the Skw_fnc variables should have units of "-", not "count". Of course, this commit is BIT_CHANGING because units, which are written to the NetCDF files, have been changed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8116 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7d892a1ae271bf6e3c6f8a20ff0ca2046b2b215 2016-05-25 18:38:29 +000065085f8ad1cd4a0a49f60d764d36faa0d47d1869For cam:ticket:59:editstats_zm_module.F90advance_wp2_wp3_module.F90stats_variables.F90stats_zt_module.F90f6f7a5aa8bc79938d9294f1d0d79c93f885daa481464315410000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: After a long battle, I finally got successful statistics outputting of the `wp3_pr3` term!!! Tests run: 1. Output is bin-diff if `l_use_wp3_pr3 = F` (default). 2. Output is bin-diff if `l_use_wp3_pr3 = T` and `C16_fnc(:) = 0.0`. 3. If `C16_fnc(:) = 1.0`, then the `wp3_pr3` term exactly opposes the sum of the `wp3_ta` and `wp3_tp` terms when overplotted. Furthermore, after adding `wp3_pr3` into the `wp3_residual` equation, `wp3_residual` is zero! (That is, the bu dget balances.) That code in `advance_wp2_wp3_module.F90` is pretty intricate, eh? git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8117 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 313f0faf6a0fc63ab241027943c8498096bbe599 2016-05-27 02:16:50 +0000f6f7a5aa8bc79938d9294f1d0d79c93f885daa48For clubb:ticket:788:editadvance_wp2_wp3_module.F90editstats_variables.F90editstats_zt_module.F90advance_xm_wpxp_module.F90advance_helper_module.F9011fdf543bc3a7f58254d8fbe13b5153b70823f431464625455000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Refactoring: I moved `compute_C7_Skw_fnc_Richardson` and `Lscale_width_vert_avg` to `advance_helper_module.F90`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8118 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0811835821202839f23ac52b2703a7ef1fc95472 2016-05-30 16:24:15 +000011fdf543bc3a7f58254d8fbe13b5153b70823f43For clubb:ticket:788:editadvance_xm_wpxp_module.F90editadvance_helper_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F90206f04854099eb063ed1693d2920c0c7645630c01464628703000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Refactoring: I renamed `compute_C7_Skw_fnc_Richardson` to `compute_Cx_fnc_Richardson`. I pulled out the computation of `Cx_fnc_Richardson` to `advance_clubb_core_module` and passed `Cx_fnc_Richardson` to `advance_xm_wpxp`, where it is used to set `C7_Skw_fnc`. Output is bin-diff identical for some test cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8119 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9d6955c8a6dff6139dbc4945304625a4477c0d1 2016-05-30 17:18:23 +0000206f04854099eb063ed1693d2920c0c7645630c0For clubb:ticket:788:editadvance_xm_wpxp_module.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F904e1247dd422e18086b059476e7133b703d36ac811464629432000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I am using `Cx_fnc_Richardson` to set `C16_fnc` in subroutine `advance_wp2_wp3`. This should affect output if and only if `l_use_wp3_pr3 = T` (default `F`). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8120 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 918f896b3a551678cf5c156adfd2c04000958a12 2016-05-30 17:30:32 +00004e1247dd422e18086b059476e7133b703d36ac81For clubb:ticket:788:editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_helper_module.F9043a1c71b99857c13815467fcdacd4d0cc18253f71464747298000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Damage control: I am adding lines that clip `C7_Skw_fnc` (which should now be renamed to `Cx_fnc_Richardson` in this context) to be within the range [0,1]. Apparently, on at least Intel (see build:15667), roundoff error can leave `C7_Skw_fnc` slightly outside this range. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8129 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4675048a0d54c86064366ca667174c5a403d6462 2016-06-01 02:14:58 +000043a1c71b99857c13815467fcdacd4d0cc18253f7For clubb:ticket:788:editadvance_helper_module.F90advance_helper_module.F90a962121436c1d8fe111f625513733b6e28d5c9831465496116000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduRenamed C7 to Cx in appropriate places. Ref: cam:ticket:59 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8130 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9db4228a9996907f46488ec7e6733cdf28e58ab0 2016-06-09 18:15:16 +0000a962121436c1d8fe111f625513733b6e28d5c983Renamed C7 to Cx in appropriate places.editadvance_helper_module.F90advance_helper_module.F9071e67a099e4ecd80abfd3d6e0d25acfa5c6334cb1465587760000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am effectively disabling the use of `shear_sqd` in computing `Richardson_num` in the default code. Output should be affected only in non-default code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8131 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6f10cf99569442c0bfb8b4814d6528669e5f1b00 2016-06-10 19:42:40 +000071e67a099e4ecd80abfd3d6e0d25acfa5c6334cbFor cam:ticket:59:editadvance_helper_module.F90advance_helper_module.F90d49aa6e935a68e226ab41d125afb5e1a8c68d0521465606774000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am committing various changes to the `Richardson_num` code, such as increasing the averaging width and the `Richardson_num` below-ground value. Output changes only in non-default (i.e., esoteric) configurations of CLUBB. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8132 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0fb298192f03271b416be42967f0283db679eade 2016-06-11 00:59:34 +0000d49aa6e935a68e226ab41d125afb5e1a8c68d052For cam:ticket:59:editadvance_helper_module.F90advance_helper_module.F90b5cf8ffd94155c1b1eb83dc383b8adffc62e150a1465758756000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation. I also changed `Richardson_num_max` to 400. This commit will affect CLUBB output only in non-default configurations. Ref: cam:ticket:61. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8133 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e9cf12eca6b97bf81881796ef7f1ebcde68a4e7 2016-06-12 19:12:36 +0000b5cf8ffd94155c1b1eb83dc383b8adffc62e150aI made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation.editadvance_helper_module.F90parameters_silhs.F90silhs_importance_sample_module.F906169ec78b702433711f504bb5a8f86e6b1c780fb1467839790000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:790: I am adding an option to SILHS to normalize sample point weights so that they add up to num_samples. The option is turned off by default (for now) so output shouldn't change yet. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8165 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fb10c1cf97430afeae868e59d88b32c007a30849 2016-07-06 21:16:30 +00006169ec78b702433711f504bb5a8f86e6b1c780fbFor clubb:ticket:790:editsilhs_importance_sample_module.F90editparameters_silhs.F90parameters_silhs.F90fdd301bb825931e9313c6f69ac022c0d0cb091dd1467840040000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI am setting `l_lh_normalize_weights=T` by default in both the source code and the namelist. This commit is BIT_CHANGING: it will change answers in all cases that use SILHS. Ref: clubb:ticket:790 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8168 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a222c9ffd940a67e0759d99c707df0abc7cfe692 2016-07-06 21:20:40 +0000fdd301bb825931e9313c6f69ac022c0d0cb091ddI am setting `l_lh_normalize_weights=T` by default in both the source code and the namelist.editparameters_silhs.F90silhs_importance_sample_module.F9011d19bb017414c12230547489ab559001398846b1467841114000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduIt is more robust to check the average of the sample point weights rather than the sum of the sample point weights for unity-ness. For clubb:ticket:790. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8171 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bc95e82e4c03358f4f5797b7b527ee03c3ea8f55 2016-07-06 21:38:34 +000011d19bb017414c12230547489ab559001398846bIt is more robust to check the average of the sample point weights rather than the sum of the sample point weights for unity-ness.editsilhs_importance_sample_module.F90mixing_length.F90be1c3106832fe19595c6446e12a254d55b452fc11467930965000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:67: I refactored the computation of rsatl_par_j into a function. Output is bin-diff identical. In the future, this function will do many exciting things. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8180 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6939bd1b43cee733a2028da7bbb654f5427a106f 2016-07-07 22:36:05 +0000be1c3106832fe19595c6446e12a254d55b452fc1For cam:ticket:67:editmixing_length.F90mixing_length.F909241d3160bc3f08cea06a367363bac429b0a48011467933236000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:67: I added the ability to use ice in the computation of rsatl_par. This is wrapped in a flag, `l_include_ice`, which is F by default, keeping output bin-diff. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8182 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f69754e5f7c966f12ce435d22662adcb41959f50 2016-07-07 23:13:56 +00009241d3160bc3f08cea06a367363bac429b0a4801For cam:ticket:67:editmixing_length.F90mixing_length.F90a65a2716e9a84c14d8ce00274c7d8ceb64cec15b1467934375000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduCode improvements. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8183 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 784a92ac88af2f4b23ccd2a75d95f6044beef1d5 2016-07-07 23:32:55 +0000a65a2716e9a84c14d8ce00274c7d8ceb64cec15bCode improvements.editmixing_length.F90mixing_length.F901241c9306c125114c5e2cf74fa5ddf3c0c575ce21467935024000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduVince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more! For cam:ticket:67. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8185 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1a2d64da0eaa23681153f9377c943ba076f6f7d9 2016-07-07 23:43:44 +00001241c9306c125114c5e2cf74fa5ddf3c0c575ce2Vince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more!editmixing_length.F90setup_clubb_pdf_params.F90bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bb1468432966000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8195 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4bfa90e34669bb3e6b15b9b4307a62567624763a 2016-07-13 18:02:46 +0000bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bbFor cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used.editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90aa8a3d9da135f520be59cdf4a39b6835519350ab1468433903000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFixed a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8196 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8551b37c3d21f0eefe0678cb265e12d0d7546021 2016-07-13 18:18:23 +0000aa8a3d9da135f520be59cdf4a39b6835519350abFixed a comment.editsetup_clubb_pdf_params.F90advance_wp2_wp3_module.F904457ce79704986f96788b965685a759a6a14654d1468627919000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I made sure `wp3_pr3_rhs` was initialized when `l_use_wp3_pr3 = F`, so that zero is output to stats, rather than an uninitialized variable. This should resolve the failures of the Nightly Uninitialized Variables Test (build:15959) and the Nightly OpenMP Test (build:15953) last night. This commit is BIT_CHANGING because a variable which was output as uninitialized (usually NaN) before is now output as zero. However, answers remain unchanged as long as `l_use_wp3_pr3 = F`. It is worth noting that clubb:r8198 also caused the Nightly Bin Diff Regression Test (build:15948) to fail because it added a stats output and was not marked with a BIT_CHANGING tag. Including the tag in this commit will resolve that failure, and we should see a lovely shade of spring green tomorrow morning. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8199 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 88ee4f1f9682fbaf959972a78008162165f1b04f 2016-07-16 00:11:59 +00004457ce79704986f96788b965685a759a6a14654dFor clubb:ticket:788:editadvance_wp2_wp3_module.F90model_flags.F90942ecdc6d4c071de7a24f6eb24c549ec417eddb41468876031000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I changed some CLUBB parameters: {{{ l_vert_avg_closure = .false. l_trapezoidal_rule_zt = .false. l_trapezoidal_rule_zm = .false. l_call_pdf_closure_twice = .false. l_use_cloud_cover = .false. }}} This commit is BIT_CHANGING: answers will be changed in all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8200 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b469e885afa1be9b6055abc2a7d52ae6fe7d8fe 2016-07-18 21:07:11 +0000942ecdc6d4c071de7a24f6eb24c549ec417eddb4For clubb:ticket:792:editmodel_flags.F90advance_clubb_core_module.F90842f4771aae526e1c2614eecca67aa77b12ac1ce1468888712000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I initialized some variables that were before uninitialized when `l_vert_avg_closure = F`. These uninitialized variables were used only for stats. This commit is BIT_CHANGING in the "_zm" output file because some variables, such as `cloud_frac_zm`, that were output as undefined before are now output as zero. However, the simulation result does not change as a result of this commit. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8201 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 21ad814bfcfd439dd5faf226745d30aad397a9f7 2016-07-19 00:38:32 +0000842f4771aae526e1c2614eecca67aa77b12ac1ceFor clubb:ticket:792:editadvance_clubb_core_module.F90advance_clubb_core_module.F905097bb3b46bc376688d970c63fcfc2b2dbe81ea51468951858000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792, I added more initializations for uninitialized variables. This commit is probably BIT_CHANGING, because output variables that were uninitialized are now output as zero. With this commit, CLUBB runs to completion with the Oracle compiler, resolving build:15997. Hopefully the OpenMP test (build:15991) will follow suit. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8202 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e37f06af1cecae4ccd91298942c3fc3c9bb3780f 2016-07-19 18:10:58 +00005097bb3b46bc376688d970c63fcfc2b2dbe81ea5For clubb:ticket:792, I added more initializations for uninitialized variables.editadvance_clubb_core_module.F90advance_clubb_core_module.F90afa64ca95f3398b1df10f9d3159711a052d12a6b1468957085000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen l_avg_Lscale is turned on but the plume-centered calculation is disabled, I changed the "sample points" chosen to pick the theta-l point associated with the rt point based on the sign of rtpthlp. Since the l_avg_Lscale flag is turned off my default, the results found in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8203 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a98b05fd3e2d332d890fbdf8130ed339f2238b09 2016-07-19 19:38:05 +0000afa64ca95f3398b1df10f9d3159711a052d12a6bWhen l_avg_Lscale is turned on but the plume-centered calculation is disabled,editadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90output_grads.F90eb0be9200bae51409573b16aaab4d408214770031468966137000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I removed the `CLUBB_CAM` preprocessor directive surrounding the RH_postPDF fix, and instead added a new flag, `l_rcm_supersat_adj`, set to false by default. This changeset produces bin-diff identical output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8204 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d2869a87f94e19e634e8eaaf6ca296f21994506f 2016-07-19 22:08:57 +0000eb0be9200bae51409573b16aaab4d40821477003For clubb:ticket:792:editoutput_grads.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F90stats_variables.F90stats_zt_module.F903137b73c6c8a14a6eec8eee3cf7c53ae38420b2e1468967755000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8205 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c399236ebfe9a2691198f3f87952e0a757833a2e 2016-07-19 22:35:55 +00003137b73c6c8a14a6eec8eee3cf7c53ae38420b2eFor clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output.editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editstats_variables.F90editstats_zt_module.F90advance_clubb_core_module.F90f61e9048127a441fc4fce451ecf7a25f4a3eb9c51468971135000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI renamed RH_postPDF to rel_humidity. For clubb:ticket:792. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8206 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3a4c87b8438e6b3bd9404e5b16a5fb09d05e391 2016-07-19 23:32:15 +0000f61e9048127a441fc4fce451ecf7a25f4a3eb9c5I renamed RH_postPDF to rel_humidity.editadvance_clubb_core_module.F90advance_clubb_core_module.F902b9c0abf5f05672f14e2ffc9c479ec51c03eb1871468977586000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`. This commit doesn't change output by default, because `l_rcm_supersat_adj = F`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8207 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 424d83775df122fb2114c6dc7a3276a63690a881 2016-07-20 01:19:46 +00002b9c0abf5f05672f14e2ffc9c479ec51c03eb187For clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`.editadvance_clubb_core_module.F90advance_clubb_core_module.F90b5e36c5cc98bee2a71b6e1aac647ef04740481ca1468977936000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8208 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3aef1ca27eb0b5ce179c9910fe52cea575dbb33 2016-07-20 01:25:36 +0000b5e36c5cc98bee2a71b6e1aac647ef04740481caFor clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason.editadvance_clubb_core_module.F90model_flags.F90f0c489f1ec91fede9e93674f5ad8da5adcc72ff21468978272000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist. This commit is BIT_CHANGING. For most cases, results do not change because `l_vert_avg_closure = F`. However, at least twp_ice changes slightly. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8209 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6bc9207fc8f2130454a06cbca7fbcffe4860805 2016-07-20 01:31:12 +0000f0c489f1ec91fede9e93674f5ad8da5adcc72ff2For clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist.editmodel_flags.F90advance_clubb_core_module.F9085557a043ebf71d33df4cb766e602ecc4a5073461468979135000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduAs requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed. For clubb:ticket:792. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8210 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a2c8d6b5c2bfd632c12e47335b95d5fba6e9dc1a 2016-07-20 01:45:35 +000085557a043ebf71d33df4cb766e602ecc4a507346As requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed.editadvance_clubb_core_module.F90advance_clubb_core_module.F905a524a2d05c67e5b0eba255e0804760871ccbca61468979203000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduComment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8211 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d58325cd8606f6c4461777a20d0d1b0c3f13a68d 2016-07-20 01:46:43 +00005a524a2d05c67e5b0eba255e0804760871ccbca6Comment.editadvance_clubb_core_module.F90stats_variables.F90421941ece8fe45eff7e5382bf99596c2c681e5271469028463000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8212 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41002aa1be883eea7f5cee997cf5384d81c4a333 2016-07-20 15:27:43 +0000421941ece8fe45eff7e5382bf99596c2c681e527For clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010).editstats_variables.F90output_grads.F903cd78611e048d03e25589bae4bd6d754156d9a991469031826000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI removed a spurious print statement. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8216 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d0b98149fb8261c773b77d91b7feada06c134e41 2016-07-20 16:23:46 +00003cd78611e048d03e25589bae4bd6d754156d9a99I removed a spurious print statement.editoutput_grads.F90advance_wp2_wp3_module.F90parameters_tunable.F90model_flags.F90parameter_indices.F90surface_varnce_module.F90clubb_api_module.F90e20752ab491ab93d8c23011bad3f73e6c914a7c91469126912000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:73: To facilitate committing tuning changes to CAM, I added a new tuning parameter, `up2_vp2_factor`, and a new flag, `l_use_C11_Richardson`. I made various other changes. Output is bin-diff identical for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8220 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: adaa047dde0e71089e9f336095fa038de4fb2a6d 2016-07-21 18:48:32 +0000e20752ab491ab93d8c23011bad3f73e6c914a7c9For cam:ticket:73:editparameters_tunable.F90editsurface_varnce_module.F90editmodel_flags.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90editparameter_indices.F90sponge_layer_damping.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90644805cc11020c09f7f7341fac1620b7cdb6200e1470267879000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am beginning to generalize the sponge damping code so that it can be applied to fields such as wp2, up2, and vp2. As part of this change, I am reverting the interpolation of sponge damping time scale, tau_sponge_damp, from linear interpolation to the kind of interpolation that is used in SAM LES. Since the CGILS cases use sponge damping for mean fields toward the top of the domain, the results of this change will be BIT_CHANGING. However, the effect is minor. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8228 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23464bb22b7d8a9ce22bd69c0495c047bb5cc36c 2016-08-03 23:44:39 +0000644805cc11020c09f7f7341fac1620b7cdb6200eI am beginning to generalize the sponge damping code so that it can be applied toeditsponge_layer_damping.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90stats_zm_module.F90stats_variables.F90sponge_layer_damping.F90stats_zt_module.F900c83ceeaa0aa916808a262473b8df43bb02fdfb31470353741000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added all the coding infrastructure to perform sponge damping (and record its effects on the budgets) for wp2, wp3, up2, and vp2. This code is turned off by default. Additionally, I haven't added the stats to stats.in files yet. As a result, the results found in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. Larson Group Internal Trac System Reference: papers:ticket:14. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8229 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: abe95893a6e5716d55769a9090c78f29be20d886 2016-08-04 23:35:41 +00000c83ceeaa0aa916808a262473b8df43bb02fdfb3I have added all the coding infrastructure to perform sponge damping (and recordeditstats_zt_module.F90editadvance_xp2_xpyp_module.F90editstats_zm_module.F90editsponge_layer_damping.F90editadvance_wp2_wp3_module.F90editstats_variables.F90index_mapping.F90bde6e65ded8cec97c1df34c94091e882b55408e41475159422000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added comments about the two sets of indices in CLUBB, the ii indices and the iiPDF indices. These are used to index the hydrometeors and PDF variates, respectively. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8255 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9657730a0639973c1006be330637e3d9fcc56150 2016-09-29 14:30:22 +0000bde6e65ded8cec97c1df34c94091e882b55408e4editindex_mapping.F90stats_variables.F90stats_lh_sfc_module.F90b6c2764136da24f7734273fe582d1021db667c101476799815000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:796 I added the sum and the average of the sample point weights to the lh surface output. The variables are called lh_sample_weights_sum and lh_sample_weights_avg and will be written with the standard_stats output configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8261 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 367b148899348e1a912288af135c165818fab7e9 2016-10-18 14:10:15 +0000b6c2764136da24f7734273fe582d1021db667c10clubb:ticket:796editstats_variables.F90editstats_lh_sfc_module.F90latin_hypercube_driver_module.F906e539c8461bba161899a33c9ac6d09a6bd5b92071476799815000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:796 I added the sum and the average of the sample point weights to the lh surface output. The variables are called lh_sample_weights_sum and lh_sample_weights_avg and will be written with the standard_stats output configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8261 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 367b148899348e1a912288af135c165818fab7e9 2016-10-18 14:10:15 +00006e539c8461bba161899a33c9ac6d09a6bd5b9207clubb:ticket:796editlatin_hypercube_driver_module.F90parameters_tunable.F90a3ffb88e1500efe97673ee2d43487617c0a0ff241476822775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some parameter value checking in subroutine setup_parameters. When l_clip_semi_implicit is set to .false. (which it is by default), the new code enforces C6rt = C6thl, C6rtb = C6thlb, C6rtc = C6thlc, and C6rt_Lscale0 = C6thl_Lscale0. This will prevent an inconsistent calculation of wpthlp_pr1 in this scenario, while preventing the user from thinking that the C6thl set of parameters do anything in this scenario. Larson Group Internal Trac System Reference: clubb:ticket:794. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8262 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bf2c9cc9ecbd57d0b8023e100f1d73156d055b65 2016-10-18 20:32:55 +0000a3ffb88e1500efe97673ee2d43487617c0a0ff24I added some parameter value checking in subroutine setup_parameters.editparameters_tunable.F90silhs_api_module.F90lh_microphys_var_covar_module.F90e71b63c797a2f56b4dfb532421ea6062ad0890531477081977000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:796 The subroutine lh_microphys_var_covar_driver calculates covariances of rt, thl, and w. This calculation requires mean values of the variables, which were calculated with compute_sample_mean() and the drawn sample points. However, the actual mean values of the PDFs are known by CLUBB and stored in pdf_params. With this commit we change the calculation so that the known means are used to improve the accuracy and reduce noise. Small changes to the SILHS API have been made, since the pdf_params variable was added to the parameter list of lh_microphys_var_covar_driver(). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8263 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c2f888a936850200bf6a42c1efa7518d74a65685 2016-10-21 20:32:57 +0000e71b63c797a2f56b4dfb532421ea6062ad089053clubb:ticket:796editsilhs_api_module.F90editlh_microphys_var_covar_module.F90advance_clubb_core_module.F90c0f71070adf163ea058fe79592c6d476aadc2aa61480576433000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI finally have a standalone version of the new subroutine, generate_pdf_params, that compiles. It is not currently called from any point in the code. Just getting this ready has been an accomplishment. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8281 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8d6c7c4529e72e216b9de62b7dfe2aedf44f438 2016-12-01 07:13:53 +0000c0f71070adf163ea058fe79592c6d476aadc2aa6I finally have a standalone version of the new subroutine, generate_pdf_params,editadvance_clubb_core_module.F90advance_clubb_core_module.F90f5ee4a59559816b441a43d16faeb8b458ea8065a1480577925000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSome code within advance_clubb_core that is found within CAM_CLUBB preprocessor flags requests rcp2_zt and thlprcp as output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8282 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 198ec6e782719c2321a23acf48820ea841761e1c 2016-12-01 07:38:45 +0000f5ee4a59559816b441a43d16faeb8b458ea8065aSome code within advance_clubb_core that is found within CAM_CLUBB preprocessoreditadvance_clubb_core_module.F90advance_clubb_core_module.F9033092de95e77d84d9857adebcf870b293cb613cd1480581434000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz to be output from generate_pdf_params, and the stats_accumulate code requires that rcm_supersat_adj is output as well. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8283 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1cb9f8be3845cc6a7aa6cf3c372cdf9491c02d19 2016-12-01 08:37:14 +000033092de95e77d84d9857adebcf870b293cb613cdThe perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz toeditadvance_clubb_core_module.F90advance_clubb_core_module.F90617c5f2a850ab442bd934af221554ae218fcccbb1480581973000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a missing intent(out) statement. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8284 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b5482df6be9a1bf3edac10c606dfb183ca5c6cd6 2016-12-01 08:46:13 +0000617c5f2a850ab442bd934af221554ae218fcccbbI added a missing intent(out) statement.editadvance_clubb_core_module.F90advance_clubb_core_module.F907cc27e32c42a7c9441b678648e3aa91f8280d0381480615444000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have interfaced the new subroutine containing all of the PDF closure-related stuff with the code. When the subroutine call is made from the location of the code it is replacing, the results in GrADS output files from the new revision are an exact match to the results in GrADS output files from the previous revision for all cases using CLUBB's default configuration. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8285 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ce07a9d5a621c43d084c67071fa3f694be010651 2016-12-01 18:04:04 +00007cc27e32c42a7c9441b678648e3aa91f8280d038I have interfaced the new subroutine containing all of the PDF closure-relatededitadvance_clubb_core_module.F90advance_clubb_core_module.F901cece97462a9a5d534b5130012ed38d5b9e23d661480616963000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of some variables that were brought into advance_clubb_core by use statements that are no longer necessary. This eliminates new compiler warnings. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8286 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 48e38f266be67c2ef7af997b682505434d7541c3 2016-12-01 18:29:23 +00001cece97462a9a5d534b5130012ed38d5b9e23d66I got rid of some variables that were brought into advance_clubb_core by use statementseditadvance_clubb_core_module.F90advance_clubb_core_module.F9074d4f7f23ddc2d22d680a6c63cd3fedd86ab83f91480617705000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI cleaned up more compiler warnings for unused variables. The warnings came from g95. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8287 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ae7227875369b954d7e996e6ba845fb0cf8e6fdb 2016-12-01 18:41:45 +000074d4f7f23ddc2d22d680a6c63cd3fedd86ab83f9I cleaned up more compiler warnings for unused variables. The warnings came from g95.editadvance_clubb_core_module.F90advance_clubb_core_module.F9065844eccfd6e78d303f9e2b529eabf24f0e95fd61480696738000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a second call to subroutine generate_pdf_params. This one occurs after predictive fields have been advanced. I have also added code to call generate_pdf_params at its original location, at the new location, or at both locations. The appropriate anti-idiot code is currently located in advance_clubb_core, but will be moved in the future. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8288 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: da44da508e6af8609aa44a634f1a8a8ecfef9fd5 2016-12-02 16:38:58 +000065844eccfd6e78d303f9e2b529eabf24f0e95fd6I have added a second call to subroutine generate_pdf_params. This one occurseditadvance_clubb_core_module.F90advance_clubb_core_module.F90652b8ad1bd732665a1c5e813186c434fe84ef4f41480701998000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the setting of qclvar and thlprcp_out to after the second call to subroutine generate_pdf_params. This way, rcp2_zt and thlprcp don't need to be passed in and out of subroutine advance_clubb_core. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8289 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b0697278dc51c875d2131da2dd818c6566983029 2016-12-02 18:06:38 +0000652b8ad1bd732665a1c5e813186c434fe84ef4f4I moved the setting of qclvar and thlprcp_out to after the second call toeditadvance_clubb_core_module.F90advance_clubb_core_module.F90f2b2a33f8d2799df9309411d6a38c945f6e0d69d1480704149000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have declared the l_use_ice_latent option and the l_call_pdf_closure_twice option to be imcompatible with the ipdf_post_advance_fields option. This prevents seldom-used variables, such as rtm_frz, thlm_prz, pdf_params_frz, and pdf_params_zm, from having to be passed in and out of subroutine advance_clubb_core when the PDF is only called after predictive fields have been advanced. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8290 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fd1cf79fe8112f1d96b0e8eb56b700190daef28 2016-12-02 18:42:29 +0000f2b2a33f8d2799df9309411d6a38c945f6e0d69dI have declared the l_use_ice_latent option and the l_call_pdf_closure_twiceeditadvance_clubb_core_module.F90advance_clubb_core_module.F9066ed30caf14d248db6cf1fcdf4f13abb1a2ec0531480705448000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a local cslculation of sigma_sqd_w near the top of subroutine advance_clubb_core in a scenario when the PDF is not called until after the advancement of the predictive fields (in other words, when ipdf_post_advance_fields is selected). Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8291 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b8c687375bd2a3ba9f8f113597ee02e6a66b440b 2016-12-02 19:04:08 +000066ed30caf14d248db6cf1fcdf4f13abb1a2ec053I added a local cslculation of sigma_sqd_w near the top of subroutineeditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F905d635a9256509ec7a5a327a323966cc64f5c58a41480710048000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the inputs and outputs of subroutine advance_clubb_core so that rcm, cloud_frac, wpthvp, wp2thvp, rtpthvp, thlpthvp, sclrpthvp, and pdf_params are all passed through as intent(inout) variables. This change allows for CLUBB's PDF to be called after the predictive fields are advanced when the appropriate option is set. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. The default option is still to call CLUBB's PDF in its historical location, which is prior to the advancement of the predictive fields. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8293 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e49c5e8030cb7838d4a1582f3a6c2aa3ee93f05 2016-12-02 20:20:48 +00005d635a9256509ec7a5a327a323966cc64f5c58a4I am changing the inputs and outputs of subroutine advance_clubb_core so thateditadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F90090114c800f5dbd574978c07c4d5558ca86c69ee1480785769000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code so that stats that are internal to subroutine generate_pdf_params are only called once every model timestep when the ipdf_pre_post_advance_fields option, which calls the aforementioned subroutine twice, is called. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8294 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1b25e9166559c4323fc8182969a948e9397c9c39 2016-12-03 17:22:49 +0000090114c800f5dbd574978c07c4d5558ca86c69eeI added code so that stats that are internal to subroutine generate_pdf_paramseditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90582c3bf747b2fa69443e8f75e18dae7c861ecb4c1481662775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated subroutine advance_clubb_core so that pdf_params_zm is now passed into and out of it as an intent(inout) variables. This enables it to be preserved from timestep to timestep. This also removes the flag l_call_pdf_closure_twice from being blacklisted when ipdf_post_advance_fields is used as the ipdf_call_placement option. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision of this branch for all cases (with the default configuration of ipdf_call_placement = ipdf_pre_advance_fields). Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8314 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7326a7a09d64f47ad1738b2f42b3752f9ccc1bcf 2016-12-13 20:59:35 +0000582c3bf747b2fa69443e8f75e18dae7c861ecb4cI have updated subroutine advance_clubb_core so that pdf_params_zm is now passededitadvance_clubb_core_module.F90editclubb_api_module.F90index_mapping.F90diagnose_correlations_module.F90setup_clubb_pdf_params.F90array_index.F90clubb_api_module.F90corr_varnce_module.F90cdaeea61eda638c5b85824407830ec4b16a5abe51484122852000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8339 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: eebc4d9c6aec2d6a54b9769d4dbac2a14ee20c8f 2017-01-11 08:20:52 +0000cdaeea61eda638c5b85824407830ec4b16a5abe5Ticket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identicaleditindex_mapping.F90editdiagnose_correlations_module.F90editcorr_varnce_module.F90editarray_index.F90editclubb_api_module.F90editsetup_clubb_pdf_params.F90transform_to_pdf_module.F90silhs_importance_sample_module.F90latin_hypercube_driver_module.F90586355222c1c41305aafd6c519115915e1eafe411484122852000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8339 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: eebc4d9c6aec2d6a54b9769d4dbac2a14ee20c8f 2017-01-11 08:20:52 +0000586355222c1c41305aafd6c519115915e1eafe41Ticket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identicaledittransform_to_pdf_module.F90editsilhs_importance_sample_module.F90editlatin_hypercube_driver_module.F90diagnose_correlations_module.F90index_mapping.F90setup_clubb_pdf_params.F90clubb_api_module.F90matrix_operations.F90corr_varnce_module.F902d21676fa45bca8e71ae19a0844aba77789b41271484287146000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8341 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 94b0bd96aa64476c342b0fa90bbf9c28df1fb468 2017-01-13 05:59:06 +00002d21676fa45bca8e71ae19a0844aba77789b4127Ticket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identicaleditsetup_clubb_pdf_params.F90editclubb_api_module.F90editdiagnose_correlations_module.F90editmatrix_operations.F90editcorr_varnce_module.F90editindex_mapping.F90silhs_api_module.F90silhs_importance_sample_module.F90generate_uniform_sample_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90est_kessler_microphys_module.F90output_2D_samples_module.F90b5ac7cc9c742a41cd4463e754d2c701131e773ab1484287146000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8341 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 94b0bd96aa64476c342b0fa90bbf9c28df1fb468 2017-01-13 05:59:06 +0000b5ac7cc9c742a41cd4463e754d2c701131e773abTicket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identicaleditsilhs_importance_sample_module.F90editgenerate_uniform_sample_module.F90editsilhs_api_module.F90editoutput_2D_samples_module.F90edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90editest_kessler_microphys_module.F90advance_clubb_core_module.F90729952dc7d1cce36a1243a7968fc10b1f9d5e4821484944004000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added a blank line, which will not change answers. However, it will test if the AUTO_COMMIT feature is still working after other:r537. For other:ticket:439. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8346 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b9caa5a3e8936342fc662afee698c65f32fe02cb 2017-01-20 20:26:44 +0000729952dc7d1cce36a1243a7968fc10b1f9d5e482editadvance_clubb_core_module.F90advance_clubb_core_module.F90129209e51573452d8eef3328cff95a1aa34db1e91485187160000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added a blank line merely to trigger the AUTO_COMMIT updater. It won't change answers. For other:ticket:439. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8347 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 15a16bb6e0e12fb0b4afa9e1f386936a471d7f93 2017-01-23 15:59:20 +0000129209e51573452d8eef3328cff95a1aa34db1e9editadvance_clubb_core_module.F90pdf_parameter_module.F90f613fb4ce5602b4624d4637df30dd3069057a94c1485383631000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new subroutine, init_pdf_params, to pdf_parameter_module.F90. This allows for an easier way of initializing variables of type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8348 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0411cc2ab856908a8153bc51bdcdc93638767e24 2017-01-25 22:33:51 +0000f613fb4ce5602b4624d4637df30dd3069057a94cI added a new subroutine, init_pdf_params, to pdf_parameter_module.F90.editpdf_parameter_module.F90pdf_parameter_module.F90setup_clubb_pdf_params.F90baeba5205aa0fdde1c16c1d735011a9d6eeb96fd1485385275000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90 as subroutine pack_hydromet_pdf_params. I took out the ifdef CLUBB_CAM preprocessor flags around some declarations and subroutines in pdf_parameter_module.F90 because they are also going to be called by WRF-CLUBB (and possibly SAM-CLUBB). The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8349 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7fe6b09e563382cdf65378edd286fa3d6b9c7c9 2017-01-25 23:01:15 +0000baeba5205aa0fdde1c16c1d735011a9d6eeb96fdI renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90editsetup_clubb_pdf_params.F90editpdf_parameter_module.F90variables_diagnostic_module.F90variables_prognostic_module.F9092d57479e3f56b93ba46a1773be93ab46078b8b81485386473000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am now using the new subroutine init_pdf_params to initialize the values of the PDF parameters of type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8350 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 24899b7617ce4e89fd6ba4406625230c9f18dfbb 2017-01-25 23:21:13 +000092d57479e3f56b93ba46a1773be93ab46078b8b8I am now using the new subroutine init_pdf_params to initialize theeditvariables_diagnostic_module.F90editvariables_prognostic_module.F90clubb_api_module.F90149845b7ef749677b049d594d2e87e8fd4e0ce921485387548000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api, unpack_pdf_params_api, and num_pdf_params so that they can be accessed from WRF-CLUBB. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8351 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 749c0e32563c60a53b924f1ff350fbc0e82e03e3 2017-01-25 23:39:08 +0000149845b7ef749677b049d594d2e87e8fd4e0ce92I removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api,editclubb_api_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90matrix_operations.F900e6ad4f7bd68117de009609e955a67219d3966551486693085000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.educlubb:ticket:800 -- Changed fatal errors statements to debug level 0. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8355 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 842caa8112d9655db44e72c6906c8b6efd4e60fe 2017-02-10 02:18:05 +00000e6ad4f7bd68117de009609e955a67219d396655clubb:ticket:800 -- Changed fatal errors statements to debug level 0.editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editmatrix_operations.F90editpdf_closure_module.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editmixing_length.F90latin_hypercube_driver_module.F904a974e672ff4636c1840cc5276a9a32cb9963a271486693085000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.educlubb:ticket:800 -- Changed fatal errors statements to debug level 0. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8355 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 842caa8112d9655db44e72c6906c8b6efd4e60fe 2017-02-10 02:18:05 +00004a974e672ff4636c1840cc5276a9a32cb9963a27clubb:ticket:800 -- Changed fatal errors statements to debug level 0.editlatin_hypercube_driver_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F908907a3787230cb9be6c3fea6254676a199330a131487706416000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvp are passed into subroutine stats_accumulate rather than be brought in by USE statements. This will allow these variables to be output correctly in the CLUBB stats grid column in WRF-CLUBB runs. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8361 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b7dbabdfea13cf54aa5d8f089ccbc780be0ddd1d 2017-02-21 19:46:56 +00008907a3787230cb9be6c3fea6254676a199330a13I updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvpeditstats_clubb_utilities.F90editadvance_clubb_core_module.F90stats_clubb_utilities.F90stats_variables.F90stats_zm_module.F90advance_clubb_core_module.F90cf19b99a6421ab461a8aba9db5cffe0045a2c8c21487877183000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the coding infrastructure to output additional statistics w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm. These are necessary for CLUBB restarts if the ipdf_call_placement flag is set to ipdf_post_advance_fields and the l_call_pdf_closure_twice flag is turned on. Additionally, I have added all the necessary CLUBB fields to input fields and to CLUBB restarts so that restarts should be successful if the ipdf_call_placement flag is set to ipdf_post_advance_fields. I have not added the new stats to the stats.in files yet. With that, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8362 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4289d2475f8d595b9e6dc2bb91286da307b49241 2017-02-23 19:13:03 +0000cf19b99a6421ab461a8aba9db5cffe0045a2c8c2I have added the coding infrastructure to output additional statisticseditstats_clubb_utilities.F90editstats_variables.F90editstats_zm_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90797509049869e44636489bd02d8d7359dd85ed0d1488057545000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a bug fix for the Sun compiler. The variables pdf_params_zm and pdf_params_frz, which aren't used with CLUBB's current default settings, are intent(out) of subroutine generate_pdf_params. While they are initialized in CLUBB, they were not initialized in subroutine generate_pdf_params, and since they weren't being used by default, NaN values were being passed out of generate_pdf_params, overwriting the 0 values that they had been initialized to. This bug fix initializes pdf_params_zm and pdf_params_frz locally within subroutine generate_pdf_params. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8366 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dff11a1927e522b0c5ff0acb47da029ee6750ed5 2017-02-25 21:19:05 +0000797509049869e44636489bd02d8d7359dd85ed0dThis is a bug fix for the Sun compiler. The variables pdf_params_zm andeditadvance_clubb_core_module.F90setup_clubb_pdf_params.F90da1e6e93f57c3b5937ce93743d13f2c8698fafe81488089851000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the hydrometeor PDF code to set mu_hm_1 and mu_hm_2 based on mu_thl_1 and mu_thl_2. This will help improve the increase of thlp2 from evaporation of rain near ground in cases that use analytic microphysics or SILHS. The results of this change are BIT_CHANGING for all cases that use any type of microphysics. Larson Group Internal Trac System Reference: papers:ticket:14. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8368 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ec62851ec33aa701989b4a4cac6dee344a642277 2017-02-26 06:17:31 +0000da1e6e93f57c3b5937ce93743d13f2c8698fafe8I am updating the hydrometeor PDF code to set mu_hm_1 andeditsetup_clubb_pdf_params.F90advance_clubb_core_module.F902849e9ec8d8be6daa3f5c9db5f17bf33290447f61488347866000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRunning the Bitten tests. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8370 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6aaf5c5e07d2bc8e122b2a68f5d92bed5ae7bc78 2017-03-01 05:57:46 +00002849e9ec8d8be6daa3f5c9db5f17bf33290447f6Running the Bitten tests.editadvance_clubb_core_module.F90latin_hypercube_driver_module.F90a6062d549742eeeeec89ba1fd47e8ba7de4b587b1494005902000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some comments so that CLUBB-SILHS would be consistent with the CLUBB-SILHS overview document that I am writing. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8375 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f3f8fc84aa3c36b96796c683052f3f443980e0a7 2017-05-05 17:38:22 +0000a6062d549742eeeeec89ba1fd47e8ba7de4b587bI added some comments so that CLUBB-SILHS would be consistent witheditlatin_hypercube_driver_module.F90advance_clubb_core_module.F90eb63cc3ecb36c7abf5b3dc60006f1285c707ffe11494005902000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some comments so that CLUBB-SILHS would be consistent with the CLUBB-SILHS overview document that I am writing. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8375 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f3f8fc84aa3c36b96796c683052f3f443980e0a7 2017-05-05 17:38:22 +0000eb63cc3ecb36c7abf5b3dc60006f1285c707ffe1I added some comments so that CLUBB-SILHS would be consistent witheditadvance_clubb_core_module.F90math_utilities.F90silhs_api_module.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F90eda17276e4902acc2eb5264928fe293bc23750101494368703000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:805 Initial version of altitude-based weighting. This version does not consider that the radiation scheme requires soda straws with uniform thickness. We are also not sure if the sedimentation is handled correctly. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/ticket_805@8378 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 090f4e417e6e2f8e0b478dac0d331b452a29c35f 2017-05-09 22:25:03 +0000eda17276e4902acc2eb5264928fe293bc2375010clubb:ticket:805editlatin_hypercube_driver_module.F90editmath_utilities.F90editsilhs_api_module.F90editest_kessler_microphys_module.F90editlh_microphys_var_covar_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90c4d09b6d76afbfae6cb52cb37fa1910e51a035bb1494453475000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:805 Added a flag l_calc_weights_all_levs that determines if weighting takes place on each layer or just on k_lh_start. The flag is set to .false. when radiation is computed (e.g. every fifth time step). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/ticket_805@8379 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3a9cc7a5468a4e839050ca6042e7a1bdaaf94ad3 2017-05-10 21:57:55 +0000c4d09b6d76afbfae6cb52cb37fa1910e51a035bbclubb:ticket:805editlatin_hypercube_driver_module.F90editsilhs_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90e576fdda6b75d7dc50f48c79307d6664909592201495043807000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:805 renamed l_calc_weights_all_levs to l_calc_weights_all_levs_itime git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/ticket_805@8382 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9aa7ce04e8df560492ba903284c9b79fb799ca23 2017-05-17 17:56:47 +0000e576fdda6b75d7dc50f48c79307d666490959220clubb:ticket:805editlatin_hypercube_driver_module.F90editsilhs_api_module.F90silhs_importance_sample_module.F90output_2D_samples_module.F90e030ca7e04c0a0095b34b53a1e2088b9de562b011495560353000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor clubb:ticket:805, I made two changes: 1. I think that lh_sample_point_weights needs the k (vertical) dimension when outputting profiles of SILHS samples. 2. The arm_97 and mc3e cases were failing the Bitten tests (clubb:build:PortlandGroup:17188) because a number was out of range, preventing SILHS from choosing a category. It appears that either the category-choosing code has round-off error, or that a random number was equal to 1. I relaxed the assertion check, but a random number = 1 is unsafe because it could lead to an infinity if it is transformed (exponentiated). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8394 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 04f0546918d35f08ea8f1deadcdf9cff73f4b6d3 2017-05-23 17:25:53 +0000e030ca7e04c0a0095b34b53a1e2088b9de562b01For clubb:ticket:805, I made two changes:editsilhs_importance_sample_module.F90editoutput_2D_samples_module.F90advance_clubb_core_module.F90numerical_check.F90stats_zt_module.F90pdf_closure_module.F90pdf_parameter_module.F90stats_variables.F90stats_clubb_utilities.F901bdf138739edb357345723bef5f76f60b0df026c1500069477000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAs a first step, I changed all instances of rrtthl to corr_rt_thl_1. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8405 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 79fdfb7e6a2ee9170090af10d080d8d936a149c1 2017-07-14 21:57:57 +00001bdf138739edb357345723bef5f76f60b0df026cAs a first step, I changed all instances of rrtthl to corr_rt_thl_1.editnumerical_check.F90editpdf_parameter_module.F90editstats_zt_module.F90editstats_variables.F90editstats_clubb_utilities.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_zt_module.F90numerical_check.F90pdf_closure_module.F90stats_variables.F90pdf_parameter_module.F90stats_clubb_utilities.F902f64d7d1fad1935e490184a2f226e249b4dadeee1500071690000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2. Since an additional stat has been added to output, this particular change is BIT_CHANGING. However, this is only for GrADS _zt output files. Results in GrADS _zm and _sfc output files remain the same. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8406 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b4b6c041f955df44b7e95fbcc72b4bfbfabf91a1 2017-07-14 22:34:50 +00002f64d7d1fad1935e490184a2f226e249b4dadeeeI have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2.editstats_variables.F90editstats_zt_module.F90editnumerical_check.F90editpdf_closure_module.F90editpdf_parameter_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90pdf_closure_module.F90advance_clubb_core_module.F90pdf_parameter_module.F90numerical_check.F909e72781b4211e81e73b40cafe2fc4f0f0ad3a30d1500529380000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2 to the pdf_parameter derived data type. The value of these variables is simply set to 0 for the ADG1 PDF. They have not yet been output to stats. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8407 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6a265cc291b093421e23178aaf0a2793a513fdbc 2017-07-20 05:43:00 +00009e72781b4211e81e73b40cafe2fc4f0f0ad3a30dI have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2editnumerical_check.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editpdf_parameter_module.F90stats_variables.F90stats_clubb_utilities.F90stats_zt_module.F905c7d2be0e9f62502f81ce75fe3741456dae750ed1500601225000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2. The results in GrADS _zt output files change, owing to additional statistics. This commit is BIT_CHANGING. Otherwise, all the other GrADS output files stay exactly the same. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8408 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71c2743e87f125b0e60ccae83fc1fff07e69cb6f 2017-07-21 01:40:25 +00005c7d2be0e9f62502f81ce75fe3741456dae750edI added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2,editstats_variables.F90editstats_clubb_utilities.F90editstats_zt_module.F90pdf_closure_module.F90d854c55ef50cfb617782f166fb066c43ceb8ada71501016894000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to include within-component correlations of w and rt or w and theta-l. I am also replacing the hardwired settng of corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2 to 0 (for ADG1) with the equations that solve for these correlations. For the ADG1, the result of the equation is within-component correlations that have a value of 0 --- well, within numerical roundoff error of 0 (such as 1.0e-14). Since this code change technically changes results, this commit is BIT_CHANGING. However, plotgen shows profiles exactly overlap for almost all cases. The ultra-sensitive ARM 97 case is the most notable exception. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8409 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e5487001c112145b1f562684e41498d04ef27f89 2017-07-25 21:08:14 +0000d854c55ef50cfb617782f166fb066c43ceb8ada7I am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to includeeditpdf_closure_module.F90pdf_utilities.F9065c599a0a6b342524a4e151d6a5fe6b29f792af21501124070000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a special function to calculate the within-component correlation of eta and variable x (such as w), which depends, in part, on the within-component correlaton of rt and x and the within-component correlation of theta-l and x. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8410 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fb019f47f4446c226d298f7219d77628c879392 2017-07-27 02:54:30 +000065c599a0a6b342524a4e151d6a5fe6b29f792af2I am adding a special function to calculate the within-component correlation ofeditpdf_utilities.F90pdf_closure_module.F90ec0c789074314e3ce17bafe76ff0f03d46431f7c1501134625000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to subroutine pdf_closure. They calculate the within-component correlations by calling utility functions in PDF utilities. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8411 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9ca795e3b8d60784a00b76016f8b209c9a93203 2017-07-27 05:50:25 +0000ec0c789074314e3ce17bafe76ff0f03d46431f7cI added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2editpdf_closure_module.F90pdf_parameter_module.F90pdf_closure_module.F90numerical_check.F90c5840a13dc0ebcb6ee34e88c8c56ba714373b3121501709183000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8412 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a43fc0230324a470f3d7ab7c3f1345b54994ad84 2017-08-02 21:26:23 +0000c5840a13dc0ebcb6ee34e88c8c56ba714373b312I am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to typeeditpdf_parameter_module.F90editpdf_closure_module.F90editnumerical_check.F90stats_variables.F90setup_clubb_pdf_params.F90stats_zt_module.F90a1089add9c25d5324dde3dbd23e95e3b33821b081501714052000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow that the PDF component correlations of w and chi, as well as w and eta, will be allowed to be something other than 0 when a new PDF is used, stats needs to account for that. Already in the code, corr_chi_eta_1 is the value calculated in PDF closure, while corr_chi_eta_1_ca is the actual value used in the correlation array. This depends on whether the calculated value or a prescribed value is used in the array. This code is now being mimicked for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2. The first step is change the current stats output corr_w_chi_1 to corr_w_chi_1_ca, etc. The results in GrADS *.dat output files from this revision are an exact match to the results in GrADS *.dat output files from the previous revision for all cases. The GrADS *.ctl files differ because the stat names have changed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8413 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8a0b4efb9a160adb315c099462bcc07dc5b9359e 2017-08-02 22:47:32 +0000a1089add9c25d5324dde3dbd23e95e3b33821b08Now that the PDF component correlations of w and chi, as well as w and eta,editstats_variables.F90editsetup_clubb_pdf_params.F90editstats_zt_module.F90stats_variables.F90stats_clubb_utilities.F90stats_zt_module.F90ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f61501716478000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2. The results in GrADS output files differ because of the additional statistics, so this revision is BIT_CHANGING. However, this is only for the *_zt output files. The results in GrADS *_zm and *_sfc output files from this revision are and exact match to the results in GrADS *_zm and *_sfc files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8414 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 309a5fed35104c5422cc4ad24efc8c0c241ad858 2017-08-02 23:27:58 +0000ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f6I am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1,editstats_variables.F90editstats_zt_module.F90editstats_clubb_utilities.F90model_flags.F90setup_clubb_pdf_params.F90clubb_api_module.F90corr_varnce_module.F908ca31ccec167f25a7f32ddbf3ca7b54d3a8230321501719775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the name of the flag l_fix_chi_eta_correlations to l_fix_w_chi_eta_correlations. This is because code will need to be introduced to fix the PDF component correlations of w and chi and w and eta for SILHS. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8415 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 32b0f55832325418462852f9fc611c2ed25a7b2c 2017-08-03 00:22:55 +00008ca31ccec167f25a7f32ddbf3ca7b54d3a823032I am changing the name of the flag l_fix_chi_eta_correlations toeditcorr_varnce_module.F90editmodel_flags.F90editclubb_api_module.F90editsetup_clubb_pdf_params.F90pdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F905779b395cf8ca60cdd2b751d238da3b2c45421291501828308000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe two component normal (double Gaussian) PDF used by CLUBB will now be selected by an integer index, rather than multiple logical flags. The PDF type used by CLUBB is called iiPDF_type. The value of iiPDF_type can be set to one of the following: iiPDF_ADG1 = 1: ADG1 PDF (default) iiPDF_ADG2 = 2: ADG2 PDF (can only be used with input fields) iiPDF_3D_Luhar = 3: 3D Luhar PDF (can only be used with input fields). Additional PDF types will be added in the near future. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:770. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8416 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b7157d59487b308c22704bc6f37dc39fb1acb0b 2017-08-04 06:31:48 +00005779b395cf8ca60cdd2b751d238da3b2c4542129The two component normal (double Gaussian) PDF used by CLUBB will now beeditmodel_flags.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F908edb8709cbdb95f0e8ae17bf23a57d9863c9d77d1501887618000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the checking of the options for the PDF call placement to subroutine setup_clubb_core, which is the same place where the options for the PDF type are checked. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8418 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7d2573b3d770b6f6f0b3a899a49f2ea17978e381 2017-08-04 23:00:18 +00008edb8709cbdb95f0e8ae17bf23a57d9863c9d77dI moved the checking of the options for the PDF call placement to subroutineeditadvance_clubb_core_module.F90setup_clubb_pdf_params.F9026a1ae6570d7ca0c695eab9bd90bd6e66bb6f3131502394562000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering setup PDF parameters to be able to read in the values of corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 calculated by CLUBB's PDF closure when l_fix_w_chi_eta_correlations is turned off. Since RICO and RICO SILHS have l_fix_w_chi_eta_correlations turned off by default, and since the values of corr_w_chi_1 are within numerical roundoff of 0, but are not exactly 0 (since they aren't hardwired to 0 anymore in this situation), the GrADS output results for the RICO cases are technically BIT_CHANGING. However, for all other cases, the results in GrADS output files from this revison are an exact match to the results in GrADS output files from the previous revison. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8420 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f78b2d5236cd3ee28677ab616d9a3189fb3e1cde 2017-08-10 19:49:22 +000026a1ae6570d7ca0c695eab9bd90bd6e66bb6f313I am altering setup PDF parameters to be able to read in the values ofeditsetup_clubb_pdf_params.F90new_pdf.F90c07ab5ccd5a6e475db0719d161e28b3928b9331c1502937779000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the new file new_pdf.F90 to the CLUBB core directory. So far, it basically contains a few comments. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8424 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 907fafe42349a2f36c433b92f7e96fd9206a182f 2017-08-17 02:42:59 +0000c07ab5ccd5a6e475db0719d161e28b3928b9331cI am adding the new file new_pdf.F90 to the CLUBB core directory. So far, itaddnew_pdf.F90new_pdf.F90ce75f5ce98726c064acad7ff3b291699db00bf2e1503201511000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a large amount of code to the new PDF. I have filled in the driver subroutine, and I have added functions and subroutines for mixture fraction, the PDF component means and standard deviations for the "setter" variable, and the PDF component means and standard deviations for the "responder" variables. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8427 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 014bdf1009c7ade517a2a13b457a8d0dfcbc915e 2017-08-20 03:58:31 +0000ce75f5ce98726c064acad7ff3b291699db00bf2eI am adding a large amount of code to the new PDF. I have filled in the drivereditnew_pdf.F90new_pdf.F9085308f4beb5f735c34d9d8e875a722134919d6a71504037851000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding code to the new PDF that calculates the minimum and maximum allowable values of F_x for a responding variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8431 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e00f9da2367b8a8c40031b8d2f9817458ef1533 2017-08-29 20:17:31 +000085308f4beb5f735c34d9d8e875a722134919d6a7I am adding code to the new PDF that calculates the minimum and maximumeditnew_pdf.F90pdf_closure_module.F9011d7a9d84753ae52c284a70bf29849bc744ed9c41504043430000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new iiPDF entry for the new PDF, and I neatened some of the current code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8432 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8f478d6814c6a69b3677af8309f4a145fe85090e 2017-08-29 21:50:30 +000011d7a9d84753ae52c284a70bf29849bc744ed9c4I added a new iiPDF entry for the new PDF, and I neatened some of the currenteditpdf_closure_module.F90pdf_closure_module.F907ae91ab288665049bbef456846c14561ab3ac1081504044268000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added an option to call the new PDF from subroutine pdf_closure. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8433 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 208d82318173789a7c7d6e09277832b2d5fb39f4 2017-08-29 22:04:28 +00007ae91ab288665049bbef456846c14561ab3ac108I added an option to call the new PDF from subroutine pdf_closure.editpdf_closure_module.F90advance_clubb_core_module.F90df45d687af4c60ee9f4d8dc3ed58df880c4e90f11504045491000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI had to add checking for the new PDF so someone does not try to run it interactively until it is ready for that. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8435 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ee48cae5f28e2184bf87cd80351fc1987fddb28d 2017-08-29 22:24:51 +0000df45d687af4c60ee9f4d8dc3ed58df880c4e90f1I had to add checking for the new PDF so someone does not try to run iteditadvance_clubb_core_module.F90advance_clubb_core_module.F90pdf_closure_module.F90250072e68b4e2047771089a721f91f5648f686ee1504104485000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a couple changes to (1) initialize two variables that aren't used by the new PDF (alpha_rt and alpha_thl) to default values in order to avoid them being set to NaN and causing a runtime error, and (2) calculate skewness from thlp3 and thlp2 (or rtp3 and rtp2) for the new PDF. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8437 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fb0580861183c3d696238bd7168d1cfbc97bcd3 2017-08-30 14:48:05 +0000250072e68b4e2047771089a721f91f5648f686eeI made a couple changes to (1) initialize two variables that aren't used by theeditpdf_closure_module.F90editadvance_clubb_core_module.F90new_pdf.F90122a9c185ebc5211667fef6f3500c821a50366141504114265000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a conditional to the subroutine that sets the responder parameters. When both Skx and F_x are exactly 0 (and the only Skx that can be represented when F_x is 0 is a Skx of 0), a couple of equations end up with an undefined 0/0. In this scenario, the PDF is converging to a single Gaussian. When both Skx and F_x have a value of 0, the PDF of responder variable x is now defined to be a single Gaussian (which is the shape it was converging to). CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8439 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 816a6b607a2d470e1e21faaba2cae46905211943 2017-08-30 17:31:05 +0000122a9c185ebc5211667fef6f3500c821a5036614I added a conditional to the subroutine that sets the responder parameters.editnew_pdf.F90new_pdf.F907760911823e32928409cbe64bf70121141891a341504332693000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the beginnings of a new unit test for the PDF parameters. Currently, it tests the new PDF, but only the "setter" variable. It checks based on a variety of input values and loops over many different tunable parameter values. Once mu_w_1, mu_w_2, sigma_w_1, sigma_w_2, and mixt_frac have been calculated, the values of wm, wp2, wp3, and Skw are recalculated using PDF parameters and compared to their original values. Additionally, the test also checks that sigma_w_1 >= 0, sigma_w_2 >= 0, and 0 < mixt_frac < 1. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8441 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 116cd507bfb549e1fd9678dc1207a98de3d8bb52 2017-09-02 06:11:33 +00007760911823e32928409cbe64bf70121141891a34I have added the beginnings of a new unit test for the PDF parameters.editnew_pdf.F90new_pdf.F9082a034dfa874b3e850244853312a754392e823bd1504736013000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated the PDF parameter unit test to make a call to the full PDF (for the new PDF). CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8442 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b3c8936e8d546569a1877900dc53dcc7cffdb9a4 2017-09-06 22:13:33 +000082a034dfa874b3e850244853312a754392e823bdI have updated the PDF parameter unit test to make a call to the full PDF (foreditnew_pdf.F90pdf_closure_module.F908e609886fe423733d4568c845d91d3847cc808741504766042000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a feature to the PDF parameter unit tests which allows the user to declare which PDF is being tested. With this, I have added some code to test the "setter" variable for ADG1 (which is always w). The test loops over incremental values of sigma_sqd_w for each of the PDF input parameter sets, calculates the PDF component means, component variances, and mixture fraction, and then recalculates wm, wp2, wp3, and Skw. I still have to add code to test the full PDF for ADG1. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8443 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 645ed2b73204952f8d3cc9193f516576d13ef6ae 2017-09-07 06:34:02 +00008e609886fe423733d4568c845d91d3847cc80874I have added a feature to the PDF parameter unit tests which allows the usereditpdf_closure_module.F90new_pdf.F90df8d5977e025ede94c6b058b97856c0bed8cb3261504842829000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn the setter variable description and subprograms, I made a name change from mu_w_1, etc., to mu_x_1, etc. This was done because other variables besides w might be used as the setter variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8444 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 04ecfc94c1d512f4815f332ea0d6271b413b7394 2017-09-08 03:53:49 +0000df8d5977e025ede94c6b058b97856c0bed8cb326In the setter variable description and subprograms, I made a name change fromeditnew_pdf.F90new_pdf.F90f191465a17f26341952b058689a1d428c0a4bfdd1504846771000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated the method of calculating the setter variable so that mu_x_1 and mu_x_2 are set based on the sign of <w'x'>. This is described in the back pages of the derivation of the method for the setting variable. In a nutshell, sqrt(F_x) is replaced by sqrt(F_x) * sgn( <w'x'> ) in the entire equation set. Most equations use F_x (or an integer power of F_x). Even after the replacement, F_x remains F_x (because the square, etc., of sgn( <w'x'> ) is always 1). The only equations that are altered are the equations for mu_x_1 and mu_x_2. When the sign of <w'x'> is positive, mu_x_1 >= mu_x_2. Otherwise, when the sign of <w'x'> is negative, mu_x_1 <= mu_x_2. When variable x is w, the sign of wp2 is always postive, and mu_w_1 >= mu_w_2, following previous conventions. This change allows for things such as mu_thl_1 <= mu_thl_2 when <w'thl'> < 0 in the event that theta-l is the setting variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8445 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 733f5f36dad88f0ecaef746b8e01c4ffbff39ef5 2017-09-08 04:59:31 +0000f191465a17f26341952b058689a1d428c0a4bfddI have updated the method of calculating the setter variable so that mu_x_1editnew_pdf.F90new_pdf.F902dcf994553dc649bcd496308117a8b6a97113d4b1504933930000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added primarily some more documentation and notes. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8446 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7b3f11bef3737730d2d558cff2e12e27c75b139 2017-09-09 05:12:10 +00002dcf994553dc649bcd496308117a8b6a97113d4bI added primarily some more documentation and notes.editnew_pdf.F90new_pdf.F90e81daa5f055f4c99b63bd444bce743bd8f92c8971505141754000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some more comments documenting the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8447 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 08c4a3ab5eebcd45cefffb401c35386c88a872b6 2017-09-11 14:55:54 +0000e81daa5f055f4c99b63bd444bce743bd8f92c897I added some more comments documenting the code.editnew_pdf.F90new_pdf.F90pdf_closure_module.F90constants_clubb.F9046632b4b96b05fb8079924794420043194c5ee011505152039000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of some of the expressions that a script might try to flag as "magic numbers" by doing something that I started a while ago --- declaring those numbers as constant parameters in the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8448 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e99a65715204e9382dfb6357ac1a76ebf4517581 2017-09-11 17:47:19 +000046632b4b96b05fb8079924794420043194c5ee01I got rid of some of the expressions that a script might try to flag aseditpdf_closure_module.F90editnew_pdf.F90editconstants_clubb.F90new_pdf.F90b7a9edf6cdf37b4d301a5426e8f7f787fac26ccc1505255733000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added much more documentation about the responder variable. Specifically, much of the new documentation is about how the limits of F_x are calculated. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8449 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a8d6f95d883a38bf345324b717d3f1955d5688d5 2017-09-12 22:35:33 +0000b7a9edf6cdf37b4d301a5426e8f7f787fac26cccI added much more documentation about the responder variable. Specifically,editnew_pdf.F90original_pdf.F9096dd4a8d1759e5ed899571e92df95527e3995d871505371440000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2, and 3D Luhar PDF closures. As of right now, the original code still remains in PDF closure, and this code is not currently interface with any part of CLUBB. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8450 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4d83bf47bf1260f79b1584952743991e1d4af68a 2017-09-14 06:44:00 +000096dd4a8d1759e5ed899571e92df95527e3995d87I am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2,addoriginal_pdf.F90original_pdf.F90pdf_closure_module.F90e45432703a561cdc6e81c106568c3cab71b56bba1505406315000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have now switched the PDF closure code over to calling the code that had been moved to original_pdf.F90 in r8450. The code that remained in PDF closure has now been deleted. I have also moved the code to calculate the PDF parameters for passive scalars to inside the driver subroutines for ADG1 and ADG2. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8451 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5b68933fc999bc8258625b0d9a3fd8c1b3128d46 2017-09-14 16:25:15 +0000e45432703a561cdc6e81c106568c3cab71b56bbaI have now switched the PDF closure code over to calling the code that had beeneditoriginal_pdf.F90editpdf_closure_module.F90new_pdf.F901a2c52b7d840dea49e23776c4d9591929663b5bc1505617261000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the documentation in the code comments for the setter method and generalized the mixture fraction code so that any variable, x, can be used as the setter variable, not just w. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8453 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 319e3ff46c48a3a9efea5d7e7b977ddeb203ee4b 2017-09-17 03:01:01 +00001a2c52b7d840dea49e23776c4d9591929663b5bcI updated the documentation in the code comments for the setter method andeditnew_pdf.F90new_pdf.F901b93dd6436c3a08431325786bfc77e3a0ed10c5f1505617722000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8454 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 476d92833ba72680bb61cee9e1a5846e2df19a53 2017-09-17 03:08:42 +00001b93dd6436c3a08431325786bfc77e3a0ed10c5fI added a comment.editnew_pdf.F90pdf_utilities.F90new_pdf.F90pdf_closure_module.F909638daee00cbed38db5adb3d64ec7cdba43206c51505856406000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. This function calculates the PDF component correlations of two variables that are both distributed as part of a two component normal distribution. The code is a copy of code that was previously found in subroutine pdf_closure. Now, pdf_closure calls this function multiple times over, rather than repeating the same code multiple times in a row. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8455 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ee93f6bfb3c984fdec7a851189dfc4c502aae5c0 2017-09-19 21:26:46 +00009638daee00cbed38db5adb3d64ec7cdba43206c5I added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. Thiseditpdf_closure_module.F90editnew_pdf.F90editpdf_utilities.F90new_pdf.F90512906b3f915322181776bee28aa6abd4bb7703a1505887818000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some more descriptive comments and a new function that calculates the coefficient of the wp4 equation (for implicit time stepping), where: wp4 = coef_wp4_implicit * wp2^2^ CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8456 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4336f01d26892857c38991297e10d652737d4754 2017-09-20 06:10:18 +0000512906b3f915322181776bee28aa6abd4bb7703aI added some more descriptive comments and a new function that calculates theeditnew_pdf.F90new_pdf.F90376bd21e269d7d0c874d2dc5fb12d05f99d8794f1505965326000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passed out of the subroutine that calculates the PDF parameters for the setter variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8457 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dd22397b49b2096afb51cdefa80f672f93bc5c50 2017-09-21 03:42:06 +0000376bd21e269d7d0c874d2dc5fb12d05f99d8794fI updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passededitnew_pdf.F90new_pdf.F90ec87600ee30f3e74fb2037e0166318973b4b54161505965630000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a mistake. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8458 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56c95f8615f28064b8a74c51c26d791616eb2cb4 2017-09-21 03:47:10 +0000ec87600ee30f3e74fb2037e0166318973b4b5416I fixed a mistake.editnew_pdf.F90new_pdf.F90060c2e9f5a165d0db494d1fa22ead556ef6a717d1506056092000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code to call the new function that calculates wp4 implicitly from the unit testing code. I also added some more comments. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8459 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 98fe8bf67b016720bdc77236c765ea80c681ea57 2017-09-22 04:54:52 +0000060c2e9f5a165d0db494d1fa22ead556ef6a717dI have added code to call the new function that calculates wp4 implicitly fromeditnew_pdf.F90pdf_closure_module.F90a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd51506058934000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2 and wpthlp2) into their own functions. At most timesteps, results are exactly the same. On occassion, very, very small discrepancies between the previous version and the new revision show up. The calculations occur with everything in the exact same order as they were performed in previously. They only thing different is passing code out of functions and back to the main program. This odd behavior makes this code technically BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8460 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 79030bc1913e95ecb36bd613713658d726944188 2017-09-22 05:42:14 +0000a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd5I moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2editpdf_closure_module.F90new_pdf.F905384d9d0de5cbfa54786e0022ac45d03923528bb1506234447000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added another function to the new PDF. This function helps to calculate wpxp2 implicitly as part of the xp2 predictive equation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8462 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 33547d862fbf9fecded1db6f1b8f0d4c27db176d 2017-09-24 06:27:27 +00005384d9d0de5cbfa54786e0022ac45d03923528bbI added another function to the new PDF. This function helps to calculateeditnew_pdf.F90new_pdf.F90a104dde34400e73f7996e9b0528415d6529defc61506460821000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a special case for the wpxp2 implicit code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8463 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5d60384202b85e0e30d3b33c1ec996550e5e485f 2017-09-26 21:20:21 +0000a104dde34400e73f7996e9b0528415d6529defc6I added a special case for the wpxp2 implicit code.editnew_pdf.F90pdf_closure_module.F90b20f067da35fa0881ebe6ca019282953548d637d1506464947000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBack in clubb:r8409, the PDF component correlations of w and rt and w and theta-l were calculated rather than assumed to be 0. For ADG1 and ADG2, the resulting values of the correlations were within numerical roundoff error of 0 (for example, 1.0e-14). However, in the interest of trying to keep results in-line as much as possible with historical results, this commitment introduces code to simply set these PDF component correlations to 0 (and avoid the calculation) when the chosen PDF is ADG1 or ADG2. Otherwise, when other PDFs are used, the correlations will be calculated. This commitment is BIT_CHANGING. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8464 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 03e97996f9e5aace3643cf8da3a7019b8f864ed1 2017-09-26 22:29:07 +0000b20f067da35fa0881ebe6ca019282953548d637dBack in clubb:r8409, the PDF component correlations of w and rt and w andeditpdf_closure_module.F90new_pdf.F90315aa47cfb4f0803b723148723f70a5771b634441506568243000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a subroutine that calculates the implicit and explicit portions of the wp2xp equation, where: wp2xp = coef_wp2xp_implicit * wpxp + coef_wp2xp_explicit. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8465 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6e7a3c61a7ea3f44564e4ab82f73facba6c7115 2017-09-28 03:10:43 +0000315aa47cfb4f0803b723148723f70a5771b63444I added a subroutine that calculates the implicit and explicit portions of theeditnew_pdf.F90original_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90682b8167989760c5e3bdb5fe3112632a480988011506568869000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8466 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ea939d307f723c18aba6dff8ef2a0c739263e2a0 2017-09-28 03:21:09 +0000682b8167989760c5e3bdb5fe3112632a48098801I renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90.addadg1_adg2_3d_luhar_pdf.F90deleteoriginal_pdf.F90editpdf_closure_module.F90pdf_closure_module.F90stats_variables.F90advance_clubb_core_module.F90new_pdf.F90stats_zt_module.F9016b439a231f958d7434c9945fda5b0a33f5659561506643797000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt, max_F_rt, min_F_thl, and max_F_thl. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases for all output files besides the *_zt.dat output files. Owing to the new stats, the *_zt.dat output files make this revision BIT_CHANGING. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8467 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2243298ace53299c9e0222adf2cd233026fe6268 2017-09-29 00:09:57 +000016b439a231f958d7434c9945fda5b0a33f565956I added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt,editstats_variables.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editnew_pdf.F90editstats_zt_module.F90new_pdf.F90pdf_closure_module.F90new_pdf_main.F9014cd9184faf1cd20250b7dafa64a794f0097225b1506664323000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI split the new PDF into two files. I added a new file that currently houses the driver. The core functions and subroutines of the new PDF remain in the original file. The Happy Birthday to me CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8469 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 68224186fc824f10965e7f887d79f6a3b6d414d4 2017-09-29 05:52:03 +000014cd9184faf1cd20250b7dafa64a794f0097225bI split the new PDF into two files. I added a new file that currently houseseditpdf_closure_module.F90editnew_pdf.F90addnew_pdf_main.F90saturation.F907fa72c493db849383093c4b14b73e1e5567b47c61507128630000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI clipped temperature within the Goff-Gratch functions for saturation over liquid and ice. The goal was to avoid the creation of NaNs that caused CAM to crash over the Himalayas. The result of applying a minimal threshold on temperature is to set saturation to the same small value in all cold areas. To test the code change, I ran the priority cases and determined that the new code produces bin-diff identical results for these cases. That just means that these cases are not cold. However, the code change might increase saturation in cold areas in CAM, thereby diminishing condensation in the upper atmosphere. It would be prudent to check a WACCM simulation for degradation. If there is degradation, the minimum temperatures could be set to smaller values. For cam:ticket:98. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8470 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6c2c6fc13a7673bcdf5da93bde0a350086383b4e 2017-10-04 14:50:30 +00007fa72c493db849383093c4b14b73e1e5567b47c6I clipped temperature within the Goff-Gratch functions for saturation over liquid and ice.editsaturation.F90pdf_closure_module.F902056a9a395e6d8d41d25f58d5e65da97dc4f46bf1507164340000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI initialized some output variables in order to prevent a runtime error. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8472 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3047483573f92b8e310d3f1529a9870a3bdf8446 2017-10-05 00:45:40 +00002056a9a395e6d8d41d25f58d5e65da97dc4f46bfI initialized some output variables in order to prevent a runtime error.editpdf_closure_module.F90new_pdf_main.F90d6bbb281bffd128da2be6a16fa6275df12f972f31507177058000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a sub-driver level subroutine for the calculations necessary for a responder variable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8473 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b930c433b4f7c0162637737a57bd4b5dd51c663 2017-10-05 04:17:38 +0000d6bbb281bffd128da2be6a16fa6275df12f972f3I made a sub-driver level subroutine for the calculations necessary for aeditnew_pdf_main.F90new_pdf.F90new_pdf_main.F9009094b52ced98602026e3ba4b157d17c07c46b6e1507338548000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to allow the variable (of w, rt, or theta-l) with the greatest magnitude of skewness be the setter variable (the variable that sets the mixture fraction). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8476 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5c0be9f8b54edea4f614fe27d7bdcbabf21071d9 2017-10-07 01:09:08 +000009094b52ced98602026e3ba4b157d17c07c46b6eI added code to allow the variable (of w, rt, or theta-l) with the greatesteditnew_pdf.F90editnew_pdf_main.F90new_pdf_main.F90b8df0b0f7f07bbafe999455169a9e03c928f7b741507356781000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added calls to the functions and subroutines that calculate the implicit and explicit components of equations for wp4, wpxp2, and wp2xp. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8477 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bd5eb61264aed108784e8a104833036e2737d08d 2017-10-07 06:13:01 +0000b8df0b0f7f07bbafe999455169a9e03c928f7b74I added calls to the functions and subroutines that calculate the implicit andeditnew_pdf_main.F90new_pdf.F90new_pdf_main.F90796393862523d0e2dc6dcd049937db3fc8702b861508011950000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit) to term_wp2xp_explicit (term_wp2rtp_explicit and term_wp2thlp_explicit) because "term" is a more accurate description here than "coef". git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8480 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3518be4233b5b02e269e2f3d65518d5006cc64ee 2017-10-14 20:12:30 +0000796393862523d0e2dc6dcd049937db3fc8702b86I changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit)editnew_pdf.F90editnew_pdf_main.F90new_tsdadg_pdf.F90pdf_closure_module.F9058cd28c513082639da7ed8a8c98ea851cfd53ce91508023017000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new file for the new trivariate skewness-dependent analaytic double Gaussian (TSDADG) PDF. I have added an interface in the unit tests, although the standard tests aren't conducted yet. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8481 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f6b6b4d8826565e3a7efe3f7b0ad3004d67fd74b 2017-10-14 23:16:57 +000058cd28c513082639da7ed8a8c98ea851cfd53ce9I am adding a new file for the new trivariate skewness-dependent analayticaddnew_tsdadg_pdf.F90editpdf_closure_module.F90new_tsdadg_pdf.F90628c9ccf8a8ec694e55e2a305f72feadc5fc31341508296514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the new Trivariate skewness-dependent analytic double Gaussian PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8482 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2bbab551f1c16a8aacee8191faf4e6fe9f078a03 2017-10-18 03:15:14 +0000628c9ccf8a8ec694e55e2a305f72feadc5fc3134I fixed a bug in the new Trivariate skewness-dependent analytic double Gaussianeditnew_tsdadg_pdf.F90new_tsdadg_pdf.F90514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f11508302674000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order for the TSDADG PDF to work correctly, when Skx * sgn( <w'x'> ) >= 0, l_x_1 > 2/3 and 0 < l_x_2 < 1. However, when Skx * sgn( <w'x'> ) < 0, the limits need to be reversed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8483 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 430ba9fb82f4868373f7d7b04e9f578d7d2a7aaa 2017-10-18 04:57:54 +0000514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f1In order for the TSDADG PDF to work correctly, when Skx * sgn( <w'x'> ) >= 0,editnew_tsdadg_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F901be60070880272802ecd85639370eaaa7130eead1508884727000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order to clarify coding in CLUBB, I am moving a block of code that is specific to ADG1 and ADG2 to inside their driver subroutines, rather than keep it outside the driver subroutines, in subroutine pdf_closure, where it is more confusing to someone trying to understand the flow of the code. I also added the full PDF unit test for ADG1. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8484 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dcefdbe88476adfa5843797ca9b175f0532ba91d 2017-10-24 22:38:47 +00001be60070880272802ecd85639370eaaa7130eeadIn order to clarify coding in CLUBB, I am moving a block of code that iseditpdf_closure_module.F90editadg1_adg2_3d_luhar_pdf.F90adg1_adg2_3d_luhar_pdf.F90284816e2267c454cec10b226e2a9e4f5beed04791509086030000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved when wp2 became very small. This bug is being fixed by treating the rtp2, thlp2, and sclrp2 distributions as single Gaussians in this limit. CLUBB Trac ticket reference: clubb:ticket:809. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8485 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6fc49c6d8ff3e053530b7120b4085ec62f6b1c3c 2017-10-27 06:33:50 +0000284816e2267c454cec10b226e2a9e4f5beed0479I am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved wheneditadg1_adg2_3d_luhar_pdf.F90new_tsdadg_pdf.F90f254c056660b61f160ad0ddb4add793c7fb6cedb1509086289000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the TSDADG PDF by adding the responding variable description, the responding variable subroutine, and the driver subroutine. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8486 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5aee19d916b7c32862b399d9be7cf52aa8cc95e9 2017-10-27 06:38:09 +0000f254c056660b61f160ad0ddb4add793c7fb6cedbI updated the TSDADG PDF by adding the responding variable description, theeditnew_tsdadg_pdf.F90pdf_closure_module.F908c5f2d26747d7b6a9fbd65eae0ce0a4dc8d6fb241509142043000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen ADG1 or ADG2 are not used, we have to set alpha_rt, alpha_thl, and alpha_sclr to values (their default values) in order to avoid a runtime error from the Oracle compiler. Previous, we had been adding statements after the call to every non-ADG1-or-ADG2 PDF. I am changing that to do it in one spot, similar to the setting of the F_w, etc. output when the new PDF is used. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8488 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3dda9fdc4aa7793281899453d947140fd8e9e9ab 2017-10-27 22:07:23 +00008c5f2d26747d7b6a9fbd65eae0ce0a4dc8d6fb24When ADG1 or ADG2 are not used, we have to set alpha_rt, alpha_thl, andeditpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F9082e4512cd314dd9167d6fdf34c1c0131f534bae41509144224000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am calling the new TSDADG PDF from subroutine pdf_closure. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8489 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 47b687afb77aba9f3ad508722183a92a76cafff7 2017-10-27 22:43:44 +000082e4512cd314dd9167d6fdf34c1c0131f534bae4I am calling the new TSDADG PDF from subroutine pdf_closure.editadvance_clubb_core_module.F90editpdf_closure_module.F90new_tsdadg_pdf.F909e30e75783f5497150bf902e5ad196bf0c6644441509146193000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClarity changes to the new TSDADG PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8490 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 90d307cbedb920815bea8b4cb3e38bbf678ceee6 2017-10-27 23:16:33 +00009e30e75783f5497150bf902e5ad196bf0c664444Clarity changes to the new TSDADG PDF.editnew_tsdadg_pdf.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F904f8df90fd67b0ffb5fd8b8529e1ec87c7b49e7101509402367000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8491 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0909638d763d531940e2c39d0f29781bc944ba30 2017-10-30 22:26:07 +00004f8df90fd67b0ffb5fd8b8529e1ec87c7b49e710I added some references to the CLUBB-SILHS tech doc.editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90latin_hypercube_driver_module.F90eb7b43da00d1e363c842bfa9a13af8366261ea0b1509402367000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8491 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0909638d763d531940e2c39d0f29781bc944ba30 2017-10-30 22:26:07 +0000eb7b43da00d1e363c842bfa9a13af8366261ea0bI added some references to the CLUBB-SILHS tech doc.editlatin_hypercube_driver_module.F90new_tsdadg_pdf.F90d619f5f53cd31fd5e70aed41cdcab497d5e3bde31509666227000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the calculation of PDF component variances in the new TSDADG PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8492 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0f2d324713d9aceaeb79e1068f22a5961d392fdb 2017-11-02 23:43:47 +0000d619f5f53cd31fd5e70aed41cdcab497d5e3bde3I fixed a bug in the calculation of PDF component variances in the new TSDADGeditnew_tsdadg_pdf.F90latin_hypercube_driver_module.F90efe39da7fe654d39207de5386b2e8c6df823896b1509740754000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added more references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8493 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9bbd2e209eb3c3eabfc3bb809173a9c749aa91bf 2017-11-03 20:25:54 +0000efe39da7fe654d39207de5386b2e8c6df823896bI added more references to the CLUBB-SILHS tech doc.editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90grid_class.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F9019feff73609725876ea3aecc264562c49276db711509740754000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added more references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8493 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9bbd2e209eb3c3eabfc3bb809173a9c749aa91bf 2017-11-03 20:25:54 +000019feff73609725876ea3aecc264562c49276db71I added more references to the CLUBB-SILHS tech doc.editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editgrid_class.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90silhs_importance_sample_module.F90generate_uniform_sample_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F909978e28d197b2f7b30fbc58554fa93b6b00393e41509744684000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added more links to the CLUBB-SILHS overview tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8494 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c2da8b794e4beb2d89eac738d41f477dc2f6b299 2017-11-03 21:31:24 +00009978e28d197b2f7b30fbc58554fa93b6b00393e4I added more links to the CLUBB-SILHS overview tech doc.editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90editsilhs_importance_sample_module.F90editgenerate_uniform_sample_module.F90new_pdf_main.F9098527ca18b054a23337b2f533c07615fa3ea4eaa1510125763000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have set the tunable parameters F_x and zeta_x to skewness functions for the new PDF. Coefficients are currently declared in the driver subroutine and then passed into subroutines and functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8496 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c22cd4b53994328617fc67e53a7790cf1126a814 2017-11-08 07:22:43 +000098527ca18b054a23337b2f533c07615fa3ea4eaaI have set the tunable parameters F_x and zeta_x to skewness functions for theeditnew_pdf_main.F90stats_clubb_utilities.F90stats_zt_module.F90ccc0b6d541c0713648245747ab1eadaf9cfe888a1510273958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI needed to increase the limit of nvarmax_zt so that LBA (and other cases that use Morrison microphysics) could be run with all_stats.in. I also improved the warning messages when the number of variables exceeds nvarmax_***. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8500 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3f2cd8d90c71f059c2a0f5fe634139e31b77e32d 2017-11-10 00:32:38 +0000ccc0b6d541c0713648245747ab1eadaf9cfe888aI needed to increase the limit of nvarmax_zt so that LBA (and othereditstats_clubb_utilities.F90editstats_zt_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90pdf_closure_module.F90advance_clubb_core_module.F90grid_class.F90advance_xm_wpxp_module.F9010430950c7c61a6d3a595323d24a1307aab1a0571510584442000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI changed the URL references to the CLUBB-SILHS overview document. Instead of pointing to the larson-group.com webpage, they now point to arxiv.org. The shorter URL forestalls error messages from the CLUBB standards script. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8501 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9a8b38e22f389eff1c4a482ad5b599746d904ca5 2017-11-13 14:47:22 +000010430950c7c61a6d3a595323d24a1307aab1a057I changed the URL references to the CLUBB-SILHS overview document.editadvance_clubb_core_module.F90editgrid_class.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90silhs_importance_sample_module.F90generate_uniform_sample_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F902c7254b16efe51e134ceb8b03626db9070369c9e1510584442000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI changed the URL references to the CLUBB-SILHS overview document. Instead of pointing to the larson-group.com webpage, they now point to arxiv.org. The shorter URL forestalls error messages from the CLUBB standards script. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8501 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9a8b38e22f389eff1c4a482ad5b599746d904ca5 2017-11-13 14:47:22 +00002c7254b16efe51e134ceb8b03626db9070369c9eI changed the URL references to the CLUBB-SILHS overview document.editsilhs_importance_sample_module.F90editgenerate_uniform_sample_module.F90edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90mixing_length.F90advance_wp2_wp3_module.F90index_mapping.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90Nc_Ncn_eqns.F90stats_clubb_utilities.F90array_index.F90surface_varnce_module.F90corr_varnce_module.F905d4fb30b6c9723bafca4801a43b485a2ff04d90e1510970587000http://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhoc_browserChanged variable and subroutine names, see ticket 810 and 811 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8505 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 70c6930d3e20937b44ab1952c25f13703271bcf4 2017-11-18 02:03:07 +00005d4fb30b6c9723bafca4801a43b485a2ff04d90eChanged variable and subroutine names, see ticket 810 and 811editadvance_clubb_core_module.F90editindex_mapping.F90editmixing_length.F90editnumerical_check.F90editcorr_varnce_module.F90editarray_index.F90editclubb_api_module.F90editNc_Ncn_eqns.F90editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90editsurface_varnce_module.F90silhs_api_module.F90parameters_silhs.F90latin_hypercube_driver_module.F90800413e5d6b2b4e7d2102f32abc468d608332e901510970587000http://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhoc_browserChanged variable and subroutine names, see ticket 810 and 811 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8505 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 70c6930d3e20937b44ab1952c25f13703271bcf4 2017-11-18 02:03:07 +0000800413e5d6b2b4e7d2102f32abc468d608332e90Changed variable and subroutine names, see ticket 810 and 811editsilhs_api_module.F90editparameters_silhs.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90LY93_pdf.F90pdf_closure_module.F9087941baa3c7e8cac1b5fc43eb23d3f5376ce79291511303535000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the Lewellen and Yoh (1993) PDF to CLUBB for testing and comparison purposes. It has also been interfaced to CLUBB's unit testing and passes all unit tests. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8507 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b69cefc1eaee288c3bb9148f29f217bde5d22c2 2017-11-21 22:32:15 +000087941baa3c7e8cac1b5fc43eb23d3f5376ce7929I have added the Lewellen and Yoh (1993) PDF to CLUBB for testing and comparisoneditpdf_closure_module.F90editadvance_clubb_core_module.F90addLY93_pdf.F90advance_clubb_core_module.F90155144632ea823a8aad31c4e92c5dd2b12bd62fc1511310324000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed line length exceding 100 characters warnings git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8510 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5abcc9ff7571f0b1ee60353d593f0c9f6145e5ea 2017-11-22 00:25:24 +0000155144632ea823a8aad31c4e92c5dd2b12bd62fcFixed line length exceding 100 characters warningseditadvance_clubb_core_module.F90advance_clubb_core_module.F90mixing_length.F90cf54191c724355605855f800ef1e96aef010a2cb1512172470000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the arrangement of variables in the subroutine compute_mixing_length as well as calls to it clubb:ticket:815 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8513 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cafe9e697d9af413bdcfeee991fd94f7813cc6b7 2017-12-01 23:54:30 +0000cf54191c724355605855f800ef1e96aef010a2cbChanged the arrangement of variables in the subroutine compute_mixing_length as well as calls to it clubb:ticket:815editadvance_clubb_core_module.F90editmixing_length.F90advance_clubb_core_module.F901261bdb1eb0192241599c0695e77dbb74f33b4ab1512410380000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed lines exceeding 100 characters warnings clubb:ticket:815 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8514 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5706620361cc9b71e02f6527da0fe30869e37fe0 2017-12-04 17:59:40 +00001261bdb1eb0192241599c0695e77dbb74f33b4abFixed lines exceeding 100 characters warnings clubb:ticket:815editadvance_clubb_core_module.F90advance_clubb_core_module.F90b9d643f8efaabb8279bdb89230899dc95569bd321513099575000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added an option to incorporate the buoyancy term into CLUBB's eddy diffusivity for momentum. This option is controlled by the flag l_use_buoy_mod_Km_zm, but that flag is set to false, and so this commit should leave the answers bit for bit identical. For clubb:ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8515 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1f56ceb1efb1b3d32e2fe232bdfa180a952e1aaf 2017-12-12 17:26:15 +0000b9d643f8efaabb8279bdb89230899dc95569bd32I added an option to incorporate the buoyancy term into CLUBB's eddy diffusivity for momentum.editadvance_clubb_core_module.F90advance_clubb_core_module.F907dbb97784343b514c33d7f8b85578d0af7b9cb2d1513100152000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added c_K10 as a tuning parameter in front of the new momentum eddy diffusivity. Again, the results shouldn't change because the option is shut off. For clubb:ticket:791 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8516 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c31cb2119386f1d98fd944e43db018ed1356d27c 2017-12-12 17:35:52 +00007dbb97784343b514c33d7f8b85578d0af7b9cb2dI added c_K10 as a tuning parameter in front of the new momentum eddy diffusivity.editadvance_clubb_core_module.F90output_grads.F90clubb_api_module.F90output_netcdf.F90Skx_module.F90anl_erf.F90variables_diagnostic_module.F90setup_clubb_pdf_params.F90advance_helper_module.F90852d264a2c802e30cd4e0f83cab4c9d417c77d061515116246000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved unused parameters to clear warnings clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8519 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b8095c6e057e7c0aa9d430ad419ad03a4065683 2018-01-05 01:37:26 +0000852d264a2c802e30cd4e0f83cab4c9d417c77d06Removed unused parameters to clear warnings clubb:ticket:803editanl_erf.F90editvariables_diagnostic_module.F90editclubb_api_module.F90editadvance_helper_module.F90editSkx_module.F90editoutput_grads.F90editsetup_clubb_pdf_params.F90editoutput_netcdf.F90silhs_importance_sample_module.F90transform_to_pdf_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F904426d94037ce302e85668284a534bc046321534a1515116246000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved unused parameters to clear warnings clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8519 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b8095c6e057e7c0aa9d430ad419ad03a4065683 2018-01-05 01:37:26 +00004426d94037ce302e85668284a534bc046321534aRemoved unused parameters to clear warnings clubb:ticket:803editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90editsilhs_importance_sample_module.F90edittransform_to_pdf_module.F90advance_clubb_core_module.F90a63e4c88b6bcbd69a45cd2c6216327a9b01cffb01515451999000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI multiplied the eddy diffusivity for momentum by a skewness-dependent factor that is intended to reduce momentum flux in cumulus layers. The idea is that the cumuli contribute an upgradient flux that is not taken into account by our prior downgradient formulation. However, the results should be bit-for-bit identical since the flag that implements this, l_use_buoy_mod_Km_zm, is set to false. For ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8520 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4b601fea96554aac3e98e5bc3745bac6d2205c25 2018-01-08 22:53:19 +0000a63e4c88b6bcbd69a45cd2c6216327a9b01cffb0I multiplied the eddy diffusivity for momentum by a skewness-dependent factoreditadvance_clubb_core_module.F90new_pdf_main.F90pdf_closure_module.F90c5944a96c830d5fbbe8595c7673cbfbe30c90c3e1515477099000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the way that F_rt and F_thl are set in the new PDF. They are now set as a constant interpolation between min_F_x and max_F_x (where x is rt or thl), and the F_rt value can be reduced (toward min_F_rt) by exp_factor_rt, which is dependent on the adjusted (overall) correlation of rt and thl. The adjusted (overall) correlation of rt and thl is: adj_corr_rt_thl = rtpthlp / ( sqrt( rtp ) * sqrt( thlp2 ) ) * sgn( wprtp ) * sgn( wpthlp ). The exp_factor_rt is: exp_factor_rt = 1 - exp{ -0.2 * ( adj_corr_rt_thl + 1 )^5^ }. The equation for F_rt is: F_rt = min_F_rt + ( max_F_rt - min_F_rt ) * coef_rt * exp_factor_rt; where 0 <= coef_rt <= 1. The equation for F_thl is: F_thl = min_F_thl + ( max_F_thl - min_F_thl ) * coef_thl; where 0 <= coef_thl <= 1 (and where exp_factor_thl is simply set to 1). CLUBB Trac ticket references: clubb:ticket:777 and clubb:ticket:808. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8521 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c7465ccca8ca132cae3740697ffb3ecf87b45781 2018-01-09 05:51:39 +0000c5944a96c830d5fbbe8595c7673cbfbe30c90c3eI changed the way that F_rt and F_thl are set in the new PDF. They are now seteditnew_pdf_main.F90editpdf_closure_module.F90new_pdf_main.F90085d3f50af1eebbbaa47033513bccf03506ab3ec1515477557000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the flag setting on the new PDF so that it always uses w as the setter variable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8522 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8df06311b269503e0721d31861f86af7a560f3d 2018-01-09 05:59:17 +0000085d3f50af1eebbbaa47033513bccf03506ab3ecI changed the flag setting on the new PDF so that it always uses w as the settereditnew_pdf_main.F90mixing_length.F90pdf_utilities.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90fill_holes.F90Nc_Ncn_eqns.F90adg1_adg2_3d_luhar_pdf.F90surface_varnce_module.F90corr_varnce_module.F90mono_flux_limiter.F90ae9ae3e3dc30bd359760c86bee918562732d78591516236601000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8535 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 83f1ba5f428ff05246a994886955eca43d7cfe7b 2018-01-18 00:50:01 +0000ae9ae3e3dc30bd359760c86bee918562732d7859Changed many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803editfill_holes.F90editadg1_adg2_3d_luhar_pdf.F90editmixing_length.F90editpdf_utilities.F90editsurface_varnce_module.F90editNc_Ncn_eqns.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editcorr_varnce_module.F90editmono_flux_limiter.F90silhs_importance_sample_module.F906dc8b188c4c07fd53d28e21d4edbe39e5ab785f81516236601000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8535 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 83f1ba5f428ff05246a994886955eca43d7cfe7b 2018-01-18 00:50:01 +00006dc8b188c4c07fd53d28e21d4edbe39e5ab785f8Changed many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803editsilhs_importance_sample_module.F90interpolation.F900f8a60bbc1f530c8ff72359bad1438b0a5ee610f1516410520000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved binary search algorithm clubb:ticket:818 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8536 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8f8b516d82350d2ceff815e5fa1a153d1908f4ac 2018-01-20 01:08:40 +00000f8a60bbc1f530c8ff72359bad1438b0a5ee610fImproved binary search algorithm clubb:ticket:818editinterpolation.F90interpolation.F901cbe16fb05b01b1b4cf50b2c65deb6c5ceb310981516661233000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded warning messages to function binary_search clubb:ticket:818 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8537 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 55a8aaab680d5c3fc8c5d26479a4a3ec00dd25f0 2018-01-22 22:47:13 +00001cbe16fb05b01b1b4cf50b2c65deb6c5ceb31098Added warning messages to function binary_search clubb:ticket:818editinterpolation.F90Nc_Ncn_eqns.F90advance_xp2_xpyp_module.F90adg1_adg2_3d_luhar_pdf.F906f7801daba3f1a59ce0a4c8c41d6c871fe9595021516662112000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved unused variables causing warnings clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8538 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 447dda2b6f9f50dbdc0ead7ebb04c82173e5ad39 2018-01-22 23:01:52 +00006f7801daba3f1a59ce0a4c8c41d6c871fe959502Removed unused variables causing warnings clubb:ticket:803editNc_Ncn_eqns.F90editadg1_adg2_3d_luhar_pdf.F90editadvance_xp2_xpyp_module.F90pdf_closure_module.F90new_pdf_main.F9032948e0ff5444ecbf76708f75bd469a8bd2dbf271516688723000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the call to the new PDF so that Skrt and Skthl are intent INOUT variables. In the scenario that either one (or both) of these skewnesses are clipped in the new PDF, the updated values of Skrt and Skthl are passed out. This is necessary for the PDF parameter unit tests to work properly. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8539 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8c597babe3e55f0052ca3b582ed7f5aaf64a3e3e 2018-01-23 06:25:23 +000032948e0ff5444ecbf76708f75bd469a8bd2dbf27I updated the call to the new PDF so that Skrt and Skthl are intent INOUTeditpdf_closure_module.F90editnew_pdf_main.F90precipitation_fraction.F901911423245af862a7eb5e57f8e9bcc91b8af88d81516832610000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8545 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bf1ce0c334d2290189095d16da33b3298eea51be 2018-01-24 22:23:30 +00001911423245af862a7eb5e57f8e9bcc91b8af88d8Removed many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803editprecipitation_fraction.F90pdf_closure_module.F90d56edc54adcaea428260146d038a0f6893a6bcdc1516914489000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. This function calculates the <w'x'y'> term that I derived by integrating over the PDF. This function is used to calculate <w'rt'thl'>. Shortly, it will also be used to calculate <w'sclr'rt'> and <w'sclr'thl'>. This new calculation of <w'x'y'> allows for the PDF component correlations involving w to have a value other than 0. This generalizes the calculation for a PDF other than ADG1 or ADG2. CLUBB's calculation of wprtpthlp in pdf_closure is currently just used for statistical output. For ADG1, the old form and the new form of wprtpthlp produce the same result mathematically. However, owing to numerical roundoff, the results of the wprtpthlp in the new revision are BIT_CHANGING compared to the old revision. Otherwise, the results in GrADS output files for all other outputs from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:777 and clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8546 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 85a115499facd5577647492c2a1cc8c1419b2426 2018-01-25 21:08:09 +0000d56edc54adcaea428260146d038a0f6893a6bcdcI am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. Thiseditpdf_closure_module.F90pdf_closure_module.F90fd7aa20bb54009799ca395df136dc7703462c6981516914792000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI finished adding the units to the variable descriptions in function calc_wpxpyp_pdf. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8547 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 227018a956203820e0e6e3deb63d7064442e00ad 2018-01-25 21:13:12 +0000fd7aa20bb54009799ca395df136dc7703462c698I finished adding the units to the variable descriptions ineditpdf_closure_module.F90pdf_closure_module.F905c5313f5a0d4fc7b43a834ff3603f7ea4312d8b31516921136000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe calculation of higher-order scalar terms <w'^2^ sclr'>, <w'sclr'^2^>, <w'sclr'rt'>, and <w'sclr'thl'> are now generalzed for any PDF type. For ADG1, the old form and the new form of these scalar terms produce the same results mathematically. However, owing to numerical roundoff, the results of the calculations in the new revision are altered compared to the old revision. Since scalar calculations aren't output to standard stats, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8548 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1de02e2e856ebe28ccf7fa96e26e146a7c1de5fe 2018-01-25 22:58:56 +00005c5313f5a0d4fc7b43a834ff3603f7ea4312d8b3The calculation of higher-order scalar terms <w'^2^ sclr'>, <w'sclr'^2^>,editpdf_closure_module.F90parameters_tunable.F90parameter_indices.F90new_pdf_main.F90clubb_api_module.F90e6afdac47f9659f2f9d0616bf08f7f036ecde46f1517097814000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the tunable or adjustable parameters for the new PDF to CLUBB's list of tunable parameters. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8550 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c2d6df498f894b70febc252006b96502a6877d88 2018-01-28 00:03:34 +0000e6afdac47f9659f2f9d0616bf08f7f036ecde46fI added the tunable or adjustable parameters for the new PDF to CLUBB's listeditnew_pdf_main.F90editparameters_tunable.F90editparameter_indices.F90editclubb_api_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90numerical_check.F90pdf_closure_module.F90diagnose_correlations_module.F90new_pdf_main.F90advance_helper_module.F903a41920e95d798623cc40f94168d709e0654c81a1517876940000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed various warnings. Mainly by removing unused variables and commenting out unused procedures. See clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8567 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9fcc71ba9fe9e105b1180b1357a4a8513073d9fc 2018-02-06 00:29:00 +00003a41920e95d798623cc40f94168d709e0654c81aFixed various warnings. Mainly by removing unused variables and commenting out unused procedures. See clubb:ticket:803editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editnew_pdf_main.F90editpdf_closure_module.F90editnumerical_check.F90editclubb_api_module.F90editdiagnose_correlations_module.F90new_pdf_main.F904200fe360ce72c7377df0b0f5c80643f8d7497f01517981333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a line of code that limits the adjusted correlation of rt and theta-l at max_mag_correlation or -max_mag_correlation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8569 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b92144149facd0a7521fbcdba3baac2f3cd6a4c6 2018-02-07 05:28:53 +00004200fe360ce72c7377df0b0f5c80643f8d7497f0I am committing a line of code that limits the adjusted correlation of rt andeditnew_pdf_main.F90advance_clubb_core_module.F908dc0d797bb099c02aed79d9360606e549e23ff5e1518207624000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI implemented a new method to handle cumulus momentum fluxes. It approximates upthvp in terms of dthlm/dz. The old method, based on Skw, has been commented out. This should not change answers because l_use_buoy_mod_Km_zm = .false. For clubb:ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8577 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 97de0326fbb8c32763efecac95e27e8fe7204361 2018-02-09 20:20:24 +00008dc0d797bb099c02aed79d9360606e549e23ff5eI implemented a new method to handle cumulus momentum fluxes.editadvance_clubb_core_module.F90pdf_closure_module.F90Nc_Ncn_eqns.F90mono_flux_limiter.F903290e0eba4a72f8a7ec08d543e1105ab05cc85971519264565000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwitched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8581 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c47f680bc0e4fa7ba6a8989a2c15a9f3b1a3ece3 2018-02-22 01:56:05 +00003290e0eba4a72f8a7ec08d543e1105ab05cc8597Switched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804editmono_flux_limiter.F90editpdf_closure_module.F90editNc_Ncn_eqns.F90est_kessler_microphys_module.F90transform_to_pdf_module.F9044528e35e528c9ca3f597c12040d1eefbeb715fa1519264565000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwitched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8581 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c47f680bc0e4fa7ba6a8989a2c15a9f3b1a3ece3 2018-02-22 01:56:05 +000044528e35e528c9ca3f597c12040d1eefbeb715faSwitched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804edittransform_to_pdf_module.F90editest_kessler_microphys_module.F90anl_erf.F9067891bdb3d2819c6e890c4ea998b2c25fc64607a1519264797000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved file anl_erf.F90, it is no longer used git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8582 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 889fed911d2db4710e36ccacba8ee82ebc6cb85c 2018-02-22 01:59:57 +000067891bdb3d2819c6e890c4ea998b2c25fc64607aRemoved file anl_erf.F90, it is no longer useddeleteanl_erf.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90496afc42dfa487aa03127eaae63bef0ab026d5531519716378000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering the solution to the wp3 predictive equation to calculate the turbulent advection term and the turbulent production term independently. Mathematically, the code is still the same, but numerically, there will be round-off level differences between the old version and the new version. This revision is BIT_CHANGING. However, plotgen shows that lines for the old version and the new version overlap. The only cases that show any differences are the cases that are traditionally extremely sensitive. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8584 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 817ad4cce25c98568f8b5f7239e623c56505195d 2018-02-27 07:26:18 +0000496afc42dfa487aa03127eaae63bef0ab026d553I am altering the solution to the wp3 predictive equation to calculate theeditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90model_flags.F9058ac5319ebb7dbec2410e3dff1fa80c3999a9be51519792557000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed the problem with the wp3 budgets as a result of r8584. The budgets in the new revision now match (lines overlap) the budgets from r8583. I also added the l_use_explicit_turbulent_adv flag, which will be used to allow an explicit treatment of the turbulent advection term (for those equations where the turbulent advection term is calculated by integrating over the PDF). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8585 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 15e67de170ecb2fe141ad76cccf699e67883d1e0 2018-02-28 04:35:57 +000058ac5319ebb7dbec2410e3dff1fa80c3999a9be5I fixed the problem with the wp3 budgets as a result of r8584. The budgets ineditadvance_wp2_wp3_module.F90editmodel_flags.F90advance_xm_wpxp_module.F90advance_xp2_xpyp_module.F900908a71238f2462ae5f5b6b88c52689ba918e13f1519940856000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the names of the turbulent advection functions that are closed by the PDF (from integration over the PDF). The current functions have been altered to include ADG1 in their names, because the closure is done by assuming ADG1 is the PDF used. The results of this revision are an exact match to the results from the previous revision for all cases. However, yesterday's clubb:r8587 changed results without including BIT_CHANGING in the commit message, so that is being added here to reset the appropriate Bitten test. CLUBB Trac ticket reference: clubb:ticket:804. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8589 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 59983e00cb8d7b0d64af979ab088c411ff760466 2018-03-01 21:47:36 +00000908a71238f2462ae5f5b6b88c52689ba918e13fI altered the names of the turbulent advection functions that are closed byeditadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90advance_xp2_xpyp_module.F9054acce1ef42b67cfeff425f4b147f1a396d108f21519941671000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a couple comments about how the discretization of the turbulent advection terms are specific to the ADG1 PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8590 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6759e06e920dd46cbd647292b8f39a9f1fe53acd 2018-03-01 22:01:11 +000054acce1ef42b67cfeff425f4b147f1a396d108f2I added a couple comments about how the discretization of the turbulenteditadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F906bbed2efbc5d562a7f4aded4c5b0d5eadba2912b1519976572000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the function that sets up the implicit calculation of the wp3 turbulent advection term for the new PDF. This has not yet been interfaced with the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8591 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 782eb348eff41c4908448320d84b859108e3bcd6 2018-03-02 07:42:52 +00006bbed2efbc5d562a7f4aded4c5b0d5eadba2912bI added the function that sets up the implicit calculation of the wp3 turbulenteditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F9060e6f11dd819cafcfa5a4c6b1f7c3ed713d1f6541520044506000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a function that calculates the explicit form of the wp3 turbulent advection term to advance_wp2_wp3_module.F90. This option works for any PDF type. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8592 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3e9e64e2476e7196d4b35f62eabb21b4fb684a1f 2018-03-03 02:35:06 +000060e6f11dd819cafcfa5a4c6b1f7c3ed713d1f654I added a function that calculates the explicit form of the wp3 turbulenteditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90821c06bfa97f773d98c40085edb2645fd6e407be1520281347000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a function to calculate the turbulent advection of wpxp explicitly. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8593 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23fe1bf4037d21c1827c4ff9e46012a5f88090b5 2018-03-05 20:22:27 +0000821c06bfa97f773d98c40085edb2645fd6e407beI am adding a function to calculate the turbulent advection of wpxp explicitly.editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90advance_xp2_xpyp_module.F905234cd6880cd9f87b335bc9ad183df7bb74a59921520286920000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a function to calculate the turbulent advection of xp2 and xpyp explicitly. This option works for any PDF type. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8594 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 501c3fde5d6941d5913c78f7106c70681d33d9b6 2018-03-05 21:55:20 +00005234cd6880cd9f87b335bc9ad183df7bb74a5992I am adding a function to calculate the turbulent advection of xp2 and xpypeditadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90186420004c5507db0ee5040a91b25298e89ca8db1520310367000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI interfaced the wp3 explicit turbulent advection code with CLUBB. It is turned off by default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8595 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 985667d04c031b0b8feb554b6edb1260a3e94faf 2018-03-06 04:26:07 +0000186420004c5507db0ee5040a91b25298e89ca8dbI interfaced the wp3 explicit turbulent advection code with CLUBB. It iseditmodel_flags.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F9048ea03ac7ef620f41952bc774f75e0ee29a68f711520401533000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am interfacing the wpxp explicit turbulent advection option with the rest of the code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8596 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b092b91fbe367a6a286ce1eb60b65edb011e5157 2018-03-07 05:45:33 +000048ea03ac7ef620f41952bc774f75e0ee29a68f71I am interfacing the wpxp explicit turbulent advection option with the rest ofeditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F907d58047821a003b123d8388e646c29942dee2ab31520452845000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a small bug with the explicit turbulent advection option for wpxp. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8597 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f5b172c76dd5ad50fd0f97c306454957ccad410f 2018-03-07 20:00:45 +00007d58047821a003b123d8388e646c29942dee2ab3I fixed a small bug with the explicit turbulent advection option for wpxp.editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90ecda7108a1fdb1ec9d9ea3b17af63c07090db3d11520462369000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am interfacing the xp2/xpyp explicit turbulent advection term with CLUBB code. This works generally for any PDF type. CLUBB Trac ticket reference: CLUBB:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8598 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9af9946863af42ee030e3b4db8c5ae82b5708d49 2018-03-07 22:39:29 +0000ecda7108a1fdb1ec9d9ea3b17af63c07090db3d1I am interfacing the xp2/xpyp explicit turbulent advection term with CLUBB code.editadvance_xm_wpxp_module.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90new_pdf_main.F904c69f1b72a411929d718806f5cda271949ad9a431520551911000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the l_explicit_turbulent_adv_* family of flags to the new PDF, for some calculations don't need to be made when turbulent advection is being treated explicitly. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8599 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f477c736d61efd958d2442176fcdf3ca91f10bd2 2018-03-08 23:31:51 +00004c69f1b72a411929d718806f5cda271949ad9a43I added the l_explicit_turbulent_adv_* family of flags to the new PDF, for someeditnew_pdf_main.F90advance_clubb_core_module.F90pdf_closure_module.F90new_pdf_main.F90199de59e71871807cd93bcb4ebc98e799a85a3491520977857000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am packing up the implicit coefficients and explicit terms calculated by the new PDF into a derived type variable. That variable is passed back to advance_clubb_core so it can be used for such things as implicit turbulent advection of wp3, etc. This variable is also passed into the PDF parameter unit tests. There, in the future, it will be used for such things as double checking such things as: wp4 = coef_wp4_implicit * wp2^2^, etc. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8602 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c69c21bfdbfa0ab19a6545692b1682ecf34cdaba 2018-03-13 21:50:57 +0000199de59e71871807cd93bcb4ebc98e799a85a349I am packing up the implicit coefficients and explicit terms calculated by theeditadvance_clubb_core_module.F90editpdf_closure_module.F90editnew_pdf_main.F90model_flags.F90a89104550d9e46e533fa31bf3bd92c83677614b61520982937000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8603 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b8da02f687d55e0d56b7d1c141da50be60d06ada 2018-03-13 23:15:37 +0000a89104550d9e46e533fa31bf3bd92c83677614b6Made epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804editmodel_flags.F90new_pdf.F906d734fcb31a8876c05eae5b5ad869762c825603d1521052615000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90. A small bug was brought to light by last night's G unit test failure. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8604 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bfdba85d07239103cc20ee7cf1445976d442f95c 2018-03-14 18:36:55 +00006d734fcb31a8876c05eae5b5ad869762c825603dI made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90.editnew_pdf.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F901624553b92964a93b60b81bc053b580e43ebd2871521067112000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed interfacing the implicit form of the wp3 turbulent advection term for the new PDF with the rest of the CLUBB code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8605 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 33dfdbb42d1322be71e5011913a6a57fb2e0aa31 2018-03-14 22:38:32 +00001624553b92964a93b60b81bc053b580e43ebd287I have completed interfacing the implicit form of the wp3 turbulent advectioneditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F9042c5e04bcbd0387f44c6b3ac17b9ebbb787579f91521069079000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advection of wp3 at thermodynamic level 2 is based on wp4 at momentum levels 1 and 2. The value of wp4 at momentum level 1 is calculated by interpolating the values of wp4_zt that is calculated by integrating over the PDF at thermodynamic levels 1 and 2. However, the values that come from the call to pdf_closure at thermodynamic level 1 (the "below ground" level) are unreliable because the inputs are unreliable at that particular level. The best solution is to simply set wp4 at momentum level 1 to 0. This also matches the value of wp4 at the upper boundary. By default, CLUBB does not use explicit turbulent advection. However, the results are technically BIT_CHANGING because wp4 is still output to statistics. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8606 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e5488acd9de2a8e9219a27ff57c3cba664c8826c 2018-03-14 23:11:19 +000042c5e04bcbd0387f44c6b3ac17b9ebbb787579f9When the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advectioneditadvance_clubb_core_module.F90Skx_module.F90f645a7fa5b5eab7ab36b427730226ba206db0d6a1521147148000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI cleaned up the Skx_module and added an additional function, xp3_LG_2005_ansatz, which calculates xp3 using Skx from the LG 2005 ansatz. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8608 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 709538fce7534b77ec33ae37bbb69353379f7672 2018-03-15 20:52:28 +0000f645a7fa5b5eab7ab36b427730226ba206db0d6aI cleaned up the Skx_module and added an additional function,editSkx_module.F90advance_clubb_core_module.F90model_flags.F90Skx_module.F900f015a9eca1f27ecd084f20d80713c35e94db7c91521151331000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the calculation of scalar skewness. It was being set to 0, causing problems with the new PDF. I corrected the bug and I also made the scalar skewness code a little more user friendly. It is now controlled by a flag, l_use_xp3_LG_2005_ansatz, which is set to true by default. In the default ADG1 code, the LG 2005 ansatz is not used interactively. It only outputs to stats. This commit is BIT_CHANGING only because statistics change. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8610 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d86300fff06c4ae2f1d5673e6a0e1c22cf8566a6 2018-03-15 22:02:11 +00000f015a9eca1f27ecd084f20d80713c35e94db7c9I fixed a bug in the calculation of scalar skewness. It was being set to 0,editSkx_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90bce822492723d4d4b56113dc49125951ee4f004d1521152411000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the location of the LG 2005 ansatz to calculate xp3 because it would be more helpful for testing purposes before the first call to pdf_closure_driver (which is the call we use). In default CLUBB, this affects only statistics. However, this change is technically BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8611 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3a1c774648552b4fb8b0d3e4799bd460890f8b3b 2018-03-15 22:20:11 +0000bce822492723d4d4b56113dc49125951ee4f004dI moved the location of the LG 2005 ansatz to calculate xp3 because it would beeditadvance_clubb_core_module.F90advance_clubb_core_module.F90a85dc94233b2feac1f7631b66fc16268f1bd47111521251292000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI reverted clubb:r8611 because (1) having the code in the other location introduced a bug, and (2) upon further review, it just makes more sense in this location, and is more consistent with the rest of the code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8614 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71881434bb65be73688a08b4f88bd556f1733a6b 2018-03-17 01:48:12 +0000a85dc94233b2feac1f7631b66fc16268f1bd4711I reverted clubb:r8611 because (1) having the code in the other locationeditadvance_clubb_core_module.F90advance_xp2_xpyp_module.F905eb6a87a6ff59bcc68d56a668a1fddf396f07a4a1521502260000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new function, term_ta_new_pdf_lhs, to advance_xp2_xpyp_module.F90. This function will handle the implicit turbulent advection for xp2 and the implicit portion of the semi-implicit turbulent advection for xpyp for the new PDF. This code has not yet been interfaced with the rest of CLUBB. The previous commit, r8614, changed statistical results, but I forgot to put a BIT_CHANGING in the log message, so here it is. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8615 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4a56ec579a61738b9a433cadb76b95ea2e234052 2018-03-19 23:31:00 +00005eb6a87a6ff59bcc68d56a668a1fddf396f07a4aI have added a new function, term_ta_new_pdf_lhs, toeditadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F901a64aba9e0965e5ca2be2ae42114ecfd18324a881521603467000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have linked the implicit turbulent advection code for rtp2 and thlp2 to the rest of the CLUBB code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8616 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5c892b7b825cfdea679a968ea139fa8e360c758a 2018-03-21 03:37:47 +00001a64aba9e0965e5ca2be2ae42114ecfd18324a88I have linked the implicit turbulent advection code for rtp2 and thlp2 to theeditadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_xp3_module.F9032ef7b3f76f1eeb30646cd50c0c3f6d0fd9138151521949587000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new file that has two options for handling the xp3 term for scalars (thlp3, rtp3, and sclrp3). Both options are based on the d(xp3)/dt equation. One option predicts xp3 with the turbulent production, accumulation, and turbulent dissipation terms. The other option uses a steady-state approximation (dxp3/dt = 0) and calculates xp3 from the same three terms, since xp3 is found in the turbulent dissipation term. This has not yet been interfaced with the rest of the CLUBB code. When it is, this code will be one option for calculating xp3, with the other option being the ansatz. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8618 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7be02a8f18fcc08247c90045078ea95a36bc041e 2018-03-25 03:46:27 +000032ef7b3f76f1eeb30646cd50c0c3f6d0fd913815I have added a new file that has two options for handling the xp3 term foraddadvance_xp3_module.F90advance_xp3_module.F90advance_clubb_core_module.F90model_flags.F9036fc76e515e1809b0c2db8c8acbb6caf6c2bc5e41521954033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have interface the new xp3 code to the rest of CLUBB. It can be turned on with the l_advance_xp3 flag in model_flags.F90. It is turned off by default, which means that default CLUBB still continues to use the ansatz to calculate xp3. The results in GrADS output files from this revision are and exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8619 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b94ac8fb33138049c067c06d5aeae2c4279510b 2018-03-25 05:00:33 +000036fc76e515e1809b0c2db8c8acbb6caf6c2bc5e4I have interface the new xp3 code to the rest of CLUBB. It can be turned oneditadvance_xp3_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp3_module.F90817b7d5301840ee5fa5fe98b74b066903a356caa1522268903000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a driver level subroutine for the new advance xp3 code. This will make it easier to add xp3 budget statistics. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8622 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d0f2a8e83ed686b15cee05cecf437abc9528da86 2018-03-28 20:28:23 +0000817b7d5301840ee5fa5fe98b74b066903a356caaI added a driver level subroutine for the new advance xp3 code. This will makeeditadvance_clubb_core_module.F90editadvance_xp3_module.F90advance_xp3_module.F90stats_variables.F90stats_zt_module.F907d820dc808911b68c5bc7b3bc79824426e2e6beb1522276133000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added budget stats for rtp3 and thlp3 to CLUBB. Since this commit adds statistics, it is technically BIT_CHANGING. However, the results in GrADS zm, sfc, etc. output files from this revision are an exact match to the results in the same GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8624 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1f320b0d32ee3c7f42a22465d991fcfa69645df 2018-03-28 22:28:53 +00007d820dc808911b68c5bc7b3bc79824426e2e6bebI added budget stats for rtp3 and thlp3 to CLUBB.editstats_zt_module.F90editadvance_xp3_module.F90editstats_variables.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90ddc181ff3266df2b2d9620d409d13c09cab4d2bd1523057575000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding code that allows the turbulent advection of wpxp to be treated semi-implicitly for the new PDF. The wpxp code was already split into two sections based on an "if" statement. One section uses a single left-hand side, and the other section uses three left-hand sides (for wprtp, wpthlp, and wpsclrp). The new code has been added to the section with three left-hand sides. For the section with a single left-hand side, dummy variables are passed instead. The default is to call the single left-hand side, and it will remain that way. When the single left-hand side is called, the new PDF must use explicit turbulent advection. However, since the code was already there for the section with three left-hand sides, it made sense to enter the semi-implicit code in that section. This way, for the new PDF, the semi-implicit turbulent advection can be compared to the explicit turbulent advection to see if there is any downgrade in results. For ADG1, the implicit turbulent advection and the explicit turbulent advection produce very similar results. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8629 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71546e35186628f4a7290aac600d51d946fe5eda 2018-04-06 23:32:55 +0000ddc181ff3266df2b2d9620d409d13c09cab4d2bdI am adding code that allows the turbulent advection of wpxp to be treatededitadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90stats_type_utilities.F90diagnose_correlations_module.F90grid_class.F90setup_clubb_pdf_params.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90error_code.F90pdf_closure_module.F90corr_varnce_module.F90precipitation_fraction.F90numerical_check.F90pos_definite_module.F90gmres_wrap.F90parameters_tunable.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90stats_clubb_utilities.F90interpolation.F903f1dc0ded1ee5f8b5885043aaf605e2233d04d2e1524171137000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8635 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0864df227743b27686b96e826991a1bf7fd8c18b 2018-04-19 20:52:17 +00003f1dc0ded1ee5f8b5885043aaf605e2233d04d2eRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code.editadvance_clubb_core_module.F90editlapack_wrap.F90editsurface_varnce_module.F90editadvance_xp2_xpyp_module.F90editnumerical_check.F90editstats_clubb_utilities.F90editgrid_class.F90editstats_type_utilities.F90editmixing_length.F90editpdf_closure_module.F90editclubb_api_module.F90editsetup_clubb_pdf_params.F90editmono_flux_limiter.F90editparameters_tunable.F90editdiagnose_correlations_module.F90editfill_holes.F90editadvance_windm_edsclrm_module.F90editerror_code.F90editpos_definite_module.F90editgmres_wrap.F90editprecipitation_fraction.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editinterpolation.F90editcorr_varnce_module.F90est_kessler_microphys_module.F90silhs_importance_sample_module.F90latin_hypercube_driver_module.F9030f9c5873c2acf233a9cf8ca3ccfb72ad740ae8c1524171137000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8635 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0864df227743b27686b96e826991a1bf7fd8c18b 2018-04-19 20:52:17 +000030f9c5873c2acf233a9cf8ca3ccfb72ad740ae8cRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code.editest_kessler_microphys_module.F90editsilhs_importance_sample_module.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90lapack_wrap.F90pdf_closure_module.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90771489f3d5884d9c350e7027e61919193798dda71524267660000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVarious small comment removals and returned some functionality to api interface clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8637 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fac7d1bad2fad4ffdc0012c6bd39c48dcb299c46 2018-04-20 23:41:00 +0000771489f3d5884d9c350e7027e61919193798dda7Various small comment removals and returned some functionality to api interface clubb:ticket:800editsurface_varnce_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90editlapack_wrap.F90editadvance_windm_edsclrm_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90numerical_check.F90e825a918920d5b8f6477c6fac06251a72a67f51b1524613862000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA variable found to be less than zero now only gives a warning rather than setting an error code. Some fatal error checks also changed from debug level 2 to 0 clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8640 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0a7c278ab999293009a3e48ffaa63e7c5e73834e 2018-04-24 23:51:02 +0000e825a918920d5b8f6477c6fac06251a72a67f51bA variable found to be less than zero now only gives a warning rather than setting an error code. Some fatal error checks also changed from debug level 2 to 0 clubb:ticket:800editnumerical_check.F90stats_clubb_utilities.F90advance_clubb_core_module.F90stats_zm_module.F90stats_variables.F90cd544c579e1b8dd3405333d72763477ac77d7d571524689472000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is the first part of a two-part change. I am updating plotgen plots so that they contain wpthvp followed by the contribution of cloud water to wpthvp, wp2thvp followed by the contribution of cloud water to wp2thvp, thlpthvp followed by the contribution of cloud water to thlpthvp, and rtpthvp followed by the contribution of cloud water to rtpthvp. In order to plot the contribution of cloud water, a variable named rc_coef is needed. Previously, this had been output on momentum levels so that it could be used to calculate the contribution of cloud water to wpthvp, thlpthvp, and rtpthvp. However, wp2thvp (and wp2rcp) are thermodynamic-level variables, so the contribution of cloud water to wp2thvp couldn't be plotted because plotgen can't handle variables from two different files (zm and zt) in the same equation. In order to plot everything, rc_coef needs to be output on both momentum levels and thermodynamic levels. As a first step, I have renamed the previous rc_coef as rc_coef_zm. The variable rc_coef is calculated based mainly on constants. However, the does contain exner, which is a thermodynamic-level variable. Additionally, it is calculated as part of pdf_closure, which is called on thermodynamic levels. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. The variable name rc_coef has been changed to rc_coef_zm in all GrADS _zm *.ctl files. CLUBB Trac ticket reference: clubb:ticket:824. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8641 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 09c06d8ab9627dd30252246f78f48144a01e524c 2018-04-25 20:51:12 +0000cd544c579e1b8dd3405333d72763477ac77d7d57This is the first part of a two-part change. I am updating plotgen plots soeditstats_clubb_utilities.F90editadvance_clubb_core_module.F90editstats_zm_module.F90editstats_variables.F90pdf_closure_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F90stats_zm_module.F90stats_variables.F90stats_zt_module.F9059d3974bbca99650fa4ed55e6572ba5664b732e71524715962000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn part 2 of this two part commit, I have added rc_coef to the list of statistical output variables on thermodynamic levels. This will allow plots of the contribution of cloud water to wp2thvp. Since this adds new statistics, this commit is BIT_CHANGING. CLUBB Trac ticket reference:clubb:ticket:824. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8642 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 85cb66d509812298fdc043933fb1c2ee2bf9eadc 2018-04-26 04:12:42 +000059d3974bbca99650fa4ed55e6572ba5664b732e7In part 2 of this two part commit, I have added rc_coef to the list ofeditstats_zt_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editstats_zm_module.F90editstats_variables.F90advance_wp2_wp3_module.F90gmres_wrap.F90advance_clubb_core_module.F90numerical_check.F90a53242d5e14b0d2cdc77956a1b7dc25ba0bee2171524785741000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVarious debug checks added/improved. Negative value checks changed back to throw fatal errors. Parameterization check changes to disclude thermodynamic variables at grid level 1 clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8645 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ea6c90ebb091e0edaa253a485bcb0fe74b04e9a2 2018-04-26 23:35:41 +0000a53242d5e14b0d2cdc77956a1b7dc25ba0bee217Various debug checks added/improved. Negative value checks changed back to throw fatal errors. Parameterization check changes to disclude thermodynamic variables at grid level 1 clubb:ticket:800editgmres_wrap.F90editnumerical_check.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90numerical_check.F90534a0c72de8873a5009bf671530b47f0d49206f91524870541000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCheck negative no longer assumes array sizes are gr%nz, this should fix the SAM-CLUBB-SILHS error in the nightly tests clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8648 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c5367d31f8d14bf63fe8db9d739ce3556d199437 2018-04-27 23:09:01 +0000534a0c72de8873a5009bf671530b47f0d49206f9Check negative no longer assumes array sizes are gr%nz, this should fix the SAM-CLUBB-SILHS error in the nightly tests clubb:ticket:800editnumerical_check.F90numerical_check.F905c4a849bdb5f53fcf9dfc89fd033336c1efbfc8d1525220380000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduI'm pretty sure this will fix the check negative issues this time, fortran has some lacking features when it comes to arrays clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8650 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e6bfd050584076696a51885cd3617afab1240f2 2018-05-02 00:19:40 +00005c4a849bdb5f53fcf9dfc89fd033336c1efbfc8dI'm pretty sure this will fix the check negative issues this time, fortran has some lacking features when it comes to arrays clubb:ticket:800editnumerical_check.F90advance_clubb_core_module.F905594fe9e9fbe5678de31813cee26b5cb9335667e1525220543000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged calls to parameterization check to work with the new check negative implementation clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8651 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ecec6a8815e819b2b51add31db0d3f4995a02a81 2018-05-02 00:22:23 +00005594fe9e9fbe5678de31813cee26b5cb9335667eChanged calls to parameterization check to work with the new check negative implementation clubb:ticket:800editadvance_clubb_core_module.F90advance_clubb_core_module.F900838560e573a27fecf5357fc654ad1e0d3097e6e1525220627000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.edu git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8652 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b5b67470d5464025531cc981f1b4cd8906fc5450 2018-05-02 00:23:47 +00000838560e573a27fecf5357fc654ad1e0d3097e6eeditadvance_clubb_core_module.F90advance_clubb_core_module.F90710b86bb2771a3ea99f8f49d70eee9f0d7a9fa981525288786000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved rtm(5) = -1 line, it was a test accidentally left in and caused many nightly tests to fail clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8653 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bb388ad7e3f6068c8a15c50cb53ff038dd98d1f 2018-05-02 19:19:46 +0000710b86bb2771a3ea99f8f49d70eee9f0d7a9fa98Removed rtm(5) = -1 line, it was a test accidentally left in and caused many nightly tests to fail clubb:ticket:800editadvance_clubb_core_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90numerical_check.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90surface_varnce_module.F90mono_flux_limiter.F907819819232585aa60a22328a59ee1678e1a692f21525383794000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged error checking if statements to check for equality to clubb_fatal_error rather than inequality to clubb_no_error, makes them more readable clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8656 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7594b96ec54ad94de28f8ba06d5508ffcbbfd66 2018-05-03 21:43:14 +00007819819232585aa60a22328a59ee1678e1a692f2Changed error checking if statements to check for equality to clubb_fatal_error rather than inequality to clubb_no_error, makes them more readable clubb:ticket:800editpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editnumerical_check.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editsurface_varnce_module.F90editmixing_length.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90lapack_wrap.F9013831ab3cc6c757038004f5404bb16b6e601d99f1525386155000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed unused variable warnings related to error code changes git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8657 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 178198f65006fe50b1b5f18b7178987d2d1a3c0b 2018-05-03 22:22:35 +000013831ab3cc6c757038004f5404bb16b6e601d99fFixed unused variable warnings related to error code changeseditlapack_wrap.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90pdf_closure_module.F90df6f4296f21568086b513f923063d7df9a3aced31525476958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am generalizing the wprcp, wp2rcp, rtprcp, and thlprcp equations to account for the PDF component correlation of w and rt and the PDF component correlation of w and theta-l. In regards to the PDF transformation, this accounts for the PDF component correlation of w and chi and the PDF component correlation of w and eta. For the default ADG1 code, the plotgen results overlap for all cases except for the most sensitive ones -- ARM 97, TWP-ICE, and MC3E. For ADG1, the calculations are mathematically the same, but numerical roundoff errors account for any changes, making this commit BIT_CHANGING. CLUBB Trac ticket references: clubb:ticket:777 and clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8659 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a7259659c0a879df9d5e32bd2d3087328bb0304a 2018-05-04 23:35:58 +0000df6f4296f21568086b513f923063d7df9a3aced3I am generalizing the wprcp, wp2rcp, rtprcp, and thlprcp equations to accounteditpdf_closure_module.F90advance_clubb_core_module.F90error_code.F908da2c418b38a9dcfed11d90ee4d963a6c7c727261525715833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded error header functionality. Using the err_header character array from error_code in a write statment will print out either the thread number or process ID along with CLUBB -- ERROR: . This is mainly to keep track of error messages is multithreaded scenarios clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8660 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1f3a5d4af18e3ebf53f8b821e413b69d5f1f3381 2018-05-07 17:57:13 +00008da2c418b38a9dcfed11d90ee4d963a6c7c72726Added error header functionality. Using the err_header character array from error_code in a write statment will print out either the thread number or process ID along with CLUBB -- ERROR: . This is mainly to keep track of error messages is multithreaded scenarios clubb:ticket:800editerror_code.F90editadvance_clubb_core_module.F90pdf_closure_module.F900ac6d77e9e485ba1860339e34ee86c2dcabd51371525809195000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn r8659, I accidentally overwrote some code. This commit restores the prior version. CLUBB Trac ticket reference: clubb:ticket:800. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8661 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a67cb39ea413c949b2a3432fd5a4d67517d58c0e 2018-05-08 19:53:15 +00000ac6d77e9e485ba1860339e34ee86c2dcabd5137In r8659, I accidentally overwrote some code. This commit restores the prioreditpdf_closure_module.F90pdf_closure_module.F907d6bf061c7354f5a1bf4d48df53aef4d63158ef41525809252000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSigh git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8662 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e94a485df2a451e08b95d4e83532855d4941de1 2018-05-08 19:54:12 +00007d6bf061c7354f5a1bf4d48df53aef4d63158ef4Sigheditpdf_closure_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F900a5bae799b090651a0fbaec135c784eb1e43af791525983695000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded clubb debug level checks to error checking statements clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8664 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d913e4e936096a1222f3571a31802d39f8029f0b 2018-05-10 20:21:35 +00000a5bae799b090651a0fbaec135c784eb1e43af79Added clubb debug level checks to error checking statements clubb:ticket:800editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editsurface_varnce_module.F90editmixing_length.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editmono_flux_limiter.F90precipitation_fraction.F90advance_clubb_core_module.F90clubb_api_module.F90output_netcdf.F90csr_matrix_module.F90grid_class.F90stats_clubb_utilities.F90pdf_parameter_module.F90setup_clubb_pdf_params.F908dd2efb7b881a9decacf6ab60b8cd4595fb795d61526086676000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged many stop commands to return commands and added more err_code checks clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8665 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4e6f274e0940c80fd0fdac7c7887f8b6138beeb2 2018-05-12 00:57:56 +00008dd2efb7b881a9decacf6ab60b8cd4595fb795d6Changed many stop commands to return commands and added more err_code checks clubb:ticket:800editsetup_clubb_pdf_params.F90editgrid_class.F90editadvance_clubb_core_module.F90editoutput_netcdf.F90editcsr_matrix_module.F90editstats_clubb_utilities.F90editprecipitation_fraction.F90editclubb_api_module.F90editpdf_parameter_module.F90clubb_api_module.F90931223883ea8311dd6b46251763db82296b8f6171526427162000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted api changes that broke SAM and WRF git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8669 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5cb5ad6b721ddb72d4c4261a5c538f769b31f4c8 2018-05-15 23:32:42 +0000931223883ea8311dd6b46251763db82296b8f617Reverted api changes that broke SAM and WRFeditclubb_api_module.F90new_pdf.F90new_pdf_main.F909fb1e0ea6977aab5c009b67ff7f2d6a3542974791526933960000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the semi-implicit formulation of wprtpthlp, which is the turbulent advection term in the rtpthlp predictive equation. This form is specific to the new PDF. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8674 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3ee9e6dc10b2a96e93f73731abc0e689e4f5285d 2018-05-21 20:19:20 +00009fb1e0ea6977aab5c009b67ff7f2d6a354297479I am adding the semi-implicit formulation of wprtpthlp, which is the turbulenteditnew_pdf_main.F90editnew_pdf.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90stats_zt_module.F903edb1f2cd144c0c6f10c9db65c8e899beafaff201527015165000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding output statistics for the implicit and semi-implicit coefficients and terms that are used for wp4, wprtp2, wpthlp2, wp2rtp, wp2thlp, and wprtpthlp in the CLUBB predictive equation set. When the ADG1 PDF is used or when turbulent advection is handled explicitly, a value of 0 is simply output for these fields. However, new fields are now added to the *_zt and *_zm statistical output files, making this change BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8678 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: aa2d2842b3845f5fa9ee66237db4e1fc18d65cc1 2018-05-22 18:52:45 +00003edb1f2cd144c0c6f10c9db65c8e899beafaff20I am adding output statistics for the implicit and semi-implicit coefficientseditadvance_wp2_wp3_module.F90editstats_variables.F90editadvance_xp2_xpyp_module.F90editstats_zt_module.F90editadvance_xm_wpxp_module.F90editstats_zm_module.F90new_pdf.F90new_pdf_main.F90a9341697c80d2668d3079c9ae142e1a2ebd70b431527015385000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI corrected the units on a couple of implicit coefficients. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8679 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cf7e5004ede5dd3c7bdcd925f3cb200af658b317 2018-05-22 18:56:25 +0000a9341697c80d2668d3079c9ae142e1a2ebd70b43I corrected the units on a couple of implicit coefficients.editnew_pdf.F90editnew_pdf_main.F90advance_xm_wpxp_module.F90ce15cc8f9aae4e22a3bddf4992f02f34d723cbd11527204952000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8685 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ec7f561c61f350ab4ec77e9c5953584ae8c3a2ad 2018-05-24 23:35:52 +0000ce15cc8f9aae4e22a3bddf4992f02f34d723cbd1I fixed a bug.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90interpolation.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90lapack_wrap.F9082b8e1b410e1f524cb976f0261acb1b6e199af761527210440000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved failure_test cases from input/case_setups, they neither work properly nor are needed anymore. Added test_fatal_error_handling.bash script which tests for various errors defined by an identifier in the code, more description available in the bash file. Also added more descriptive error output to some parts of code. This change focuses only on output and comments and is BIT IDENTICAL clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8688 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 91ac88eb9164cd49ca80fc713029c1bd4b6ff40e 2018-05-25 01:07:20 +000082b8e1b410e1f524cb976f0261acb1b6e199af76Removed failure_test cases from input/case_setups, they neither work properly nor are needed anymore. Added test_fatal_error_handling.bash script which tests for various errors defined by an identifier in the code, more description available in the bash file. Also added more descriptive error output to some parts of code. This change focuses only on output and comments and is BIT IDENTICAL clubb:ticket:800editinterpolation.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editlapack_wrap.F90editadvance_wp2_wp3_module.F90advance_xm_wpxp_module.F905a5297f9ab35944a45cf8b8e9391c0a861b3905f1527294838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved reference to run_type 'failure_test' as it no longer exists. Added more description to fatal errors produced by calls to xm_wpxp_solve. This change is BIT IDENTICAL clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8690 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23cc4aa2bc4aa6c27d508bad874a6818b4e9f158 2018-05-26 00:33:58 +00005a5297f9ab35944a45cf8b8e9391c0a861b3905fRemoved reference to run_type 'failure_test' as it no longer exists. Added more description to fatal errors produced by calls to xm_wpxp_solve. This change is BIT IDENTICAL clubb:ticket:800editadvance_xm_wpxp_module.F90stats_clubb_utilities.F909ceaa37d3cc78dbf56569a7d4a08768352d0b01e1527790022000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug with the CLUBB tuner. Variables that were allocated at the start of each CLUBB run were not being deallocated, causing the tuner to crash. I also made some of the code a little bit more easily readable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8695 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bce461a95c155074c37ddaf67a359722684b032 2018-05-31 18:07:02 +00009ceaa37d3cc78dbf56569a7d4a08768352d0b01eI am fixing a bug with the CLUBB tuner. Variables that were allocated at theeditstats_clubb_utilities.F90advance_wp2_wp3_module.F90Skx_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90numerical_check.F907a2fad444aefaa42626b4f4f1ba874ad6a9ac9341527792428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCompleted the list of variables that get reported from errors within advance_wp2_wp3 and advance_xm_wpxp. Also added a check that outputs an error message when T_in_K is less than 200K in the lowest 10 grid levels, this check is done in subroutine parameterization_check. clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8697 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 53e78bde17cf1e7916cffca0c52828aea6a78804 2018-05-31 18:47:08 +00007a2fad444aefaa42626b4f4f1ba874ad6a9ac934Completed the list of variables that get reported from errors within advance_wp2_wp3 and advance_xm_wpxp. Also added a check that outputs an error message when T_in_K is less than 200K in the lowest 10 grid levels, this check is done in subroutine parameterization_check. clubb:ticket:800editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editSkx_module.F90editnumerical_check.F90fill_holes.F90advance_clubb_core_module.F90numerical_check.F90e5907f835fe697746c161b04ef63ddf67c834a4f1528225011000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade all debug levels produce the same output, see clubb:ticket:823 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8700 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e0155881872223e0415c76a109ea31b51a221779 2018-06-05 18:56:51 +0000e5907f835fe697746c161b04ef63ddf67c834a4fMade all debug levels produce the same output, see clubb:ticket:823editfill_holes.F90editnumerical_check.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90pdf_parameter_module.F90new_pdf_main.F90ac9622bf0cc09cc316434886e129bb7314d08a111528401879000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am moving type variable implicit_coefs_terms from new_pdf_main.F90 to pdf_parameter_module.F90. The goal is to use this type variable for all PDF types, not just for the new PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8702 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e2a336674b0425021f90e328156effd55497e67b 2018-06-07 20:04:39 +0000ac9622bf0cc09cc316434886e129bb7314d08a11I am moving type variable implicit_coefs_terms from new_pdf_main.F90 toeditadvance_xm_wpxp_module.F90editpdf_parameter_module.F90editpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editnew_pdf_main.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90parameters_tunable.F907d18837476666806239c9825cf4b67e6f9a23c181529024997000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8705 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9cedfb7d28f1ed37f746348dbb9082075ebe26ce 2018-06-15 01:09:57 +00007d18837476666806239c9825cf4b67e6f9a23c18Modified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802editparameters_tunable.F90parameters_tunable.F90eabe48e0df1cdb0f1e235c23a9078a4afac1d17e1529121760000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8706 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 02a68858d0eb8c5ae738be483dd9ff80835de531 2018-06-16 04:02:40 +0000eabe48e0df1cdb0f1e235c23a9078a4afac1d17eAdded checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802editparameters_tunable.F90numerical_check.F90f8e787b9279acee257f8f5239f4d59565a1a31b01529122288000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the thlm out of bounds error on clubb:ticket:828 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8707 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b66209934392d16efc4dc1e3787cb8e0301f1dd1 2018-06-16 04:11:28 +0000f8e787b9279acee257f8f5239f4d59565a1a31b0This should fix the thlm out of bounds error on clubb:ticket:828editnumerical_check.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90pdf_closure_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90new_pdf_main.F9059dd7cde986a3b07374d847937800451514f23781529347561000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the name of type variable new_pdf_implct_coefs_terms to pdf_implicit_coefs_terms in order to help generalize this variable for use with any type of PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8708 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 06cc2f631557b8f9b584c2260843ca3aef8d1a61 2018-06-18 18:46:01 +000059dd7cde986a3b07374d847937800451514f2378I changed the name of type variable new_pdf_implct_coefs_terms toeditadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editpdf_closure_module.F90editadvance_wp2_wp3_module.F90editnew_pdf_main.F90numerical_check.F903a824d458cbfb497e1b920ed3f9b1128924210f61529359496000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8709 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f413987ba6cb3288915c9ee945dbb23ca7ca13e4 2018-06-18 22:04:56 +00003a824d458cbfb497e1b920ed3f9b1128924210f6Changed T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828editnumerical_check.F90advance_xp2_xpyp_module.F90b1accae6cdf52d3613804d3e868dd2f2259ae9d81529937463000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a flag option to clip the (large, negative) effects of microphysics on rtp2 and thlp2. Right now, this flag is turned off by default, so the results remain the same. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8712 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56dcb3ae49ea059027553d6236b35374df61ab73 2018-06-25 14:37:43 +0000b1accae6cdf52d3613804d3e868dd2f2259ae9d8I added a flag option to clip the (large, negative) effects of microphysics oneditadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90clip_explicit.F90313ad512a4c8fdc9f1e171ebb05a4ecf01b749d41529947245000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a flag option to calculate the minimum threshold for xp2 (rtp2 and thlp2) based on maintaining an overall correlation of w and x that falls between -max_mag_correlation and max_mag_correlation. Right now, this flag is turned off by default, so the results remain the same. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8713 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 827263c713117eec5b4f415f3fab91e7aacd751e 2018-06-25 17:20:45 +0000313ad512a4c8fdc9f1e171ebb05a4ecf01b749d4I added a flag option to calculate the minimum threshold for xp2 (rtp2 andeditadvance_xp2_xpyp_module.F90editclip_explicit.F90advance_xp2_xpyp_module.F90clip_explicit.F90constants_clubb.F90f41025c81a0ff30e00667a02e0060a989d745acc1530036019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a special max magnitude correlation for fluxes wprtp and wpthlp. This variable is called max_mag_correlation_flux and it is set to 0.99 by default (the same value as max_mag_correlation) so results remain the same for now. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8714 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 820d0ca1cfb24d472ea0df14d9773a300f7838ca 2018-06-26 18:00:19 +0000f41025c81a0ff30e00667a02e0060a989d745accI added a special max magnitude correlation for fluxes wprtp and wpthlp. Thiseditadvance_xp2_xpyp_module.F90editconstants_clubb.F90editclip_explicit.F90parameters_tunable.F9075959a494104447dc36320e08168100f868558dc1530242220000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. This commit is bit identical execpt for tuning results, see clubb:ticket:802 for a bunch more information git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8716 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cb3732ec186d149883164709deaead448d995038 2018-06-29 03:17:00 +000075959a494104447dc36320e08168100f868558dcMade better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. This commit is bit identical execpt for tuning results, see clubb:ticket:802 for a bunch more informationeditparameters_tunable.F90advance_wp2_wp3_module.F90parameters_tunable.F90constants_clubb.F90e3d58ba763369692018fa4a1140ad436623b48401530559519000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit sets C8b=0.02, changes the non-linear damping on wp3 from Skw^4 to Skw^2, sets C11b=C11, and relaxes Skw_max_mag to 10. These changes are designed to reduce the clipping on wp3 (although the clipping is not eliminated), and to allow greater skewness in cumulus cases without altering the stratocumulus cases. This offers opportunities to increase the contrast between shallow cumulus and stratocumulus in global simulations. This commit is BIT_CHANGING. For clubb:ticket:817. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8719 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3b9f880a412da4e3b527cba7a587fdce2c14e3e 2018-07-02 19:25:19 +0000e3d58ba763369692018fa4a1140ad436623b4840This commit sets C8b=0.02, changes the non-linear damping on wp3editadvance_wp2_wp3_module.F90editconstants_clubb.F90editparameters_tunable.F90advance_wp2_wp3_module.F90parameter_indices.F90model_flags.F90clip_explicit.F90constants_clubb.F90Skx_module.F90parameters_tunable.F90parameters_model.F9010a9678f87e1c19f9d20482b6d9e8b9bb86057fa1530836881000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded a flag and moved Skw_max_mag from constants to parameters, this allows the changes made in commit clubb:r8719 to be reverted by modifying the configuration flags and the tunable parameters list, see clubb:ticket:829 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8722 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4a4f3e30a724310cb2342bcd8f99792e63e7922c 2018-07-06 00:28:01 +000010a9678f87e1c19f9d20482b6d9e8b9bb86057faAdded a flag and moved Skw_max_mag from constants to parameters, this allows the changes made in commit clubb:r8719 to be reverted by modifying the configuration flags and the tunable parameters list, see clubb:ticket:829editSkx_module.F90editclip_explicit.F90editadvance_wp2_wp3_module.F90editparameter_indices.F90editmodel_flags.F90editparameters_model.F90editconstants_clubb.F90editparameters_tunable.F90turbulent_adv_pdf.F90cee383b89783f8dba35ea28b766ec787f08691d41530917037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a general purpose function for the turbulent advection of CLUBB's predictive variances and covariances. This is for the momentum-level predictive fields that handle turbulent advection by integrating over the PDF. Regardless of PDF type, all of these turbulent advection terms can be written in the following form: d<x'y'>/dt = - (1/rho_ds) * d( rho_ds * <w'x'y'> ) / dz; where <w'x'y'> = coef_wpxpyp_implicit * <x'y'> + term_wpxpyp_explicit. This allows for one set of turbulent advection functions that can be reused for multiple variables, for any PDF type, and even for the explicit turbulent advection option. This allows for a much simpler flow of coding, and also has the perk of expanding the "upwind" turbulent advection option to other PDF types (besides ADG1), without adding a whole bunch of specialty functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8724 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dd55be7bcda2c95e11dc19ca4b00a5ed5b07e013 2018-07-06 22:43:57 +0000cee383b89783f8dba35ea28b766ec787f08691d4I am adding a general purpose function for the turbulent advection of CLUBB'saddturbulent_adv_pdf.F90turbulent_adv_pdf.F908229ba9d74d876bcc0698e1ac0e67d554ccee4481530917910000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added/changed a couple comments for the rhs portion of the generalized turbulent advection functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8725 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 205652eccb7a8134e56139076588faf4264b0496 2018-07-06 22:58:30 +00008229ba9d74d876bcc0698e1ac0e67d554ccee448I added/changed a couple comments for the rhs portion of the generalizededitturbulent_adv_pdf.F90turbulent_adv_pdf.F90203d7900ea874e5b24af54b97f8d130f72c9ef251531162423000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe turbulent advection file that handles turbulent advection for predictive variances and covariances (where turbulent advection is handled by integrating over the PDF) is now set! Functions that handled the LHS (implicit component) and RHS (explicit component) of the turbulent advection term are ready to go! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8726 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3894e413ee48034e5a8a75a0f6e49d66d9f9cccf 2018-07-09 18:53:43 +0000203d7900ea874e5b24af54b97f8d130f72c9ef25The turbulent advection file that handles turbulent advection for predictiveeditturbulent_adv_pdf.F90turbulent_adv_pdf.F9074d40e391a81f2ec1ca1d71ac5f93ccbff5278411531262935000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, that calculates the turbulent velocity for a predictive variance or covariance for use with the "upwind" turbulent advection option. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8728 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0fa11b05c00ca08cd1373f15bc8d36f908a2556e 2018-07-10 22:48:55 +000074d40e391a81f2ec1ca1d71ac5f93ccbff527841I added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, thateditturbulent_adv_pdf.F90turbulent_adv_pdf.F9094d2e20139114e5f5009ea286ceccc775534f51d1531263209000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhoops, I forgot to make wpxpyp_zm and xpyp intent (in). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8729 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 00b12f393cc3fd434006faebdbcbf052f1c7d792 2018-07-10 22:53:29 +000094d2e20139114e5f5009ea286ceccc775534f51dWhoops, I forgot to make wpxpyp_zm and xpyp intent (in).editturbulent_adv_pdf.F90clubb_api_module.F90array_index.F90corr_varnce_module.F9067dcf4b14d66f7d4c55095c2d6fd2e63575488511531451904000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8730 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9089dce7bcad2b4b235a03d128216f633136f0f 2018-07-13 03:18:24 +000067dcf4b14d66f7d4c55095c2d6fd2e6357548851Added functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830editclubb_api_module.F90editcorr_varnce_module.F90editarray_index.F90advance_xp2_xpyp_module.F906fcdeeeda0f1708e9af2d38d3a47fbc7598b06ad1531457694000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code that advances predictive variances and covariances in advance_xp2_xpyp_module.F90 to use one set of turbulent advection functions for all turbulent advection options (explicit or implicit/semi-implicit based on PDF type, as well as centered or "upwind" discretization"). Along the way, I discovered that the current ADG1 implementation, which is supposed to be using "upwind" discretization, is only using "upwind" discretization for the implicit component of the turbulent advection term, while using centered discretization for the explicit (RHS) component of the turbulent advection term. An "upwind" discretization for the explicit component was never added to the code. I assumed this was an oversight, and an "upwind" discretization for the explicit component of the turbulent advection term was added as part of the new code for this project (in a prior commit). Both implicit and explicit components now use either centered discretization or "upwind" discretization consistently. Owing to the RHS discretization correct, as well owing to a different order of calculations, this commit is BIT_CHANGING. However, plots of all cases show that the previous revision and the current revision overlap for most cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8731 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fdba5b894298fe351486792a92a521586dc1d9b7 2018-07-13 04:54:54 +00006fcdeeeda0f1708e9af2d38d3a47fbc7598b06adI am updating the code that advances predictive variances and covariances ineditadvance_xp2_xpyp_module.F90clubb_api_module.F90fb8065e129f7e8ea2ba43d10446efafc265554941531767879000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8733 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fbc3b6719ef6a8a5d8f4f728c77ca6aeac8886d4 2018-07-16 19:04:39 +0000fb8065e129f7e8ea2ba43d10446efafc26555494Renamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830editclubb_api_module.F90advance_xm_wpxp_module.F900249e99c6cd889bb8537572f8e1d83fc21a915e51531947642000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code that advances predictive scalar fluxes (<w'x'>) in advance_xm_wpxp_module.F90 to use one set of turbulent advection functions for all turbulent advection options (explicit or implicit/semi-implicit based on PDF type, as well as centered or "upwind" discretization). For the default ADG1 PDF, the calculations are mathematically the same. However, they occur in a different order in the new code. This makes this revision BIT_CHANGING. However, plots of all cases show that the previous revision and the current revision overlap for most cases. Only the most sensitive cases show differences on the plots. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8735 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ef271ff2d4a0fb4b7ca7fdfbaba3a3d2f6cac016 2018-07-18 21:00:42 +00000249e99c6cd889bb8537572f8e1d83fc21a915e5I am updating the code that advances predictive scalar fluxes (<w'x'>) ineditadvance_xm_wpxp_module.F90fill_holes.F9084eb73b8d08f9bc2b3d2d3941bbc7c197b6710931531955549000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAs a first step toward having code that can clip mean values of hydrometeor concentrations or SILHS sample point values of hydrometeor concentrations, I have made a new subroutine out of the code that clips hydrometeor concentrations. It is not yet interfaced and I haven't deleted the old code yet. CLUBB Trac ticket reference: clubb:ticket:833. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8736 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7f535b468ffcb92bbded378a263a9d3ffa2bd736 2018-07-18 23:12:29 +000084eb73b8d08f9bc2b3d2d3941bbc7c197b671093As a first step toward having code that can clip mean values of hydrometeoreditfill_holes.F90clubb_api_module.F900a518f3553cb13ad37bf5410f6d638d2ea79f2db1531963960000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduinit_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8737 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 28016716b08941d7e9ed1b1055b40300eb842b9f 2018-07-19 01:32:40 +00000a518f3553cb13ad37bf5410f6d638d2ea79f2dbinit_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562editclubb_api_module.F90fill_holes.F9089000415c991e9c188c91e11fa80184e507d965f1532030333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have now interfaced the subroutine that I made out of the code that clips hydrometeor concentrations with the rest of CLUBB, in place of the old code. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:833. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8738 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1935918c4825f5c4b7b5bed91355b19954edd555 2018-07-19 19:58:53 +000089000415c991e9c188c91e11fa80184e507d965fI have now interfaced the subroutine that I made out of the code that clipseditfill_holes.F90silhs_api_module.F90latin_hypercube_driver_module.F90e1286c608df85ea656739a4711521e626baa7ab81532113969000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a call to the subroutine that clips hydrometeor concentrations from SILHS. This call clips the value of hydrometeor concentrations for SILHS sample points, rather than for grid means. This code is enclosed in a flag, l_clip_hydromet_samples, that is turned off by default. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:833. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8739 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5d153ec8c40983f99d2d2001ca7458f8024fbf2b 2018-07-20 19:12:49 +0000e1286c608df85ea656739a4711521e626baa7ab8I have added a call to the subroutine that clips hydrometeor concentrations fromeditsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90e31aae7b02811fb9034da4e9e0f97f29603e2a2d1532495361000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added new code that clips the overall correlation of w and rt or the overall correlation of w and theta-l by increasing wp2 (after advancing wp2) when one of the aforementioned correlations is outside of the range that they're supposed to be in. This code is controlled by a flag, which is turned off by default. The results in GrADS files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:835. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8740 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6fc699c3a4be0c178ba1e7e05b3571bf218f5367 2018-07-25 05:09:21 +0000e31aae7b02811fb9034da4e9e0f97f29603e2a2dI added new code that clips the overall correlation of w and rt or the overalleditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90stats_variables.F90advance_xp2_xpyp_module.F90stats_zt_module.F90d4e0f942e2c4fea13259aea59151e689111d4eb81532554503000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which are part of the semi-implicit turbulent advection term for rtp2 and thlp2, respectively. This is used for ADG1 and for the explicit turbulent advection option. Since new stats are being added, this revision is BIT_CHANGING. However, this is only for *_zt stats files. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8741 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8c7a58900f887917c29446fb79f7af1df9ac777 2018-07-25 21:35:03 +0000d4e0f942e2c4fea13259aea59151e689111d4eb8I added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which areeditadvance_xp2_xpyp_module.F90editstats_variables.F90editstats_zt_module.F90clubb_api_module.F90advance_windm_edsclrm_module.F909216aa9dddfd6115909e238aa44fc3b70ced37731532572197000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8742 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41e97fd33df9189dcbd8401090b1b6fb9cbfd198 2018-07-26 02:29:57 +00009216aa9dddfd6115909e238aa44fc3b70ced3773Made clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800editclubb_api_module.F90editadvance_windm_edsclrm_module.F90advance_windm_edsclrm_module.F90dd55be4737a50a6033e606883382a7085f9b1c261532572383000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8743 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e89c92fd0f27d2c264c4bdd7cfd54d564d639ceb 2018-07-26 02:33:03 +0000dd55be4737a50a6033e606883382a7085f9b1c26Reverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800editadvance_windm_edsclrm_module.F90clubb_api_module.F90095ae79bf0437ae71cade1390af663fa0ee5f1b61532626737000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed nightly tests git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8744 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ce40ceb7330f98de907410203e620c04fac4f7e9 2018-07-26 17:38:57 +0000095ae79bf0437ae71cade1390af663fa0ee5f1b6Fixed nightly testseditclubb_api_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F905a2c7c73d6490d53ab9a3c7930c37c52d52904e81532726843000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code to allow C2 to be adjusted by multiplying by the greater of cloud fraction or a small constant. This code is turned off by default. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:836. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8746 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0b346735398eebf6d3aa78a2aade0277168bb964 2018-07-27 21:27:23 +00005a2c7c73d6490d53ab9a3c7930c37c52d52904e8I have added code to allow C2 to be adjusted by multiplying by the greater ofeditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90model_flags.F90advance_xp2_xpyp_module.F906c918c0f09f47468a92d2893276ae667b0fa5c631532820384000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the location of the declaration and setting of new model flags to model_flags.F90 so that they could be read in through the configurable model flags namelist. CLUBB Trac ticket references: clubb:ticket:835 and clubb:ticket:836. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8747 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c7148d45f984e40bf473959504068e851c565edc 2018-07-28 23:26:24 +00006c918c0f09f47468a92d2893276ae667b0fa5c63I moved the location of the declaration and setting of new model flags toeditadvance_xp2_xpyp_module.F90editmodel_flags.F90editadvance_wp2_wp3_module.F90advance_windm_edsclrm_module.F90diffusion.F9041c69abbeda07301f40a459338d56333b541b8b61533077694000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8751 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 560390daf8556a0a5f94f8887d4e8fa470dcb8a7 2018-07-31 22:54:54 +000041c69abbeda07301f40a459338d56333b541b8b6Improved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834editadvance_windm_edsclrm_module.F90editdiffusion.F90advance_windm_edsclrm_module.F90diffusion.F9047cc48c6153c8ac4d46152a54b0b7ab46c6fd8371533169930000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8757 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8c69c81acdc9cc0842ffd162a9e934d586b00c5e 2018-08-02 00:32:10 +000047cc48c6153c8ac4d46152a54b0b7ab46c6fd837Fixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834editadvance_windm_edsclrm_module.F90editdiffusion.F90advance_windm_edsclrm_module.F901d391de95c4b312041456ecc13b165a54f2d14021533236343000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduActually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8758 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: be4e4b3491e9d5cb60f878d34533b97259ae75d5 2018-08-02 18:59:03 +00001d391de95c4b312041456ecc13b165a54f2d1402Actually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834editadvance_windm_edsclrm_module.F90advance_xp2_xpyp_module.F90diffusion.F90stats_clubb_utilities.F90advance_windm_edsclrm_module.F90turbulent_adv_pdf.F90mean_adv.F902186e361695511d0e57bd728903ffddb7a7ada181533673761000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOptimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8761 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e04c8b4d12c19f275a7ffb2c48ca2b0cd1a32539 2018-08-07 20:29:21 +00002186e361695511d0e57bd728903ffddb7a7ada18Optimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834editdiffusion.F90editadvance_xp2_xpyp_module.F90editstats_clubb_utilities.F90editadvance_windm_edsclrm_module.F90editmean_adv.F90editturbulent_adv_pdf.F90stats_clubb_utilities.F902527ef4247d172eeea40ec4e8502a62a3ea67e051533673810000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted stats_clubb_utilities, accidental commit git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8762 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1854eb8cedabd6dc0776b86313ed70f8c5c5ee8 2018-08-07 20:30:10 +00002527ef4247d172eeea40ec4e8502a62a3ea67e05Reverted stats_clubb_utilities, accidental commiteditstats_clubb_utilities.F90advance_windm_edsclrm_module.F906e57d219689d582e8d25d0213163984dd64d28c91533777712000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8763 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 989d179f909385c13ff929975318299b4e86f409 2018-08-09 01:21:52 +00006e57d219689d582e8d25d0213163984dd64d28c9This should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837editadvance_windm_edsclrm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F90parameters_tunable.F90stats_zm_module.F90stats_variables.F90surface_varnce_module.F90advance_helper_module.F9029ebdfcb8332dbe0cc4c3bc884b831c5752dc3671533830141000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu This commit adds splatting terms to the wp2, up2, and vp2 equations. A tuning parameter, C_wp2_splat, has been added, as well as budget term stats. However, C_wp2_splat still needs to be added to the error.in files. In addition, no splatting effect has been added to the wp3 equation yet. This commit is BIT_CHANGING, but only because new budget terms have been added to the zm stats. The results are identical because the value of the tuning parameter C_wp2_splat has been set to zero. I spot checked the output from arm_zt.nc, and it was identical to the prior revision except for the inclusion of C_wp2_splat in the new .nc file. Also, the plots looked identical for the priority cases, even the sensitive cases like arm_97. For clubb:ticket:832. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8765 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8b5de7f54101ada0a8d95a5d5dc55760030b464 2018-08-09 15:55:41 +000029ebdfcb8332dbe0cc4c3bc884b831c5752dc367editsurface_varnce_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editparameters_tunable.F90editadvance_wp2_wp3_module.F90editstats_zm_module.F90editparameter_indices.F90editadvance_helper_module.F90editclubb_api_module.F90editstats_variables.F90advance_xm_wpxp_module.F90mean_adv.F90934865a509b3b821c1fd3ba8519456bcc069fbb81533947805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImpoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8767 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 090ab653a2e793683920a8a0efc7b22cb5a7ed82 2018-08-11 00:36:45 +0000934865a509b3b821c1fd3ba8519456bcc069fbb8Impoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834editmean_adv.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90parameters_tunable.F90stats_variables.F90stats_zt_module.F90advance_helper_module.F9039398fe6f19281b12245d9ff9bcd16468f60d44d1534028076000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit implements the effects of splatting on wp3. Splatting diminishes wp3 by reducing both vertical motions and skewness near inversions and the ground surface. This commit adds a new term to the wp3 budget, wp3_splat, and hence is BIT_CHANGING. However, otherwise, the results appear to be bit-for-bit identical; at least, they are for the arm_zt.nc file. For clubb:ticket:832. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8769 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e1536d8bc22fe532acc78067afa1e35b1c3324f 2018-08-11 22:54:36 +000039398fe6f19281b12245d9ff9bcd16468f60d44dThis commit implements the effects of splatting on wp3.editadvance_clubb_core_module.F90editparameters_tunable.F90editstats_zt_module.F90editadvance_helper_module.F90editstats_variables.F90editadvance_wp2_wp3_module.F90model_flags.F90advance_windm_edsclrm_module.F9016b36fb205bdfc55659c1204a4be16b4258c8dc81534219811000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the first step toward committing code that allows for the option of advancing um/upwp and vm/vpwp along with xm/wpxp variables. I have added the l_predict_upwp_vpwp flag and I have modified subroutine advance_windm_edsclrm appropriately. Results in GrADS output files from this revision are an exact match to results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8771 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1cb950ae77d865b0e96535a06c49a4c67b95aff 2018-08-14 04:10:11 +000016b36fb205bdfc55659c1204a4be16b4258c8dc8I am making the first step toward committing code that allows for the optioneditmodel_flags.F90editadvance_windm_edsclrm_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c7c4a8728f3beb30a09a265911580c71a5b3303b1534222811000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to allow the option of predicting upwp and vpwp by using the advance_xm_wpxp code to predict um and upwp, as well as vm and vpwp, alongside the advancement of other xm and wpxp variables. The option to do this is controlled by the l_predict_upwp_vpwp flag. When the flag is turned off (which it currently is), the traditional code in advance_windm_edsclrm is used for um, vm, upwp, and vpwp. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8772 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6c5845b594ec8f0221ec8b931f624d3a64efe030 2018-08-14 05:00:11 +0000c7c4a8728f3beb30a09a265911580c71a5b3303bI added code to allow the option of predicting upwp and vpwp by using theeditadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90pdf_utilities.F90new_tsdadg_pdf.F90LY93_pdf.F90advance_clubb_core_module.F90numerical_check.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90calc_roots.F90new_pdf.F90new_pdf_main.F905f3450b73aa08a477fab3fe1c06e3b2eedcfdf181534270528000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI took the liberty of upgrading CLUBB's PDF closure and related code to a vector array rather than a loop over PDF closure over all vertical levels. The majority of the changes were simply promoting single-value variables to vector array variables and changing vertical-level-dependent "if" statements to "where" statements. Otherwise, var_1 = C * var_2 * var_3 works for both single-value variables and vector array variables. The results in GrADS output files from the current revision were an exact match to the results in GRADS output files from the previous revision for all cases when optimization (for gfortran) was set to -O0 for both the previous revision and the current revision. Likewise, the results in GrADS output files from the current revision were an exact match to the results in GrADS output files from the previous revision for all cases when optimization (for gfortran) was set to -O1 for both the previous revision and the current revision. However, when optimization (for gfortran) was set to the default value of -O2, the results are not an exact match between the previous and current versions. Some property of vectorizing the code must cause differences when optimization is set higher (-O2 or -O3). This makes this revision BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8773 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 34d66b14aafa808a28970d51c0f54d43e8654f1f 2018-08-14 18:15:28 +00005f3450b73aa08a477fab3fe1c06e3b2eedcfdf18I took the liberty of upgrading CLUBB's PDF closure and related code to a vectoreditLY93_pdf.F90editnumerical_check.F90editnew_pdf.F90editadg1_adg2_3d_luhar_pdf.F90editcalc_roots.F90editadvance_clubb_core_module.F90editnew_pdf_main.F90editpdf_closure_module.F90editpdf_utilities.F90editnew_tsdadg_pdf.F90mono_flux_limiter.F90d06277e3aa5630a079c12066c053c590b07407c41534278304000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the monotonic flux limiter to account for vector variables u and v. The monotonic flux limiter can now be used with um/upwp and vm/vpwp. Compared to previous results with l_predict_upwp_vpwp turned on and the call to the monotonic flux limiter omitted for um/upwp and vm/vpwp, the results are an exact match for all cases except ATEX, CGILS S6, CGILS S11, CGILS S12, and MC3E. The l_predict_upwp_vpwp flag is still turned off, so default CLUBB results remain the same as the previous version. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8774 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 863243836db1aa00e0e247647ab808ea9462c1c2 2018-08-14 20:25:04 +0000d06277e3aa5630a079c12066c053c590b07407c4I updated the monotonic flux limiter to account for vector variables u and v.editmono_flux_limiter.F90stats_variables.F90advance_clubb_core_module.F90stats_zt_module.F901712c2ec43aed1ce5db0776585a6fe8ecafaaddd1534282717000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output. I also made small corrections to the upwp and vpwp clipping numbers and I introduced error checking so that l_predict_upwp_vpwp can only currently be used with ADG1 and with implicit turbulent advection. Since new stats have been added to the zt file, this revision is BIT_CHANGING. However, only the zt stats output files are changed. The remaining stats output files from this revision are an exact match to the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8775 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4b307e4c38a33dedfd187e2bd134de4c5dac6bb0 2018-08-14 21:38:37 +00001712c2ec43aed1ce5db0776585a6fe8ecafaadddI am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output.editstats_zt_module.F90editstats_variables.F90editadvance_clubb_core_module.F90mono_flux_limiter.F90e332712a0fa6b7e7c8ec53707e7d36abadf624071534282930000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic flux limiter. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8776 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bb8862710542400fad91e2e495e4c9358f91496 2018-08-14 21:42:10 +0000e332712a0fa6b7e7c8ec53707e7d36abadf62407In r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic fluxeditmono_flux_limiter.F90model_flags.F90667c9ea18924393a999502f05d11138850316c1d1534285132000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am turning on the l_predict_upwp_vpwp code! This revision is BIT_CHANGING, in the best way possible! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8778 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fbf124c85d68eda019777aac6790e369e30e829c 2018-08-14 22:18:52 +0000667c9ea18924393a999502f05d11138850316c1dI am turning on the l_predict_upwp_vpwp code!editmodel_flags.F90advance_wp2_wp3_module.F907bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcd1534366437000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8780 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 52dc00a1ac3994ccf521d693f0625dee06aa6242 2018-08-15 20:53:57 +00007bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcdImproved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834editadvance_wp2_wp3_module.F90advance_windm_edsclrm_module.F90a62d534df9295f8929a7966f6742f1bb5fbc226b1534370242000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational efficiency of windm_edsclr_lhs. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8781 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b30e9584d2828083fc42dd3580ca6438667216c2 2018-08-15 21:57:22 +0000a62d534df9295f8929a7966f6742f1bb5fbc226bImproved computational efficiency of windm_edsclr_lhs. See clubb:ticket:834editadvance_windm_edsclrm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90turbulent_adv_pdf.F90mean_adv.F90a6b375b1820233dab18dad3bc9e4757a56a451391534373430000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the name of _turb to _ta, and _advm to _ma to keep with the current naming conventions. Also fixed line length warnings. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8782 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: eb87f1b4a5550ecc44fbe749862b6cff656f166e 2018-08-15 22:50:30 +0000a6b375b1820233dab18dad3bc9e4757a56a45139Changed the name of _turb to _ta, and _advm to _ma to keep with the current naming conventions. Also fixed line length warnings. clubb:ticket:834editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editturbulent_adv_pdf.F90editmean_adv.F90stats_clubb_utilities.F90pdf_closure_module.F9094a340e184b616d28bd6c155f8ddb84f193d1ab51534448108000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded grid_class to the dependency lists of the pdf files that were changed in commit 8773 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8783 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9bdea81a104b568440d7e96139ea0b8af8155aeb 2018-08-16 19:35:08 +000094a340e184b616d28bd6c155f8ddb84f193d1ab5Added grid_class to the dependency lists of the pdf files that were changed in commit 8773editstats_clubb_utilities.F90editpdf_closure_module.F90stats_clubb_utilities.F90pdf_closure_module.F9057ccb4777be0ec4b156749677932f99785b9307b1534448231000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAccidental commit, undoing 8783 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8784 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cabf23cfdfd5a6e69982c2c8d22c7f2f5899becb 2018-08-16 19:37:11 +000057ccb4777be0ec4b156749677932f99785b9307bAccidental commit, undoing 8783editstats_clubb_utilities.F90editpdf_closure_module.F90model_flags.F90b6174f642f2043d29a8380a5093d18b7a84380511535473340000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffingriffinb@lyons.math.uwm.eduI am changing the default setting of flags l_min_wp2_from_corr_wx and l_min_xp2_from_corr_wx to true to match what is found in configurable_model_flags.in. This is for #835 in CLUBB GIT Issues. 2018-08-28 11:22:20 -0500b6174f642f2043d29a8380a5093d18b7a8438051I am changing the default setting of flags l_min_wp2_from_corr_wx andeditmodel_flags.F90advance_clubb_core_module.F90advance_helper_module.F9026007da2390b402bded083d130374840ca0c354c1535582510000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified compute_Cx_fnc_Richardson. Made it a subroutine, modified the algorithm slightly, removed use of allocates and deallocates from it, removed verical_avg call to avoid redoing calculations and precalculated some divides. This saved clubb_core about 8% runtime overall. see clubb:issues:834 2018-08-29 17:41:50 -050026007da2390b402bded083d130374840ca0c354cModified compute_Cx_fnc_Richardson. Made it a subroutine, modified the algorithm slightly, removed use of allocates and deallocates from it, removed verical_avg call to avoid redoing calculations and precalculated some divides. This saved clubb_core about 8% runtime overall. see clubb:issues:834editadvance_helper_module.F90editadvance_clubb_core_module.F90advance_helper_module.F9025761f981a2c0900733322ee3e3c70342e8cbdb41535585528000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved print line. Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases. 2018-08-29 18:32:08 -050025761f981a2c0900733322ee3e3c70342e8cbdb4Removed print line. Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases.editadvance_helper_module.F90pdf_parameter_module.F90pdf_closure_module.F9072b36ee56fd04d6703723b2a64e1997c166091971535591224000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834 2018-08-29 20:07:04 -050072b36ee56fd04d6703723b2a64e1997c16609197Changed the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834editpdf_closure_module.F90editpdf_parameter_module.F90stats_variables.F90advance_clubb_core_module.F90stats_zm_module.F90clip_explicit.F90advance_xm_wpxp_module.F90mono_flux_limiter.F908d6e9153ccb95af59afbcd9fad0e0b4258801ccf1535655087000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffingriffinb@brock.math.uwm.eduI am adding source code for the introduction of budgets for predictive upwp and vpwp. This is the first commit of a two-stage commit. 2018-08-30 13:51:27 -05008d6e9153ccb95af59afbcd9fad0e0b4258801ccfI am adding source code for the introduction of budgets for predictive upwpeditstats_variables.F90editclip_explicit.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editmono_flux_limiter.F90editstats_zm_module.F90mixing_length.F908b6e616a45f804c498d3ce6ac4a802b30fffbab81535671998000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834 2018-08-30 18:33:18 -05008b6e616a45f804c498d3ce6ac4a802b30fffbab8Improved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834editmixing_length.F90lapack_wrap.F9085d980ead9d6e04b380fb326fcd63a72d09ac7501535676996000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834 2018-08-30 19:56:36 -050085d980ead9d6e04b380fb326fcd63a72d09ac750Improved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834editlapack_wrap.F90saturation.F902b2c9519389dab1529f1ac5fea57ceb6157f902f1535753136000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834 2018-08-31 17:05:36 -05002b2c9519389dab1529f1ac5fea57ceb6157f902fModified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834editsaturation.F90grid_class.F904a6c2943cad5ec872cc9459201436bc7fc562d6d1535757226000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCopied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834 2018-08-31 18:13:46 -05004a6c2943cad5ec872cc9459201436bc7fc562d6dCopied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834editgrid_class.F90fill_holes.F90advance_clubb_core_module.F90stats_clubb_utilities.F90clubb_api_module.F90mono_flux_limiter.F90a7117763631381c34ab604941651b72b1c7a9b691535760872000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834 2018-08-31 19:14:32 -0500a7117763631381c34ab604941651b72b1c7a9b69Changed vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834editadvance_clubb_core_module.F90editmono_flux_limiter.F90editstats_clubb_utilities.F90editclubb_api_module.F90editfill_holes.F90latin_hypercube_driver_module.F90e70a1709b6228f589a1582a96e51c3afefaa14f41535760872000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834 2018-08-31 19:14:32 -0500e70a1709b6228f589a1582a96e51c3afefaa14f4Changed vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834editlatin_hypercube_driver_module.F90clip_explicit.F90647260c7c91d494a968c69c0ed377a322c257cd81536110946000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834 2018-09-04 20:29:06 -0500647260c7c91d494a968c69c0ed377a322c257cd8Improved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834editclip_explicit.F90surface_varnce_module.F908a9a8dd41a238142d1e2f7543fa5b831f004ec331536871092000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI made the surface splatting terms conservative. That is, I subtracted from wp2_sfc when splatting adds to up2_sfc and vp2_sfc, in such a way that the sum is unchanged. To avoid temporal noise, I needed to preserve the realizability of wpthlp_sfc and wprtp_sfc, rather than allowing wp2_sfc to be clipped all the way down to w_tol_sqd. Because I added clipping on thlp2_sfc and rtp2_sfc, this commit is BIT_CHANGING, but only for the most sensitive cases. For #832. 2018-09-13 15:38:12 -05008a9a8dd41a238142d1e2f7543fa5b831f004ec33I made the surface splatting terms conservative. That is, I subtracted from wp2_sfceditsurface_varnce_module.F90advance_xp2_xpyp_module.F90523ca23a88a67377b230620f84357d520aa6d9041537204202000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2. The same sort of clipping already exists for wp2. With the splatting terms active, I found a configuration of twp_ice where the clipping on up2 and vp2 is useful. However, in the standard configuration, none of the priority cases changes answers because none have up2 and vp2 > 1000. For #832. 2018-09-17 12:10:02 -0500523ca23a88a67377b230620f84357d520aa6d904I added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90surface_varnce_module.F90lapack_wrap.F90advance_helper_module.F9064a6fbc07bc7798dd63cd7fcad47f30a660f315b1537543324000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING. To prevent noise in the vertical profiles, the splatting terms needed to be clipped. Unfortunately, this will introduce some undesired dependence on time step. At some point, we may wish to treat the splatting terms in a semi-implicit way. To make the splatting terms more effective, the return-to-isotropy coefficient (C4) has been reduced. This puts it more in accord with standard values, and it allows CLUBB to be more anisotropic. Other coefficients were also retuned. Along the way, I broke up some comment lines to avoid a warning about line length. Also, I commented out the check on the presence of the Id tag. That tag is no longer useful because CLUBB has moved from svn to git. For #832. 2018-09-21 10:22:04 -050064a6fbc07bc7798dd63cd7fcad47f30a660f315bThis commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING.editadvance_clubb_core_module.F90editlapack_wrap.F90editsurface_varnce_module.F90editadvance_helper_module.F90pdf_closure_module.F90constants_clubb.F90f61d9953e79775fa70f6083e07c962aefc6459421537562375000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834 2018-09-21 15:39:35 -0500f61d9953e79775fa70f6083e07c962aefc645942Added functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834editpdf_closure_module.F90editconstants_clubb.F90advance_clubb_core_module.F90e6ef3b8923f3641f496708629e6fd0239b3ea1601537823184000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 I neatened and/or elaborated comments on the inputs and outputs of advance_clubb_core. 2018-09-24 16:06:24 -0500e6ef3b8923f3641f496708629e6fd0239b3ea160Update advance_clubb_core_module.F90editadvance_clubb_core_module.F90latin_hypercube_driver_module.F90acea662cf9f65cd63a109d7ee1469bcfc2174bc81537824704000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate latin_hypercube_driver_module.F90 I neatened and elaborated some code comments for the SILHS driver. 2018-09-24 16:31:44 -0500acea662cf9f65cd63a109d7ee1469bcfc2174bc8Update latin_hypercube_driver_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90f28cdc7db7c73dde06d0de691ed5dc78302a2e321538943429000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI clipped sigma_sqd_w to prevent interpolated values of it from going negative. This avoids crashes in the lba, twp_ice, and mc3e cases when l_call_pdf_closure_twice = .true. Small negative values in sigma_sqd_w were causing small negative values of varnce_w_1 and varnce_w_2 at the lowest grid level, which then caused floating point exceptions in the pdf closure. l_call_pdf_closure_twice = .true. is not the default setting, but it is the setting in CAM6. Hopefully this code change will help allow the new version of CLUBB to be backwards-compatible with the CAM6 version. A few numbers in the output did change in the last digit or two in the arm_97 case. Maybe it was only sigma_sqd_w itself that was changing, and that value wasn't used anywhere? Anyway, technically, this commit is BIT_CHANGING. For issue larson-group/cam#116. 2018-10-07 15:17:09 -0500f28cdc7db7c73dde06d0de691ed5dc78302a2e32I clipped sigma_sqd_w to prevent interpolated values of iteditadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90fe9d81553653c1039c48f6732dfb3ccfae53cb801539710115000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a new option to diagnose the dissipation time scale, tau, first and then use it to diagnose the mixing length, Lscale, as Lscale = tau * tke. The purpose is twofold: 1) reduce computational expense of computing Lscale; and 2) increase tau near the ocean surface, in the hopes of improving hurricane surface winds. The option is currently turned off with the flag l_diag_Lscale_from_tau, and so the results are an exact match to those produced by the prior code. For #842. 2018-10-16 12:15:15 -0500fe9d81553653c1039c48f6732dfb3ccfae53cb80I added a new option to diagnose the dissipation time scale, tau, firsteditmodel_flags.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F906fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea71541017963000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI found a new way to diagnose upthvp. Instead of using a bound on correlations, it relies on the formula upthvp = upthlp + 200 K uprtp + 2000 K uprcp. upthlp and uprtp are then diagnosed based on a budget equation from Andre et al. The new formula produces more upthvp aloft, where upwp is small. The budget of upwp for the BOMEX case looks plausible. I also discovered that when upthvp is better diagnosed, then the upwp_pr4 term is unnecessary. So I zeroed it out for now. For #841. 2018-10-31 15:32:43 -05006fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea7I found a new way to diagnose upthvp. Instead of using a bound on correlations, it relieseditadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90970984d58351c5682e819dc42b48d4824bacc67b1541777541000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.eduintroducing error into clubb core for testing larson-group/sys_admin#533 2018-11-09 09:32:21 -0600970984d58351c5682e819dc42b48d4824bacc67bintroducing error into clubb core for testing larson-group/sys_admin#533editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90ab452aecedc7073f07314bdc6b068de879727ae61541788295000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.edureverting error that was introduced larson-group/sys_admin#533 2018-11-09 12:31:35 -0600ab452aecedc7073f07314bdc6b068de879727ae6reverting error that was introduced larson-group/sys_admin#533editadvance_xm_wpxp_module.F90parameters_tunable.F90model_flags.F90fd04a5135f41fc7ba52f9012aa2864357fb965f01542138244000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am briefly changing some of the flag and parameter settings in CLUBB to match what is currently used by CAM. This change will be undone with the next trunk (master) commit. 2018-11-13 13:44:04 -0600fd04a5135f41fc7ba52f9012aa2864357fb965f0I am briefly changing some of the flag and parameter settings in CLUBBeditparameters_tunable.F90editmodel_flags.F90parameters_tunable.F90model_flags.F909a2cfb9ac48201c27fe347841ab5cb5f38551c211542139368000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I am briefly changing some of the flag and parameter settings in CLUBB" This reverts commit adc5247053fe1bb22a8e73f747a39ed9d467d3fd. 2018-11-13 14:02:48 -06009a2cfb9ac48201c27fe347841ab5cb5f38551c21Revert "I am briefly changing some of the flag and parameter settings in CLUBB"editmodel_flags.F90editparameters_tunable.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90cfe0bae3a10cefb8aff3149aafe47cf8d2fb88591542742398000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding code that clips the sample point value of chi under extreme circumstances. Clipping was previously introduced (https://github.com/larson-group/clubb/commit/b0932de921c387c2145f487465e0bafdee320269) to the code that calculates CLUBB's cloud fraction for each PDF component, setting it to 0 or 1 under extreme conditions. Rarely, sample point values of chi can be drawn that violate the cloudiness condition (a positive sample point value of chi when cloud fraction is clipped to 0, or a negative sample point value of chi when cloud fraction is clipped to 1). This commit introduces new code that clips the value of the sample point of chi when it violates the cloudiness condition. This clipping does not come into play at all during current standalone runs of CLUBB, so the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. However, this clipping does come into play during CAM-CLUBB-SILHS global runs. Larson Group Issue: https://github.com/larson-group/cam/issues/116. 2018-11-20 13:33:18 -0600cfe0bae3a10cefb8aff3149aafe47cf8d2fb8859I am adding code that clips the sample point value of chi undereditlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90latin_hypercube_driver_module.F90e513c22587f4e5b73e0863b80d405b6077bb0ae51542837532000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated the SILHS code to omit the assert_consistent_cf_component check under the special conditions that both | mu_chi_i | <= eps and sigma_chi_i <= chi_tol. These are the conditions that PDF closure now uses when calculating cloud_frac_i to say that there's a constant PDF of chi at the saturation point. The code in PDF closure sets cloud_frac_i to 0 in this situation. However, the SILHS check may fail in this special case. This revision allows CAM-CLUBB-SILHS to run. It doesn't affect the current version of standalone CLUBB. 2018-11-21 15:58:52 -0600e513c22587f4e5b73e0863b80d405b6077bb0ae5I have updated the SILHS code to omit the assert_consistent_cf_componenteditlatin_hypercube_driver_module.F90pdf_closure_module.F908b4636b0b9ba044518efadf97f44604fb52658e41542840937000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a couple of comments reminding users to change the conditions in the SILHS check if the conditions change in the calculation of cloud fraction in PDF closure. 2018-11-21 16:55:37 -06008b4636b0b9ba044518efadf97f44604fb52658e4I added a couple of comments reminding users to change the conditions ineditpdf_closure_module.F90latin_hypercube_driver_module.F906b1fd405befd43397db59368b76d282ededfbe4c1542840937000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a couple of comments reminding users to change the conditions in the SILHS check if the conditions change in the calculation of cloud fraction in PDF closure. 2018-11-21 16:55:37 -06006b1fd405befd43397db59368b76d282ededfbe4cI added a couple of comments reminding users to change the conditions ineditlatin_hypercube_driver_module.F90parameters_tunable.F90model_flags.F9037c8f1b5b614f57901e66d7ee8e6e07d09c57c541544053895000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB"" This reverts commit 7e8b4f7f20f25bccdbcaca0fccb970d793518133. I am briefly re-setting the CAM-specific flag and parameter settings for CLUBB for use in CAM-CLUBB. I am going to make (another) tag of this revision, and then again revert this revision. 2018-12-05 17:51:35 -060037c8f1b5b614f57901e66d7ee8e6e07d09c57c54Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB""editparameters_tunable.F90editmodel_flags.F90parameters_tunable.F90model_flags.F9066cc9401b0f477b7d9875c4354ccb974788834871544054506000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB""" This reverts commit a56d278f12df2c85116c41459bd54c254ee94b62. I again reverting back from the flag and parameter settings used in CAM-CLUBB and returning the CLUBB master to its normal settings. 2018-12-05 18:01:46 -060066cc9401b0f477b7d9875c4354ccb97478883487Revert "Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB"""editmodel_flags.F90editparameters_tunable.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F904c7b25bb90d21e435fd03474d328228fc11d097b1545156359000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI committed a subroutine, diagnose_upxp, that calculates upthlp, uprtp, vpthlp, vprtp using a simple diagnostic version of Eqn. 7 of Andre et al. (1978). Ultimately, CLUBB will use this in order to compute the buoyancy terms in the upwp and vpwp budgets. The results match the prior repo results bit for bit if, in the prior code, I pull tau_C6_zm inside the parentheses in the prior calculation of upthlp and uprtp: upthvp = - 0.3_core_rknd * tau_C6_zm * ( upwp * ddzt( thlm ) + wpthlp * ddzt( um ) & + 200.0_core_rknd * ( upwp * ddzt( rtm ) + wprtp * ddzt( um ) ) ) & This is needed to avoid a change in the order of operations, which changes the results in IEEE arithmetic. I also need to set C6=1 and C7=0 in subroutine diagnose_upxp. However, what I am committing includes C6 and C7 in subroutine diagnose_upxp. It doesn't change the results much, but nevertheless the results are BIT_CHANGING. In addition, four new stats are added to all_stats.in and standard_stats.in: upthlp, uprtp, vpthlp, and vprtp. For #841. 2018-12-18 12:05:59 -06004c7b25bb90d21e435fd03474d328228fc11d097bI committed a subroutine, diagnose_upxp, that calculateseditstats_variables.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90pdf_closure_module.F906edf0adb68cffee7a4ee15a75bdbedac20d2d42e1545352741000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@mitch.math.uwm.eduImproved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834 2018-12-20 18:39:01 -06006edf0adb68cffee7a4ee15a75bdbedac20d2d42eImproved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834editpdf_closure_module.F90setup_clubb_pdf_params.F90ec1fb66c9630d79bc710eeca12df3716ba7b534d1545526862000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a large outer "do" loop over all vertical level, and instead, promote single-level variable declarations to arrays and use where...elsewhere statements rather than else...elseif statments. The part of setup_clubb_pdf_params.F90 that is being modified is the part of the code that calculates the PDF component (in-precip) means and (in-precip) standard deviations of hydrometeor species for the hydrometeor portion of the PDF. This is being done in an effort to speed up CLUBB. This does not pertain to CLUBB core, but it does pertain to analytic KK or SILHS cases. When the gfortan optimization level is decreased to -O0 or -O1, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. When the gfortran optimization level is left at the current default of -O2, the results remain an exact match for many cases, including some that use upscaled KK or SILHS, but results change for ARM 97, DYCOMS-II RF02 DO, ASTEX A209, TWP-ICE, and MC3E, which tecnically makes this revision BIT_CHANGING. 2018-12-22 19:01:02 -0600ec1fb66c9630d79bc710eeca12df3716ba7b534dI am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a largeeditsetup_clubb_pdf_params.F90pdf_utilities.F90setup_clubb_pdf_params.F90Nc_Ncn_eqns.F90b19476be5eb8e937f24c39f06a37f3981da450971546468210000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code within setup_clubb_pdf_parameters.F90 in order to take more code out of the outer loop over all vertical levels and internally promote scalars to vectors. This is designed to speed up the code for analytic KK or SILHS runs. The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-02 16:30:10 -0600b19476be5eb8e937f24c39f06a37f3981da45097I am updating the code within setup_clubb_pdf_parameters.F90 in order to takeeditpdf_utilities.F90editsetup_clubb_pdf_params.F90editNc_Ncn_eqns.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90ae02afd6021e9f3e38b95c203221042af7d877521546539880000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduTo diagnose uprcp using CLUBB's PDF machinery, I fed some variables related to horizontal wind through some argument lists. The code change is incomplete at this point. The results do not change because the variables are declared locally in subroutine pdf_closure, and nothing is done with the output, uprcp. The wind variables are not even initialized at this point. Nonetheless, the results of the arm case are bit-for-bit identical with the prior results. The units tests still pass. For #841. 2019-01-03 12:24:40 -0600ae02afd6021e9f3e38b95c203221042af7d87752To diagnose uprcp using CLUBB's PDF machinery,editpdf_closure_module.F90editadg1_adg2_3d_luhar_pdf.F90advance_clubb_core_module.F90pdf_closure_module.F906873c26df22486e27273dfbdf4f80a09e605082a1546624367000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduContinuing with diagnosis of uprcp using CLUBB's PDF, I fed the arguments through subroutine pdf_closure. I have yet to feed them through pdf_closure_driver. For the arm case, the results are bit-for-bit identical. For #841. 2019-01-04 11:52:47 -06006873c26df22486e27273dfbdf4f80a09e605082aContinuing with diagnosis of uprcp using CLUBB's PDF,editpdf_closure_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90d2812cc427f191ac3810fa070100ed0daea03ce91546711817000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduMore code to diagnose uprcp using CLUBB's PDF. I fed the relevant arguments through pdf_closure_driver and advance_xm_wpxp. The results are still bit-for-bit identical because uprcp does not (yet) interact with the rest of the code. I put some idiot-proofing in setup_clubb_core because the arguments have not yet been fed through advance_clubb_core and preserved from time step to time step. The unit tests passed. For #841. 2019-01-05 12:10:17 -0600d2812cc427f191ac3810fa070100ed0daea03ce9More code to diagnose uprcp using CLUBB's PDF.editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F907e26b5bc89f6b289ee3b8037c7aee3fc748ff0181546715059000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduCorrection for the last uprcp-related commit: uprcp_zt is now interpolated to the zm levels in the case in which the pdf closure is called only once. The answers are still bit-for-bit identical. For #841. 2019-01-05 13:04:19 -06007e26b5bc89f6b289ee3b8037c7aee3fc748ff018Correction for the last uprcp-related commit:editadvance_clubb_core_module.F90pdf_utilities.F90Nc_Ncn_eqns.F902e9ec3492f275db7e1673a66b31b2dc7e0a1e0101546989949000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am correcting the code so that the Nightly Uninitialized Variables Test (Oracle Fortran) works correctly again. I've noticed that FORTRAN's where statement doesn't always prevent a certain part of a where ... elsewhere block from being entered in the same way that it prevents a certain part of an if ... elseif block from being entered. Code that is not supposed to be entered under certain conditions gets entered and then the mask is applied later, throwing away the results. However, if the intrusion causes a floating point exception for whatever reason, the run stops. I remember overhearing talk between Gunther and Vince about the where statement "guessing" wrong sometimes. Is there a way to stop it from "guessing" wrong or at least reduce the number of wrong "guesses"? 2019-01-08 17:25:49 -06002e9ec3492f275db7e1673a66b31b2dc7e0a1e010I am correcting the code so that the Nightly Uninitialized Variables TesteditNc_Ncn_eqns.F90editpdf_utilities.F90setup_clubb_pdf_params.F90559b1e46e16f3fc7c3c426ee68e34c6cc9ec77991547075606000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to pull parts of setup_pdf_parameters outside of a large "do" loop over all vertical levels and promote subroutines that are called from setup_pdf_parameters to cover the whole array of vertical levels, rather than just one level at a time. This code change is simply for a statistical output subroutine (pdf_param_hm_stats) within setup_pdf_parameters. This all is in an effort to speed up the code. This revision outputs stats at thermodynamic level 1 (which is below the model surface), whereas the subroutine wasn't previously called at level 1. This makes the results BIT_CHANGING, but only for the stats that are output at level 1 of the zt output files. The results in other GrADS output files (zm, sfc, etc.) from this revision are an exact match to the results in the same GrADS output files from the previous revision for all cases. 2019-01-09 17:13:26 -0600559b1e46e16f3fc7c3c426ee68e34c6cc9ec7799I am continuing to pull parts of setup_pdf_parameters outside of a large "do"editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90495d473a8f734fbab6da71b24c0a6ca171aab6d71547146438000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am pulling statistical output subroutine pdf_param_ln_hm_stats outside of the large "do" loop in setup_pdf_parameters. This is part of a larger code speed-up effort. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-10 12:53:58 -0600495d473a8f734fbab6da71b24c0a6ca171aab6d7I am pulling statistical output subroutine pdf_param_ln_hm_stats outsideeditsetup_clubb_pdf_params.F90pdf_utilities.F90ab433cfbf941bd9b7042f3ca7037e46cfdd3f47d1547252742000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope. 2019-01-11 18:25:42 -0600ab433cfbf941bd9b7042f3ca7037e46cfdd3f47dChanging the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope.editpdf_utilities.F90stats_variables.F90460f0559e1c307e6e01794b66d6afc26284eef711547566530000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.educommenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566 2019-01-15 09:35:30 -0600460f0559e1c307e6e01794b66d6afc26284eef71commenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566editstats_variables.F90stats_variables.F905659e7c24d5ebc1c52e9d4868aede6f4b8d106231547569661000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.eduuncommenting threadprivate larson-group/sys_admin#566 2019-01-15 10:27:41 -06005659e7c24d5ebc1c52e9d4868aede6f4b8d10623uncommenting threadprivate larson-group/sys_admin#566editstats_variables.F90setup_clubb_pdf_params.F902820b9199e5e5340b41a0331328f091283cc09311547593831000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have changed the structure of setup_pdf_parameters so that the subroutine that packs up the hydrometeor PDF parameters, subroutine pack_hydromet_pdf_params, is called from outside the loop over all vertical levels. Within pack_hydromet_pdf_params, variables have been promoted to arrays over all vertical levels. This leaves the reamining outer loops over all vertical levels to include only a few subroutines (diagnosing correlations and the Cholesky stuff). The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-15 17:10:31 -06002820b9199e5e5340b41a0331328f091283cc0931I have changed the structure of setup_pdf_parameters so that the subroutine thateditsetup_clubb_pdf_params.F90pdf_closure_module.F9079a4333484ac252ffe654daacb9a46593099c6a21547758965000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReturned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING. 2019-01-17 15:02:45 -060079a4333484ac252ffe654daacb9a46593099c6a2Returned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING.editpdf_closure_module.F90stats_zm_module.F90stats_variables.F90advance_xm_wpxp_module.F9049feb7636991743ae49e11deacc358da1afff9ee1547849925000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI am turning on the new calculation of uprcp that uses CLUBB's PDF. Also, I am re-introducing the pressure term upwp_pr4, because it is a useful preconditioner for producing an upgradient flux in upwp. This commit is BIT_CHANGING both because the answers change and because new outputs (uprcp, upthvp, ...) are written to disk. The gabls3_night case is degraded, but the other cases look comparable or better than before. For #841. 2019-01-18 16:18:45 -060049feb7636991743ae49e11deacc358da1afff9eeI am turning on the new calculation of uprcp that uses CLUBB's PDF.editstats_zm_module.F90editadvance_xm_wpxp_module.F90editstats_variables.F90setup_clubb_pdf_params.F904cea0a0f193d06e73a5877c561e63deb709cb7821548367895000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI modified the code in setup_clubb_pdf_params.F90 to use only one call to function pdf2hydromet_idx or function hydromet2pdf_idx within a loop, instead of multiple calls within array indices for different variables. This cuts down on excessive calls and also makes the code a little more nicely readable. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-24 16:11:35 -06004cea0a0f193d06e73a5877c561e63deb709cb782I modified the code in setup_clubb_pdf_params.F90 to use only one call toeditsetup_clubb_pdf_params.F90parameters_tunable.F9026acd1f23eba8ae32b195168c32a075c2baa1b461548854661000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch to match the clubb and silhs directories in the bmg929/atm/clubb_silhs_v2 branch of E3SM. This commit can be considered a list of modifications that were done to the CLUBB code in the clubb_silhs branch of E3SM. It should be noted that the version of CLUBB used in the clubb-silhs branches of E3SM is r8220. This commit provides a base to marge up CLUBB and SILHS to more current versions for use in E3SM CLUBB-SILHS. 2019-01-30 07:24:21 -060026acd1f23eba8ae32b195168c32a075c2baa1b46I am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch toeditparameters_tunable.F90parameters_tunable.F90model_flags.F90cd399238c1e54c874b145501fcb815d6e4a2b56d1548869329000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am setting model flags and tunable parameters in the clubb_E3SM_silhs branch in a backwards-compatible fashion to r8220, which was the version of CLUBB and SILHS that was previously used in E3SM-CLUBB-SILHS. 2019-01-30 11:28:49 -0600cd399238c1e54c874b145501fcb815d6e4a2b56dI am setting model flags and tunable parameters in the clubb_E3SM_silhs brancheditmodel_flags.F90editparameters_tunable.F90transform_to_pdf_module.F90f8c3b05eee249e8acb82087135d10a3349180c721548885592000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI temporarily set l_clip_extreme_chi_sample_pts back to false in the clubb_E3SM_silhs branch. This is being done to test for backwards compatibility while upgrading E3SM-CLUBB-SILHS. The goal is to produce a version of SILHS that is similar in all ways to the version of SILHS that was found in r8220. Once the merger is complete, this flag will likely be reset back to true. 2019-01-30 15:59:52 -0600f8c3b05eee249e8acb82087135d10a3349180c72I temporarily set l_clip_extreme_chi_sample_pts back to false in theedittransform_to_pdf_module.F90transform_to_pdf_module.F90d0fdb430ac89f446a02c3fc2a04cfeb83bf861031549729862000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I temporarily set l_clip_extreme_chi_sample_pts back to false in the" I am setting l_clip_extreme_chi_sample_pts back to true for use in E3SM-CLUBB-SILHS. This reverts commit 677c6f9d54ef542325ca3308980c6c22cac6207a. 2019-02-09 08:31:02 -0800d0fdb430ac89f446a02c3fc2a04cfeb83bf86103Revert "I temporarily set l_clip_extreme_chi_sample_pts back to false in the"edittransform_to_pdf_module.F90latin_hypercube_driver_module.F902949da772ae9ce183ecb9017dbd7d5bd044545761550688193000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe value of nz is passed into SILHS, so we don't need to use gr%nz. 2019-02-20 12:43:13 -06002949da772ae9ce183ecb9017dbd7d5bd04454576The value of nz is passed into SILHS, so we don't need to use gr%nz.editlatin_hypercube_driver_module.F90advance_xm_wpxp_module.F90lapack_wrap.F90719a2e336400711fd23caf13f000f9b76bc1cbe61552087005000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI improved the error messages when LU decomp. fails within advance_xm_wpxp_module.F90. 2019-03-08 17:16:45 -0600719a2e336400711fd23caf13f000f9b76bc1cbe6I improved the error messages when LU decomp. fails withineditadvance_xm_wpxp_module.F90editlapack_wrap.F90advance_xm_wpxp_module.F909bdd16bbeac12acbb5cd1abacd3651e9fb9864eb1552501314000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduImproved error message prints in advance_xm_wpxp. 2019-03-13 13:21:54 -05009bdd16bbeac12acbb5cd1abacd3651e9fb9864ebImproved error message prints in advance_xm_wpxp.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F909ebad48929103e747598b00f2a5e1ca1916d7a2e1552534478000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added improved LHS and RHS print statements when a LU decomp. error occurs in advance_wp2_wp3. 2019-03-13 22:34:38 -05009ebad48929103e747598b00f2a5e1ca1916d7a2eI added improved LHS and RHS print statements when a LU decomp. error occurseditadvance_wp2_wp3_module.F90clubb_api_module.F90e89d13da7946db4a7751cacfb92a92f419f268d41552536682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added params_list to the list of variables that are accessible through clubb_api_module. 2019-03-13 23:11:22 -0500e89d13da7946db4a7751cacfb92a92f419f268d4I added params_list to the list of variables that are accessible througheditclubb_api_module.F90advance_clubb_core_module.F90sigma_sqd_w_module.F902dcd21b8d1335f13ae48c5e9202048cbdabcd7a31553795121000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the first step for updating the code that calculates sigma_sqd_w. I have included upwp^2/(up2*wp2) and vpwp^2/(vp2*wp2) in the calculation of the maximum squared correlation for the limit of sigma_sqd_w when the l_predict_upwp_vpwp flag is enabled. When the l_predict_upwp_vpwp flag is turned off, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. When the l_predict_upwp_vpwp flag in enabled (which it is by default), this revision is BIT_CHANGING. However, only a couple of cases show visible changes on the plots. Git Issue Reference: #852. 2019-03-28 12:45:21 -05002dcd21b8d1335f13ae48c5e9202048cbdabcd7a3I am making the first step for updating the code that calculates sigma_sqd_w.editadvance_clubb_core_module.F90editsigma_sqd_w_module.F90advance_clubb_core_module.F9020c0f6ab99737edaa2ba6f320ba059ab7fc3783f1553982073000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a log-law height dependence to the code that diagnoses tau directly, rather than diagnosing the mixing length, Lscale (l_diag_Lscale_from_tau = .true.). However, that option is set to .false. by default, and hence the nightly test results should be unchanged. For #842. 2019-03-30 16:41:13 -050020c0f6ab99737edaa2ba6f320ba059ab7fc3783fI added a log-law height dependence to the code that diagnoseseditadvance_clubb_core_module.F90clubb_api_module.F905c39d243769b471253986d92bdfb11d92ae08d5b1556160033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added fill_holes_hydromet_api to clubb_api_module.F90. 2019-04-24 21:40:33 -05005c39d243769b471253986d92bdfb11d92ae08d5bI added fill_holes_hydromet_api to clubb_api_module.F90.editclubb_api_module.F90mt95.f90stats_variables.F90model_flags.F90gmres_cache.F901dd81aca877e9ea8bfa88c91c46fcf5e611852851558450464000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a new python script, check_for_missing_threadprivate.py, which checks whether a module variable in CLUBB or SILHS has been declared but not designated as a threadprivate. In such a case, the variables are not thread safe and different threads may store a variable in the same memory location, causing errors. In particular, such an omission may cause CAM-CLUBB-SILHS to produce different results when different numbers of openmp threads are selected. I then added some threadprivate statements in order to make the test pass. For larson-group/cam#121. 2019-05-21 09:54:24 -05001dd81aca877e9ea8bfa88c91c46fcf5e61185285I added a new python script, check_for_missing_threadprivate.py,editmodel_flags.F90editmt95.f90editgmres_cache.F90editstats_variables.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90pdf_closure_module.F90pdf_parameter_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90variables_diagnostic_module.F90variables_prognostic_module.F9072bfbae28a4d94532738cb031a1a5620caa78e3e1559079583000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834 2019-05-28 16:39:43 -050072bfbae28a4d94532738cb031a1a5620caa78e3eModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834editclubb_api_module.F90editvariables_prognostic_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editnumerical_check.F90editsetup_clubb_pdf_params.F90editvariables_diagnostic_module.F90editpdf_parameter_module.F90editstats_clubb_utilities.F90editpdf_closure_module.F90silhs_api_module.F90silhs_importance_sample_module.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F9043dd087ae5586695e9b7d92a7299cbee7c04042c1559079583000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834 2019-05-28 16:39:43 -050043dd087ae5586695e9b7d92a7299cbee7c04042cModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834editsilhs_api_module.F90editlatin_hypercube_driver_module.F90editest_kessler_microphys_module.F90editlh_microphys_var_covar_module.F90editsilhs_importance_sample_module.F90variables_diagnostic_module.F90variables_prognostic_module.F902f805be18b00c5bb0cb7a0fd6133372c91513b961559173799000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed dycoms restart run failure. The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834 2019-05-29 18:49:59 -05002f805be18b00c5bb0cb7a0fd6133372c91513b96Fixed dycoms restart run failure. The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834editvariables_prognostic_module.F90editvariables_diagnostic_module.F90FileForTestingUpdateScript.txtfae81b119a174f67903ecdf4a576eb7b83f3a9111559313403000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded temp test file Adding a test file to verify wrf updates are working 2019-05-31 09:36:43 -0500fae81b119a174f67903ecdf4a576eb7b83f3a911Added temp test fileaddFileForTestingUpdateScript.txtFileForTestingUpdateScript.txtcb11bc29e16abcdf34202a84e8c2ea5d7e3afbb11559313981000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove test file The wrf update is working now, no need to keep this file around. 2019-05-31 09:46:21 -0500cb11bc29e16abcdf34202a84e8c2ea5d7e3afbb1Remove test filedeleteFileForTestingUpdateScript.txtadvance_clubb_core_module.F90300de16a3e09fca0d7e720a1e3755832aff3098b1561766277000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical. 2019-06-28 18:57:57 -0500300de16a3e09fca0d7e720a1e3755832aff3098bAdding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical.editadvance_clubb_core_module.F90Skx_module.F9025e23c9a39541b8b5b4390afe03350b95bb9e5391562022485000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOptimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases. 2019-07-01 18:08:05 -050025e23c9a39541b8b5b4390afe03350b95bb9e539Optimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases.editSkx_module.F90parameters_tunable.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F90parameter_indices.F907fd2d937257edeb8764cce7e742ab680900441751562182842000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequency 2019-07-03 14:40:42 -05007fd2d937257edeb8764cce7e742ab68090044175ticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequencyeditparameters_tunable.F90editadvance_clubb_core_module.F90editstats_variables.F90editstats_zm_module.F90editparameter_indices.F90adg1_adg2_3d_luhar_pdf.F901f2facc146cb5190975cca5a6387fb6e79e72d251562888255000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855 2019-07-11 18:37:35 -05001f2facc146cb5190975cca5a6387fb6e79e72d25Modifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F907036e850e9581d27aa4e2915a2e8dc7da7c77d631562956898000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReplacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855 2019-07-12 13:41:38 -05007036e850e9581d27aa4e2915a2e8dc7da7c77d63Replacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855editpdf_closure_module.F90pdf_utilities.F90new_tsdadg_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_pdf_main.F90a6744484daca24377722de22d516fe1931d6ac671562976298000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855 2019-07-12 19:04:58 -0500a6744484daca24377722de22d516fe1931d6ac67Making procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90editnew_pdf_main.F90editpdf_utilities.F90editnew_tsdadg_pdf.F90editpdf_closure_module.F90LY93_pdf.F903d127ce9735789aaa773085437c70ea0ad7febb91562976519000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMissed one 2019-07-12 19:08:39 -05003d127ce9735789aaa773085437c70ea0ad7febb9Missed oneeditLY93_pdf.F90calc_pressure.F90e6b21ea2242dbb344bf34cebb0bbd9a3e7ea77311563325211000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new file, calc_pressure.F90, which contains code for initializing and updating the vertical profile of pressure and exner. 2019-07-16 20:00:11 -0500e6b21ea2242dbb344bf34cebb0bbd9a3e7ea7731I have added a new file, calc_pressure.F90, which contains code for initializingaddcalc_pressure.F90advance_clubb_core_module.F90clubb_api_module.F90calc_pressure.F90402505b5c37287ccd4d00e615b00b20c0c1becae1563416347000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated CLUBB so that pressure is updated after mean fields have been advanced every timestep. The results are BIT_CHANGING. 2019-07-17 21:19:07 -0500402505b5c37287ccd4d00e615b00b20c0c1becaeI updated CLUBB so that pressure is updated after mean fields have beeneditclubb_api_module.F90editadvance_clubb_core_module.F90editcalc_pressure.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90db9f32467f1f0d7cd7a8f25054508fa61e3837581563833748000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855 2019-07-22 17:15:48 -0500db9f32467f1f0d7cd7a8f25054508fa61e383758Removing gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855editadvance_clubb_core_module.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90gmres_wrap.F90gmres_cache.F90csr_matrix_module.F90427b92e4f01613d6f91ab932b002d7524a4a69fe1563838713000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855 2019-07-22 18:38:33 -0500427b92e4f01613d6f91ab932b002d7524a4a69feForgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855deletecsr_matrix_module.F90deletegmres_cache.F90deletegmres_wrap.F90parameters_tunable.F90stats_variables.F90stats_zm_module.F90advance_clubb_core_module.F90parameter_indices.F902d454818095f731d3864a0438459c86fc6bc48e41563920145000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnissue #842 We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. Also, tau_wp2_zm and tau_xp2_zm are added in output list. 2019-07-23 17:15:45 -05002d454818095f731d3864a0438459c86fc6bc48e4issue #842editparameters_tunable.F90editstats_variables.F90editparameter_indices.F90editstats_zm_module.F90editadvance_clubb_core_module.F90stats_zm_module.F90parameters_tunable.F90stats_variables.F90advance_clubb_core_module.F90parameter_indices.F90ea09dc1146deb9249293bae86a80288eb8cf98ce1563986631000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. Also, tau_wp2_zm and tau_xp2_zm are added in output list. issue #842 2019-07-24 11:43:51 -0500ea09dc1146deb9249293bae86a80288eb8cf98ceWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.editparameter_indices.F90editstats_zm_module.F90editparameters_tunable.F90editstats_variables.F90editadvance_clubb_core_module.F90stats_zm_module.F90advance_clubb_core_module.F90stats_variables.F90parameters_tunable.F90e3ffdf57d28b9601a073195721f51f94b85ef2cd1563986774000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842) 2019-07-24 11:46:14 -0500e3ffdf57d28b9601a073195721f51f94b85ef2cdWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)editstats_zm_module.F90editadvance_clubb_core_module.F90editstats_variables.F90editparameters_tunable.F90advance_clubb_core_module.F905e7fdb331acf7bb7b479c37b1195df9b3acefc9f1563988934000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 Correct my accidental deletion 2019-07-24 12:22:14 -05005e7fdb331acf7bb7b479c37b1195df9b3acefc9fUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90mixing_length.F90advance_clubb_core_module.F90b3c3dc624ed09e4b8021ff3fd7596a9603e6b2911564098351000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly) 2019-07-25 18:45:51 -0500b3c3dc624ed09e4b8021ff3fd7596a9603e6b291We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)editmixing_length.F90editadvance_clubb_core_module.F90mono_flux_limiter.F90185f2febb78c667d4bd6d22da4400587abf873d91564166838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduEfficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855 2019-07-26 13:47:18 -0500185f2febb78c667d4bd6d22da4400587abf873d9Efficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855editmono_flux_limiter.F90mono_flux_limiter.F904e11b0aaa1aac032723d34da281c8604363d37d41564427207000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855 2019-07-29 14:06:47 -05004e11b0aaa1aac032723d34da281c8604363d37d4This should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855editmono_flux_limiter.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F9011e94b26a81887e767bbe3088dcf879951147d8d1564427709000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnAn additional damping is added to the invrs_tau term in the C8 equation. ticket #842 invrs_tau_wp3_zm = invrs_tau_wp2_zm & + C_invrs_tau_N2_clear_wp3 * sqrt( max( zero_threshold, & zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) ) ) & * min(one, max(zero_threshold, one & - ( (ice_supersat_frac_zm - 0.005_core_rknd )/(0.01- 0.005_core_rknd) ) ) ) C_invrs_tau_N2_clear_wp3 is tunable with its defalut value of 0. 2019-07-29 14:15:09 -050011e94b26a81887e767bbe3088dcf879951147d8dAn additional damping is added to the invrs_tau term in the C8 equation. ticket #842editadvance_clubb_core_module.F90editparameter_indices.F90editparameters_tunable.F90mono_flux_limiter.F9026d56dd9fc34a7a2c2a75531877ce80e5d0dfdd41564431150000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations. 2019-07-29 15:12:30 -050026d56dd9fc34a7a2c2a75531877ce80e5d0dfdd4Adding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations.editmono_flux_limiter.F90stats_zm_module.F90advance_clubb_core_module.F90stats_variables.F902b595277fc89333b4662fbe5f8ad42cf85f609e71564532469000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8. Tau_wp3_zm is added in output list. Ticket #842 2019-07-30 19:21:09 -05002b595277fc89333b4662fbe5f8ad42cf85f609e7We use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8.editstats_zm_module.F90editadvance_clubb_core_module.F90editstats_variables.F90adg1_adg2_3d_luhar_pdf.F9080905eb2df7a944184abc1c502abe3ce7555da7e1564601051000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855 2019-07-31 14:24:11 -050080905eb2df7a944184abc1c502abe3ce7555da7eChanging ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90calc_pressure.F907d01c3630acdd2ca14d9201b66aff0d81502d05f1564611614000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855 2019-07-31 17:20:14 -05007d01c3630acdd2ca14d9201b66aff0d81502d05fPulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855editcalc_pressure.F90adg1_adg2_3d_luhar_pdf.F90a60a7deb0a1df72dfa3601a043b4ddb001daab2c1564611783000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855 2019-07-31 17:23:03 -0500a60a7deb0a1df72dfa3601a043b4ddb001daab2cRenaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F90915547ce2354ea058ecb18b93ef84775bc2e17eb1564696319000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduEfficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855. 2019-08-01 16:51:59 -0500915547ce2354ea058ecb18b93ef84775bc2e17ebEfficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855.editpdf_closure_module.F90pdf_closure_module.F901f578b33392b16cfa7367aa6a114c1f7352d984e1564708347000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855 2019-08-01 20:12:27 -05001f578b33392b16cfa7367aa6a114c1f7352d984eModifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855editpdf_closure_module.F90advance_xm_wpxp_module.F904504e3baf5bf7fec8011d83e2d8656712d9946071565219850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855 2019-08-07 18:17:30 -05004504e3baf5bf7fec8011d83e2d8656712d994607Refactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90eb88df13288af2a9454f5d34f20fdda75b3ac19e1565303811000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-08-08 17:36:51 -0500eb88df13288af2a9454f5d34f20fdda75b3ac19eUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F9062f72f15b94edb88e01a1bd031faa32e321edbf11565303976000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-08-08 17:39:36 -050062f72f15b94edb88e01a1bd031faa32e321edbf1Update advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90advance_helper_module.F90ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f061565382207000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI switched on direct diagnosis of tau rather than Lscale. That is, I set l_diag_Lscale_from_tau = .true. Thus, this commit is BIT_CHANGING. Because diagnosing tau changes answers, I retuned CLUBB, taking the opportunity to add some features seem better justified. For instance, we now damp wp2 using tke (l_damp_wp2_using_em = .true.) because doing so is more standard in turbulence modeling and because it may help reduce damping on Sc clouds. C7 is allowed to become larger in statically stable layers (l_use_C7_Richardson = .true.) because that is what the LES of Heinze show, and because doing so might help limit gravity waves above cloud. Many parameters have been retuned. I set C2rtthl = C2rt = C2thl because it seems more justifiable and because doing so produces the correct sign of wprtp_bp in Cu layers. Also, the "b" parameters have been set equal to the non-"b" parameters in order to reduce the number of tunable parameters. The "b" parameters were based on skewness, which is hard to control and tune. Instead, with this revised version, the tuning parameters are based mostly on thlm, which is more robust. I set C15=0 because this term is complex and hard to justify. c_K8 was increased because it smooths the solutions without dominating the wp3 budget. beta was reduced in order to make wp2xp larger and wpxp2 smaller. I included a bug fix to Cx_fnc_Richardson, which prevents C7 and C11 from exceeding the maximum set by Cx_max. The brunt vaisala frequency is reduced for slightly stable layers in order to allow Sc layers to remain well mixed. Further tuning is needed to reduce oscillations and temporal noise. Also, the momentum fields --- upwp, vpwp, up2, and vp2 --- need to be retuned. Otherwise, the results are comparable to the prior default. We're expecting a speed-up of 10% to 15% because computing CLUBB's mixing length directly is so costly. For #842. 2019-08-09 15:23:27 -0500ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f06I switched on direct diagnosis of tau rather than Lscale.editmodel_flags.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90calc_pressure.F90a3f5913c59b8c599216b06beb6650b779783f0d11565627451000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the pressure initialization for cases that use sounding that is given in terms of pressure coordinates so that the initial profile of pressure is consistent with the pressure update code. This code is BIT_CHANGING for cases that use pressure coordinates in their soundings (MC3E, TWP-ICE, and the CGILS cases). 2019-08-12 11:30:51 -0500a3f5913c59b8c599216b06beb6650b779783f0d1I updated the pressure initialization for cases that use sounding that is giveneditcalc_pressure.F90calc_pressure.F90e573fabcb13ba98b412ce4ce75ade6b6f2ec50631565639019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the function calculate_thvm from a pre-defined vector of size nz to an elemental function. The results in GrADS output files from this revision are an exact match to the result in GrADS output files from the previous revision for all cases. A quick test of running BOMEX 5 times both before and after the changes showed a 1.16% speed increase for the new version with the elemental function. 2019-08-12 14:43:39 -0500e573fabcb13ba98b412ce4ce75ade6b6f2ec5063I changed the function calculate_thvm from a pre-defined vector of size nz toeditcalc_pressure.F90advance_clubb_core_module.F9051a86a3f221fffeef2d437cbe76a1445816cc3b21565640439000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the calculation of thvm in advance_clubb_core to use the calculate_thvm function. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-08-12 15:07:19 -050051a86a3f221fffeef2d437cbe76a1445816cc3b2I updated the calculation of thvm in advance_clubb_core to use theeditadvance_clubb_core_module.F90stats_variables.F909a3e6d37f6350cfbe66595183c646941b367559e1565650355000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler. 2019-08-12 17:52:35 -05009a3e6d37f6350cfbe66595183c646941b367559eAdding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler.editstats_variables.F90advance_xp2_xpyp_module.F90973528097e0ce042fbd3820dc7fef4bab9d930f51565657839000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855 2019-08-12 19:57:19 -0500973528097e0ce042fbd3820dc7fef4bab9d930f5Adding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855editadvance_xp2_xpyp_module.F90setup_clubb_pdf_params.F908e208d5eb9ed5621198bc25ed7ce599b6fd3b32c1565813536000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626 2019-08-14 15:12:16 -05008e208d5eb9ed5621198bc25ed7ce599b6fd3b32cChanging where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626editsetup_clubb_pdf_params.F90adg1_adg2_3d_luhar_pdf.F9041a78a1c734861469e5bcd2469a6f150563b56e61565886799000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a test where I changed subroutine ADG1_w_closure from using nested where statements to using if statements within the context of an elemental subroutine. My notes are below: =============================================================================== Here's an intriguing idea to try in place of nested "where" statements. The article at: https://data-science-austria.at/2018/12/24/the-need-for-speed-part-2-c-vs-fortran-vs-c/ says that using FORTRAN ELEMENTAL subroutines and functions is just as fast as using FORTRAN serial loops with -O3 optimization (which is what we've been doing for optimization). The use of elemental subprograms contains many advantages: 1) The subprogram becomes much more versatile, because it can be used for scalars as well as arrays of varying sizes and dimensions. 2) In our case, the changesets become easier to follow, as they are basically a change from where statements to if ... then statements. There are no additional do loops and loop indices needed. These additional statements and indices can be confusing when comparing code differences and they clutter-up (a.k.a. uglify) subprograms. 3) The article states that this method should be just as fast for vectors of size 1000 and less. For CLUBB, this would be the number of height levels, which don't normally exceed 128. I tested the old version (where statements) and the new version for multiple runs of BOMEX and ARM, and the timings were equivalent. 4) This avoids the problem of code entering the portion of a "where" statement that it shouldn't be and crashing when floating point trapping is enabled. The use of elemental subprograms has the following limitations: 1) All input and output variables must be of the same size and dimension. In other words, whatever code is calling the elemental subroutine must feed it, as well as take as output, either all scalar values, or all vectors of size nz, or all 2-D arrays of size nx by ny, etc. 2) Elemental subprograms are also pure subprograms, so they have all the restrictions of pure subprograms (no print statements, etc.). ================================================================================ The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Obligatory Larson Group GitHub Issue Reference: #859. 2019-08-15 11:33:19 -050041a78a1c734861469e5bcd2469a6f150563b56e6I am committing a test where I changed subroutine ADG1_w_closureeditadg1_adg2_3d_luhar_pdf.F90advance_xp2_xpyp_module.F9002066c0bf79abbe15aac432b24aee2a17798b09d1566416566000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862 2019-08-21 14:42:46 -050002066c0bf79abbe15aac432b24aee2a17798b09dChanging determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862editadvance_xp2_xpyp_module.F90pdf_closure_module.F90e7c7ca60b79b960a8d9b457dd866359044bb23ce1566428123000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFinally fixing line length error in pdf_closure 2019-08-21 17:55:23 -0500e7c7ca60b79b960a8d9b457dd866359044bb23ceFinally fixing line length error in pdf_closureeditpdf_closure_module.F90matrix_operations.F90lapack_wrap.F90lapack_interfaces.F903cdd4d6ac73bb48c637368df6ac83377017914ac1566603423000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861 2019-08-23 18:37:03 -05003cdd4d6ac73bb48c637368df6ac83377017914acAdding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861editmatrix_operations.F90editlapack_wrap.F90addlapack_interfaces.F90transform_to_pdf_module.F90122f2c7d0fd6f3c3b78cf43e4d6eb5d0fcad04421566603423000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861 2019-08-23 18:37:03 -0500122f2c7d0fd6f3c3b78cf43e4d6eb5d0fcad0442Adding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861edittransform_to_pdf_module.F90advance_xm_wpxp_module.F90feb1fe6742605fd9d6c20e12ee69991b52ed0b541567019770000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862 2019-08-28 14:16:10 -0500feb1fe6742605fd9d6c20e12ee69991b52ed0b54Adding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862editadvance_xm_wpxp_module.F90stats_zm_module.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F90advance_xm_wpxp_module.F90advance_helper_module.F90f165ae4ca0cd02d825c185eaba700b0c6c715fd91567811198000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduThis commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc. Some other changes were made in this commit. They are 1) we modified subroutine calc_brunt_vaisala_freq_sqd by adding brunt_vaisala_freq_sqd_mixed, although brunt_vaisala_freq_sqd_dry is still used as default. 2) cloud fracting was considered in brunt_vaisala_freq_sqd as well as compute_Cx_Fnc_Richardson. 3) C_invrs_tau_N2_wpxp was added as a new parameter. 2019-09-06 18:06:38 -0500f165ae4ca0cd02d825c185eaba700b0c6c715fd9This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.editstats_zm_module.F90editadvance_helper_module.F90editparameter_indices.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editparameters_tunable.F90advance_helper_module.F90ac210548b0f17a1dfab455f9b1d46e6011af8e651567963574000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_helper_module.F90 2019-09-08 12:26:14 -0500ac210548b0f17a1dfab455f9b1d46e6011af8e65Update advance_helper_module.F90editadvance_helper_module.F90advance_clubb_core_module.F9061228ff386d06aedecc69fb4797122fc3b1dc52a1567963704000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-09-08 12:28:24 -050061228ff386d06aedecc69fb4797122fc3b1dc52aUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_helper_module.F909c87ac3db2fa3a072b024b295dbb2931961e256e1568044019000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_helper_module.F90 Fixed a typo which cause a fail in Uninitialized Variables Test. 2019-09-09 10:46:59 -05009c87ac3db2fa3a072b024b295dbb2931961e256eUpdate advance_helper_module.F90editadvance_helper_module.F90parameters_tunable.F90c11c7882e433749159918d89176c892aa53b823e1568049431000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626 2019-09-09 12:17:11 -0500c11c7882e433749159918d89176c892aa53b823eAdding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626editparameters_tunable.F90new_hybrid_pdf.F9074b922513308db7dc1355a55eb6c90974943d1701568667521000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a file for the new hybrid PDF, which combines the w equation set from the new PDF (setter variable) and an equation set for the responder variables similar to what is used for ADG1. 2019-09-16 15:58:41 -050074b922513308db7dc1355a55eb6c90974943d170I am adding a file for the new hybrid PDF, which combines the w equation setaddnew_hybrid_pdf.F90new_hybrid_pdf.F906ae78a67f971b37c6fdf70999e812c2cbba564371568672384000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the function to calculate the implicit coefficient for the wp4 term, as well as added the function to calculate the implicit coefficient for the wp2xp terms for the new hybrid PDF. 2019-09-16 17:19:44 -05006ae78a67f971b37c6fdf70999e812c2cbba56437I updated the function to calculate the implicit coefficient for the wp4 term,editnew_hybrid_pdf.F90new_hybrid_pdf.F901cfb74544fc88bd03f57c8764ce100ee8a0651ea1568729503000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made some changes to new_hybrid_pdf.F90 so that it would compile in its current state. 2019-09-17 09:11:43 -05001cfb74544fc88bd03f57c8764ce100ee8a0651eaI made some changes to new_hybrid_pdf.F90 so that it would compile in itseditnew_hybrid_pdf.F90new_hybrid_pdf.F909636e0e0bb6f1d6447761880fbbb34a0b69365ce1568744001000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI edited that subroutine that calculates the implicit coefficient and explicit term for the xp2 equation (wpxp2 term) for the new hybrid PDF. 2019-09-17 13:13:21 -05009636e0e0bb6f1d6447761880fbbb34a0b69365ceI edited that subroutine that calculates the implicit coefficient and expliciteditnew_hybrid_pdf.F90new_hybrid_pdf.F9091d3418f0eb9a96a0dabdac245bf463212f0bec61568758968000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the subroutine that calculates the implicit coefficient and explicit term for the wpxpyp term in the xpyp predictive equation for the new hybrid PDF. 2019-09-17 17:22:48 -050091d3418f0eb9a96a0dabdac245bf463212f0bec6I updated the subroutine that calculates the implicit coefficient and expliciteditnew_hybrid_pdf.F90stats_variables.F90stats_lh_zt_module.F90stats_zt_module.F909b7da5ab8f5fcef54a61b7174324e236c012f9971568990372000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduReplaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves. see #867 2019-09-20 09:39:32 -05009b7da5ab8f5fcef54a61b7174324e236c012f997Replaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves.editstats_lh_zt_module.F90editstats_zt_module.F90editstats_variables.F90new_hybrid_pdf_main.F90b535997cda4d30fb1751ebc4ba76d412462755031569341507000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the new hybrid PDF. 2019-09-24 11:11:47 -0500b535997cda4d30fb1751ebc4ba76d41246275503I am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the newaddnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F90d03f5db1bbbb97e9db44aecd763d9de81c7cd8411569521049000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI worked more the functions for the new hybrid PDF. 2019-09-26 13:04:09 -0500d03f5db1bbbb97e9db44aecd763d9de81c7cd841I worked more the functions for the new hybrid PDF.editnew_hybrid_pdf_main.F90advance_xp2_xpyp_module.F903b3fa0f343d8202f19fe1f3e4f480f9efca0eae11570226820000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855 2019-10-04 17:07:00 -05003b3fa0f343d8202f19fe1f3e4f480f9efca0eae1Refactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855editadvance_xp2_xpyp_module.F90pdf_utilities.F90setup_clubb_pdf_params.F907b4d6d73b34681ce3ebb3b2133a1b417178b882c1570539011000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed all the PDF utility functions in pdf_utilities.F90 to elemental functions. 2019-10-08 07:50:11 -05007b4d6d73b34681ce3ebb3b2133a1b417178b882cI changed all the PDF utility functions in pdf_utilities.F90 to elementaleditsetup_clubb_pdf_params.F90editpdf_utilities.F90pdf_utilities.F90fc7dd9a9251d4862a924755633e0242aaca241411570541067000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot a "then" to go with an "elseif". 2019-10-08 08:24:27 -0500fc7dd9a9251d4862a924755633e0242aaca24141I forgot a "then" to go with an "elseif".editpdf_utilities.F90est_kessler_microphys_module.F90latin_hypercube_driver_module.F90silhs_importance_sample_module.F90b679ed72231c603528baea842d02f33617fe92aa1570566489000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduRemoved all use statements involving silhs flags from the SILHS files below the API level and putting the flags into the argument lists. This is the first step to realize a derived type silhs_config_flags_type which holds all SILHS flags. The changes do not break the host models and lead to bit for bit identical results. #856 2019-10-08 15:28:09 -0500b679ed72231c603528baea842d02f33617fe92aaRemoved all use statements involving silhs flags from the SILHS files below the API level and putting the flags into the argument lists.editlatin_hypercube_driver_module.F90editest_kessler_microphys_module.F90editsilhs_importance_sample_module.F90advance_xp2_xpyp_module.F9009460e50e11427c81d50af8196badfb77207e2871570570170000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855 2019-10-08 16:29:30 -050009460e50e11427c81d50af8196badfb77207e287Adding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90a6bf3fc74cfad569977dc2740bedeca0d63737c01570579988000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855 2019-10-08 19:13:08 -0500a6bf3fc74cfad569977dc2740bedeca0d63737c0Adding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855editadvance_xp2_xpyp_module.F90advance_xm_wpxp_module.F904e3165fe96a6b2071a388b787d2159b326a523981570831072000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855 2019-10-11 16:57:52 -05004e3165fe96a6b2071a388b787d2159b326a52398Refactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855editadvance_xm_wpxp_module.F90new_hybrid_pdf_main.F909e77b1ad9feb229702bb7d2618aa870e8ca0476f1571148245000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to build the driver subroutine for the new hybrid PDF. 2019-10-15 09:04:05 -05009e77b1ad9feb229702bb7d2618aa870e8ca0476fI am continuing to build the driver subroutine for the new hybrid PDF.editnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F902636b911d7c0ada3c7e221d34684aa2a9a6793d51571244715000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to work on the driver file for the new hybrid PDF. 2019-10-16 11:51:55 -05002636b911d7c0ada3c7e221d34684aa2a9a6793d5I am continuing to work on the driver file for the new hybrid PDF.editnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F9019bfff3f4f90144b30c8143fb4fe50d5d8085c5a1571316332000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the main parts of the driver subroutine for the new hybrid PDF. 2019-10-17 07:45:32 -050019bfff3f4f90144b30c8143fb4fe50d5d8085c5aI have completed the main parts of the driver subroutine for the new hybrid PDF.editnew_hybrid_pdf_main.F90pdf_parameter_module.F90new_hybrid_pdf_main.F90363763a4cf6fd7200c76a6da2d71925fec4cbfa01571324271000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe code for the new hybrid PDF now compiles. 2019-10-17 09:57:51 -0500363763a4cf6fd7200c76a6da2d71925fec4cbfa0The code for the new hybrid PDF now compiles.editpdf_parameter_module.F90editnew_hybrid_pdf_main.F90pdf_closure_module.F90bd601ca08c9f0daeb8fa98f4579d7150bea6d3811571324344000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added an entry for the new hybrid PDF. 2019-10-17 09:59:04 -0500bd601ca08c9f0daeb8fa98f4579d7150bea6d381I added an entry for the new hybrid PDF.editpdf_closure_module.F90new_hybrid_pdf.F90new_hybrid_pdf_main.F9079f0955fbe6e20587d26ad6b920154b075ef784f1571339325000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the new hybrid PDF to the G unit tests. 2019-10-17 14:08:45 -050079f0955fbe6e20587d26ad6b920154b075ef784fI have added the new hybrid PDF to the G unit tests.editnew_hybrid_pdf.F90editnew_hybrid_pdf_main.F90new_hybrid_pdf.F90b222dcbc135f4e89df4cfff38be930d9e8772b3b1571345095000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0. Numerically, this can happen when numerical round-off error causes epsilon-sized negative values. When this happens, reset the PDF component variance to 0. 2019-10-17 15:44:55 -0500b222dcbc135f4e89df4cfff38be930d9e8772b3bMathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0.editnew_hybrid_pdf.F90advance_clubb_core_module.F90pdf_closure_module.F90variables_prognostic_module.F908cfdc21a73477317533a6323d7bb6ffdd4a177f71571416566000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to interface the call to the new hybrid PDF with pdf_closure and have fed the necessary variables in from advance_clubb_core. 2019-10-18 11:36:06 -05008cfdc21a73477317533a6323d7bb6ffdd4a177f7I added code to interface the call to the new hybrid PDF with pdf_closureeditadvance_clubb_core_module.F90editpdf_closure_module.F90editvariables_prognostic_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90advance_xp2_xpyp_module.F902b6ff6cccdbc1d75702d531d5bd62cd5aef226c91571530046000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI interfaced the implicit coefficients and explicit terms used in the turbulent advection code for the new hybrid PDF. The PDF can now be run interactively for wp3, all wpxp (wprtp, wpthlp, upwp, vpwp, and wpsclrp), rtp2, thlp2, and rtpthlp. 2019-10-19 19:07:26 -05002b6ff6cccdbc1d75702d531d5bd62cd5aef226c9I interfaced the implicit coefficients and explicit terms used in the turbulenteditadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90e2bbcece49c6eb70c16dfdd66522d1fea66a48b71571530362000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a small error. The code compiles again now. 2019-10-19 19:12:42 -0500e2bbcece49c6eb70c16dfdd66522d1fea66a48b7I fixed a small error. The code compiles again now.editadvance_xp2_xpyp_module.F90silhs_api_module.F904f4e04381aef84937c9b869112d99cc77c6dea501571936471000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduUpdated the larson-group.com urls to http://carson.math.uwm.edu/larson-group 2019-10-24 12:01:11 -05004f4e04381aef84937c9b869112d99cc77c6dea50Updated the larson-group.com urls to http://carson.math.uwm.edu/larson-groupeditsilhs_api_module.F90advance_clubb_core_module.F90e19fe081dc9086a2fb47598e9e7e19187c1b4c8f1571936471000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduUpdated the larson-group.com urls to http://carson.math.uwm.edu/larson-group 2019-10-24 12:01:11 -0500e19fe081dc9086a2fb47598e9e7e19187c1b4c8fUpdated the larson-group.com urls to http://carson.math.uwm.edu/larson-groupeditadvance_clubb_core_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F9078a9b3325c2123b1215097cf3b8acd902012f5be1571949805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing down loops over transform_uniform_samples_to_pdf and resolving many if statments beforehand by copying values to new arrays with an additional sample index. This is all bit-for-bit. larson-group/clubb#869 2019-10-24 15:43:25 -050078a9b3325c2123b1215097cf3b8acd902012f5bePushing down loops over transform_uniform_samples_to_pdf and resolving many if statments beforehand by copying values to new arrays with an additional sample index. This is all bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90transform_to_pdf_module.F901a45f26705c787e80a5128acda685df304137ae61571953361000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReplacing the lapack function with a simple loop to multiply a pdf_dim x pdf_dim array by a pdf_dim vector. The arrays are too small to justify using lapack. This ends up slightly faster and allows a lot more flexibility which is going to be needed shortly. This is BIT_CHANGING, but not answer changing. larson-group/clubb#869 2019-10-24 16:42:41 -05001a45f26705c787e80a5128acda685df304137ae6Replacing the lapack function with a simple loop to multiply a pdf_dim x pdf_dim array by a pdf_dim vector. The arrays are too small to justify using lapack. This ends up slightly faster and allows a lot more flexibility which is going to be needed shortly. This is BIT_CHANGING, but not answer changing. larson-group/clubb#869edittransform_to_pdf_module.F90advance_clubb_core_module.F90a1c0be95241fc9ce40fe7f9bc8e07607a6a1042d1571956527000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code that allows CLUBB to run interactively using the new hybrid PDF. 2019-10-24 17:35:27 -0500a1c0be95241fc9ce40fe7f9bc8e07607a6a1042dI have added code that allows CLUBB to run interactively using the new hybrideditadvance_clubb_core_module.F90setup_clubb_pdf_params.F90c5a755bba80851cbaca3a58c3768f018a87113d11572019637000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the subroutine that calculates PDF component means and standard deviations for hydrometeors. I am restoring it to its former glory (before where statements or pushed down loops), but I am turning it into an elemental subroutine. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-25 11:07:17 -0500c5a755bba80851cbaca3a58c3768f018a87113d1I am updating the subroutine that calculates PDF component means and standardeditsetup_clubb_pdf_params.F90advance_clubb_core_module.F906486d4621e9999dc5c5fbb71b6ec4262bfc82a2e1572033711000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed proper thresholding on interpolated up2 and interpolated vp2 before the call to PDF closure. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-25 15:01:51 -05006486d4621e9999dc5c5fbb71b6ec4262bfc82a2eI placed proper thresholding on interpolated up2 and interpolated vp2editadvance_clubb_core_module.F90parameters_silhs.F90silhs_api_module.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F90f0b36de24cc140004601646d99a6b33f00495dbf1572035921000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI introduced the silhs_config_flags_type in clubb which now handles all SILHS config flags. Therefore I added the derived type and methods to set default values and initializing the derived type. I changed clubb_standalone so that it uses the new derived type now. The results are bit-for-bit identical. #856 2019-10-25 15:38:41 -0500f0b36de24cc140004601646d99a6b33f00495dbfI introduced the silhs_config_flags_type in clubb which now handles all SILHS config flags.editparameters_silhs.F90editsilhs_api_module.F90editlh_microphys_var_covar_module.F90editest_kessler_microphys_module.F90editlatin_hypercube_driver_module.F90new_hybrid_pdf_main.F90f66969bf1e01403e7e4694e1d11209af057162f21572039684000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a limiter to keep the maximum magnitude of the correlations of fluxes to have a upper limit of max_mag_correlation_flux (which is the limit these correlations should have anyway). 2019-10-25 16:41:24 -0500f66969bf1e01403e7e4694e1d11209af057162f2I added a limiter to keep the maximum magnitude of the correlations ofeditnew_hybrid_pdf_main.F90setup_clubb_pdf_params.F90Nc_Ncn_eqns.F90d647c75c8a71abcbf4c990562dd33bd13000d9581572096033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI upgraded Nc_Ncn_eqns.F90 to use elemental functions. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-26 08:20:33 -0500d647c75c8a71abcbf4c990562dd33bd13000d958I upgraded Nc_Ncn_eqns.F90 to use elemental functions.editsetup_clubb_pdf_params.F90editNc_Ncn_eqns.F90setup_clubb_pdf_params.F900bbfad6256a0124264bbe3ce79762551170e719b1572097496000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe new hybrid PDF also uses this bit of code that sets the correlation of w and chi, as well as the correlation of w and eta, to 0 for use in the correlation arrays to obey PDF standards. 2019-10-26 08:44:56 -05000bbfad6256a0124264bbe3ce79762551170e719bThe new hybrid PDF also uses this bit of code that sets the correlationeditsetup_clubb_pdf_params.F90new_hybrid_pdf_main.F90pdf_closure_module.F904b682669ee973988cfa6434f90837f1aa428ea111572357782000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made modifications to the new hybrid PDF so that that calculation of F_w temporarily becomes more ADG1/sigma_sqd_w-like. I also set sigma_sqd_w to 1 - F_w when the new hybrid PDF is used so that the calculation of skewness of responder variables becomes more consistent with F_w and the new hybrid PDF. 2019-10-29 09:03:02 -05004b682669ee973988cfa6434f90837f1aa428ea11I made modifications to the new hybrid PDF so that that calculation of F_weditnew_hybrid_pdf_main.F90editpdf_closure_module.F90parameters_silhs.F90silhs_api_module.F90latin_hypercube_driver_module.F905a2551405692e69f40b334072b652984eef918ab1572376290000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduMinor clean-up. Writing 'Intent(in)' in call to 'generate_uniform_sample_at_k_lh_start' and adding descriptions for input and output arguments in 'initialize_silhs_config_flags_type(_api)' and 'set_default_silhs_config_flags(_api)'. #856 2019-10-29 14:11:30 -05005a2551405692e69f40b334072b652984eef918abMinor clean-up. Writing 'Intent(in)' in call to 'generate_uniform_sample_at_k_lh_start' and adding descriptions for input and output arguments in 'initialize_silhs_config_flags_type(_api)' and 'set_default_silhs_config_flags(_api)'. #856editparameters_silhs.F90editlatin_hypercube_driver_module.F90editsilhs_api_module.F90latin_hypercube_driver_module.F904c3845a10b03b4edf2ea5347474b092d839213741572442013000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduFixed small typo I accidentally introduced in my last commit. 2019-10-30 08:26:53 -05004c3845a10b03b4edf2ea5347474b092d83921374Fixed small typo I accidentally introduced in my last commit.editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90pdf_parameter_module.F90new_pdf_main.F90new_hybrid_pdf_main.F90variables_prognostic_module.F90b401721c1caf94bec4ca3a07a63d748967c9ecc61572467624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the ability to handle scalars interactively to the new hybrid PDF. 2019-10-30 15:33:44 -0500b401721c1caf94bec4ca3a07a63d748967c9ecc6I added the ability to handle scalars interactively to the new hybrid PDF.editvariables_prognostic_module.F90editnew_pdf_main.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editpdf_closure_module.F90editpdf_parameter_module.F90editadvance_xm_wpxp_module.F90editnew_hybrid_pdf_main.F90new_hybrid_pdf.F90a775bd9a19e95bc9df8854fa1348bff049acd7471572471442000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI found a couple of spots in the new hybrid PDF where I needed to add a wp2 > 0 to the conditionals in order to avoid any potential divide-by-zeros. 2019-10-30 16:37:22 -0500a775bd9a19e95bc9df8854fa1348bff049acd747I found a couple of spots in the new hybrid PDF where I needed to addeditnew_hybrid_pdf.F90clubb_api_module.F90916c1f752b8d36ebceae827e7c1ed2dba4acbbef1572475839000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added init_pdf_implicit_coefs_terms_api to clubb_api_module.F90. 2019-10-30 17:50:39 -0500916c1f752b8d36ebceae827e7c1ed2dba4acbbefI added init_pdf_implicit_coefs_terms_api to clubb_api_module.F90.editclubb_api_module.F90clubb_api_module.F90afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da61572559447000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe variable type implicit_coefs_terms needs to be made public so that it is available to host models. 2019-10-31 17:04:07 -0500afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da6The variable type implicit_coefs_terms needs to be made publiceditclubb_api_module.F90new_hybrid_pdf_main.F90e62b062d69789b8034b91fddd0454be4a18f6e621572565760000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the value of the coefficient in the F_w equation to 0.45 because it produces a result that is more similar to ADG1 results for most cases. This is a better spot to start testing, development, and tuning from. 2019-10-31 18:49:20 -0500e62b062d69789b8034b91fddd0454be4a18f6e62I changed the value of the coefficient in the F_w equation to 0.45editnew_hybrid_pdf_main.F90advance_clubb_core_module.F90clubb_api_module.F907a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246c1572707965000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_core and then back in again. They were temporarily being stored through use statements within advance_clubb_core. This does not change results of standalone CLUBB. However, prior to this change, these variables weren't being allocated for host model runs. This was causing a segmentation fault. 2019-11-02 10:19:25 -05007a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246cI am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_coreeditadvance_clubb_core_module.F90editclubb_api_module.F90parameters_silhs.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90750120959776e5f83b91836bc8315f9781af0e361573008686000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReplacing algorithm that calculates the inverse CDF. It's only accurate to single precision, so the uniform samples are clipped to be within a valid range for the algorithm to always be accurate. This is BIT_CHANGING for silhs enabled cases, but plots are visibly identical for rico_silhs. larson-group/clubb#869 2019-11-05 20:51:26 -0600750120959776e5f83b91836bc8315f9781af0e36Replacing algorithm that calculates the inverse CDF. It's only accurate to single precision, so the uniform samples are clipped to be within a valid range for the algorithm to always be accurate. This is BIT_CHANGING for silhs enabled cases, but plots are visibly identical for rico_silhs. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90editparameters_silhs.F90silhs_api_module.F90parameters_silhs.F9029336584d17f867331cf3cbad7e7d2d2180a8c811573139605000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have added a print subroutine for the SILHS configurable flags. #856 2019-11-07 09:13:25 -060029336584d17f867331cf3cbad7e7d2d2180a8c81I have added a print subroutine for the SILHS configurable flags. #856editsilhs_api_module.F90editparameters_silhs.F90advance_xp2_xpyp_module.F90e9b085012b811e7726988c0b3bbec21bb064ce111573243077000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have started the process of adding the coding infrastructure for having different up2 and vp2 LHS for the new hybrid PDF. The default ADG1 code remains unchanged. 2019-11-08 13:57:57 -0600e9b085012b811e7726988c0b3bbec21bb064ce11I have started the process of adding the coding infrastructureeditadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90f48d9abfdfb56389af74f9542a229864cee47ac61573311461000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the addition of the ability to use different up2 and vp2 LHS for the new hybrid PDF. The default ADG1 PDF remains unaffected by these changes. 2019-11-09 08:57:41 -0600f48d9abfdfb56389af74f9542a229864cee47ac6I have completed the addition of the ability to use different up2editadvance_xp2_xpyp_module.F90parameters_tunable.F90model_flags.F90clubb_api_module.F906fa1cf9c290c207154a211f5fc860668576181d61573594095000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856 2019-11-12 15:28:15 -06006fa1cf9c290c207154a211f5fc860668576181d6I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856editmodel_flags.F90editclubb_api_module.F90editparameters_tunable.F90setup_clubb_pdf_params.F90a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed761573597176000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made the l_calc_w_corr code (turned off by default) run again by changing subroutine calc_corr_w_hm_n to an elemental subroutine. Previously, runtime exceptions were found within the "where" statements. 2019-11-12 16:19:36 -0600a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed76I made the l_calc_w_corr code (turned off by default) run again byeditsetup_clubb_pdf_params.F90model_flags.F90f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860d1573750479000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute. This is done in preparation for the introduction of the 'clubb_config_flags_type'. #856 2019-11-14 10:54:39 -0600f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860dI added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.editmodel_flags.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90780fe29dcb36ae1ec349ba5c65f090059f2036851573771919000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac', 'l_min_wp2_from_corr_wx', and 'l_min_xp2_from_corr_wx' covered. #856 2019-11-14 16:51:59 -0600780fe29dcb36ae1ec349ba5c65f090059f203685I have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac',editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90mean_adv.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F9037be56d2a4b786d7f12ddd69516cb4352ada61991573842974000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm', 'l_upwind_wpxp_ta', 'l_upwind_xpyp_ta', 'l_upwind_xm_ma'. #856 2019-11-15 12:36:14 -060037be56d2a4b786d7f12ddd69516cb4352ada6199I continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm',editadvance_xp2_xpyp_module.F90editmean_adv.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90editadvance_wp2_wp3_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F909b71f7dbb101e9db7cc9806b71a84163a7ea74f81573859283000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm', 'l_call_pdf_closure_twice', 'l_use_cloud_cover', 'l_stability_correct_tau_zm', 'l_damp_wp2_using_em', 'l_do_expldiff_rtm_thlm', 'l_Lscale_plume_centered', 'l_diag_Lscale_from_tau', 'l_use_ice_latent', 'l_use_C7_Richardson', 'l_use_C11_Richardson', 'l_rcm_supersat_adj', 'l_damp_wp3_Skw_squared', and 'l_prescribed_avg_deltaz'. #856 2019-11-15 17:08:03 -06009b71f7dbb101e9db7cc9806b71a84163a7ea74f8I continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm',editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editmixing_length.F90editadvance_wp2_wp3_module.F90parameters_silhs.F90latin_hypercube_driver_module.F90fdea666372d0b76b04ca134d2b98ae4dbbbc1f711574206030000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding more clipping to the uniform sample values, and reducing the treshold. This is BIT_CHANGING. larson-group/clubb#869 2019-11-19 17:27:10 -0600fdea666372d0b76b04ca134d2b98ae4dbbbc1f71Adding more clipping to the uniform sample values, and reducing the treshold. This is BIT_CHANGING. larson-group/clubb#869editlatin_hypercube_driver_module.F90editparameters_silhs.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90683056ea199b13314d2ff762537d2330beac0ed31574362548000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp', 'l_tke_aniso', 'l_standard_term_ta', 'l_brunt_vaisala_freq_moist', 'l_use_thvm_in_bv_freq', and 'l_single_C2_Skw'. #856 2019-11-21 12:55:48 -0600683056ea199b13314d2ff762537d2330beac0ed3I continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp',editlatin_hypercube_driver_module.F90editoutput_2D_samples_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clip_explicit.F90output_netcdf.F90sigma_sqd_w_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F9063bfc28d22b334b76ebb1e8fe547ebe81c3df81a1574362548000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp', 'l_tke_aniso', 'l_standard_term_ta', 'l_brunt_vaisala_freq_moist', 'l_use_thvm_in_bv_freq', and 'l_single_C2_Skw'. #856 2019-11-21 12:55:48 -060063bfc28d22b334b76ebb1e8fe547ebe81c3df81aI continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp',editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editsetup_clubb_pdf_params.F90editadvance_helper_module.F90editclip_explicit.F90editsigma_sqd_w_module.F90editadvance_xp2_xpyp_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editoutput_netcdf.F90transform_to_pdf_module.F90f7360e20573b47bb3629dfaa9940cdce557bf91e1574367189000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging values to use core_rknd precision. larson-group/clubb#869 2019-11-21 14:13:09 -0600f7360e20573b47bb3629dfaa9940cdce557bf91eChanging values to use core_rknd precision. larson-group/clubb#869edittransform_to_pdf_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90a23116c65221afef0098e4cd2f1420a2d4c375571574377561000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCleaning up clip_transform_silhs_output and removing the X_nl_all_levs_raw variable. This is all bit-for-bit. larson-group/clubb#869 2019-11-21 17:06:01 -0600a23116c65221afef0098e4cd2f1420a2d4c37557Cleaning up clip_transform_silhs_output and removing the X_nl_all_levs_raw variable. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90editsilhs_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90db15023dbec54fe127928c413ec331202bb1708b1574379588000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging X_nl_all_levs to inout in clip_transform_silhs_output_api, this was missed in the last commit. larson-group/clubb#869 2019-11-21 17:39:48 -0600db15023dbec54fe127928c413ec331202bb1708bChanging X_nl_all_levs to inout in clip_transform_silhs_output_api, this was missed in the last commit. larson-group/clubb#869editsilhs_api_module.F90editlatin_hypercube_driver_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F9068ea8053ba6e4ef8446344550fffe60f75f84eee1574381544000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduFinished altering argument lists. This commit covers the final seven flags, which are in different namelists. This includes 'l_calc_thlp2_rad', 'l_uv_nudge', 'l_rtm_nudge', 'l_diagnose_correlations', 'l_calc_w_corr', 'l_const_Nc_in_cloud', and 'l_fix_w_chi_eta_correlations'. #856 2019-11-21 18:12:24 -060068ea8053ba6e4ef8446344550fffe60f75f84eeeFinished altering argument lists. This commit covers the final seven flags, which are in different namelists.editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90output_netcdf.F90diagnose_correlations_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F903d7dd80beb0c24b1cb5ceac4a565ae6f13fd80041574381544000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduFinished altering argument lists. This commit covers the final seven flags, which are in different namelists. This includes 'l_calc_thlp2_rad', 'l_uv_nudge', 'l_rtm_nudge', 'l_diagnose_correlations', 'l_calc_w_corr', 'l_const_Nc_in_cloud', and 'l_fix_w_chi_eta_correlations'. #856 2019-11-21 18:12:24 -06003d7dd80beb0c24b1cb5ceac4a565ae6f13fd8004Finished altering argument lists. This commit covers the final seven flags, which are in different namelists.editadvance_xm_wpxp_module.F90editstats_clubb_utilities.F90editadvance_windm_edsclrm_module.F90editoutput_netcdf.F90editsetup_clubb_pdf_params.F90editdiagnose_correlations_module.F90editadvance_clubb_core_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F9045aba5b2eeafc421549c8a6575eb30717c784dd51574466975000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing a loop down and other small performance refactorings. This is bit-for-bit. larson-group/clubb#869 2019-11-22 17:56:15 -060045aba5b2eeafc421549c8a6575eb30717c784dd5Pushing a loop down and other small performance refactorings. This is bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90model_flags.F90e27846ed5438edd18859a6fa13a44871e0f9dad71574785619000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type. However it is not used by now. #856 2019-11-26 10:26:59 -0600e27846ed5438edd18859a6fa13a44871e0f9dad7I introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type.editmodel_flags.F90silhs_api_module.F90latin_hypercube_driver_module.F9078f8417dcd7dd04ed3dda8148d1a7c23a0b3198f1576018347000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856 2019-12-10 16:52:27 -060078f8417dcd7dd04ed3dda8148d1a7c23a0b3198fI enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856editsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90stats_clubb_utilities.F90parameters_tunable.F90setup_clubb_pdf_params.F90corr_varnce_module.F90976026d16da3de89e4899700ff544352f642a3981576018347000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856 2019-12-10 16:52:27 -0600976026d16da3de89e4899700ff544352f642a398I enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856editcorr_varnce_module.F90editstats_clubb_utilities.F90editsetup_clubb_pdf_params.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editparameters_tunable.F90editmodel_flags.F90est_kessler_microphys_module.F90d37c20a5aba745fa74388467d90dbefd93b8fc1f1576252574000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have removed the 'rc_estimate' subroutine in 'src/SILHS/est_kessler_microphys_module.F90' because it was not working properly. I changed the 'autoconv_estimate' subroutine in the same file to be able to calculate both 'lh_AKm' and 'lh_rcm_avg' with it. I renamed that subroutine to 'calc_estimate'. #692 2019-12-13 09:56:14 -0600d37c20a5aba745fa74388467d90dbefd93b8fc1fI have removed the 'rc_estimate' subroutine in 'src/SILHS/est_kessler_microphys_module.F90' because it was not working properly. I changed the 'autoconv_estimate' subroutine in the same file to be able to calculate both 'lh_AKm' and 'lh_rcm_avg' with it. I renamed that subroutine to 'calc_estimate'. #692editest_kessler_microphys_module.F90advance_clubb_core_module.F90cd4f009eb87b05355ab501f2a1e7c7666bcfea7a1576263181000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI fed pdf_params_frz into subroutine advance_clubb_core via a use statement. Doing so avoids a seg fault with l_use_ice_latent = .true. Results are BFB for arm_97. For #871. 2019-12-13 12:53:01 -0600cd4f009eb87b05355ab501f2a1e7c7666bcfea7aI fed pdf_params_frz into subroutine advance_clubb_coreeditadvance_clubb_core_module.F90advance_clubb_core_module.F90parameters_tunable.F90clubb_api_module.F90b7b343873c52f374140f1b829c58798d231047131576288560000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding error code to arguement list of non-api routines where it was included in the api version. 2019-12-13 19:56:00 -0600b7b343873c52f374140f1b829c58798d23104713Adding error code to arguement list of non-api routines where it was included in the api version.editclubb_api_module.F90editadvance_clubb_core_module.F90editparameters_tunable.F90advance_clubb_core_module.F90mixing_length.F90clubb_api_module.F903108bbdf54aa0f815048daf566c0015714ec82c11576621906000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal. 2019-12-17 16:31:46 -06003108bbdf54aa0f815048daf566c0015714ec82c1Moving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal.editclubb_api_module.F90editadvance_clubb_core_module.F90editmixing_length.F90clubb_api_module.F900cfd69bf18f68389e4d86b7fac53b3e828e98f8c1576699854000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduAdded use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public. This was done to be able to use the variable in SAM's SGS_CLUBB package. https://github.com/larson-group/clubb/issues/871 2019-12-18 14:10:54 -06000cfd69bf18f68389e4d86b7fac53b3e828e98f8cAdded use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public.editclubb_api_module.F90advance_clubb_core_module.F908105cfd6a2a86d2adf95bfe73e9ee210219dd5801576855679000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have fixed the warnings for lines exceeding 100 characters. 2019-12-20 09:27:59 -06008105cfd6a2a86d2adf95bfe73e9ee210219dd580I have fixed the warnings for lines exceeding 100 characters.editadvance_clubb_core_module.F90latin_hypercube_driver_module.F905438863c9d6f29eb871accb42e71d9ebfede658e1576855679000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have fixed the warnings for lines exceeding 100 characters. 2019-12-20 09:27:59 -06005438863c9d6f29eb871accb42e71d9ebfede658eI have fixed the warnings for lines exceeding 100 characters.editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90clubb_api_module.F90234b88f48750523927211d4908d6ed086592941b1576880962000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPassing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity. 2019-12-20 16:29:22 -0600234b88f48750523927211d4908d6ed086592941bPassing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity.editclubb_api_module.F90editadvance_clubb_core_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b960a3357fc8a406b267d5888b37d88936cbd6a71578358753000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding GPU code to portion of SILHS, and refactoring minor aspects of code structure. larson-group/clubb#869 2020-01-06 18:59:13 -0600b960a3357fc8a406b267d5888b37d88936cbd6a7Adding GPU code to portion of SILHS, and refactoring minor aspects of code structure. larson-group/clubb#869editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90transform_to_pdf_module.F90141063f7ad13936df7d7e0f44b07364a9d1258421578422779000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving problems. This should fix the compiler error. 2020-01-07 12:46:19 -0600141063f7ad13936df7d7e0f44b07364a9d125842Removing problems. This should fix the compiler error.edittransform_to_pdf_module.F90latin_hypercube_driver_module.F909313e43d5207ab5755b804d65c752e33031e73c01578518004000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking subroutine to generate random samples and weights on CPU's, this will be accompanied by one for GPU's shortly. This is bit-for-bit. larson-group/clubb#869 2020-01-08 15:13:24 -06009313e43d5207ab5755b804d65c752e33031e73c0Making subroutine to generate random samples and weights on CPU's, this will be accompanied by one for GPU's shortly. This is bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F90999d5ebd447f3ab6dce4b9f64df67fa5f16c47101578526676000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSimplifiying call trees a bit, removing unused procedures, and creating a random pool to be used where random numbers were being used. This pool allows all randoms to be generated at the same time, which is better for CPUs and (as far as I know) the only decent way to do this on GPUs. Becuase of the different random numbers, this is BIT_CHANGING. larson-group/clubb#869 2020-01-08 17:37:56 -0600999d5ebd447f3ab6dce4b9f64df67fa5f16c4710Simplifiying call trees a bit, removing unused procedures, and creating a random pool to be used where random numbers were being used. This pool allows all randoms to be generated at the same time, which is better for CPUs and (as far as I know) the only decent way to do this on GPUs. Becuase of the different random numbers, this is BIT_CHANGING. larson-group/clubb#869editlatin_hypercube_driver_module.F90parameters_tunable.F9011b379246a683faec006978acd3764328492619f1578600058000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTrivial update to test if cams autoupdate works 2020-01-09 14:00:58 -060011b379246a683faec006978acd3764328492619fTrivial update to test if cams autoupdate workseditparameters_tunable.F90latin_hypercube_driver_module.F904c49ee462468573ba7c6af413279c90755ade6bf1578613276000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging clipping of uniform samples. This is the same fix from commit afe34fb444a47aa4cb8bcc8b9cbcaeceb0539c9f, but was accidentally reverted in commit 766a5934a8352a556ed5ba2cfeac6aa547f76f86. larson-group/clubb#869 2020-01-09 17:41:16 -06004c49ee462468573ba7c6af413279c90755ade6bfChanging clipping of uniform samples. This is the same fix from commit afe34fb444a47aa4cb8bcc8b9cbcaeceb0539c9f, but was accidentally reverted in commit 766a5934a8352a556ed5ba2cfeac6aa547f76f86. larson-group/clubb#869editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F9096f8a363aa3502818df4ad4f99ac5529107524df1578613634000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCommiting a space, because the last commit, be3699d840ed6bc3ff52dc5d397a74767ecdc414, is BIT_CHANGING. 2020-01-09 17:47:14 -060096f8a363aa3502818df4ad4f99ac5529107524dfCommiting a space, because the last commit, be3699d840ed6bc3ff52dc5d397a74767ecdc414, is BIT_CHANGING.editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F90c92ee6dd5c955e568051a77c9fd3c458310820ea1578693432000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSimplifying call tree some more, moving around where calculations are done so that GPU code doesn't have to be interrupted with data copies or CPU code. This is bit-for-bit. larson-group/clubb#869 2020-01-10 15:57:12 -0600c92ee6dd5c955e568051a77c9fd3c458310820eaSimplifying call tree some more, moving around where calculations are done so that GPU code doesn't have to be interrupted with data copies or CPU code. This is bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90bad04be5432713d928eec4ee525b0e56657ef7c61578711350000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduLots of GPUizing and reorganizing calls. This is bit-for-bit. larson-group/clubb#869 2020-01-10 20:55:50 -0600bad04be5432713d928eec4ee525b0e56657ef7c6Lots of GPUizing and reorganizing calls. This is bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90parameters_tunable.F90model_flags.F906b20ec2a88f083ee48eac3e39d0e7f94852afcc71578723242000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch" I am reverting commit da00f00. In that commit, I set some tunable parameters and flags to be consistent with an old version of E3SM-CLUBB-SILHS. However, results from those old cases are hopelessly lost anyway, and we should keep flags and parameters consistent with today's CLUBB. Secondly, the code change in da00f00 is blocking a merge of the modern CLUBB master into this branch. This reverts commit da00f00f1bd353a7e413a738e1424ddddd751a2b. 2020-01-11 00:14:02 -06006b20ec2a88f083ee48eac3e39d0e7f94852afcc7Revert "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch"editparameters_tunable.F90editmodel_flags.F90latin_hypercube_driver_module.F901b7c49923e21cc97143c420b994400c22efd1af21578951944000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving sample point clipping to after the sampling drivers, rather than immediately after generate_uniform_lh_sample. This was causing sample points to end up out of range when compiling in single precision, which is why the nightly tests were failing for PGI. This should be BIT_CHANGING. larson-group/clubb#869 2020-01-13 15:45:44 -06001b7c49923e21cc97143c420b994400c22efd1af2Moving sample point clipping to after the sampling drivers, rather than immediately after generate_uniform_lh_sample. This was causing sample points to end up out of range when compiling in single precision, which is why the nightly tests were failing for PGI. This should be BIT_CHANGING. larson-group/clubb#869editlatin_hypercube_driver_module.F90parameters_tunable.F901b3ce367c1fd861f61265a4b797c300cbf0a016a1579036682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed E3SM preprocessor commands around E3SM-specific code in parameters_tunable.F90. 2020-01-14 15:18:02 -06001b3ce367c1fd861f61265a4b797c300cbf0a016aI placed E3SM preprocessor commands around E3SM-specific code ineditparameters_tunable.F90latin_hypercube_driver_module.F90167b63c98f5944d7d45de97507e8d910b376992c1579122114000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRestoring assertion check for the vertical correlation calculation. larson-group/clubb#869 2020-01-15 15:01:54 -0600167b63c98f5944d7d45de97507e8d910b376992cRestoring assertion check for the vertical correlation calculation. larson-group/clubb#869editlatin_hypercube_driver_module.F90parameters_silhs.F90latin_hypercube_driver_module.F90c927e76c34601e24c555ad799e32bb83e560a0a21579138765000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869 2020-01-15 19:39:25 -0600c927e76c34601e24c555ad799e32bb83e560a0a2Changing the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869editparameters_silhs.F90editlatin_hypercube_driver_module.F90parameters_tunable.F90e6f8822a24416b4d853465f7bd797ea5a8fb92dd1579207489000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added E3SM's clubb_ parameters that can be read in from the E3SM clubb_param_nl namelist that are now found on E3SM's master branch (and weren't previously). This is within the #ifdef E3SM preprocessor directive and won't affect CLUBB except in the context of E3SM. 2020-01-16 14:44:49 -0600e6f8822a24416b4d853465f7bd797ea5a8fb92ddI added E3SM's clubb_ parameters that can be read in from theeditparameters_tunable.F90parameters_tunable.F9001cd689e03930500afd5a99d8b980dbf78b4bc2b1579215203000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the remainder the clubb_ terms that were added previously to the zhun/atm/clubb_silhs_v2 branch of the UWM E3SM repository. This only affects code in the #ifdef E3SM preprocessor flag. 2020-01-16 16:53:23 -060001cd689e03930500afd5a99d8b980dbf78b4bc2bI added the remainder the clubb_ terms that were added previously toeditparameters_tunable.F90latin_hypercube_driver_module.F9027ac5d4ef6f344b80445522f9e313392896a24951579642680000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869 2020-01-21 15:38:00 -060027ac5d4ef6f344b80445522f9e313392896a2495Changing error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869editlatin_hypercube_driver_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b6025d4bae73e4715cd9ba9d404464f8daae4c4e1579714696000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869 2020-01-22 11:38:16 -0600b6025d4bae73e4715cd9ba9d404464f8daae4c4eSmall updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F905f9e2a7a767c2b2ee554bfccc0c9908d50f4043d1579716158000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRedoing some data directives to only copy data that we need off the device. Data that is needed by assertion checks and stats will be updated conditionally. This will make the code faster when no stats/assertion checks are being done, but slower when it is. This is all bit-for-bit. larson-group/clubb#869 2020-01-22 12:02:38 -06005f9e2a7a767c2b2ee554bfccc0c9908d50f4043dRedoing some data directives to only copy data that we need off the device. Data that is needed by assertion checks and stats will be updated conditionally. This will make the code faster when no stats/assertion checks are being done, but slower when it is. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90transform_to_pdf_module.F901f9d2abc6ca0b7b180c4d0f6f18197c40ef594e11579897098000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869 2020-01-24 14:18:18 -06001f9d2abc6ca0b7b180c4d0f6f18197c40ef594e1Adding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869edittransform_to_pdf_module.F90transform_to_pdf_module.F90c58014f82bae800df319de3edfed14f6d221964f1579899486000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSimple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869 2020-01-24 14:58:06 -0600c58014f82bae800df319de3edfed14f6d221964fSimple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869edittransform_to_pdf_module.F90latin_hypercube_driver_module.F908e5716b6671ee0b87017b2816ab718e90d1bb0281580239752000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. This is all bit-for-bit. larson-group/clubb#869 2020-01-28 13:29:12 -06008e5716b6671ee0b87017b2816ab718e90d1bb028Small performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90faf11c1f824a5fc95ecb21de0a2225ba20036ea61580253302000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving lh_clipped_vars and replacing functionality with arrays. larson-group/clubb#869 2020-01-28 17:15:02 -0600faf11c1f824a5fc95ecb21de0a2225ba20036ea6Removing lh_clipped_vars and replacing functionality with arrays. larson-group/clubb#869editsilhs_api_module.F90editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F905b5269b0631c07c51addb22c912d77223d3cd0091580414158000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate latin_hypercube_driver_module.F90 2020-01-30 13:55:58 -06005b5269b0631c07c51addb22c912d77223d3cd009Update latin_hypercube_driver_module.F90editlatin_hypercube_driver_module.F90parameters_tunable.F90dfe257f9bd88ba731787533dc5bc35ffb1b87c351580414204000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameters_tunable.F90 2020-01-30 13:56:44 -0600dfe257f9bd88ba731787533dc5bc35ffb1b87c35Update parameters_tunable.F90editparameters_tunable.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b6b18c6a112162a8ef8fbf13aa3478a4b7062d7d1581022293000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduGPUizing clip_transform_silhs_output and pushing data directives up call tree. This is all bit-for-bit. larson-group/clubb#869 2020-02-06 14:51:33 -0600b6b18c6a112162a8ef8fbf13aa3478a4b7062d7dGPUizing clip_transform_silhs_output and pushing data directives up call tree. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b7c52042cb960e2a85c4402ec4e1da7791ab56a31581030860000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869 2020-02-06 17:14:20 -0600b7c52042cb960e2a85c4402ec4e1da7791ab56a3Making some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90stats_type_utilities.F90bde68d858a6c622fc6acdd4c2255c6125c632a381581722411000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874 2020-02-14 17:20:11 -0600bde68d858a6c622fc6acdd4c2255c6125c632a38I changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874editstats_type_utilities.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90f4cbd72beba82c17113c6a38d43a72e88bfe2fc51581778729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the new l_update_pressure configurable flag to clubb_config_flags. When this flag is enabled (which it is by default), CLUBB updates pressure and exner every timestep. This new flags allows this feature to easily be turned off within the context of host models, such as CAM and E3SM. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2020-02-15 08:58:49 -0600f4cbd72beba82c17113c6a38d43a72e88bfe2fc5I added the new l_update_pressure configurable flag to clubb_config_flags.editmodel_flags.F90editadvance_clubb_core_module.F90editclubb_api_module.F90new_hybrid_pdf_main.F90a32a63a586047be39f39af42106bfb5f31efb6721582228068000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some code I used in the special input fields branch to make the PDF of w symmetric, so that the PDF at a value of positive skewness of w (for example, +2) looks like a mirror image of the PDF at the opposite value of negative skewness (for example, -2). 2020-02-20 13:47:48 -0600a32a63a586047be39f39af42106bfb5f31efb672I added some code I used in the special input fields branch to makeeditnew_hybrid_pdf_main.F90numerical_check.F909225a01acef12413480c3deb0cc2dfd804127c271584200643000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduAn improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875] 2020-03-14 10:44:03 -05009225a01acef12413480c3deb0cc2dfd804127c27An improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875]editnumerical_check.F90stats_type_utilities.F900dca127542d480d4f81bb75019c575e2b3addf851584204136000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874. 2020-03-14 11:42:16 -05000dca127542d480d4f81bb75019c575e2b3addf85I revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874.editstats_type_utilities.F90variables_prognostic_module.F9064b5afb6666c2d345052d96f8f1d8ae54761daf81584638975000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of the "allocatable", "allocate", and "deallocate" statements in regards to pdf_params and pdf_params_frz because NCAR could not get CAM to run using the NAG compiler. As it turns out, the code can run on group computers without these statements. 2020-03-19 12:29:35 -050064b5afb6666c2d345052d96f8f1d8ae54761daf8I got rid of the "allocatable", "allocate", and "deallocate" statementseditvariables_prognostic_module.F90error_code.F90279fab75ad386341b7d26f56991681e86ee9eef31584682838000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed an ifndef CLUBB_CAM preprocessor flag around the code in error_code.F90 that uses the FORTRAN intrinsic call to getpid(). This causes problems for NCAR when they try to compile CAM using the NAG compiler. 2020-03-20 00:40:38 -0500279fab75ad386341b7d26f56991681e86ee9eef3I placed an ifndef CLUBB_CAM preprocessor flag around the code inediterror_code.F90parameters_tunable.F9025b836771d9185938dffb4327d6444a6e3bcb0051585575594000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI reduced the minimum possible value of lmin from 4.0 to 1.0. This is because Mark Taylor found that for the E3SM model, reducing lmin from 4 to 1 prevents excessive cooling at the surface near Greenland. For more information about this "Tlay" error, see [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1296793934/CLUBB+lmin+coeff+sensitivity?focusedCommentId=1296892065#comment-1296892065) and [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1235255422/Tlay+Error+in+ne256pg2+Runs+cold+temperature+plots). larson-group/climate_process_team#196 2020-03-30 08:39:54 -050025b836771d9185938dffb4327d6444a6e3bcb005I reduced the minimum possible value of lmin from 4.0 to 1.0.editparameters_tunable.F90advance_clubb_core_module.F905a748b32a36b1c101fd9ba323db0a204a96f16ac1585586425000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI made a print/write statement debug level 3 because it was filling up the logs of global CAM and E3SM simulations. For #755 and #800 2020-03-30 11:40:25 -05005a748b32a36b1c101fd9ba323db0a204a96f16acI made a print/write statement debug level 3editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90a050d6abf83b7403c321a47e310b9df7c350e8671585586685000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI made a second print/write statement debug level 3 because it was also filling up the logs of global CAM and E3SM simulations. For #755 and #800. 2020-03-30 11:44:45 -0500a050d6abf83b7403c321a47e310b9df7c350e867I made a second print/write statement debug level 3editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90f1873bdcf6480583a05d39372926472755e0c0551585587118000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduI fix a print/write statement debug level3. For #755 and #800 2020-03-30 11:51:58 -0500f1873bdcf6480583a05d39372926472755e0c055I fix a print/write statement debug level3. For #755 and #800editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90f58158365d6813e0b2ee60497eb0774176abf0641586811945000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am replacing the "use" statements that referenced variables_diagnostic_module from advance_clubb_core and replacing them with local declarations. This requires that some additional variables are passed into and out of advance_clubb_core. Additionally, Lscale is now recalculated outside of advance_clubb_core using TKE and Kh for use in SILHS code. This makes this commit BIT_CHANGING. CLUBB GitHub Issue Reference: #876. 2020-04-13 16:05:45 -0500f58158365d6813e0b2ee60497eb0774176abf064I am replacing the "use" statements that referencededitadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F900f67628552092a7d229225bac08badff3b074d621586827490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI "brought back the stats" by passing the stats from advance_clubb_core to stats_accumulate, getting rid of the "use" statements. This commit is BIT_CHANGING, since it changes stats output. 2020-04-13 20:24:50 -05000f67628552092a7d229225bac08badff3b074d62I "brought back the stats" by passing the stats from advance_clubb_coreeditadvance_clubb_core_module.F90editstats_clubb_utilities.F90advance_clubb_core_module.F90dd9ad18fdb32917c840b9406d2ae629f51ff91b91586888964000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref) from subroutine pdf_closure_driver in advance_clubb_core. 2020-04-14 13:29:24 -0500dd9ad18fdb32917c840b9406d2ae629f51ff91b9Removing the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref)editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F907a05c93c702035d8a08b1121d7e927af63e186f31586895654000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduResults were changed yesterday for some cases because thlprcp was no longer being output from advance_clubb_core for use in the calculate_thlp2_rad. This was previously accomplished through a "use" statement. The variable thlprcp is now output through the argument list of advance_clubb_core. This commit is BIT_CHANGING. 2020-04-14 15:20:54 -05007a05c93c702035d8a08b1121d7e927af63e186f3Results were changed yesterday for some cases because thlprcp waseditclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F906f41957ecc761aa393647629c997eb41fdb01b581586993873000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have resolved all the issues surrounding recent CLUBB commits that remove "use" statements from the code. The commit 068a7b2 (April 8, 2020) was the commit before these refactorings started. When Lscale, Skw_zm, and thvm are passed out of CLUBB core, the code returns to a bit-for-bit match to commit 068a7b2. However, rather than pass these variables out of advance_clubb_core, it is more convenient to recalculate them locally in clubb_driver. This changes results for (a) SILHS cases, owing to the change to Lscale, and (b) all cases that advance microphysics, owing to the change to Skw_zm. The net result is that this commit is BIT_CHANGING. For cases that advance microphysics and/or use SILHS, the net result is BIT_CHANGING when compared to 068a7b2. For all other cases (BOMEX, etc.), the results are an exact match. It is important to note that host models that use CLUBB (without SILHS) will not be affected by these changes. Host models that use SILHS will only be affected by the change to Lscale. However, this code has already been applied to CAM and E3SM, so the only changes will to SILHS code in SAM and WRF. Larson Group Issue Reference: #876. 2020-04-15 18:37:53 -05006f41957ecc761aa393647629c997eb41fdb01b58I have resolved all the issues surrounding recent CLUBB commits thateditadvance_clubb_core_module.F90output_netcdf.F903603a68adcce4975fbb94a240e11deacf53efe081587852453000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI removed code that stops a run if the output time step is less than a minute. This restriction is unnecessary if netcdf is used as the output file format. 2020-04-25 17:07:33 -05003603a68adcce4975fbb94a240e11deacf53efe08I removed code that stops a run if the output time step is less than a minute.editoutput_netcdf.F90numerical_check.F905249de8f91cd1474ce792ec4c8cd7536491a3c271588201621000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed references to variables_prognostic_module and variables_diagnostic_module from numerical_check.F90. CLUBB GitHub Issue Reference: #876. 2020-04-29 18:07:01 -05005249de8f91cd1474ce792ec4c8cd7536491a3c27I removed references to variables_prognostic_module andeditnumerical_check.F90advance_clubb_core_module.F903b091ac242ff2f9062505f5bff01ead16d7612e01588279420000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a boo-boo. CLUBB GitHub Issue Reference: #876. 2020-04-30 15:43:40 -05003b091ac242ff2f9062505f5bff01ead16d7612e0Fixed a boo-boo.editadvance_clubb_core_module.F90model_flags.F9036fe4d36102c43fa039370832fe42a56ded17dbc1588284059000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI set `l_diag_Lscale_from_tau = .true.` in source code in order to match the value in configurable_model_flags.in. I did so to avoid confusion, but also to check whether doing so will allow the WRF-CLUBB lines nightly plots to better match the CLUBB standalone lines. For larson-group/wrf#105. 2020-04-30 17:00:59 -050036fe4d36102c43fa039370832fe42a56ded17dbcI set `l_diag_Lscale_from_tau = .true.` in source codeeditmodel_flags.F90stats_clubb_utilities.F9029ad608ebd198f28b74757885b31ac09cf6d49891588625963000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed references to variable_diagnostic_module for various Kessler Autoconversion variables that are being output to statistics. CLUBB Git Issue Reference: #876. 2020-05-04 15:59:23 -050029ad608ebd198f28b74757885b31ac09cf6d4989I removed references to variable_diagnostic_module for various Kesslereditstats_clubb_utilities.F90setup_clubb_pdf_params.F90clubb_api_module.F9006e6739507c93d6cc3c2aadb4d262a024b0f3eab1588632211000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the reference to use variables_diagnostic_module for Kh_zm found in setup_clubb_pdf_params.F90. The variable Kh_zm can easily be passed in instead. CLUBB Git Issue Reference: #876. 2020-05-04 17:43:31 -050006e6739507c93d6cc3c2aadb4d262a024b0f3eabI removed the reference to use variables_diagnostic_module for Kh_zmeditclubb_api_module.F90editsetup_clubb_pdf_params.F90diagnose_correlations_module.F906f2f593c5bd5306818c121ecfb043d9fc6687c9a1588635738000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoved a reference to variables_diagnostic_module for Kh_zm in approx_w_corr. I passed the variable in instead. CLUBB Github Issue Reference: #876. 2020-05-04 18:42:18 -05006f2f593c5bd5306818c121ecfb043d9fc6687c9aRemoved a reference to variables_diagnostic_module for Kh_zm ineditdiagnose_correlations_module.F90clubb_api_module.F90efec25c6dc6ff1e4d8a4162088208012a97e00391588637567000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am able to remove references to variables_prognostic_module and variables_diagnostic_module from clubb_api_module. CLUBB GitHub Issue References: #876. 2020-05-04 19:12:47 -0500efec25c6dc6ff1e4d8a4162088208012a97e0039I am able to remove references to variables_prognostic_module andeditclubb_api_module.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90variables_diagnostic_module.F90clubb_api_module.F90variables_prognostic_module.F90752666bf1bdfa947fe94b37b82aa090098df8cc31588697383000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the l_use_ice_latent flag from the code, and along with it all the _frz variables. The results in GrADS output files from this revision are an exact match to the results in GraDS output files from the previous revision for all cases. CLUBB GitHub Issue Reference: #876. 2020-05-05 11:49:43 -0500752666bf1bdfa947fe94b37b82aa090098df8cc3I removed the l_use_ice_latent flag from the code, and along with iteditmodel_flags.F90editadvance_clubb_core_module.F90editvariables_diagnostic_module.F90editvariables_prognostic_module.F90editclubb_api_module.F90editmixing_length.F90advance_clubb_core_module.F90variables_diagnostic_module.F90clubb_api_module.F90variables_prognostic_module.F90e81b40abf9a543b2a1bc51d8e266903d13a9fc2f1588984893000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the project of removing variables_prognostic_module and variables_diagnostic_module from the CLUBB code. The results in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. CLUBB Git Issue Reference: #876. 2020-05-08 19:41:33 -0500e81b40abf9a543b2a1bc51d8e266903d13a9fc2fI have completed the project of removing variables_prognostic_moduledeletevariables_diagnostic_module.F90deletevariables_prognostic_module.F90editadvance_clubb_core_module.F90editclubb_api_module.F90parameters_tunable.F901bdd34c6481b3c01f82b877f62a93ba370e5b9ed1589154053000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI added some missing threadprivate statements in order to eliminate a warning from the check_for_missing_threadprivate.py script. 2020-05-10 18:40:53 -05001bdd34c6481b3c01f82b877f62a93ba370e5b9edI added some missing threadprivate statementseditparameters_tunable.F90advance_wp2_wp3_module.F90e2826f017c87d3cd240aa7fc22795fe1a4ac161c1589849026000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have taken the code from wp2_term_ta_all and placed it in the subroutine wp2_term_ta. This combines the former, verbose description with the new optimized code. This also eliminates an unused function and gets rid of a compiler warning. 2020-05-18 19:43:46 -0500e2826f017c87d3cd240aa7fc22795fe1a4ac161cI have taken the code from wp2_term_ta_all and placed it in the subroutineeditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90e0d302767e3733455f3dde87b01472c1eb9ee1a61589929080000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating wp3_term_ta_new_pdf_lhs to use the optimized code from wp3_term_ta_new_pdf_lhs_all, and then I am removing wp3_term_ta_new_pdf_lhs_all from the code. This eliminates a compiler error. 2020-05-19 17:58:00 -0500e0d302767e3733455f3dde87b01472c1eb9ee1a6I am updating wp3_term_ta_new_pdf_lhs to use the optimized code fromeditadvance_wp2_wp3_module.F90parameters_tunable.F90df5510e777de2b9360c836491d81db6920bf07be1590592049000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.in 2020-05-27 10:07:29 -0500df5510e777de2b9360c836491d81db6920bf07beThis commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.ineditparameters_tunable.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90249ed5dd4ff58c54c3bcd841658e556f7ee999b31591212970000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the change of using tau_wp2_zm to damp up2 and vp2, rather than tau_xp2_zm, when l_diag_Lscale_from_tau is enabled. The previous code was causing up2 and vp2 to become large and unstable. Additionally, I placed a limiter on tau based on Lscale_max in the CLUBB code for the situation where l_diag_Lscale_from_tau is enabled. This will help constrict tau, and thereby the magnitudes of turbulent fields, in a host model as grid spacing starts to become arbitrarily small and resolved features take over. This revision is BIT_CHANGING. 2020-06-03 14:36:10 -0500249ed5dd4ff58c54c3bcd841658e556f7ee999b3I am making the change of using tau_wp2_zm to damp up2 and vp2,editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F90pdf_closure_module.F90setup_clubb_pdf_params.F90a59618b0d5bb86a20829495f774d7b95b59fa7c01591892411000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the integer flags iiPDF_type and ipdf_call_placement to the clubb_config_flags type. They have also been added to configurable_model_flags.in. The results in GrADS output files from this revision are an exact match to the result in GrADS output files from the previous revision for all cases. 2020-06-11 11:20:11 -0500a59618b0d5bb86a20829495f774d7b95b59fa7c0I have added the integer flags iiPDF_type and ipdf_call_placementeditadvance_clubb_core_module.F90editpdf_closure_module.F90editsetup_clubb_pdf_params.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmodel_flags.F90clubb_api_module.F90935b507b50e147ce7e4cb1aefde6b167312b5aa01591904998000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am going to make primary PDF type options and primary PDF call position options available to host models. 2020-06-11 14:49:58 -0500935b507b50e147ce7e4cb1aefde6b167312b5aa0I am going to make primary PDF type options and primary PDF calleditclubb_api_module.F90mixing_length.F90advance_xp2_xpyp_module.F90stats_clubb_utilities.F90lapack_wrap.F9003a057fc0fa742bf5903cebd6c39a6cabe084a541592253292000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added E3SM customizations to CLUBB's master branch. This is meant for updating CLUBB in the E3SM master branch. 2020-06-15 15:34:52 -050003a057fc0fa742bf5903cebd6c39a6cabe084a54I added E3SM customizations to CLUBB's master branch. This is meanteditadvance_xp2_xpyp_module.F90editlapack_wrap.F90editmixing_length.F90editstats_clubb_utilities.F90parameters_tunable.F901d961006eb841164ff42b461bf2cc5465c0fe4de1592499699000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the clubb_ list of namelist parameters used in E3SM to include every parameter that E3SM has customized in CLUBB. The goal is to make it so E3SM does not need to customize the CLUBB side of E3SM-CLUBB at all, making future upgrades easier. 2020-06-18 12:01:39 -05001d961006eb841164ff42b461bf2cc5465c0fe4deI am updating the clubb_ list of namelist parameters used in E3SMeditparameters_tunable.F90parameters_tunable.F903a2dcd52a4c69c428255318e8e22ee90adb7a4911592499991000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTypo 2020-06-18 12:06:31 -05003a2dcd52a4c69c428255318e8e22ee90adb7a491Typoeditparameters_tunable.F90parameters_tunable.F90ca809e21e6bf2df918484017d9126c244003e1ef1592500303000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed more typos 2020-06-18 12:11:43 -0500ca809e21e6bf2df918484017d9126c244003e1efFixed more typoseditparameters_tunable.F90new_hybrid_pdf_main.F9029c5dd3a6fd55e6a294aed63e5e6029810e970fa1592517157000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the new hybrid PDF's calculation of F_w to use tunable parameter gamma (technically, the gamma_Skw_fnc). In the ADG1 PDF, when gamma_Skw_fnc goes to 0, the standard deviations of w in each PDF component both go to 0, and the spread between the PDF component means of w is at its maximum. When gamma_Skw_fnc goes to 1, the standard deviations of w in each PDF component become large, and the spread between the PDF component means of w becomes small. The new hybrid PDF is based on the same concept, except that I had been using a hard-wired 0.75 in the place of gamma or the gamma_Skw_fnc. Re-using the tunable parameters for gamma here makes sense, since it's the same concept and this makes tuning easier. 2020-06-18 16:52:37 -050029c5dd3a6fd55e6a294aed63e5e6029810e970faI am changing the new hybrid PDF's calculation of F_w to useeditnew_hybrid_pdf_main.F90advance_clubb_core_module.F90bfde3dd3cab8d57d726caebb7544a3f171dd24bc1592857658000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the xp3 calculation for PDF types other than ADG1. ADG1 is stuck into using the LG 2005 ansatz, exactly as written. Other PDF types are not stuck using this. Rather than re-invent the wheel, these other PDF types can still use the LG 2005 ansatz equation, but sigma_sqd_w_zt (specific to ADG1) has been replaced with a tunable function relavant to other PDF types. This tunable function is called xp3_coef_fnc. The results in GrADS output files from the previous revision are an exact match to the results in GrADS output files from the current revision for all cases for the default ADG1 PDF. 2020-06-22 15:27:38 -0500bfde3dd3cab8d57d726caebb7544a3f171dd24bcI updated the xp3 calculation for PDF types other than ADG1.editadvance_clubb_core_module.F90advance_clubb_core_module.F90b9a3fc1cb5be1eedbf0543b5a29bf413d833246b1592922724000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis xp3_coef_ parameters produce new hybrid PDF results similar to the old ones for a starting point. 2020-06-23 09:32:04 -0500b9a3fc1cb5be1eedbf0543b5a29bf413d833246bThis xp3_coef_ parameters produce new hybrid PDF results similar to the oldeditadvance_clubb_core_module.F90parameters_tunable.F90advance_clubb_core_module.F90parameter_indices.F9017b61c278e074b0f13c0b7a3c7249b68c911d0961592937236000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the 2 new parameters in the simple xp3 equation (for PDF types other than ADG1) to the list of CLUBB tunable parameters. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2020-06-23 13:33:56 -050017b61c278e074b0f13c0b7a3c7249b68c911d096I added the 2 new parameters in the simple xp3 equation (for PDFeditparameters_tunable.F90editadvance_clubb_core_module.F90editparameter_indices.F90advance_wp2_wp3_module.F90ec26fc272f08735e68e710da38363b7efd0dd57c1594325433000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_all routines into one subroutine. This is done to remove a compiler warning, simplify the code, and prep the code for the wp3 partial upwinding. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group GitHub Issue Reference: #877. 2020-07-09 15:10:33 -0500ec26fc272f08735e68e710da38363b7efd0dd57cI have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_alleditadvance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90306b627bcb23d1b499a98adeaed955ca6abb177f1594340218000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the partially upwinded implementation of the wp3 turbulent advection term for ADG1 to the code. It is turned off by default. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group GitHub Issue Reference: #877. 2020-07-09 19:16:58 -0500306b627bcb23d1b499a98adeaed955ca6abb177fI added the partially upwinded implementation of the wp3 turbulent advectioneditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90output_netcdf.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90calc_roots.F90surface_varnce_module.F90mono_flux_limiter.F908d6af15804e294c451e5055c922a26971c8d95301594355055000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused module imports 2020-07-09 23:24:15 -05008d6af15804e294c451e5055c922a26971c8d9530Removed unused module importseditadg1_adg2_3d_luhar_pdf.F90editsurface_varnce_module.F90editpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editoutput_netcdf.F90editSkx_module.F90editadvance_wp2_wp3_module.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editcalc_roots.F90editmixing_length.F90editadvance_clubb_core_module.F90est_kessler_microphys_module.F90latin_hypercube_driver_module.F9095246a59cf7daf42bea1f966cd0bfe71eaae04f01594355055000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused module imports 2020-07-09 23:24:15 -050095246a59cf7daf42bea1f966cd0bfe71eaae04f0Removed unused module importseditlatin_hypercube_driver_module.F90editest_kessler_microphys_module.F90output_netcdf.F905aff71092d08c4cbcbbdc88c9c4823996750edfc1594358588000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved a comma that I missed while removing unused imports (#878) 2020-07-10 00:23:08 -05005aff71092d08c4cbcbbdc88c9c4823996750edfcRemoved a comma that I missed while removing unused imports (#878)editoutput_netcdf.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F9057147620713193e3f760ea88538641e52349ab841594405853000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding l_partial_upwind_wp3 to the list of clubb_config_flags. Larson Group GitHub Issue Reference: #877. 2020-07-10 13:30:53 -050057147620713193e3f760ea88538641e52349ab84I am adding l_partial_upwind_wp3 to the list of clubb_config_flags.editclubb_api_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90parameters_silhs.F90latin_hypercube_driver_module.F906e6f394fa3e64d52dd788789db41f5cd35349ade1594769616000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduDeprecating use of l_Lscale_vert_avg in SILHS. This is causing problems with the GPUization efforts, described in larson-group/cam#129 2020-07-14 18:33:36 -05006e6f394fa3e64d52dd788789db41f5cd35349adeDeprecating use of l_Lscale_vert_avg in SILHS. This is causing problems with the GPUization efforts, described in larson-group/cam#129editlatin_hypercube_driver_module.F90editparameters_silhs.F90advance_wp2_wp3_module.F900564f82db8dd12fafc465a90d1a283989482f3921594844985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI started the process of paring 2 subprograms back down to 1 in advance_wp2_wp3_module. Everything remains an exact match. CLUBB Issue ref: #878. 2020-07-15 15:29:45 -05000564f82db8dd12fafc465a90d1a283989482f392I started the process of paring 2 subprograms back down to 1 ineditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F908b33c3ed3462f2c340836eb9276e7123eeef25941594850157000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI pared two more sets of equivalent subprograms down to 1 (each). Bittos are ditto Git Issue #878 2020-07-15 16:55:57 -05008b33c3ed3462f2c340836eb9276e7123eeef2594I pared two more sets of equivalent subprograms down to 1 (each).editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90034ddd2f57c2ba3d33368744e6268aec8fc4510a1594856144000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduParing down 2 equivalent subprograms to 1 again. Just call me "The Reducer" Bittos are ditto Issue #878 2020-07-15 18:35:44 -0500034ddd2f57c2ba3d33368744e6268aec8fc4510aParing down 2 equivalent subprograms to 1 again.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F909a48a69a9139f2d8b3ed6c0b9d729fe2439d7fa41594966970000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI condensed two more sets of doubled subprograms down to 1 (each) in advance_wp2_wp3_module.F90. Bittos are ditto. Big Issue #878. 2020-07-17 01:22:50 -05009a48a69a9139f2d8b3ed6c0b9d729fe2439d7fa4I condensed two more sets of doubled subprograms down to 1 (each)editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90f6211090a551eae9f5de3c2b60944efcc10e14581595010013000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduReduced two more sets of "doubled" subprograms down. Bit-for-bit 2020-07-17 13:20:13 -0500f6211090a551eae9f5de3c2b60944efcc10e1458Reduced two more sets of "doubled" subprograms down.editadvance_wp2_wp3_module.F90latin_hypercube_driver_module.F90c1b8935e7a81f9c4c6706b949e764cb1b46ea7261595023743000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating silhs to prepare the column loop commit. This is being committed seperately because it is BIT_CHANGING, due to the way we are initializing the random number generator on CPUs. larson-group/cam#129 2020-07-17 17:09:03 -0500c1b8935e7a81f9c4c6706b949e764cb1b46ea726Updating silhs to prepare the column loop commit. This is being committed seperately because it is BIT_CHANGING, due to the way we are initializing the random number generator on CPUs. larson-group/cam#129editlatin_hypercube_driver_module.F90silhs_api_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90456aaaad293ba2c1218c740543884c90dc9154511595026759000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding column loop index to silhs, and pushing loops down to allow parallelization over the column index. This requries changing the api, but it is bit-for-bit running on both gpus and cpus. larson-group/cam#129 2020-07-17 17:59:19 -0500456aaaad293ba2c1218c740543884c90dc915451Adding column loop index to silhs, and pushing loops down to allow parallelization over the column index. This requries changing the api, but it is bit-for-bit running on both gpus and cpus. larson-group/cam#129edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_clubb_core_module.F90097dc4653aefee568ab81cf9f5ce6d112cd172bc1595170691000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI updated CLUBB's copyright date range. 2020-07-19 09:58:11 -0500097dc4653aefee568ab81cf9f5ce6d112cd172bcI updated CLUBB's copyright date range.editadvance_clubb_core_module.F90silhs_api_module.F909301e56822e1b0f7d4d5ec1a7cfa21fb27ee48aa1595279402000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding interface in silhs_api to distinguish single vs multiple comulmn calls. This seems to be a better solution than the previous attempt that broke the nightly tests. When calling silhs a single column at a time, the api will copy the single column data into arrays with a grid column index, allowing us to leave the host models the same. larson-group/cam#129 2020-07-20 16:10:02 -05009301e56822e1b0f7d4d5ec1a7cfa21fb27ee48aaAdding interface in silhs_api to distinguish single vs multiple comulmn calls. This seems to be a better solution than the previous attempt that broke the nightly tests. When calling silhs a single column at a time, the api will copy the single column data into arrays with a grid column index, allowing us to leave the host models the same. larson-group/cam#129editsilhs_api_module.F90pdf_closure_module.F90bca9c6c8c0fb9a04fe5bd806cea2cd892bd9a95b1595347943000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused parameters [-Wunused-parameter] Output files are the same Issue #878 2020-07-21 11:12:23 -0500bca9c6c8c0fb9a04fe5bd806cea2cd892bd9a95bRemoved unused parameters [-Wunused-parameter]editpdf_closure_module.F90est_kessler_microphys_module.F90449ee02d46ebe4950dc9b8a3b4a0ee87b8b862721595347943000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused parameters [-Wunused-parameter] Output files are the same Issue #878 2020-07-21 11:12:23 -0500449ee02d46ebe4950dc9b8a3b4a0ee87b8b86272Removed unused parameters [-Wunused-parameter]editest_kessler_microphys_module.F90advance_wp2_wp3_module.F90632fe0cffdcec677fb17c73e49fb19b8b3652c501595441614000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTaking more duplicated subprograms and paring them down to 1. bit-4-bit; #878 2020-07-22 13:13:34 -0500632fe0cffdcec677fb17c73e49fb19b8b3652c50Taking more duplicated subprograms and paring them down to 1.editadvance_wp2_wp3_module.F90precipitation_fraction.F90advance_xp2_xpyp_module.F90parameters_tunable.F90advance_clubb_core_module.F90corr_varnce_module.F909d86e038a81f32899f20fe4c88883959891b8df01595452586000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comReplaced real checks with an epsilon approach [-Wcompare-reals] This commit should be BIT_CHANGING I accidentally put in a couple extra imports, will clean those out later Issue #878 2020-07-22 16:16:26 -05009d86e038a81f32899f20fe4c88883959891b8df0Replaced real checks with an epsilon approach [-Wcompare-reals]editcorr_varnce_module.F90editparameters_tunable.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editprecipitation_fraction.F90transform_to_pdf_module.F90silhs_importance_sample_module.F90fc375203e4d5f3ad2dd3ba40a8aedbdc2dd803521595452586000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comReplaced real checks with an epsilon approach [-Wcompare-reals] This commit should be BIT_CHANGING I accidentally put in a couple extra imports, will clean those out later Issue #878 2020-07-22 16:16:26 -0500fc375203e4d5f3ad2dd3ba40a8aedbdc2dd80352Replaced real checks with an epsilon approach [-Wcompare-reals]edittransform_to_pdf_module.F90editsilhs_importance_sample_module.F90corr_varnce_module.F904b370fe2ff24fd2d86598424c74361424ad9a94d1595456190000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused imports [-Wunused-parameter] Output is the same Issue #878 2020-07-22 17:16:30 -05004b370fe2ff24fd2d86598424c74361424ad9a94dRemoved unused imports [-Wunused-parameter]editcorr_varnce_module.F90transform_to_pdf_module.F90silhs_importance_sample_module.F906847aef50658a5a288954b592c9b6adf2cc491cd1595456190000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused imports [-Wunused-parameter] Output is the same Issue #878 2020-07-22 17:16:30 -05006847aef50658a5a288954b592c9b6adf2cc491cdRemoved unused imports [-Wunused-parameter]editsilhs_importance_sample_module.F90edittransform_to_pdf_module.F90precipitation_fraction.F9005f74998aa1912a02200c80b70fb9cac56d08e8a1595457956000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved styleguide violations from my code No change Issue #878 2020-07-22 17:45:56 -050005f74998aa1912a02200c80b70fb9cac56d08e8aRemoved styleguide violations from my codeeditprecipitation_fraction.F90parameters_tunable.F906cf01d6f24826da6eaaaec443d1c95ab8666bf8f1595520309000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comFixed a backwards epsilon comparison from 8e8e71e Results look identical Issue #878 2020-07-23 11:05:09 -05006cf01d6f24826da6eaaaec443d1c95ab8666bf8fFixed a backwards epsilon comparison from 8e8e71eeditparameters_tunable.F90advance_wp2_wp3_module.F90d9c9f9014093b3cfe7216f227621ff7bff260a2b1595525828000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoved the "doubling" of the remainder of the subprograms from advance_wp2_wp3_module.F90. Bit-for-bit; #878. 2020-07-23 12:37:08 -0500d9c9f9014093b3cfe7216f227621ff7bff260a2bRemoved the "doubling" of the remainder of the subprograms fromeditadvance_wp2_wp3_module.F90silhs_importance_sample_module.F9022eea6c0663459539b20863acdf61094a4ee94111595540475000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging epsilon used in equality comparison. The previous epsilon seems to be too large, and was causing failures in runs. larson-group/clubb#878 2020-07-23 16:41:15 -050022eea6c0663459539b20863acdf61094a4ee9411Changing epsilon used in equality comparison. The previous epsilon seems to be too large, and was causing failures in runs. larson-group/clubb#878editsilhs_importance_sample_module.F90latin_hypercube_driver_module.F909cf48dc3ffd702155f175a832543b1ccea5c2cc11595543971000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall changes to generate_all_uniform_samples. I was encountering a gpu problem with this code when run in cam. I'm not certain why this is an issue, but this changes fixes it and is bit-for-bit on both cpus and gpus. larson-group/cam#129 2020-07-23 17:39:31 -05009cf48dc3ffd702155f175a832543b1ccea5c2cc1Small changes to generate_all_uniform_samples. I was encountering a gpu problem with this code when run in cam. I'm not certain why this is an issue, but this changes fixes it and is bit-for-bit on both cpus and gpus. larson-group/cam#129editlatin_hypercube_driver_module.F90advance_xp2_xpyp_module.F90483e2dd3ae6245537b6c0b32ae8edb726e0ec49d1595608276000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comChanged the length of solve_type_str to 20 [-Wcharacter-trucation] Unchanged Issue #878 2020-07-24 11:31:16 -0500483e2dd3ae6245537b6c0b32ae8edb726e0ec49dChanged the length of solve_type_str to 20 [-Wcharacter-trucation]editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90pdf_closure_module.F90numerical_check.F90f10b9dd183a5aabfab4130401217a1f3a21901451595619599000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused arguments [-Wunused-dummy-argument] Unchanged The removed lines were commented out, opposed to deleted An if statement with continue was added to remove the warning without changing the method signature (clubb_driver.F90) Issue #878 2020-07-24 14:39:59 -0500f10b9dd183a5aabfab4130401217a1f3a2190145Removed unused arguments [-Wunused-dummy-argument]editpdf_closure_module.F90editadvance_clubb_core_module.F90editnumerical_check.F90silhs_api_module.F90latin_hypercube_driver_module.F907f8e2668c4728e4a1839307214d9ab340c7f80221595619599000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused arguments [-Wunused-dummy-argument] Unchanged The removed lines were commented out, opposed to deleted An if statement with continue was added to remove the warning without changing the method signature (clubb_driver.F90) Issue #878 2020-07-24 14:39:59 -05007f8e2668c4728e4a1839307214d9ab340c7f8022Removed unused arguments [-Wunused-dummy-argument]editlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_clubb_core_module.F9008c14a70ec4411e52e17b7c44d135a634640d8021595622374000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused variables [-Wunused-variable] Unchanged Issue #878 2020-07-24 15:26:14 -050008c14a70ec4411e52e17b7c44d135a634640d802Removed unused variables [-Wunused-variable]editadvance_clubb_core_module.F90latin_hypercube_driver_module.F900368ceb837a6b9adee914c68662dadfd7f25ee9f1595622374000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused variables [-Wunused-variable] Unchanged Issue #878 2020-07-24 15:26:14 -05000368ceb837a6b9adee914c68662dadfd7f25ee9fRemoved unused variables [-Wunused-variable]editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90fe8a2ccd15709427486d06dafd69dc519867e4a51595651752000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have tidied up advance_wp2_wp3_module.F90, and I have removed all doubled subprograms from advance_xm_wpxp_module.F90. The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. Git Issue: #878. 2020-07-24 23:35:52 -0500fe8a2ccd15709427486d06dafd69dc519867e4a5I have tidied up advance_wp2_wp3_module.F90, and I have removed all doublededitadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90d8bc4555b03e0c49bb2b8808efe15ae35e017c751595867355000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved continue and undid edits to _api fuction signatures Unchanged I left the edits to underlying fuctions, as they never used the argument in the code Issue #878 2020-07-27 11:29:15 -0500d8bc4555b03e0c49bb2b8808efe15ae35e017c75Removed continue and undid edits to _api fuction signatureseditadvance_clubb_core_module.F90silhs_api_module.F90d7e922c9ca41866d18f23e65a3478ec02c98874d1595867355000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved continue and undid edits to _api fuction signatures Unchanged I left the edits to underlying fuctions, as they never used the argument in the code Issue #878 2020-07-27 11:29:15 -0500d7e922c9ca41866d18f23e65a3478ec02c98874dRemoved continue and undid edits to _api fuction signatureseditsilhs_api_module.F90turbulent_adv_pdf.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90914eb7dae9384c3270c7b2c99eee761501283f0a1595888691000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI handled the "doubled" subprograms in turbulent_adv_pdf.F90. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Git Issue Reference: #878. 2020-07-27 17:24:51 -0500914eb7dae9384c3270c7b2c99eee761501283f0aI handled the "doubled" subprograms in turbulent_adv_pdf.F90.editturbulent_adv_pdf.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90silhs_importance_sample_module.F906bdf29385494f979f22af881d5da3986ecc321941595977411000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking change explained in larson-group/clubb#878 2020-07-28 18:03:31 -05006bdf29385494f979f22af881d5da3986ecc32194Making change explained in larson-group/clubb#878editsilhs_importance_sample_module.F90silhs_api_module.F90a5ab148417dedb799c61717b7a44a34430fed4451596045831000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved some unused variables (ifort) Unchanged Issue #878 2020-07-29 13:03:51 -0500a5ab148417dedb799c61717b7a44a34430fed445Removed some unused variables (ifort)editsilhs_api_module.F90mixing_length.F90advance_clubb_core_module.F903f2c34376025ac4068b02cef98494749c4e805251596045831000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved some unused variables (ifort) Unchanged Issue #878 2020-07-29 13:03:51 -05003f2c34376025ac4068b02cef98494749c4e80525Removed some unused variables (ifort)editmixing_length.F90editadvance_clubb_core_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90e842d008e8fe68edd0da7490e49615d91082013d1596062769000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding functionality to pass in a seed for the random number generator. This allows CPU restart runs to function correctly. Because this also changes the seed, this is BIT_CHANGING. larson-group/cam#129 2020-07-29 17:46:09 -0500e842d008e8fe68edd0da7490e49615d91082013dAdding functionality to pass in a seed for the random number generator. This allows CPU restart runs to function correctly. Because this also changes the seed, this is BIT_CHANGING. larson-group/cam#129editsilhs_api_module.F90editlatin_hypercube_driver_module.F90silhs_importance_sample_module.F908a2c24804fd34888208aa27b643ab52e33e067031596126782000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused import [-Wunused-variable] Unchanged Issue #878 2020-07-30 11:33:02 -05008a2c24804fd34888208aa27b643ab52e33e06703Removed unused import [-Wunused-variable]editsilhs_importance_sample_module.F90pdf_closure_module.F905bb72140ec0db6dab4e53e75ecbb8510c01aecfa1596663751000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves unused function calc_cloud_frac [-Wunused-function] Unchanged Issue #878 2020-08-05 16:42:31 -05005bb72140ec0db6dab4e53e75ecbb8510c01aecfaRemoves unused function calc_cloud_frac [-Wunused-function]editpdf_closure_module.F90lapack_wrap.F90c97ab5e47db3ed88257fcc45e1de5caef4afa3b71596668117000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comFixes style issue Moves comment from line over 100 characters long to the line above Issue #878 2020-08-05 17:55:17 -0500c97ab5e47db3ed88257fcc45e1de5caef4afa3b7Fixes style issueeditlapack_wrap.F90parameters_tunable.F907baba2d841e751bb06d54b66ddaddda8083e3d791596669082000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved import without only as it was unused Issue #878 2020-08-05 18:11:22 -05007baba2d841e751bb06d54b66ddaddda8083e3d79Removed import without only as it was unusededitparameters_tunable.F90parameters_tunable.F908391e3009cda96dfa0b4e0e3fe3784fe7ba2019e1596727382000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds mpishorthand back with only, it appears to be used somewhere Unchanged I didn't receive any warnings, because the code was incased in #ifdef SPMD Issue #878 2020-08-06 10:23:02 -05008391e3009cda96dfa0b4e0e3fe3784fe7ba2019eAdds mpishorthand back with only, it appears to be used somewhereeditparameters_tunable.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90206d072088418f9ca4f5ffb8ddd71121628adcea1597427608000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have pared two subprograms down to one again, this time for the subprograms found in module diffusion. As part of this, the calls to diffusion (for turbulent advection) in advance_microphys_module.F90 needed to be upgraded to use the fully optimized version of the code. As a result, this revision is BIT_CHANGING, but only for cases that use microphysics. A print out of the LHS array from the call to diffusion shows that numbers are in agreement until you reach the point of numerical roundoff. CLUBB Git Issue Reference: #878. 2020-08-14 12:53:28 -0500206d072088418f9ca4f5ffb8ddd71121628adceaI have pared two subprograms down to one again, this time for theeditadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editadvance_windm_edsclrm_module.F90editdiffusion.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90mean_adv.F90mono_flux_limiter.F904df2dce7f6eeccf089d00ca91c7a158eef35dd441597683534000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI pared down subprogram pairs again, this time for mean advection. The results from this revision are an exact match to the result from the previous revision for all cases. Larson Group Issue Reference: #878. 2020-08-17 11:58:54 -05004df2dce7f6eeccf089d00ca91c7a158eef35dd44I pared down subprogram pairs again, this time for mean advection.editmean_adv.F90editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90parameters_tunable.F90parameter_indices.F90advance_xm_wpxp_module.F900a804e329df446504755639568533d43c71aa38c1597689543000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added altitude_threshold to the list of CLUBB's tunable parameters. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. However, NetCDF output files are not an exact match, owing to the presence of the new tunable parameter listed in the output files. That technically makes this revision BIT_CHANGING. 2020-08-17 13:39:03 -05000a804e329df446504755639568533d43c71aa38cI added altitude_threshold to the list of CLUBB's tunable parameters.editadvance_xm_wpxp_module.F90editparameters_tunable.F90editparameter_indices.F90stats_zm_module.F90stats_sfc_module.F90stats_zt_module.F90afdb66e5b0ec6643891aa6759fe061492bbcd9421597868232000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduUpdating clubb variables to output their var_description in the form '[variable name using sci notation], [Textual descirption]' in an effort to provide more standardized titles for pyplotgenplots. 2020-08-19 15:17:12 -0500afdb66e5b0ec6643891aa6759fe061492bbcd942Updating clubb variables to output their var_description in the form '[variable name using sci notation], [Textual descirption]' in an effort to provide more standardized titles for pyplotgenplots.editstats_sfc_module.F90editstats_zm_module.F90editstats_zt_module.F90stats_zm_module.F90stats_zt_module.F90stats_sfc_module.F907466fd80923756687e034cef32675207de0dedfb1597950288000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduUpdating previous commit to not have lines over 100 characters. This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be). 2020-08-20 14:04:48 -05007466fd80923756687e034cef32675207de0dedfbUpdating previous commit to not have lines over 100 characters. This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be).editstats_zt_module.F90editstats_sfc_module.F90editstats_zm_module.F90output_netcdf.F90output_grads.F904e98f884fb43d06669dce6e29513e936baed3ecf1598309445000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds more debug lines Issue #881 2020-08-24 17:50:45 -05004e98f884fb43d06669dce6e29513e936baed3ecfAdds more debug lineseditoutput_grads.F90editoutput_netcdf.F90output_netcdf.F90output_grads.F90e3e4966b3e37f727fbee943081a479a078b4047d1598309843000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves debug lines Issue #881 2020-08-24 17:57:23 -0500e3e4966b3e37f727fbee943081a479a078b4047dRemoves debug lineseditoutput_netcdf.F90editoutput_grads.F90output_netcdf.F9027cebcd0b77b6b1a826b3d9ec6edc182131e52ca1598382981000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds debug lines and changes format Issue #881 2020-08-25 14:16:21 -050027cebcd0b77b6b1a826b3d9ec6edc182131e52caAdds debug lines and changes formateditoutput_netcdf.F90output_netcdf.F90e69122b8c716881ac5818694b75940a10ae4c3781598384297000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comModifies debug line Issue #881 2020-08-25 14:38:17 -0500e69122b8c716881ac5818694b75940a10ae4c378Modifies debug lineeditoutput_netcdf.F90output_netcdf.F9052244022211caf4b18ed05a98bc946b8c8e2f1bf1598388387000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comModifies debug line Issue #881 2020-08-25 15:46:27 -050052244022211caf4b18ed05a98bc946b8c8e2f1bfModifies debug lineeditoutput_netcdf.F90output_netcdf.F905c207cd1008c3a8d8b6961acfca06ffd42ebef381598472032000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comInitialize ncf%ntimes to 0 when opening netcdf for writing Issue #881 2020-08-26 15:00:32 -05005c207cd1008c3a8d8b6961acfca06ffd42ebef38Initialize ncf%ntimes to 0 when opening netcdf for writingeditoutput_netcdf.F90output_netcdf.F902855a9acb24ba4238edd801a4cd86335676153321598474183000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves debug lines Issue #881 2020-08-26 15:36:23 -05002855a9acb24ba4238edd801a4cd8633567615332Removes debug lineseditoutput_netcdf.F90stat_file_module.F901d2c3305ba6770d82b958af367a53bc676361dd81598555787000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comChanges length of units variable in stat_file_module from 20 to 25 BIT_CHANGING The previous length of 20 was cutting off the last character for the unit `kg^{3} kg^{-3} s^{-1}`, which was causing checkBudget.py to fail. I upped it to 25 because that is a nice number. Issue #881 2020-08-27 14:16:27 -05001d2c3305ba6770d82b958af367a53bc676361dd8Changes length of units variable in stat_file_module from 20 to 25editstat_file_module.F90output_2D_samples_module.F90e39f3a9976193002fed4fa62d4390801cb80a24c1600356560000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines. 2020-09-17 10:29:20 -0500e39f3a9976193002fed4fa62d4390801cb80a24cThis commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines.editoutput_2D_samples_module.F90silhs_api_module.F90f29953024a9efa8f3b396d8020a8588c691ef9a21600450428000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo). 2020-09-18 12:33:48 -0500f29953024a9efa8f3b396d8020a8588c691ef9a2Adding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo).editsilhs_api_module.F90setup_clubb_pdf_params.F90faaa09a9dd4400fece94bd30bdef37d5549483601600849530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the stats code in setup_clubb_pdf_params.F90 and in latin_hypercube_driver_module.F90 to loop over stat_update_var_pt up to level nz, rather than call stat_update_var. This is done to allow E3SM-CLUBB-SILHS to run without issue. In that code base, SILHS and CLUBB have differing numbers of vertical levels. The results in output files from this revision are an exact match to the results in output files from the previous revision for all cases. 2020-09-23 03:25:30 -0500faaa09a9dd4400fece94bd30bdef37d554948360I updated the stats code in setup_clubb_pdf_params.F90 and ineditsetup_clubb_pdf_params.F90latin_hypercube_driver_module.F90b61ffdbef6993ce180a00aff3936f775316396311600849530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the stats code in setup_clubb_pdf_params.F90 and in latin_hypercube_driver_module.F90 to loop over stat_update_var_pt up to level nz, rather than call stat_update_var. This is done to allow E3SM-CLUBB-SILHS to run without issue. In that code base, SILHS and CLUBB have differing numbers of vertical levels. The results in output files from this revision are an exact match to the results in output files from the previous revision for all cases. 2020-09-23 03:25:30 -0500b61ffdbef6993ce180a00aff3936f77531639631I updated the stats code in setup_clubb_pdf_params.F90 and ineditlatin_hypercube_driver_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90e0f1e9b683592ca8513e732120a20df0d2438f1e1601385131000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information. Also, "rlat" and "rlon" are changed to "lat_vals" and "lon_vals" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use "rlat" and "rlon" in the code where they interface with CLUBB.) See issue #887. 2020-09-29 08:12:11 -0500e0f1e9b683592ca8513e732120a20df0d2438f1eThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90editoutput_2D_samples_module.F90output_netcdf.F90stat_file_module.F90output_grads.F90stats_type_utilities.F90stats_clubb_utilities.F90clubb_api_module.F906482c644791940f0cad2e1cd53c61844f6f565001601385131000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information. Also, "rlat" and "rlon" are changed to "lat_vals" and "lon_vals" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use "rlat" and "rlon" in the code where they interface with CLUBB.) See issue #887. 2020-09-29 08:12:11 -05006482c644791940f0cad2e1cd53c61844f6f56500This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.editclubb_api_module.F90editoutput_netcdf.F90editstats_clubb_utilities.F90editstat_file_module.F90editoutput_grads.F90editstats_type_utilities.F90latin_hypercube_driver_module.F904fabcab89058c3d216ee6c6ef3ec977e14476e101601407797000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUndoing accidental find and replace. larson-group/cam#129 2020-09-29 14:29:57 -05004fabcab89058c3d216ee6c6ef3ec977e14476e10Undoing accidental find and replace. larson-group/cam#129editlatin_hypercube_driver_module.F90stats_zm_module.F90stats_sfc_module.F90stats_zt_module.F90835b96e74437f9a1ecd703a6682c75a19568c7c31601659393000http://carson.math.uwm.edu/jenkins/user/nchiefnchiefnchief@gmail.comUpdated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832 Moved wp2thvp just after the Cloud water contribution to wp2thvp panel 2020-10-02 12:23:13 -0500835b96e74437f9a1ecd703a6682c75a19568c7c3Updated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832editstats_zm_module.F90editstats_sfc_module.F90editstats_zt_module.F90stats_zt_module.F9016a52f15f8eec9cd96250e2824c9902bfe9256d51601737119000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduFix super serious 1 character bug that broke all of the things 2020-10-03 09:58:39 -050016a52f15f8eec9cd96250e2824c9902bfe9256d5Fix super serious 1 character bug that broke all of the thingseditstats_zt_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90advance_xm_wpxp_module.F90clubb_api_module.F90parameters_tunable.F90stats_variables.F90stats_zm_module.F90advance_helper_module.F9009188158a0ffe085e949f4497fd417be6fca2c501602204599000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing Zhun's changes to the CLUBB portion of his E3SM-CLUBB-SILHS branch to the clubb_E3SM_SILHS_branch_merge branch of CLUBB. The goal is for this code to eventually be merged into the CLUBB master. 2020-10-08 19:49:59 -050009188158a0ffe085e949f4497fd417be6fca2c50I am committing Zhun's changes to the CLUBB portion of hiseditparameters_tunable.F90editadvance_xm_wpxp_module.F90editstats_variables.F90editparameter_indices.F90editstats_zm_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editadvance_xp2_xpyp_module.F90stats_zm_module.F90121e67c4b158a54e87e7817956bb4a12f706e9c31604414984000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate stats_zm_module.F90 Added apostrophe to thl'thv' for consistency. 2020-11-03 08:49:44 -0600121e67c4b158a54e87e7817956bb4a12f706e9c3Update stats_zm_module.F90editstats_zm_module.F90parameters_tunable.F90parameter_indices.F90b65048d5fb0571e486c365ef27f0863fda44a2d01604690665000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max to the list of CLUBB's tunable parameters. 2020-11-06 13:24:25 -0600b65048d5fb0571e486c365ef27f0863fda44a2d0I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_maxeditparameters_tunable.F90editparameter_indices.F90advance_helper_module.F908d20eb1aa94009fcd9c89f703d10e9ba438e48451604691057000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI connected the new tunable parameters to advance_helper_module.F90. 2020-11-06 13:30:57 -06008d20eb1aa94009fcd9c89f703d10e9ba438e4845I connected the new tunable parameters to advance_helper_module.F90.editadvance_helper_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_helper_module.F9025ed680064c8ab4ee4f74c34b440257faf9fd70e1605747985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added l_use_shear_Richardson to CLUBB's configurable model flags. 2020-11-18 19:06:25 -060025ed680064c8ab4ee4f74c34b440257faf9fd70eI added l_use_shear_Richardson to CLUBB's configurable model flags.editmodel_flags.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editadvance_helper_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_xm_wpxp_module.F903dc70ce717348532fbc888574f7f0825ea8a401e1606141860000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. This is intended to help smooth high-frequency oscillations. Flag is set to false by default so has no impact on standard runs. 2020-11-23 08:31:00 -06003dc70ce717348532fbc888574f7f0825ea8a401eAdding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. This is intended to help smooth high-frequency oscillations. Flag is set to false by default so has no impact on standard runs.editmodel_flags.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90954c6c2dbef62f96755207776d56cbd9b4e9cb5d1606338607000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduIn order to prevent dycoms2_rf02_so from crashing, I replaced C7_Skw_fnc by 0.7 in upwp_pr4 and vpwp_pr4. This prevents an excessive wind gradient (dum/dz) from forming near the lower surface. This commit is BIT_CHANGING. For larson-group/e3sm#30. 2020-11-25 15:10:07 -0600954c6c2dbef62f96755207776d56cbd9b4e9cb5dIn order to prevent dycoms2_rf02_so from crashing,editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90e65f26062f1a7b61581f530a81532795bff72cbd1606338983000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI updated the recording of the budget terms for upwp_pr4 and vpwp_pr4. The simulation should be BFB, but because the budget term is updated consistently now, this commit is BIT_CHANGING. For larson-group/e3sm#30. 2020-11-25 15:16:23 -0600e65f26062f1a7b61581f530a81532795bff72cbdI updated the recording of the budget terms for upwp_pr4 and vpwp_pr4.editadvance_xm_wpxp_module.F90advance_helper_module.F90cacdab660c210f30178d483c8545d39a7b2568ab1606763229000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894. 2020-11-30 13:07:09 -0600cacdab660c210f30178d483c8545d39a7b2568abAdding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894.editadvance_helper_module.F90advance_helper_module.F90c2066af74a5d49e40558fc1d59352f118028c96c1606772963000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding some comments describing zm and zt for the new interface functions, and fixing a problem in the "array_sclr" versions of the functions. See issue #894. 2020-11-30 15:49:23 -0600c2066af74a5d49e40558fc1d59352f118028c96cAdding some comments describing zm and zt for the new interface functions, and fixing a problem in the "array_sclr" versions of the functions. See issue #894.editadvance_helper_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F9013f11f11a25ca3c19dd944fc13003b1542e86d201606856173000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying some array dimensions to speed up multiply_Cholesky. This cuts the cost of multiply_Cholesky by about 60% in cam but only about 15% in clubb_standalone. larson-group/cam#129 2020-12-01 14:56:13 -060013f11f11a25ca3c19dd944fc13003b1542e86d20Modifying some array dimensions to speed up multiply_Cholesky. This cuts the cost of multiply_Cholesky by about 60% in cam but only about 15% in clubb_standalone. larson-group/cam#129editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90stats_zt_module.F90stats_zm_module.F90stats_variables.F9051f8757f2ece02721c4c95797df4b6738111fead1607615302000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit replaces division by tau with multiplication by inverse tau in most cases. It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine. There is also some minor cleanup. See issue #899. 2020-12-10 09:48:22 -060051f8757f2ece02721c4c95797df4b6738111feadThis commit replaces division by tau with multiplication by inverse tau in most cases. It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine.editadvance_xp2_xpyp_module.F90editstats_zt_module.F90editadvance_xp3_module.F90editadvance_clubb_core_module.F90editstats_zm_module.F90editstats_variables.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90clubb_api_module.F90d08fdc395bde39bc7b72378b25216f1957c06ec91607641700000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a bug fix to the invrs_tau_zm equation that was introduced with the code merge from E3SM. I am also adding some changes to the clubb_api_module that should have been brought over at that time. This commit is BIT_CHANGING with the bug fix. 2020-12-10 17:08:20 -0600d08fdc395bde39bc7b72378b25216f1957c06ec9I am committing a bug fix to the invrs_tau_zm equation that waseditclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_zm_module.F90fc1a13766333b94e05f14ffbbd1ebbc88393c58d1607984534000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCLUBB and pyplotgen changes: 1. Putting smoothing on thlm before the Brunt-Vaisala frequency calculation. We find this helps smooth oscillations in that variable, see issue #894. Also fixing spelling mistake in stats_zm_module.F90, and adding bv_freq_sqd to nightly_stats.in. For all these reasons this commit is BIT_CHANGING, but only the thlm smoothing will change the physical results. 2. Pyplotgen: I moved Brunt-Vaisala to VariableGroupBase.py so it should show up in the nightly plots, I got rid of VariableGroupTaus from the default Case definitions, and made a couple other minor changes including making the solid line thicker for standard CLUBB plots. 2020-12-14 16:22:14 -0600fc1a13766333b94e05f14ffbbd1ebbc88393c58dCLUBB and pyplotgen changes:editadvance_clubb_core_module.F90editstats_zm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp3_module.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90dc88808be3203de9536f2dbe34a77dc209d903381608165333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed the LMM stepping bug that was affecting E3SM (because l_predict_upwp_vpwp is false over there) in advance_xm_wpxp_module.F90. I also added it to all predictive fields. The results in NetCDF output files from this revision is an exact match to the results in NetCDF output files from the previous revision for all cases because LMM stepping is turned off by default. 2020-12-16 18:35:33 -0600dc88808be3203de9536f2dbe34a77dc209d90338I fixed the LMM stepping bug that was affecting E3SM (becauseeditadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_xp3_module.F90editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90378b99093fca66e7223cae49ad0ca088e0f0148a1608165625000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed alignment. 2020-12-16 18:40:25 -0600378b99093fca66e7223cae49ad0ca088e0f0148aFixed alignment.editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90parameters_tunable.F90model_flags.F90parameter_indices.F90clubb_api_module.F90df97ac5bcdd52b069a9cc74f9321c3ffb5cc69811608225144000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two "magic numbers" in the code. The primary code changes are in advance_clubb_core_module.F90. This is a BIT_CHANGING commit due to the new parameters affecting the netcdf output but the physical results should remain the same for now. See relevant issues #894 and #897. 2020-12-17 11:12:24 -0600df97ac5bcdd52b069a9cc74f9321c3ffb5cc6981This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two "magic numbers" in the code. The primary code changes are in advance_clubb_core_module.F90.editmodel_flags.F90editadvance_clubb_core_module.F90editparameters_tunable.F90editclubb_api_module.F90editparameter_indices.F90parameter_indices.F90034049b46393a096da28099eef60ca5801a7f3291608239444000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameter_indices.F90 Switching the order of two variables. Was causing the values of these parameters to be reversed in some output files (but no effect on physical results). 2020-12-17 15:10:44 -0600034049b46393a096da28099eef60ca5801a7f329Update parameter_indices.F90editparameter_indices.F90model_flags.F903992f76b8f461365f321eddd00d1951c7540475a1608325274000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate model_flags.F90 Setting l_use_shear_Richardson to false in model_flags.in to be consistent with the default configurable_model_flags.in file. This will ensure consistency with other nightly tests (eg WRF and SAM) that do not read configureable_model_flags.in. 2020-12-18 15:01:14 -06003992f76b8f461365f321eddd00d1951c7540475aUpdate model_flags.F90editmodel_flags.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F9013cf0163bb65ea786b232a7a4ebea978fe958d441610388625000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884. 2021-01-11 12:10:25 -060013cf0163bb65ea786b232a7a4ebea978fe958d44Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.editclubb_api_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90217a6182be062dc94ac62d8880a181ec82011b971610658263000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comSeparating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901. This commit is BIT_CHANGING, both because it will change the names of parameters output to netcdf, and because it changes the results of the more sensitive CLUBB test cases (like ARM_97), since there is an order-of-operations change involved in the subroutine "wp2_term_pr3_rhs" in advance_wp2_wp3_module.F90. 2021-01-14 15:04:23 -0600217a6182be062dc94ac62d8880a181ec82011b97Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editparameters_tunable.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90editparameter_indices.F90silhs_api_module.F90latin_hypercube_driver_module.F907e1baf2139189deaa6c2da15181bb8cdcf55c4b51610686189000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am now passing vert_decorr_coef into SILHS instead of involving a USE statement. 2021-01-14 22:49:49 -06007e1baf2139189deaa6c2da15181bb8cdcf55c4b5I am now passing vert_decorr_coef into SILHS instead of involvingeditsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F9074bc7b14e4dea9c34e9d28071afac13e80a79e821610740288000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to "C_5" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up). This commit is BIT_CHANGING, similar to the previous commit, because of the order-of-operations change in the pr2 term for up2 and vp2. This leaves more stable cases like BOMEX bit-for-bit identical, but changes outcomes for more senstive cases like ARM_97. See issue #901. 2021-01-15 13:51:28 -060074bc7b14e4dea9c34e9d28071afac13e80a79e82This commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to "C_5" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up).editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90advance_xp2_xpyp_module.F904af03a62d94eec9f15856429b959b164e0c73d541611079334000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding a test to make sure new C_uu_buoy parameter is within the valid range. See #901. 2021-01-19 12:02:14 -06004af03a62d94eec9f15856429b959b164e0c73d54Adding a test to make sure new C_uu_buoy parameter is within the valid range. See #901.editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90parameter_indices.F90clubb_api_module.F90stats_zt_module.F90stats_variables.F90parameters_tunable.F90405016e402e3fa788758ba73639fdd4c892e95ad1611176566000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit renames the wp3 budget term from "bp2" to "pr_turb", and renames the related parameter "C15" to "C_wp3_turb". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files. This commit is BIT_CHANGING, but only because it renames a variable and a parameter. Results should be bit-for-bit with previous results. See issue #901. 2021-01-20 15:02:46 -0600405016e402e3fa788758ba73639fdd4c892e95adThis commit renames the wp3 budget term from "bp2" to "pr_turb", and renames the related parameter "C15" to "C_wp3_turb". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files.editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editstats_zt_module.F90editmodel_flags.F90editparameter_indices.F90editstats_variables.F90editclubb_api_module.F90editparameters_tunable.F90parameters_silhs.F90silhs_api_module.F907a13d2a715a4954d2fb1e1b2485f5f56026e77341611270040000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis will allow for a better interface of SILHS parameter vert_decorr_coef with host model codes. 2021-01-21 17:00:40 -06007a13d2a715a4954d2fb1e1b2485f5f56026e7734This will allow for a better interface of SILHS parametereditparameters_silhs.F90editsilhs_api_module.F90parameters_silhs.F907bd738c4f823c16c0e3b7fe2e5eb25382dabd2171611270711000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a preprocessor command. 2021-01-21 17:11:51 -06007bd738c4f823c16c0e3b7fe2e5eb25382dabd217Fixed a preprocessor command.editparameters_silhs.F90silhs_api_module.F9050254f89a49d5b72abedf72ac7356f92ced3aca51611288887000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI'm adding the api entry for read_silhs_parameters, called read_silhs_parameters_api. 2021-01-21 22:14:47 -060050254f89a49d5b72abedf72ac7356f92ced3aca5I'm adding the api entry for read_silhs_parameters, callededitsilhs_api_module.F90silhs_api_module.F90ad27d2d29f4e532b67fb52c8f075e3251403e9c61611608667000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I'm adding the api entry for read_silhs_parameters, called" This reverts commit f2dc5c25386fd37bc1bf8ccff7844c66ee79ac36. 2021-01-25 15:04:27 -0600ad27d2d29f4e532b67fb52c8f075e3251403e9c6Revert "I'm adding the api entry for read_silhs_parameters, called"editsilhs_api_module.F90parameters_silhs.F909672d1836e6cf847d0ab804cd0782b3bc22c22ef1611608682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Fixed a preprocessor command." This reverts commit b349140012f53280aaf8294c1c3d6bc95f8d85b2. 2021-01-25 15:04:42 -06009672d1836e6cf847d0ab804cd0782b3bc22c22efRevert "Fixed a preprocessor command."editparameters_silhs.F90parameters_silhs.F90silhs_api_module.F9056af2a083547f0f5d0fc34ff2cd726898f19d8d41611608697000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "This will allow for a better interface of SILHS parameter" This reverts commit 47032b78a9fd8ddf19c30483abff933e099c9e43. 2021-01-25 15:04:57 -060056af2a083547f0f5d0fc34ff2cd726898f19d8d4Revert "This will allow for a better interface of SILHS parameter"editparameters_silhs.F90editsilhs_api_module.F90silhs_api_module.F90bf77152b7ac0acae64e849466f25f2bf3ccf986f1611609376000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated silhs_api_module so that vert_decorr_coef is publically available for some host models (e.g. SAM and WRF). 2021-01-25 15:16:16 -0600bf77152b7ac0acae64e849466f25f2bf3ccf986fI updated silhs_api_module so that vert_decorr_coef is publically availableeditsilhs_api_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_xm_wpxp_module.F90turbulent_adv_pdf.F904165ae0836d60e74a5eee2e1bf5f1be885a1ff6a1611674403000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comIncorporating Shixuan Zhang's and Chris Vogl's "l_godunov_upwind_wpxp_ta" flag and related code. The flag is set to false by default so results are unaffected. See #902. 2021-01-26 09:20:03 -06004165ae0836d60e74a5eee2e1bf5f1be885a1ff6aIncorporating Shixuan Zhang's and Chris Vogl's "l_godunov_upwind_wpxp_ta" flag and related code. The flag is set to false by default so results are unaffected. See #902.editadvance_clubb_core_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90editturbulent_adv_pdf.F90advance_xm_wpxp_module.F90bdc11caa173990eaf25cc2e91a95c472ab5a6abd1611776290000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term. This commit is BIT_CHANGING. See #901. 2021-01-27 13:38:10 -0600bdc11caa173990eaf25cc2e91a95c472ab5a6abdUpdating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term.editadvance_xm_wpxp_module.F90latin_hypercube_driver_module.F9063c8e9a172cdc920b1f49fd39aafc1f0503cc1a41611783834000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving the acc update host directive to after the wait directives in silhs. Since silhs runs with asyncronous kernel calls the update was occasionally happening before some clipping was finished, causing problems in assert_correct_cloud_normal. This is only a problem when compiling with OpenACC enabled, so it should be bit identical for all our tests. larson-group/cam#129 2021-01-27 15:43:54 -060063c8e9a172cdc920b1f49fd39aafc1f0503cc1a4Moving the acc update host directive to after the wait directives in silhs. Since silhs runs with asyncronous kernel calls the update was occasionally happening before some clipping was finished, causing problems in assert_correct_cloud_normal. This is only a problem when compiling with OpenACC enabled, so it should be bit identical for all our tests. larson-group/cam#129editlatin_hypercube_driver_module.F90parameters_tunable.F9076c180d60652ae4e949b261d8ed4a196f14f312d1611840176000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameters_tunable.F90 Updating to match default tunable_parameters.in. 2021-01-28 07:22:56 -060076c180d60652ae4e949b261d8ed4a196f14f312dUpdate parameters_tunable.F90editparameters_tunable.F90silhs_api_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90math_utilities.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90output_2D_samples_module.F900ad9f3a979d7ee40ab1ed902502468de4a46c2f61612480793000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReording vertical and subcolumn dimensions in SILHS. This is BIT_CHANING in some cases, seemly due to an outputting error for the precip_rate field, but plotted results are identical. larson-group/cam#129 2021-02-04 17:19:53 -06000ad9f3a979d7ee40ab1ed902502468de4a46c2f6Reording vertical and subcolumn dimensions in SILHS. This is BIT_CHANING in some cases, seemly due to an outputting error for the precip_rate field, but plotted results are identical. larson-group/cam#129editsilhs_api_module.F90editest_kessler_microphys_module.F90edittransform_to_pdf_module.F90editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90editlh_microphys_var_covar_module.F90editmath_utilities.F90latin_hypercube_driver_module.F900f7d70b05fdf184b57e9ceaa62e16b95da2948351613506124000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging dimension order of rand_pool to make consistent with previous reorderings. This is BIT_CHANGING for silhs cases since it changes the order in which random numbers are used. larson-group/cam#129 2021-02-16 14:08:44 -06000f7d70b05fdf184b57e9ceaa62e16b95da294835Changing dimension order of rand_pool to make consistent with previous reorderings. This is BIT_CHANGING for silhs cases since it changes the order in which random numbers are used. larson-group/cam#129editlatin_hypercube_driver_module.F90calendar.F90clubb_api_module.F90input_reader.F90pos_definite_module.F90output_netcdf.F90diagnose_correlations_module.F90grid_class.F90parameters_tunable.F90new_pdf.F90sponge_layer_damping.F90advance_helper_module.F90mixing_length.F90file_functions.F90output_grads.F90saturation.F90advance_clubb_core_module.F90fill_holes.F90stats_clubb_utilities.F90interpolation.F90new_hybrid_pdf_main.F90matrix_operations.F90corr_varnce_module.F9076854dadc00cb0ece5d773ef7cc623bf83980d951613874481000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comChanges non-success `stop` statements to `error stop` Changes files in the src/CLUBB_core directory larson-group/sys_admin#725 2021-02-20 20:28:01 -060076854dadc00cb0ece5d773ef7cc623bf83980d95Changes non-success `stop` statements to `error stop`editfill_holes.F90editmatrix_operations.F90editinput_reader.F90editoutput_grads.F90editpos_definite_module.F90editadvance_helper_module.F90editsaturation.F90editdiagnose_correlations_module.F90editstats_clubb_utilities.F90editcorr_varnce_module.F90editfile_functions.F90editnew_hybrid_pdf_main.F90editgrid_class.F90editmixing_length.F90editoutput_netcdf.F90editclubb_api_module.F90editinterpolation.F90editparameters_tunable.F90editadvance_clubb_core_module.F90editnew_pdf.F90editcalendar.F90editsponge_layer_damping.F90silhs_importance_sample_module.F90est_kessler_microphys_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F90a4ddd4f89fffdfbf923b7b3d28c3e292777c24b41613874481000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comChanges non-success `stop` statements to `error stop` Changes files in `src/SILHS` directory larson-group/sys_admin#725 2021-02-20 20:28:01 -0600a4ddd4f89fffdfbf923b7b3d28c3e292777c24b4Changes non-success `stop` statements to `error stop`editoutput_2D_samples_module.F90editest_kessler_microphys_module.F90editsilhs_importance_sample_module.F90editlatin_hypercube_driver_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90turbulent_adv_pdf.F90d985b8a9601d3a02a009424bcc801294b1eb04631614367438000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902. 2021-02-26 13:23:58 -0600d985b8a9601d3a02a009424bcc801294b1eb0463Adding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902.editadvance_xp2_xpyp_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90editturbulent_adv_pdf.F90advance_wp2_wp3_module.F908aebfdf2b109ec3d6fdc434375805fc1a4d6760a1614626041000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comTurning on wp3 pr_turb term. This commit sets C_wp3_turb=1 and l_use_tke_in_wp3_pr_turb_term=.true. and is BIT_CHANGING. Also in the pr_turb term I have converted the wp2_zt outside the derivative to a wp2 (momentum levels) inside the derivative. See #884. 2021-03-01 13:14:01 -06008aebfdf2b109ec3d6fdc434375805fc1a4d6760aTurning on wp3 pr_turb term.editadvance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90surface_varnce_module.F90clubb_api_module.F90f9dd235e6cea6c1c32168b7122b2054d078380481615074952000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged the variable up2_vp2_factor to up2_sfc_coef in all files 2021-03-06 17:55:52 -0600f9dd235e6cea6c1c32168b7122b2054d07838048Changed the variable up2_vp2_factor to up2_sfc_coef in all fileseditsurface_varnce_module.F90editparameter_indices.F90editclubb_api_module.F90editparameters_tunable.F90advance_clubb_core_module.F90surface_varnce_module.F9013d8c614dd9a7ab539ab349ebeab61758bb666ae1615324148000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added an option to improve dry, convecting boundary layers. The new option is triggered by setting l_vary_convect_depth=.true. The option reduces the spurious surface spike in thlp2 in Wangara. The option calculates the Deardorff convective velocity using a variable estimate of layer depth based on the depth over which wpthlp is positive near the ground. thlp2_sfc is then diagnosed by assuming maximal correlation between thl and vertical velocity, w. Currently, l_vary_convect_depth is set to false, and hence the answers remain BFB. For #905. 2021-03-09 15:09:08 -060013d8c614dd9a7ab539ab349ebeab61758bb666aeI added an option to improve dry, convecting boundary layers.editadvance_clubb_core_module.F90editsurface_varnce_module.F90advance_xp2_xpyp_module.F90e5caa86acac2277408322ef32ba0587ed9194fe31615986503000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comThis commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. In other words, up2_dp1 <---> up2_pr1 and vp2_dp1 <---> vp2_pr1. This makes the terms in these equations more consistent with the terms in the wp2 equation. I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped). 2021-03-17 08:08:23 -0500e5caa86acac2277408322ef32ba0587ed9194fe3This commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. In other words, up2_dp1 <---> up2_pr1 and vp2_dp1 <---> vp2_pr1. This makes the terms in these equations more consistent with the terms in the wp2 equation. I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped).editadvance_xp2_xpyp_module.F90stats_sfc_module.F90grid_class.F90advance_clubb_core_module.F90surface_varnce_module.F90sfc_varnce_module.F90numerical_check.F90df7d5489d978444c7ca8a4ae9cd9f6411d9f024f1616100132000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged surface to sfc in all instances where requested 2021-03-18 15:42:12 -0500df7d5489d978444c7ca8a4ae9cd9f6411d9f024fChanged surface to sfc in all instances where requesteddeletesurface_varnce_module.F90addsfc_varnce_module.F90editgrid_class.F90editnumerical_check.F90editstats_sfc_module.F90editadvance_clubb_core_module.F90stats_sfc_module.F90b963c2ef6d96de64d0efc4523c28aae810cd0b941616102621000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in stats_sfc_module.F90 2021-03-18 16:23:41 -0500b963c2ef6d96de64d0efc4523c28aae810cd0b94Undid sfc change in stats_sfc_module.F90editstats_sfc_module.F90grid_class.F90b47281e4a8aa2231716f381b9c11a2b2a6ad9ce21616102639000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change to grid_class.F90 2021-03-18 16:23:59 -0500b47281e4a8aa2231716f381b9c11a2b2a6ad9ce2Undid sfc change to grid_class.F90editgrid_class.F90numerical_check.F90ee6b3685c962fdd07d6c405a74bc22b2fed6cb121616102659000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in numerical_check.F90 2021-03-18 16:24:19 -0500ee6b3685c962fdd07d6c405a74bc22b2fed6cb12Undid sfc change in numerical_check.F90editnumerical_check.F90setup_clubb_pdf_params.F90clubb_api_module.F905a8b661e439baa46b7deabf6e7625a2a46dad1881616623371000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129 2021-03-24 17:02:51 -05005a8b661e439baa46b7deabf6e7625a2a46dad188Pushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129editsetup_clubb_pdf_params.F90editclubb_api_module.F90setup_clubb_pdf_params.F90626a34a5add8859578c79290929d28b9a582a9c81616632453000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBroke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129 2021-03-24 19:34:13 -0500626a34a5add8859578c79290929d28b9a582a9c8Broke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff71616632485000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed typo bug. larson-group/cam#129 2021-03-24 19:34:45 -0500e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff7Fixed typo bug. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F9083811d1b6b9ea21bf7de99ca5a089c8f577ea1f01616795595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushed down some more loops in setup_pdf_params. All bit-for-bit. larson-group/cam#129 2021-03-26 16:53:15 -050083811d1b6b9ea21bf7de99ca5a089c8f577ea1f0Pushed down some more loops in setup_pdf_params. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F907d3c765381a54780d7afe18727357a13cf8f89021617149848000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore pushing loops down. All bit-for-bit. larson-group/cam#129 2021-03-30 19:17:28 -05007d3c765381a54780d7afe18727357a13cf8f8902More pushing loops down. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F908a392e2906267efd3cf17d2218d908bc642e2b651617226775000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing. All bit-for-bit. larson-group/cam#129 2021-03-31 16:39:35 -05008a392e2906267efd3cf17d2218d908bc642e2b65More loop pushing. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F905eea93b439a4b65bd66ee2c99ea450c12700d4651617308426000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing. All bit-for-bit. larson-group/cam#129 2021-04-01 15:20:26 -05005eea93b439a4b65bd66ee2c99ea450c12700d465More loop pushing. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90ddd03bfb9937fcf53449bd60f6daeab26a1c1a4e1617736320000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding comments explaining why component_corr_x_hm_n_ip uses corr_array_n_cloud twice. larson-group/cam#129 2021-04-06 14:12:00 -0500ddd03bfb9937fcf53449bd60f6daeab26a1c1a4eAdding comments explaining why component_corr_x_hm_n_ip uses corr_array_n_cloud twice. larson-group/cam#129editsetup_clubb_pdf_params.F90precipitation_fraction.F90setup_clubb_pdf_params.F903dfd524a9fb317bb2ba2bc1144725e4e6b1303f91617751722000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing, all bit-for-bit. larson-group/cam#129 2021-04-06 18:28:42 -05003dfd524a9fb317bb2ba2bc1144725e4e6b1303f9More loop pushing, all bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90editprecipitation_fraction.F90mono_flux_limiter.F9020d8d29a86a4bd146281a4e07fde77759bccaae51617751805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding one_half to use statement. This was a bug preventing compilation when using the ifort compiler with the MKL functions. 2021-04-06 18:30:05 -050020d8d29a86a4bd146281a4e07fde77759bccaae5Adding one_half to use statement. This was a bug preventing compilation when using the ifort compiler with the MKL functions.editmono_flux_limiter.F90mono_flux_limiter.F90459d33c483a695d8c5280a668c77b1ca11e1b6701617819873000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving use statement for one_half inside ifdef, since it is only needed if compilation with MKL functions is enabled. 2021-04-07 13:24:33 -0500459d33c483a695d8c5280a668c77b1ca11e1b670Moving use statement for one_half inside ifdef, since it is only needed if compilation with MKL functions is enabled.editmono_flux_limiter.F90setup_clubb_pdf_params.F90836ef0b2febf72beed7ee82884964687e6a409841617916504000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReducing the number of calls to Cholesky_factor. This is bit-for-bit for all standalone cases and our coarse res version of cam. larson-group/cam#129 2021-04-08 16:15:04 -0500836ef0b2febf72beed7ee82884964687e6a40984Reducing the number of calls to Cholesky_factor. This is bit-for-bit for all standalone cases and our coarse res version of cam. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90clubb_api_module.F9081f99a736be5ecab38c06863bced4837d694c08e1617922941000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129 2021-04-08 18:02:21 -050081f99a736be5ecab38c06863bced4837d694c08eReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129editclubb_api_module.F90editsetup_clubb_pdf_params.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F906392e9cc0de299d0de9ce962ba5da5104b1a87561617922941000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129 2021-04-08 18:02:21 -05006392e9cc0de299d0de9ce962ba5da5104b1a8756Reordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90setup_clubb_pdf_params.F90ca2f0784973138d286bb3bef8f26ac27e039fbef1617998854000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPerformance improvements from chaning loop orderings and redundant operation reduction. All bit-for-bit. larson-group/cam#129 2021-04-09 15:07:34 -0500ca2f0784973138d286bb3bef8f26ac27e039fbefPerformance improvements from chaning loop orderings and redundant operation reduction. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F9006ffbc2944cd085910cc68344ca3646934145a931618000160000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions on some arrays. This is bit-for-bit. larson-group/cam#129 2021-04-09 15:29:20 -050006ffbc2944cd085910cc68344ca3646934145a93Reordering dimensions on some arrays. This is bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90746f45a04d2e889f4feb1dfb69b0a7f5b19e04c21618001640000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReducing operations. All bit-for-bit. larson-group/cam#129 2021-04-09 15:54:00 -0500746f45a04d2e889f4feb1dfb69b0a7f5b19e04c2Reducing operations. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90pdf_utilities.F90setup_clubb_pdf_params.F900b60550541c0d76dcc5a42894822d0d3c4899b7c1618007396000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding 2D subroutine versions of some functions to improve performance. This is all bit-for-bit. larson-group/cam#129 2021-04-09 17:29:56 -05000b60550541c0d76dcc5a42894822d0d3c4899b7cAdding 2D subroutine versions of some functions to improve performance. This is all bit-for-bit. larson-group/cam#129editpdf_utilities.F90editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F9075c4cd9461c1cca785c96bb85d5bad923b3084151618014437000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSome small cleanup, all just formatting. larson-group/cam#129 2021-04-09 19:27:17 -050075c4cd9461c1cca785c96bb85d5bad923b308415Some small cleanup, all just formatting. larson-group/cam#129editsetup_clubb_pdf_params.F90advance_clubb_core_module.F903dafc67dc7207d5794d9a4c66c095e7366e4afbf1618072037000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged ustar from an array to a scalar issue #909 2021-04-10 11:27:17 -05003dafc67dc7207d5794d9a4c66c095e7366e4afbfChanged ustar from an array to a scalar issue #909editadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F903c65841d1646f218145bbfc448e694e0b819c0961618079098000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRenamed Ri_zm to sqrt_Ri_zm and iRi_zm to isqrt_Ri_zm #909 2021-04-10 13:24:58 -05003c65841d1646f218145bbfc448e694e0b819c096Renamed Ri_zm to sqrt_Ri_zm and iRi_zm to isqrt_Ri_zm #909editadvance_clubb_core_module.F90editstats_variables.F90editstats_zm_module.F90advance_clubb_core_module.F90mixing_length.F90083074dbb32c7c4fbee30f0ec93ee1108ad00f821618088325000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduCreated new subroutine and ensured it's BFB. All cases run sucessfully #909 2021-04-10 15:58:45 -0500083074dbb32c7c4fbee30f0ec93ee1108ad00f82Created new subroutine and ensured it's BFB. All cases run sucessfully #909editadvance_clubb_core_module.F90editmixing_length.F90mixing_length.F90advance_clubb_core_module.F90cc9e3f188d62b243bb65dfea2082e7b22ad21f7c1618674656000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduadded in missing flag which was causing memory errors #909 2021-04-17 10:50:56 -0500cc9e3f188d62b243bb65dfea2082e7b22ad21f7cadded in missing flag which was causing memory errors #909editmixing_length.F90editadvance_clubb_core_module.F90mixing_length.F905630905cce78e4f538126d288ffeae5ebffb3bd71618679816000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.educonfirmed BFB with e3sam flag set to false and true, no other issues detected in mixing_length #909 2021-04-17 12:16:56 -05005630905cce78e4f538126d288ffeae5ebffb3bd7confirmed BFB with e3sam flag set to false and true, no other issues detected in mixing_length #909editmixing_length.F90stats_zm_module.F902838d3adef376202e2fcf4112c1ee43c94231c721619035906000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate stats_zm_module.F90 Removed units from description to eliminate redundancy. 2021-04-21 15:11:46 -05002838d3adef376202e2fcf4112c1ee43c94231c72Update stats_zm_module.F90editstats_zm_module.F90setup_clubb_pdf_params.F90bb689e837ad32290f9e7cac225a1266db2bed0f11619041140000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding dummy dimensions to calls to procedures that operate over 2 dimensions now, and remove 1D versions of those procedures. larson-group/cam#129 2021-04-21 16:39:00 -0500bb689e837ad32290f9e7cac225a1266db2bed0f1Adding dummy dimensions to calls to procedures that operate over 2 dimensions now, and remove 1D versions of those procedures. larson-group/cam#129editsetup_clubb_pdf_params.F90hydromet_pdf_parameter_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90a8e1b1620d5ae765286eb6469fd893dc19b5e1541619140595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSeparating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129 2021-04-22 20:16:35 -0500a8e1b1620d5ae765286eb6469fd893dc19b5e154Separating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129editclubb_api_module.F90edithydromet_pdf_parameter_module.F90editsetup_clubb_pdf_params.F90silhs_api_module.F90latin_hypercube_driver_module.F90silhs_importance_sample_module.F908a23c35833576ef995f50fdaaff19c901989d3511619140595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSeparating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129 2021-04-22 20:16:35 -05008a23c35833576ef995f50fdaaff19c901989d351Separating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129editlatin_hypercube_driver_module.F90editsilhs_api_module.F90editsilhs_importance_sample_module.F90precipitation_fraction.F90pdf_utilities.F90setup_clubb_pdf_params.F90clubb_api_module.F909291cc6f06418e89d903e401f04caefe62ee72961619220291000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFormatting and condensing if statements. All bit-for-bit. larson-group/cam#129 2021-04-23 18:24:51 -05009291cc6f06418e89d903e401f04caefe62ee7296Formatting and condensing if statements. All bit-for-bit. larson-group/cam#129editprecipitation_fraction.F90editsetup_clubb_pdf_params.F90editclubb_api_module.F90editpdf_utilities.F90setup_clubb_pdf_params.F90clubb_api_module.F90411f4fc5a1518d746b88dc254811231681d0a6581619223182000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking hydromet_pdf_params optional in setup_pdf_parameters. larson-group/cam#129 2021-04-23 19:13:02 -0500411f4fc5a1518d746b88dc254811231681d0a658Making hydromet_pdf_params optional in setup_pdf_parameters. larson-group/cam#129editsetup_clubb_pdf_params.F90editclubb_api_module.F90mixing_length.F90advance_clubb_core_module.F905733151420dd3f25f57b270e0a6eb4c38e889ea81619555277000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@brock.math.uwm.eduReformatted mixing length to be more compliant with the coding standard #909 2021-04-27 15:27:57 -05005733151420dd3f25f57b270e0a6eb4c38e889ea8Reformatted mixing length to be more compliant with the coding standard #909editmixing_length.F90editadvance_clubb_core_module.F90mixing_length.F909dbd2b39f631f080bb509e1dff6ee5eadb0aebea1619555727000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@brock.math.uwm.eduadded a reference to new subroutine #909 2021-04-27 15:35:27 -05009dbd2b39f631f080bb509e1dff6ee5eadb0aebeaadded a reference to new subroutine #909editmixing_length.F90silhs_api_module.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F90e32474f6f7a50bbc43c9352a829d8f51919fb2541619728413000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129 2021-04-29 15:33:33 -0500e32474f6f7a50bbc43c9352a829d8f51919fb254Adding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129editest_kessler_microphys_module.F90editsilhs_api_module.F90editlatin_hypercube_driver_module.F90editlh_microphys_var_covar_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90pdf_closure_module.F90pdf_parameter_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90435b6db3c46b177b9001d80a01dc514a6d7d21081619728413000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129 2021-04-29 15:33:33 -0500435b6db3c46b177b9001d80a01dc514a6d7d2108Adding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129editpdf_parameter_module.F90editadvance_xp2_xpyp_module.F90editstats_clubb_utilities.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editsetup_clubb_pdf_params.F90editmixing_length.F90editnumerical_check.F90editpdf_closure_module.F90latin_hypercube_driver_module.F9033438476ecd7e056fa1c9acad479f9e5d07275381619732066000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing lines that exceed 100 characters. 2021-04-29 16:34:26 -050033438476ecd7e056fa1c9acad479f9e5d0727538Fixing lines that exceed 100 characters.editlatin_hypercube_driver_module.F90mixing_length.F90input_reader.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F902914cd2f18a991c5aac68c9e4decb9a671bdc24c1619732066000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing lines that exceed 100 characters. 2021-04-29 16:34:26 -05002914cd2f18a991c5aac68c9e4decb9a671bdc24cFixing lines that exceed 100 characters.editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editinput_reader.F90editsetup_clubb_pdf_params.F90editmixing_length.F90latin_hypercube_driver_module.F906cccc97628f336e094482e6d6b8dd656918e5d1e1619735494000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loops related to pdf_params down. larson-group/cam#129 2021-04-29 17:31:34 -05006cccc97628f336e094482e6d6b8dd656918e5d1ePushing loops related to pdf_params down. larson-group/cam#129editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90f1f64bdc39de16e140bec54e02a24bfd454349aa1620078062000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.educlubb warnings introduced from merge have been removed #909 2021-05-03 16:41:02 -0500f1f64bdc39de16e140bec54e02a24bfd454349aaclubb warnings introduced from merge have been removed #909editadvance_clubb_core_module.F90stats_zm_module.F90sigma_sqd_w_module.F90c4b005c8774c7fcda4a675f93c5048e8763ddcb51620165243000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@uwm.eduChanged safeguard threshold in sigma_sqd_w. This is BIT_CHANGING. For ticket #917. 2021-05-04 16:54:03 -0500c4b005c8774c7fcda4a675f93c5048e8763ddcb5Changed safeguard threshold in sigma_sqd_w.editstats_zm_module.F90editsigma_sqd_w_module.F90advance_wp2_wp3_module.F90stats_variables.F90stats_zt_module.F900ff19bb07774aa8f1428a14343d3011006c29fe21620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding some new code that puts the diffusion term d(wp2*em)/dz into a new function, creates a new wp3 budget term (wp3_pr_dfsn), and adds that new budget term to pyplotgen. 2021-05-11 08:33:03 -05000ff19bb07774aa8f1428a14343d3011006c29fe2Adding some new code that puts the diffusion term d(wp2*em)/dz into a new function, creates a new wp3 budget term (wp3_pr_dfsn), and adds that new budget term to pyplotgen.editstats_zt_module.F90editadvance_wp2_wp3_module.F90editstats_variables.F90advance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90f45b1489eb4795f960dae317fe379c48a4fa12ab1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding new coefficient to control the wp3 pressure diffusion term. 2021-05-11 08:33:03 -0500f45b1489eb4795f960dae317fe379c48a4fa12abAdding new coefficient to control the wp3 pressure diffusion term.editparameter_indices.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editparameters_tunable.F90advance_wp2_wp3_module.F902bb6466cf7c606f404b75d87bdaa24c8a91f83bf1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comSome minor updates to advance_wp2_wp3 relevant to the pr_turb and pr_dfsn terms. 2021-05-11 08:33:03 -05002bb6466cf7c606f404b75d87bdaa24c8a91f83bfSome minor updates to advance_wp2_wp3 relevant to the pr_turb and pr_dfsn terms.editadvance_wp2_wp3_module.F90stats_clubb_utilities.F90advance_wp2_wp3_module.F90f31e107d90fe179831f51a9c36a6f2120ff92f5b1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comConverting em*d(em)/dz to d(em^2)/dz in the wp3_pr_turb term and fixing a typo. 2021-05-11 08:33:03 -0500f31e107d90fe179831f51a9c36a6f2120ff92f5bConverting em*d(em)/dz to d(em^2)/dz in the wp3_pr_turb term and fixing a typo.editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90940e82e287987a4884a22037d10ec38837f137d41620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comRenaming C_wp3_turb --> C_wp3_pr_turb (BIT_CHANGING due to name change in netcdf output). See #884. 2021-05-11 08:33:03 -0500940e82e287987a4884a22037d10ec38837f137d4Renaming C_wp3_turb --> C_wp3_pr_turb (BIT_CHANGING due to name change in netcdf output).editparameter_indices.F90editparameters_tunable.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90pdf_closure_module.F90stats_clubb_utilities.F90stats_variables.F90stats_zm_module.F90advance_clubb_core_module.F90de3c925f59bcfd893d04eb2855548136a17e351e1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comThese changes add the new fourth-order moment variables wp2up2 and wp2vp2 to the CLUBB code. This requires a new function in pdf_closure_module since they must be calculated separately with a new formula, and they are fed through into advance_wp2_wp3 for use with the pr_dfsn subroutine. They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING. The new variables are also added to pyplotgen as part of VariableGroupWs.py where wp4 is found. See #920. 2021-05-11 08:33:03 -0500de3c925f59bcfd893d04eb2855548136a17e351eThese changes add the new fourth-order moment variables wp2up2 and wp2vp2 to the CLUBB code. This requires a new function in pdf_closure_module since they must be calculated separately with a new formula, and they are fed through into advance_wp2_wp3 for use with the pr_dfsn subroutine. They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING.editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90editstats_variables.F90editpdf_closure_module.F90editstats_zm_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F903e4c7b2d0ba9402c006006c3743bcb9ed918ad4a1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comPutting the wp3_pr_turb formulation back to its d(rho*wp2*em)/dz form. This would be a BIT_CHANGING commit since it would change the answers for the pr_turb term. However once this branch is merged into the master branch, results should be bit-for-bit since this term was only modified in the alternate branch. See #920. 2021-05-11 08:33:03 -05003e4c7b2d0ba9402c006006c3743bcb9ed918ad4aPutting the wp3_pr_turb formulation back to its d(rho*wp2*em)/dz form. This would be a BIT_CHANGING commit since it would change the answers for the pr_turb term. However once this branch is merged into the master branch, results should be bit-for-bit since this term was only modified in the alternate branch.editadvance_wp2_wp3_module.F90stats_type_utilities.F90interpolation.F90advance_clubb_core_module.F90calc_pressure.F90advance_windm_edsclrm_module.F90advance_helper_module.F903c6fc8de1942c935d48433c37c2250ba655681e51620766665000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@uwm.eduAdded intent comments for the following files: advance_clubb_core_module, advance_helper_module, and advance_windm_edsclrm_module. These changes are BFB. For ticket #924. 2021-05-11 15:57:45 -05003c6fc8de1942c935d48433c37c2250ba655681e5Added intent comments for the following files:editstats_type_utilities.F90editinterpolation.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editcalc_pressure.F90editadvance_windm_edsclrm_module.F90advance_clubb_core_module.F90pdf_closure_module.F900799b154b8dd0feb9ebe8189be0f004b142d08a31620868004000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comRemoving "if" statement around calculation of wp4 in pdf_closure_module.F90 and the same "if" statement around some further manipulation of wp4 in advance_clubb_core. Results are bit-for-bit with this change, since normally all cases calculate wp4 anyway since the "if" condition was always satisfied in normal runs (but not, for example, in some tuning runs). This was done because the new wp3_pr_dfsn term needs wp4 in its current formulation so it needs to always be calculated. See #920. 2021-05-12 20:06:44 -05000799b154b8dd0feb9ebe8189be0f004b142d08a3Removing "if" statement around calculation of wp4 in pdf_closure_module.F90 and the same "if" statement around some further manipulation of wp4 in advance_clubb_core. Results are bit-for-bit with this change, since normally all cases calculate wp4 anyway since the "if" condition was always satisfied in normal runs (but not, for example, in some tuning runs). This was done because the new wp3_pr_dfsn term needs wp4 in its current formulation so it needs to always be calculated.editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F904637d2f68f4d5b3fa73a677f17e83669b2d363341620911586000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comRemoving some "use" statement variables from advance_clubb_core, since they are no longer used here but are now used in mixing_length.F90. See #909. 2021-05-13 08:13:06 -05004637d2f68f4d5b3fa73a677f17e83669b2d36334Removing some "use" statement variables from advance_clubb_core, since they are no longer used here but are now used in mixing_length.F90.editadvance_clubb_core_module.F90advance_helper_module.F904856129fd79896091b3eecfdcdaab73c812e607e1620921894000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixed comment regarding wp3 splatting term. 2021-05-13 11:04:54 -05004856129fd79896091b3eecfdcdaab73c812e607eFixed comment regarding wp3 splatting term.editadvance_helper_module.F90advance_wp2_wp3_module.F90clip_explicit.F909833dff319c94c1908ae15e112a800a3587f5df31621706433000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments. For file advance_wp2_wp3_module.F90. Results are confirmed to be BFB. For ticket #924. 2021-05-22 13:00:33 -05009833dff319c94c1908ae15e112a800a3587f5df3Added intent comments.editadvance_wp2_wp3_module.F90editclip_explicit.F90pos_definite_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F90lapack_wrap.F906559732d33be2ec8f4ebc58a5ec029d4549ccc351621710963000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments. For the file advance_xm_wpxp_module.F90. I also changed the order of arguments in certain arugment lists to conform to the coding standard. Changes confirmed to be BFB. For ticket #924. 2021-05-22 14:16:03 -05006559732d33be2ec8f4ebc58a5ec029d4549ccc35Added intent comments.editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90editpos_definite_module.F90editlapack_wrap.F90advance_xp2_xpyp_module.F90advance_helper_module.F90d774cff18029de5cc9943c8ea83f4aded41df5b71621713185000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments for advance_xp2_xpyp_module.F90. Additionally, I made changes to certain argument lists to better reflect the coding standard. Changed confirmed to be BFB. For ticket #924. 2021-05-22 14:53:05 -0500d774cff18029de5cc9943c8ea83f4aded41df5b7Added intent comments for advance_xp2_xpyp_module.F90.editadvance_helper_module.F90editadvance_xp2_xpyp_module.F90clip_explicit.F907e0741b435d5318010ea92055b2329e08dba34181621951468000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comMakes surface clipping of wp3 consistent with clipping aloft, per #921. This is BIT_CHANGING since it affects how clipping is applied near the surface. 2021-05-25 09:04:28 -05007e0741b435d5318010ea92055b2329e08dba3418Makes surface clipping of wp3 consistent with clipping aloft, per #921. This is BIT_CHANGING since it affects how clipping is applied near the surface.editclip_explicit.F90clip_explicit.F90dbe9250e6217d60ef45b38553618402e151d939d1621951468000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comDeleting comments around the old "magic number" for the near-surface clipping. See #921. 2021-05-25 09:04:28 -0500dbe9250e6217d60ef45b38553618402e151d939dDeleting comments around the old "magic number" for the near-surface clipping.editclip_explicit.F90parameters_tunable.F90332f11bd30bb9aaf57f218d7fe3769e2cc2016701622231456000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing fortran standards violation causing compiler errors with nvfortran. See larson-group/clubb#900 and larson-group/clubb#928. 2021-05-28 14:50:56 -0500332f11bd30bb9aaf57f218d7fe3769e2cc201670Fixing fortran standards violation causing compiler errors with nvfortran. See larson-group/clubb#900 and larson-group/clubb#928.editparameters_tunable.F90parameters_tunable.F90new_hybrid_pdf_main.F90advance_helper_module.F90242a46454b543774c56a2c6b15b74b86eaf5b5bc1622648527000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged some elements of clubb to allow for better script execution 2021-06-02 10:42:07 -0500242a46454b543774c56a2c6b15b74b86eaf5b5bcChanged some elements of clubb to allow for better script executioneditnew_hybrid_pdf_main.F90editparameters_tunable.F90editadvance_helper_module.F90advance_helper_module.F90153d245615688f92096d7ef460fb65d04f97571e1622651931000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed clubb not compiling 2021-06-02 11:38:51 -0500153d245615688f92096d7ef460fb65d04f97571eFixed clubb not compilingeditadvance_helper_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90clip_explicit.F90stats_type_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90new_pdf_main.F90mono_flux_limiter.F90advance_helper_module.F90advance_wp2_wp3_module.F90new_tsdadg_pdf.F90mixing_length.F90advance_xp2_xpyp_module.F90LY93_pdf.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90calc_pressure.F90diffusion.F90numerical_check.F90pos_definite_module.F90parameters_tunable.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_xp3_module.F90advance_clubb_core_module.F90mean_adv.F90fill_holes.F90stats_clubb_utilities.F90fdcdbc1e4834f13714c9d2a4464cd02dc410b0321622741937000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through the arg list where need only in the CLUBB_core dir. Note, that since some of the functions/subroutines in CLUBB_core are used elsewhere throughout clubb, other parts of clubb such as a file in SILHS, and a few in the outer layer of the source folder needed to be updated in order to reflect the changes. However, everything outside of the CLUBB_core directory still uses use statements in order to use gr from grid class. For ticket #886. All changes are confirmed BFB identical. 2021-06-03 12:38:57 -0500fdcdbc1e4834f13714c9d2a4464cd02dc410b032Feeding gr through the arg list where need only in the CLUBB_core dir.editstats_clubb_utilities.F90editmono_flux_limiter.F90editadvance_wp2_wp3_module.F90editnew_pdf.F90editpdf_closure_module.F90editnumerical_check.F90editsponge_layer_damping.F90editadvance_windm_edsclrm_module.F90editnew_hybrid_pdf_main.F90editturbulent_adv_pdf.F90editadvance_xm_wpxp_module.F90editadvance_xp3_module.F90editadg1_adg2_3d_luhar_pdf.F90editparameters_tunable.F90editstats_type_utilities.F90editclubb_api_module.F90editadvance_helper_module.F90editsetup_clubb_pdf_params.F90editSkx_module.F90editLY93_pdf.F90editdiffusion.F90editnew_tsdadg_pdf.F90editnew_pdf_main.F90editadvance_xp2_xpyp_module.F90editmean_adv.F90editmixing_length.F90editclip_explicit.F90editfill_holes.F90editcalc_pressure.F90editpos_definite_module.F90editadvance_clubb_core_module.F90latin_hypercube_driver_module.F90b8be2708ee69c2ba48379def5c0cb16c852f36111622741937000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through the arg list where need only in the CLUBB_core dir. Note, that since some of the functions/subroutines in CLUBB_core are used elsewhere throughout clubb, other parts of clubb such as a file in SILHS, and a few in the outer layer of the source folder needed to be updated in order to reflect the changes. However, everything outside of the CLUBB_core directory still uses use statements in order to use gr from grid class. For ticket #886. All changes are confirmed BFB identical. 2021-06-03 12:38:57 -0500b8be2708ee69c2ba48379def5c0cb16c852f3611Feeding gr through the arg list where need only in the CLUBB_core dir.editlatin_hypercube_driver_module.F90clubb_api_module.F900b4086681549ba1ade7cd159f63992e231de132b1622745453000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReverted changes to clubb_api. For #886 2021-06-03 13:37:33 -05000b4086681549ba1ade7cd159f63992e231de132bReverted changes to clubb_api. For #886editclubb_api_module.F90advance_xm_wpxp_module.F90clip_explicit.F90clubb_api_module.F90numerical_check.F90new_pdf.F90advance_windm_edsclrm_module.F90new_pdf_main.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90LY93_pdf.F90fill_holes.F90Skx_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90ac4315a4656171d60e7612e105a31aa2bf1086871622821498000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReplacing use gr statements with feeding gr throught the arg list. This commit is for slight improvement to the script in order to better adhere to the coding standard. For ticket #886. Results confirmed to be BFB identical. 2021-06-04 10:44:58 -0500ac4315a4656171d60e7612e105a31aa2bf108687Replacing use gr statements with feeding gr throught the arg list.editadvance_helper_module.F90editadvance_windm_edsclrm_module.F90editnew_pdf_main.F90editadvance_xp3_module.F90editadvance_xm_wpxp_module.F90editSkx_module.F90editadvance_wp2_wp3_module.F90editmixing_length.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editclip_explicit.F90editadg1_adg2_3d_luhar_pdf.F90editLY93_pdf.F90editclubb_api_module.F90editmono_flux_limiter.F90editnew_pdf.F90editnumerical_check.F90editpdf_closure_module.F90editfill_holes.F90advance_xm_wpxp_module.F90clip_explicit.F90Nc_Ncn_eqns.F90calc_roots.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mixing_length.F90advance_wp2_wp3_module.F90pdf_utilities.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90Skx_module.F90calc_pressure.F90index_mapping.F90clip_semi_implicit.F90numerical_check.F90pos_definite_module.F90output_netcdf.F90stats_lh_sfc_module.F90hydromet_pdf_parameter_module.F90saturation.F90advance_xp3_module.F90stats_zt_module.F90mean_adv.F90sigma_sqd_w_module.F90stats_sfc_module.F90stats_zm_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90stats_lh_zt_module.F90input_reader.F90diagnose_correlations_module.F90stats_type_utilities.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90new_hybrid_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90precipitation_fraction.F90diffusion.F90endian.F90pdf_parameter_module.F90parameters_tunable.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90stats_clubb_utilities.F90interpolation.F90T_in_K_module.F90sfc_varnce_module.F90b2e07aedb378d4a517568df6fd3bad22c525cb101623083951000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding proper indentation to needed files. The purpose of this commit is to make the indentation uniform across clubb in order to make script execution easier for replacing gr occurances across clubb. Related to ticket #886. Results are BFB identical. 2021-06-07 11:39:11 -0500b2e07aedb378d4a517568df6fd3bad22c525cb10Adding proper indentation to needed files.editdiagnose_correlations_module.F90editsetup_clubb_pdf_params.F90editmono_flux_limiter.F90editT_in_K_module.F90editpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editmatrix_operations.F90editfile_functions.F90editsigma_sqd_w_module.F90editnew_pdf.F90editoutput_grads.F90editstats_rad_zm_module.F90editadvance_xm_wpxp_module.F90editstats_clubb_utilities.F90editstats_rad_zt_module.F90editclip_explicit.F90editnew_pdf_main.F90editadg1_adg2_3d_luhar_pdf.F90editindex_mapping.F90editLY93_pdf.F90editgrid_class.F90editstats_lh_zt_module.F90editcalc_roots.F90editcalc_pressure.F90editnumerical_check.F90editsponge_layer_damping.F90editprecipitation_fraction.F90editturbulent_adv_pdf.F90editparameters_model.F90editnew_tsdadg_pdf.F90edithydromet_pdf_parameter_module.F90editpos_definite_module.F90editmixing_length.F90editinterpolation.F90editstats_lh_sfc_module.F90editadvance_wp2_wp3_module.F90editclip_semi_implicit.F90editpdf_utilities.F90editNc_Ncn_eqns.F90editnew_hybrid_pdf.F90editpdf_parameter_module.F90editadvance_helper_module.F90editstats_type_utilities.F90editnew_hybrid_pdf_main.F90editclubb_api_module.F90editlapack_wrap.F90editadvance_clubb_core_module.F90editstats_zt_module.F90editcalendar.F90editdiffusion.F90editstats_sfc_module.F90editsaturation.F90editendian.F90editmean_adv.F90editoutput_netcdf.F90editinput_reader.F90editsfc_varnce_module.F90editSkx_module.F90editfill_holes.F90editparameters_tunable.F90editadvance_windm_edsclrm_module.F90editcorr_varnce_module.F90editadvance_xp3_module.F90editstats_zm_module.F90clip_explicit.F90advance_xm_wpxp_module.F90Nc_Ncn_eqns.F90calc_roots.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90new_pdf_main.F90advance_helper_module.F90pdf_utilities.F90advance_wp2_wp3_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90Skx_module.F90calc_pressure.F90index_mapping.F90clip_semi_implicit.F90numerical_check.F90pos_definite_module.F90output_netcdf.F90stats_lh_sfc_module.F90hydromet_pdf_parameter_module.F90saturation.F90advance_xp3_module.F90mean_adv.F90stats_zt_module.F90stats_sfc_module.F90sigma_sqd_w_module.F90stats_zm_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90input_reader.F90stats_lh_zt_module.F90diagnose_correlations_module.F90stats_type_utilities.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90new_hybrid_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90precipitation_fraction.F90diffusion.F90endian.F90parameters_tunable.F90pdf_parameter_module.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90interpolation.F90stats_clubb_utilities.F90T_in_K_module.F90sfc_varnce_module.F90682a70d581028bc852664c1bae4c9691d120f87d1623087742000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing spacing issue on blank lines. #886 2021-06-07 12:42:22 -0500682a70d581028bc852664c1bae4c9691d120f87dFixing spacing issue on blank lines. #886edithydromet_pdf_parameter_module.F90editfile_functions.F90editNc_Ncn_eqns.F90editcorr_varnce_module.F90editfill_holes.F90editclip_explicit.F90editoutput_grads.F90editpdf_utilities.F90editturbulent_adv_pdf.F90editadvance_windm_edsclrm_module.F90editnew_hybrid_pdf_main.F90editendian.F90editLY93_pdf.F90editmatrix_operations.F90editmono_flux_limiter.F90editdiagnose_correlations_module.F90editstats_zm_module.F90editnumerical_check.F90editstats_rad_zm_module.F90editcalc_pressure.F90editadvance_helper_module.F90editnew_tsdadg_pdf.F90editSkx_module.F90editnew_pdf_main.F90editsaturation.F90editparameters_tunable.F90editsfc_varnce_module.F90editadvance_xp3_module.F90editpos_definite_module.F90editadvance_wp2_wp3_module.F90editstats_type_utilities.F90editclubb_api_module.F90editinterpolation.F90editstats_sfc_module.F90editnew_hybrid_pdf.F90editmean_adv.F90editoutput_netcdf.F90editadg1_adg2_3d_luhar_pdf.F90editadvance_clubb_core_module.F90editindex_mapping.F90editinput_reader.F90editstats_clubb_utilities.F90editnew_pdf.F90editadvance_xp2_xpyp_module.F90editclip_semi_implicit.F90editgrid_class.F90editT_in_K_module.F90editprecipitation_fraction.F90editdiffusion.F90editpdf_parameter_module.F90editstats_lh_zt_module.F90editsponge_layer_damping.F90editstats_rad_zt_module.F90editcalc_roots.F90editstats_zt_module.F90editstats_lh_sfc_module.F90editadvance_xm_wpxp_module.F90editcalendar.F90editsetup_clubb_pdf_params.F90editlapack_wrap.F90editparameters_model.F90editmixing_length.F90editsigma_sqd_w_module.F90editpdf_closure_module.F90diffusion.F90advance_xm_wpxp_module.F90clubb_api_module.F90numerical_check.F90output_netcdf.F90diagnose_correlations_module.F90grid_class.F90sponge_layer_damping.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90output_grads.F90advance_clubb_core_module.F90lapack_wrap.F90stats_clubb_utilities.F90interpolation.F90corr_varnce_module.F90matrix_operations.F9068a2ab4afb0a6d86b78f100acfac6052fc6130961623091143000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed comment changes. #886 2021-06-07 13:39:03 -050068a2ab4afb0a6d86b78f100acfac6052fc613096Fixed comment changes. #886editdiagnose_correlations_module.F90editlapack_wrap.F90editstats_clubb_utilities.F90editgrid_class.F90editnumerical_check.F90editadvance_wp2_wp3_module.F90editcorr_varnce_module.F90editadvance_xm_wpxp_module.F90editclubb_api_module.F90editmatrix_operations.F90editoutput_grads.F90editadvance_xp2_xpyp_module.F90editinterpolation.F90editsponge_layer_damping.F90editadvance_clubb_core_module.F90editdiffusion.F90editoutput_netcdf.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90new_pdf.F90setup_clubb_pdf_params.F90advance_helper_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90fill_holes.F90pdf_closure_module.F90stats_clubb_utilities.F9024d2d6e02bddf69942f70e2e54d1955d9e52a1841623091511000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed incorrect spacing on use 2021-06-07 13:45:11 -050024d2d6e02bddf69942f70e2e54d1955d9e52a184Fixed incorrect spacing on useeditadvance_clubb_core_module.F90editclubb_api_module.F90editstats_clubb_utilities.F90editadvance_xm_wpxp_module.F90editpdf_closure_module.F90editdiffusion.F90editfill_holes.F90editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90editstats_zt_module.F90editmixing_length.F90editnew_pdf.F90editnew_hybrid_pdf.F90editsetup_clubb_pdf_params.F90editfile_functions.F90diffusion.F90advance_xm_wpxp_module.F90clubb_api_module.F90setup_clubb_pdf_params.F90new_pdf.F90advance_helper_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90fill_holes.F90pdf_closure_module.F90stats_clubb_utilities.F905427e211e24f065ce2c7f82da5b8f69e33e35b8d1623092331000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRevert "Fixed incorrect spacing on use" This reverts commit 76d990d7b5c9eff30a359fbc4709d9278dc2eb2b. 2021-06-07 13:58:51 -05005427e211e24f065ce2c7f82da5b8f69e33e35b8dRevert "Fixed incorrect spacing on use"editnew_hybrid_pdf.F90editsetup_clubb_pdf_params.F90editpdf_closure_module.F90editfill_holes.F90editdiffusion.F90editadvance_clubb_core_module.F90editstats_zt_module.F90editadvance_xm_wpxp_module.F90editmixing_length.F90editnew_pdf.F90editclubb_api_module.F90editadvance_helper_module.F90editstats_clubb_utilities.F90editadvance_xp2_xpyp_module.F90editfile_functions.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F90c3e921120e4a8ecb5da2345ee56e32dd582908481623092618000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing 2021-06-07 14:03:38 -0500c3e921120e4a8ecb5da2345ee56e32dd58290848Fixed spacingeditfile_functions.F90editnew_hybrid_pdf.F90editnew_pdf.F90editmixing_length.F90editstats_clubb_utilities.F90editadvance_helper_module.F90editclubb_api_module.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editdiffusion.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F902e02d7f843134d047e78118076171e3e13babb3d1623094110000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing going too far 2021-06-07 14:28:30 -05002e02d7f843134d047e78118076171e3e13babb3dFixed spacing going too fareditpdf_closure_module.F90editstats_clubb_utilities.F90editnew_hybrid_pdf.F90editmixing_length.F90editnew_pdf.F90editdiffusion.F90editfile_functions.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90setup_clubb_pdf_params.F90new_pdf.F90advance_helper_module.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90pdf_closure_module.F90stats_clubb_utilities.F90T_in_K_module.F90d3b117d1c334e9f97273a15eac2f3f5527d6b0001623095035000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed comments being pushed over 2021-06-07 14:43:55 -0500d3b117d1c334e9f97273a15eac2f3f5527d6b000Fixed comments being pushed overeditadvance_xp2_xpyp_module.F90editdiffusion.F90editnew_hybrid_pdf.F90editpdf_closure_module.F90editT_in_K_module.F90editstats_zt_module.F90editfile_functions.F90editsetup_clubb_pdf_params.F90editadvance_helper_module.F90editnew_pdf.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F90fe3ae735b4f499d039623a5ee0d772e084f6b8ac1623160082000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed not all variables being indented properly 2021-06-08 08:48:02 -0500fe3ae735b4f499d039623a5ee0d772e084f6b8acFixed not all variables being indented properlyeditfile_functions.F90editnew_pdf.F90editpdf_closure_module.F90editadvance_helper_module.F90editmixing_length.F90editnew_hybrid_pdf.F90editclubb_api_module.F90editdiffusion.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90a593cc9f999ce4cac08cfbe08b594786ce8dc4231623160508000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed indentation going beyond variables 2021-06-08 08:55:08 -0500a593cc9f999ce4cac08cfbe08b594786ce8dc423Fixed indentation going beyond variableseditadvance_clubb_core_module.F90editdiffusion.F90editnew_hybrid_pdf.F90editfile_functions.F90editstats_clubb_utilities.F90editpdf_closure_module.F90editmixing_length.F90editnew_pdf.F90file_functions.F909b945635dc114c5d74ed06a38fe5106b3e1be3661623161215000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed file_functions indentation being off 2021-06-08 09:06:55 -05009b945635dc114c5d74ed06a38fe5106b3e1be366Fixed file_functions indentation being offeditfile_functions.F90mixing_length.F90diffusion.F90clubb_api_module.F90new_hybrid_pdf.F90pdf_closure_module.F90new_pdf.F90advance_helper_module.F901e40b9d5b6246903ec09aefb1bba47f234f1e42e1623162163000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed indentation on operations being wrong 2021-06-08 09:22:43 -05001e40b9d5b6246903ec09aefb1bba47f234f1e42eFixed indentation on operations being wrongeditpdf_closure_module.F90editadvance_helper_module.F90editnew_pdf.F90editclubb_api_module.F90editmixing_length.F90editdiffusion.F90editnew_hybrid_pdf.F90new_pdf.F90new_hybrid_pdf.F90e9a76e155c9e8c66eb17e0f27ffc04771b0d82d11623162859000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReverted incorrect changes to new_pdf and new_hybrid_pdf 2021-06-08 09:34:19 -0500e9a76e155c9e8c66eb17e0f27ffc04771b0d82d1Reverted incorrect changes to new_pdf and new_hybrid_pdfeditnew_hybrid_pdf.F90editnew_pdf.F90clip_explicit.F90advance_xm_wpxp_module.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90new_pdf_main.F90advance_helper_module.F90mixing_length.F90advance_wp2_wp3_module.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90Skx_module.F90calc_pressure.F90clip_semi_implicit.F90numerical_check.F90pos_definite_module.F90output_netcdf.F90stats_lh_sfc_module.F90saturation.F90advance_xp3_module.F90mean_adv.F90stats_sfc_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90input_reader.F90stats_lh_zt_module.F90stats_type_utilities.F90diagnose_correlations_module.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90diffusion.F90endian.F90parameters_tunable.F90sponge_layer_damping.F90new_pdf.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90interpolation.F90stats_clubb_utilities.F90T_in_K_module.F901651f274501bfb73675497070e4d5641d04411fa1623168054000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing issue when adding in gr. BFB identical. For #886. 2021-06-08 11:00:54 -05001651f274501bfb73675497070e4d5641d04411faFixed spacing issue when adding in gr. BFB identical. For #886.editnew_tsdadg_pdf.F90editclip_explicit.F90editSkx_module.F90editadvance_windm_edsclrm_module.F90editstats_lh_sfc_module.F90editoutput_grads.F90editLY93_pdf.F90editinterpolation.F90editstats_rad_zm_module.F90editstats_type_utilities.F90editstats_sfc_module.F90editnew_hybrid_pdf_main.F90editparameters_model.F90editclip_semi_implicit.F90editadvance_xm_wpxp_module.F90editcalendar.F90editadvance_helper_module.F90editfile_functions.F90editsetup_clubb_pdf_params.F90editparameters_tunable.F90editnew_pdf_main.F90editturbulent_adv_pdf.F90editpdf_closure_module.F90editpos_definite_module.F90editmixing_length.F90editfill_holes.F90editdiffusion.F90editmono_flux_limiter.F90editdiagnose_correlations_module.F90editsponge_layer_damping.F90editadvance_clubb_core_module.F90editmatrix_operations.F90editadvance_xp2_xpyp_module.F90editgrid_class.F90editoutput_netcdf.F90editT_in_K_module.F90editcorr_varnce_module.F90editclubb_api_module.F90editadg1_adg2_3d_luhar_pdf.F90editsaturation.F90editinput_reader.F90editstats_lh_zt_module.F90editnew_pdf.F90editadvance_xp3_module.F90editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90editcalc_pressure.F90editlapack_wrap.F90editmean_adv.F90editendian.F90editnumerical_check.F90latin_hypercube_driver_module.F90e79fc26972ad2e909bf545778f1b42bbc2780b321623168054000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing issue when adding in gr. BFB identical. For #886. 2021-06-08 11:00:54 -0500e79fc26972ad2e909bf545778f1b42bbc2780b32Fixed spacing issue when adding in gr. BFB identical. For #886.editlatin_hypercube_driver_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90pos_definite_module.F90grid_class.F90setup_clubb_pdf_params.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90calc_pressure.F907bda97ac8ad514e02e6e6ad3e2562d52d5c071421623708447000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving gr as a module variable from grid_class. gr is now a module variable in clubb_api_module. This was done in order to not break host models. Additonally, gr is now being fed through the arg list of all functions and subroutines that use gr within grid_class. Results are BFB identical. For ticket #886. 2021-06-14 17:07:27 -05007bda97ac8ad514e02e6e6ad3e2562d52d5c07142Removing gr as a module variable from grid_class.editclubb_api_module.F90editadvance_helper_module.F90editgrid_class.F90editadvance_xp3_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editpos_definite_module.F90editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90editadvance_clubb_core_module.F90editcalc_pressure.F90editsetup_clubb_pdf_params.F90latin_hypercube_driver_module.F90fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ec1623708447000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving gr as a module variable from grid_class. gr is now a module variable in clubb_api_module. This was done in order to not break host models. Additonally, gr is now being fed through the arg list of all functions and subroutines that use gr within grid_class. Results are BFB identical. For ticket #886. 2021-06-14 17:07:27 -0500fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ecRemoving gr as a module variable from grid_class.editlatin_hypercube_driver_module.F90stats_zm_module.F908601df2406dafdfdf0d57a77067b9553dc19d6e91623854429000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format. This is BIT_CHANGING since it will affect the name of the upwp_tp variable in the X_zm.nc netcdf file, but it will not change results. 2021-06-16 09:40:29 -05008601df2406dafdfdf0d57a77067b9553dc19d6e9Fixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format.editstats_zm_module.F90stats_sfc_module.F901978bbce511f3b7a9631d61a8c1028bf2072bfbf1623855537000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing a typo from an earlier commit. See comments in this other commit where a similar typo was fixed: https://github.com/larson-group/clubb/commit/a4f5f736cb16168f40fdc01e454930ffa05fbb4d. 2021-06-16 09:58:57 -05001978bbce511f3b7a9631d61a8c1028bf2072bfbfFixing a typo from an earlier commit.editstats_sfc_module.F90clubb_api_module.F9009858d30f6551ef8ad290e02deecf27b321befd81624289253000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through arg list for functions outside of CLUBB_core. Gr has been removed as a moduler variable from clubb_api_module and has been moved to clubb_driver as the top level moduler variable. There is only one instance where a use clubb_driver gr statement is used and that is within clubb_tuner. Results are BFB identical. For ticket #886. 2021-06-21 10:27:33 -050009858d30f6551ef8ad290e02deecf27b321befd8Feeding gr through arg list for functions outside of CLUBB_core.editclubb_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F9024bc6821388ce95985f023733ada790ec18437781624289253000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through arg list for functions outside of CLUBB_core. Gr has been removed as a moduler variable from clubb_api_module and has been moved to clubb_driver as the top level moduler variable. There is only one instance where a use clubb_driver gr statement is used and that is within clubb_tuner. Results are BFB identical. For ticket #886. 2021-06-21 10:27:33 -050024bc6821388ce95985f023733ada790ec1843778Feeding gr through arg list for functions outside of CLUBB_core.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_clubb_core_module.F90grid_class.F90clubb_api_module.F907c6ca69bbc46a81d7689d02bc7e50835713e1d311624564146000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduMoving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB. 2021-06-24 14:49:06 -05007c6ca69bbc46a81d7689d02bc7e50835713e1d31Moving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB.editclubb_api_module.F90editadvance_clubb_core_module.F90editgrid_class.F90clubb_api_module.F905127df88dd9725018f5dbf4097192088202d7da91624641544000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduThe purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. Please ignore this commit unless everything breaks, in which case this is the reason why everything is broken. 2021-06-25 12:19:04 -05005127df88dd9725018f5dbf4097192088202d7da9The purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. Please ignore this commit unless everything breaks, in which case this is the reason why everything is broken.editclubb_api_module.F90error_code.F90a147663e583384f9f1a925770aecadc6225554d51625077120000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd error header for CLUBB in CAM 2021-06-30 13:18:40 -0500a147663e583384f9f1a925770aecadc6225554d5Add error header for CLUBB in CAMediterror_code.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90diffusion.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90advance_helper_module.F90cd3da20176118cbba413ee8f49edca31bce4bbc41625149291000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing the ordering of gr in the clubb_api arg list for affected subroutines. Additionally, this commit removes the clubb code standard violation of exceeding more the 100 characters per line. Lastly, the grid typing is being added to clubb_api_module as a public variable so that the host models have access to the type without having to bypass the api For ticket #886. 2021-07-01 09:21:31 -0500cd3da20176118cbba413ee8f49edca31bce4bbc4Fixing the ordering of gr in the clubb_api arg list for affected subroutines.editpdf_closure_module.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editclubb_api_module.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editmixing_length.F90editadvance_windm_edsclrm_module.F90editdiffusion.F90mixing_length.F90advance_windm_edsclrm_module.F90fd4054ccb17b0f17e0f1b05021ef24866c9f99521625160233000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard violations 2021-07-01 12:23:53 -0500fd4054ccb17b0f17e0f1b05021ef24866c9f9952Fixing coding standard violationseditadvance_windm_edsclrm_module.F90editmixing_length.F90advance_clubb_core_module.F90479e56bfbcbe71564edb1b1c2b123c95e740a7171625696754000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproving error messages in setup_clubb_core. larson-group/e3sm#38 2021-07-07 17:25:54 -0500479e56bfbcbe71564edb1b1c2b123c95e740a717Improving error messages in setup_clubb_core. larson-group/e3sm#38editadvance_clubb_core_module.F90precipitation_fraction.F90clubb_api_module.F90clip_explicit.F90advance_xm_wpxp_module.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_rad_zt_module.F90stats_rad_zm_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F900295787fe7c55013beb522ef0d58f0d429b03a901626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFeeding stats variables through the argument lists of needed subroutines. The purpose of this commit is to prep clubb for having all stats variables be fed through the argument list in the entirety of clubb and host models where needed. This is for ticket #733. Results have been confirmed to be BFB identical. 2021-07-22 12:07:26 -05000295787fe7c55013beb522ef0d58f0d429b03a90Feeding stats variables through the argument lists of needed subroutines.editmono_flux_limiter.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editfill_holes.F90editclubb_api_module.F90editadvance_windm_edsclrm_module.F90editstats_clubb_utilities.F90editstats_sfc_module.F90editstats_zt_module.F90editstats_rad_zt_module.F90editstats_zm_module.F90editclip_explicit.F90editsetup_clubb_pdf_params.F90editprecipitation_fraction.F90editstats_rad_zm_module.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editadvance_xp3_module.F90editadvance_xm_wpxp_module.F90precipitation_fraction.F90clubb_api_module.F90advance_xm_wpxp_module.F90clip_explicit.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_zm_module.F90stats_clubb_utilities.F906eef92139f3e787d4c6b2fe9759ab350e749be9f1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing spacing issues along with placing the stats varibales on their own lines. Additionally, this commit relabels arg list intent along with the intent of stats vars. Stats variables are still not in the correct spot in the arg list as per the standard, however, they are on their own line where they are correctly labeled. For ticket #733. Results are confirmed BFB identical. 2021-07-22 12:07:26 -05006eef92139f3e787d4c6b2fe9759ab350e749be9fFixing spacing issues along with placing the stats varibales on their own lines.editadvance_wp2_wp3_module.F90editstats_zm_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp3_module.F90editsetup_clubb_pdf_params.F90editstats_rad_zm_module.F90editfill_holes.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editprecipitation_fraction.F90editadvance_xm_wpxp_module.F90editstats_rad_zt_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90editadvance_helper_module.F90editstats_sfc_module.F90editmono_flux_limiter.F90editadvance_xp2_xpyp_module.F90editclip_explicit.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90stats_lh_zt_module.F90stats_lh_sfc_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90d5fbfd0ad95031e40271cc6c706122f1565d29241626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comChanging more subroutines to include stats vars in their arg lists. There were a few subroutines that were not detected on the first script for subroutines that would need to be changed. This commit picks up on those subroutines and correctly makes the change. Additionally, this commit also makes the stats vars show up in the same spot consistantly throughout all affected subroutines. For ticket #733. Results are confirmed BFB identical. 2021-07-22 12:07:26 -0500d5fbfd0ad95031e40271cc6c706122f1565d2924Changing more subroutines to include stats vars in their arg lists.editsetup_clubb_pdf_params.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editstats_lh_sfc_module.F90editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90editstats_lh_zt_module.F90editmixing_length.F90stats_clubb_utilities.F90clubb_api_module.F9077d0af2a8bf800247ce6384510b37642d5eb147c1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing incorrect subroutine arg list 2021-07-22 12:07:26 -050077d0af2a8bf800247ce6384510b37642d5eb147cFixing incorrect subroutine arg listeditclubb_api_module.F90editstats_clubb_utilities.F90stats_clubb_utilities.F90clubb_api_module.F90d13ff64ce37dfe05703c7f5feca642a0d79294611626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing host models not compiling. Host models now compile. For ticket #733 Results remain BFB identical. 2021-07-22 12:07:26 -0500d13ff64ce37dfe05703c7f5feca642a0d7929461Fixing host models not compiling.editclubb_api_module.F90editstats_clubb_utilities.F90precipitation_fraction.F90clubb_api_module.F90advance_xm_wpxp_module.F90clip_explicit.F90stats_lh_zt_module.F90stats_lh_sfc_module.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F90ccebf94a0df8e2ea3c8aed4a2f5310abcf23976b1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing argument list so that way the coding standard is upheld. For ticket #733. Results remain BFB identical. 2021-07-22 12:07:26 -0500ccebf94a0df8e2ea3c8aed4a2f5310abcf23976bFixing argument list so that way the coding standard is upheld.editstats_lh_zt_module.F90editadvance_wp2_wp3_module.F90editmixing_length.F90editstats_lh_sfc_module.F90editmono_flux_limiter.F90editstats_clubb_utilities.F90editstats_rad_zm_module.F90editprecipitation_fraction.F90editsetup_clubb_pdf_params.F90editstats_zm_module.F90editfill_holes.F90editadvance_xp3_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editstats_sfc_module.F90editadvance_xm_wpxp_module.F90editclip_explicit.F90editstats_zt_module.F90editstats_rad_zt_module.F90editadvance_xp2_xpyp_module.F90editadvance_windm_edsclrm_module.F90editadvance_helper_module.F90new_hybrid_pdf_main.F903521e3a711eb77add3f4e847ccb466c1a202b91e1627072017000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the name to calc_responder_driver because I thought that calc_responder_var_lev (which it had recently been changed to) wasn't very fitting. 2021-07-23 15:26:57 -05003521e3a711eb77add3f4e847ccb466c1a202b91eI changed the name to calc_responder_driver because I thought thateditnew_hybrid_pdf_main.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90parameter_indices.F90stats_zt_module.F90pdf_closure_module.F90parameters_tunable.F90stats_variables.F90stats_zm_module.F90stats_clubb_utilities.F909804df96e177cde81e75b0c5a8e58b7d7425564a1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comCode changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920. This is BIT_CHANGING, but only because it will introduce some new output variables in the netcdf files. It will not affect results currently since the pressure diffusion coefficient is set to zero. 2021-07-26 13:22:53 -05009804df96e177cde81e75b0c5a8e58b7d7425564aCode changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920.editparameters_tunable.F90editadvance_clubb_core_module.F90editparameter_indices.F90editpdf_closure_module.F90editstats_variables.F90editstats_zm_module.F90editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90advance_wp2_wp3_module.F90c65a56c6e983570429eb26e39c141632068f8c6c1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing comment for the wp2_term_pr_dfsn subroutine. Related to #920. 2021-07-26 13:22:53 -0500c65a56c6e983570429eb26e39c141632068f8c6cFixing comment for the wp2_term_pr_dfsn subroutine. Related to #920.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90467f228ea4cef740a258bb2161503c2cfcfffb211627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920. 2021-07-26 13:22:53 -0500467f228ea4cef740a258bb2161503c2cfcfffb21Updating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F9098f49a6825f2babc94b700d70e39e0539a7cc2541627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comMaking requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920. 2021-07-26 13:22:53 -050098f49a6825f2babc94b700d70e39e0539a7cc254Making requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F904b64520fe5255ba8d66fece5639907f2f6aa61db1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing some comments. 2021-07-26 13:22:53 -05004b64520fe5255ba8d66fece5639907f2f6aa61dbFixing some comments.editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90pdf_closure_module.F90stats_zt_module.F90523614e1b29f4f63efa12eec0e45bb586811122a1627331205000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920. 2021-07-26 15:26:45 -0500523614e1b29f4f63efa12eec0e45bb586811122aCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920.editstats_zt_module.F90editpdf_closure_module.F90stats_variables.F90clubb_api_module.F900a931b874d79ba2f749da6be1c80f9be039388eb1627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -05000a931b874d79ba2f749da6be1c80f9be039388ebMoving the stats variables to module variables of clubb_driver.editclubb_api_module.F90editstats_variables.F90silhs_api_module.F90latin_hypercube_driver_module.F90bad9a3eb391637b1ff6c9df434e237e1088b10df1627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -0500bad9a3eb391637b1ff6c9df434e237e1088b10dfMoving the stats variables to module variables of clubb_driver.editsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F90advance_xp2_xpyp_module.F9082f133b444e8397d161e498331b5cbaefbb1a9921627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -050082f133b444e8397d161e498331b5cbaefbb1a992Fixing coding standard viloation of lines exceeding 100 characters.editadvance_clubb_core_module.F90editsetup_clubb_pdf_params.F90editadvance_xp2_xpyp_module.F90silhs_api_module.F90be45e7398fb94d31cb5e3b967809bc3652bd2a451627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -0500be45e7398fb94d31cb5e3b967809bc3652bd2a45Fixing coding standard viloation of lines exceeding 100 characters.editsilhs_api_module.F90advance_wp2_wp3_module.F90parameters_tunable.F90stats_variables.F90parameter_indices.F90stats_zt_module.F90bd7552a5cd558f1086549641269ef5391cf585b91627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920. This is not set up to change results currently, since the coefficient of the new term is zero, but it is BIT_CHANGING since it will include new output in the netcdf files. Also includes updates to pyplotgen to accommodate the new term. 2021-07-29 12:28:21 -0500bd7552a5cd558f1086549641269ef5391cf585b9Adding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920.editparameters_tunable.F90editstats_variables.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90editparameter_indices.F90advance_wp2_wp3_module.F90parameters_tunable.F90stats_zt_module.F90b8bad9e4a98d18e532dddc063856d55cd1456ab41627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comChanging the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero. Related to #920. 2021-07-29 12:28:21 -0500b8bad9e4a98d18e532dddc063856d55cd1456ab4Changing the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero.editadvance_wp2_wp3_module.F90editstats_zt_module.F90editparameters_tunable.F90setup_clubb_pdf_params.F9034cf74a954230451ecf06007e9b5dd8ead72c8a31627654958000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving l_interp_prescribed_params from setup_clubb_pdf_params. The flag has been removed and so has any code underneat a logic statement involving this statement unless it has multiple flags. The else statement in the if block involving this flag has been set to execute without an if block. For ticket #916 Results are BFB identical. Additionally, complex logic statements with the use of more flags had those flags adjusted and BFB results were also confirmed with these changes. 2021-07-30 09:22:38 -050034cf74a954230451ecf06007e9b5dd8ead72c8a3Removing l_interp_prescribed_params from setup_clubb_pdf_params.editsetup_clubb_pdf_params.F90calendar.F90clip_explicit.F90clubb_api_module.F90input_reader.F90diagnose_correlations_module.F90grid_class.F90setup_clubb_pdf_params.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90stats_rad_zm_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90code_timer_module.F90corr_varnce_module.F90precipitation_fraction.F90clip_semi_implicit.F90numerical_check.F90output_netcdf.F90mt95.f90pdf_parameter_module.F90parameters_tunable.F90sponge_layer_damping.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_zt_module.F90fill_holes.F90stats_zm_module.F90stats_clubb_utilities.F90interpolation.F90sfc_varnce_module.F90matrix_operations.F90e4741e2adf4b6cc29301ba7945131193798c89fa1627927021000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding comments labeling subroutine calls with intent. Goes all the way up until stats_clubb_utils. BFB identical. For ticket #942. 2021-08-02 12:57:01 -0500e4741e2adf4b6cc29301ba7945131193798c89faAdding comments labeling subroutine calls with intent.editmatrix_operations.F90editprecipitation_fraction.F90editcalendar.F90editoutput_grads.F90editoutput_netcdf.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editcorr_varnce_module.F90editpdf_parameter_module.F90editmixing_length.F90editnumerical_check.F90editstats_zm_module.F90editdiagnose_correlations_module.F90editstats_clubb_utilities.F90editcode_timer_module.F90editadg1_adg2_3d_luhar_pdf.F90editadvance_xp2_xpyp_module.F90editgrid_class.F90editstats_rad_zt_module.F90editsetup_clubb_pdf_params.F90editadvance_xp3_module.F90editfill_holes.F90editclip_explicit.F90editinterpolation.F90editsfc_varnce_module.F90editfile_functions.F90editsponge_layer_damping.F90editclubb_api_module.F90editpdf_closure_module.F90editclip_semi_implicit.F90editinput_reader.F90editstats_zt_module.F90editmono_flux_limiter.F90editstats_rad_zm_module.F90editmt95.f90editparameters_tunable.F90output_grads.F90stats_rad_zt_module.F90stats_rad_zm_module.F90stats_lh_zt_module.F90output_netcdf.F90stats_lh_sfc_module.F90stats_type_utilities.F90stats_clubb_utilities.F90fb672a147e82517a40817f2c816018783e1146531628008649000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. All calls to subroutines now have intent comments next to them all the way up through stats_sfc_module. Results are BFB identical. For ticket #942. 2021-08-03 11:37:29 -0500fb672a147e82517a40817f2c816018783e114653Adding intent labels for subroutines throughout clubb.editstats_lh_zt_module.F90editoutput_grads.F90editoutput_netcdf.F90editstats_rad_zt_module.F90editstats_type_utilities.F90editstats_clubb_utilities.F90editstats_rad_zm_module.F90editstats_lh_sfc_module.F90advance_wp2_wp3_module.F90dea9cab76b9e14a4f3139dbeaf18de3ca96526091628009021000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving unnecessary constant from use statement 2021-08-03 11:43:41 -0500dea9cab76b9e14a4f3139dbeaf18de3ca9652609Removing unnecessary constant from use statementeditadvance_wp2_wp3_module.F90parameters_tunable.F90dc17ecf04d73f6aa9fbb48fb7a83cc77b1ad386d1628617949000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_nu_grid_dependent as requested. For ticket #926. Results are BFB identical. 2021-08-10 12:52:29 -0500dc17ecf04d73f6aa9fbb48fb7a83cc77b1ad386dEliminating l_nu_grid_dependent as requested.editparameters_tunable.F90advance_clubb_core_module.F90parameters_tunable.F90c22a22b3ba84044037834f62a458b81b02f637941628620641000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_buoy_mod_Km_zm. For ticket #926 if we use a buoyancy-modified expression for Km_zm. Results are BFB identical. 2021-08-10 13:37:21 -0500c22a22b3ba84044037834f62a458b81b02f63794Eliminating l_use_buoy_mod_Km_zm.editadvance_clubb_core_module.F90editparameters_tunable.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F900e8980b576ec718cf4b7247695ec1f1dc9b70c601628624038000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_iter_xp2_xpyp flag. For ticket #926. Results are BFB identical. 2021-08-10 14:33:58 -05000e8980b576ec718cf4b7247695ec1f1dc9b70c60Eliminating l_iter_xp2_xpyp flag.editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90bafa3df6283a00134563e5b093f72e304e3352ba1628702483000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_apply_rule_to_pdf_params flag. For ticket #926. Results are BFB identical. 2021-08-11 12:21:23 -0500bafa3df6283a00134563e5b093f72e304e3352baEliminating l_apply_rule_to_pdf_params flag.editadvance_clubb_core_module.F90mean_adv.F9080351a9f31586a6da5e46acb59fd423b2d1c09441628703668000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_ub_const_deriv flag. For ticket #926. Results are BFB identical. 2021-08-11 12:41:08 -050080351a9f31586a6da5e46acb59fd423b2d1c0944Eliminating l_ub_const_deriv flag.editmean_adv.F90interpolation.F905861ea0ed9217c2525090a2f50d4158a97da5a931628705685000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_equation_21 flag. For ticket #926. Results are BFB identical 2021-08-11 13:14:45 -05005861ea0ed9217c2525090a2f50d4158a97da5a93Eliminating l_equation_21 flag.editinterpolation.F90advance_wp2_wp3_module.F901725bbe1b3bd91c664ab406db4e94866accbc0cc1628708452000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_wp3_2nd_buoyancy flag. Code surrounding the flag is still present. For ticket #926. Results are BFB identical. 2021-08-11 14:00:52 -05001725bbe1b3bd91c664ab406db4e94866accbc0ccEliminating l_wp3_2nd_buoyancy flag.editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90895a8f6e2d8b44c47b7f4b8a0b439beafa482b8f1628710372000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_refine_grid_in_cloud and l_interactive_refined. For ticket #926. Results are BFB identical. 2021-08-11 14:32:52 -0500895a8f6e2d8b44c47b7f4b8a0b439beafa482b8fEliminating l_refine_grid_in_cloud and l_interactive_refined.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F907cbdaaf3133b7eedf3a9cdd66e1be178a62c3af21628713599000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_experimental_term_pr2 and l_use_vert_avg_winds For ticket #926 Results are BFB identical. 2021-08-11 15:26:39 -05007cbdaaf3133b7eedf3a9cdd66e1be178a62c3af2Eliminating l_use_experimental_term_pr2 and l_use_vert_avg_windseditadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90model_flags.F90a17efb420b3b5c93d2ca5d39e14d36732c3b1a2a1628777541000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_wp3_pr3 flag. For ticket #926. Results are BFB identical. 2021-08-12 09:12:21 -0500a17efb420b3b5c93d2ca5d39e14d36732c3b1a2aEliminating l_use_wp3_pr3 flag.editmodel_flags.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90output_netcdf.F90parameters_tunable.F90model_flags.F90advance_xm_wpxp_module.F90924185803f23f0b081f3719fd41a3396b4753a2a1628781691000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_clip_semi_implicit flag. For ticket #926. This commit is BIT_CHANGING due to how the flag needed to be removed. More details on why this commit is bit changing can be seen on the ticket page. 2021-08-12 10:21:31 -0500924185803f23f0b081f3719fd41a3396b4753a2aEliminating l_clip_semi_implicit flag.editoutput_netcdf.F90editparameters_tunable.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90advance_clubb_core_module.F90numerical_check.F90stats_type_utilities.F9052350475884c0c6da4817a725a99ad5746b017f11628783267000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. Remaining files now have intent comments for subroutines. Additionally, all lines are now less than 100 characters. For ticket #942. Results are BFB identical. 2021-08-12 10:47:47 -050052350475884c0c6da4817a725a99ad5746b017f1Adding intent labels for subroutines throughout clubb.editnumerical_check.F90editadvance_clubb_core_module.F90editstats_type_utilities.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90model_flags.F90clubb_api_module.F90output_netcdf.F90stats_clubb_utilities.F90parameters_tunable.F9051022e222d451e836733546815b8f88995c534fe1628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -050051022e222d451e836733546815b8f88995c534feEliminating l_single_C2_Skw flag.editstats_clubb_utilities.F90editclubb_api_module.F90editadvance_xp2_xpyp_module.F90editparameter_indices.F90editmodel_flags.F90editparameters_tunable.F90editadvance_clubb_core_module.F90editoutput_netcdf.F90silhs_api_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F9035ae5cdc76bf5d0be3bc8e6e8b0fe2b3d9f7d1e61628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -050035ae5cdc76bf5d0be3bc8e6e8b0fe2b3d9f7d1e6Eliminating l_single_C2_Skw flag.editoutput_2D_samples_module.F90editsilhs_api_module.F90editlatin_hypercube_driver_module.F90mixing_length.F900154499867b83b4b920a9a873e563f80b10b06061628883473000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_include_ice and sat_ice_ratio. For ticket #926 Results are BFB identical. 2021-08-13 14:37:53 -05000154499867b83b4b920a9a873e563f80b10b0606Eliminating l_include_ice and sat_ice_ratio.editmixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F9087fade11eec9686b269aed00bb9e08fd131fafe41629213967000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_update_pressure flag. For ticket #926. Results are confirmed to be BFB identical. 2021-08-17 10:26:07 -050087fade11eec9686b269aed00bb9e08fd131fafe4Eliminating l_update_pressure flag.editclubb_api_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F9083e7c97e95b713f89982fc94a9a5247d112a1cc91629473006000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_upwind_wpxp_ta flag. For issue #926. Results are confirmed BFB identical. 2021-08-20 10:23:26 -050083e7c97e95b713f89982fc94a9a5247d112a1cc9Eliminating l_upwind_wpxp_ta flag.editmodel_flags.F90editadvance_xm_wpxp_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90clip_explicit.F908a6392b854e8b0d8c8b72f94aa18dce014c77b6b1629917460000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the surface clipping coefficient... ...to avoid MC3E failure with PGI compiler. I find all cases run successfully with this coefficient, with ifort, gfortran, and PGI. 2021-08-25 13:51:00 -05008a6392b854e8b0d8c8b72f94aa18dce014c77b6bUpdating the surface clipping coefficient...editclip_explicit.F90advance_clubb_core_module.F90model_flags.F90sfc_varnce_module.F90clubb_api_module.F90cebe3ad6391c3d2ba0720cbe910b43c78b9ef0f61630332047000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comAdding in l_vary_convect_depth as requested. For ticket #905. Results are confirmed to be BFB identical. 2021-08-30 09:00:47 -0500cebe3ad6391c3d2ba0720cbe910b43c78b9ef0f6Adding in l_vary_convect_depth as requested.editadvance_clubb_core_module.F90editsfc_varnce_module.F90editmodel_flags.F90editclubb_api_module.F90advance_clubb_core_module.F90b24820513db462e4a5b1cae18b4a901d7e9bd8a21630547434000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving a couple of unused parameters from use statement. These are not caught by the gfortran compiler for whatever reason but the ifort compiler warned about them. 2021-09-01 20:50:34 -0500b24820513db462e4a5b1cae18b4a901d7e9bd8a2Removing a couple of unused parameters from use statement.editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90clip_explicit.F90ed78e345853d9af1f71e7300220392469b690b671630599690000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduPushing k loop down through clip_variance_level. This change is for the files advance_wp2_wp3_module and advance_xp2_xpyp_module. In order to make this change, I added a new variable in the upper-level subroutine that is an array version of the variable 'threshold' and passed it along to the lower subroutine. The loop is still present in order to calculate the values of threshold, however, the calls to the subroutine is outside of the loop. The only calculations inside the loop is for and intrensic function, max. All results are BFB identical for default case along with l_stats_samp being set to true. For ticket #951. 2021-09-02 11:21:30 -0500ed78e345853d9af1f71e7300220392469b690b67Pushing k loop down through clip_variance_level.editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editclip_explicit.F90parameters_tunable.F90747e30bcbd918a4dde0b1491b3ebfeaebdac9b591630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUdpates to make it possible for us to keep certain parameters equal to each other during tuning. Includes: * a new subroutine in parameters_tunable.F90 that will read a new namelist in the error_*.in files * updates to src/error.F90 to make sure the intended parameters are held equal throughout the tuning run * updates to src.error.F90 to print the variables that were held equal at the end of the tuning run, together with their beginning and ending values, and updates to ensure that the new tuned values are copied into the new paramters_tunable_*.in file so they can be used for plotting or restarting the tuner. * includes several simple error checks See #939. 2021-09-02 19:47:00 -0500747e30bcbd918a4dde0b1491b3ebfeaebdac9b59Udpates to make it possible for us to keep certain parameters equal to each other during tuning.editparameters_tunable.F90parameters_tunable.F90c787271c923e08a7bfa8db303bfee6588f840abf1630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFurther tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included. See #939. 2021-09-02 19:47:00 -0500c787271c923e08a7bfa8db303bfee6588f840abfFurther tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included.editparameters_tunable.F90parameters_tunable.F9068848116981910e70725c5fcc14d78e78f3f87ed1630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating some comments related to the tuner updates. See #939. 2021-09-02 19:47:00 -050068848116981910e70725c5fcc14d78e78f3f87edUpdating some comments related to the tuner updates.editparameters_tunable.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90ecf50b7dd71b99418e7b378199bec3f540f9ab8f1631318520000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have passed clubb_params down into advance_xm_wpxp_module.F90. The results from this revision are an exact match to the results from the previous revision for all cases. 2021-09-10 19:02:00 -0500ecf50b7dd71b99418e7b378199bec3f540f9ab8fI have passed clubb_params down into advance_xm_wpxp_module.F90.editadvance_xm_wpxp_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90ed5bed1dc8054413f5792e6d3abe64789523d7301631320025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space to trigger autoupdate. larson-group/sys_admin#755 2021-09-10 19:27:05 -0500ed5bed1dc8054413f5792e6d3abe64789523d730Adding space to trigger autoupdate. larson-group/sys_admin#755editadvance_clubb_core_module.F90advance_clubb_core_module.F90a7a1f100a8a3938b9a1717165b7daa1a6858c5141631562742000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove space to trigger autoupdate. larson-group/sys_admin#755 2021-09-13 14:52:22 -0500a7a1f100a8a3938b9a1717165b7daa1a6858c514Remove space to trigger autoupdate. larson-group/sys_admin#755editadvance_clubb_core_module.F90advance_clubb_core_module.F90579ae7bf3eba658a981d771ded27f16906ed78961631743991000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd space to trigger nightly tests. For larson-group/sys_admin#755. 2021-09-15 17:13:11 -0500579ae7bf3eba658a981d771ded27f16906ed7896Add space to trigger nightly tests. For larson-group/sys_admin#755.editadvance_clubb_core_module.F90pdf_closure_module.F9069a9f213c5189310355d117e82d7047829f4e5501632504823000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comSee ticket #958 2021-09-24 12:33:43 -050069a9f213c5189310355d117e82d7047829f4e550See ticketeditpdf_closure_module.F90advance_clubb_core_module.F903f4274296a097f61485983e5106c6480143821141632526019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug that was introduced in 6b0348e, where the logical flow was distorted within the trapezoidal rule code. This change does not affect standard CLUBB, where the trapezoidal rule is not used by default. However, it is important for CAM-CLUBB. 2021-09-24 18:26:59 -05003f4274296a097f61485983e5106c648014382114I am fixing a bug that was introduced in 6b0348e, where the logicaleditadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90b33af07b27883cd48fed63d9fa1557d3b2d4464d1632791429000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have passed down CLUBB's tunable parameters into advance_wp2_wp3_module.F90. The results in NetCDF output files from this revision are an exact match to the results in NetCDF output files from the previous revision for all cases. 2021-09-27 20:10:29 -0500b33af07b27883cd48fed63d9fa1557d3b2d4464dI have passed down CLUBB's tunable parameters into advance_wp2_wp3_module.F90.editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F90pdf_closure_module.F90f743922fbd8e78ed86270101cb28dbcbb5f5c0f71633009731000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comadded some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk 2021-09-30 08:48:51 -0500f743922fbd8e78ed86270101cb28dbcbb5f5c0f7added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to diskeditadvance_clubb_core_module.F90editstats_clubb_utilities.F90editpdf_closure_module.F90advance_xp2_xpyp_module.F900f9530e65dbeccc6103c09e4497072ffef4fbf361633124125000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates to separate out C4 and C14 in advance_xp2 module. This will make it easier to control which invrs_tau_* variable multiplies each term for example. This commit is BIT_CHANGING owing to order of operations differences, but the pyplotgen output for most cases looks identical to the naked eye. 2021-10-01 16:35:25 -05000f9530e65dbeccc6103c09e4497072ffef4fbf36Updates to separate out C4 and C14 in advance_xp2 module. This will make it easier to control which invrs_tau_* variable multiplies each term for example.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F904a3fe3288e95f3ff0042b328a2221113baa445a81633124125000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comChanging the name of dummy_1d variables for clarity. 2021-10-01 16:35:25 -05004a3fe3288e95f3ff0042b328a2221113baa445a8Changing the name of dummy_1d variables for clarity.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90724a970d8e0b0977d63512e25c4462d2600392901633127377000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI passed down CLUBB's tunable parameters into advance_xp2_xpyp_module.F90 for most parameters, excluding C4 and C14. Results are unchanged. 2021-10-01 17:29:37 -0500724a970d8e0b0977d63512e25c4462d260039290I passed down CLUBB's tunable parameters into advance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90860a184b28c1e3889801dfc39a1c96768fd870461633359161000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd a blank line to trigger nightly tests. 2021-10-04 09:52:41 -0500860a184b28c1e3889801dfc39a1c96768fd87046Add a blank line to trigger nightly tests.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90pdf_closure_module.F909ac836f8b76e39e820b5fecaae969f70a7b39c211633470307000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more of CLUBB's tunable parameters. 2021-10-05 16:45:07 -05009ac836f8b76e39e820b5fecaae969f70a7b39c21Passing down more of CLUBB's tunable parameters.editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90advance_clubb_core_module.F907b950575ac2c00c63de42c11f33c459e649af0281633470537000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI accidentally removed an important comment in the previous commit. 2021-10-05 16:48:57 -05007b950575ac2c00c63de42c11f33c459e649af028I accidentally removed an important comment in the previous commit.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F90835d3d3155f98b2a9b6ba60cb9fa02a94fb7800b1633637871000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more CLUBB tunable parameters. Everything is bit-for-bit. 2021-10-07 15:17:51 -0500835d3d3155f98b2a9b6ba60cb9fa02a94fb7800bPassing down more CLUBB tunable parameters.editadvance_helper_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90b65e4cfa8ab2923db015ef2723e3e69071d2c83c1633728172000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore passing down CLUBB parameters ... whoop-de-doo 2021-10-08 16:22:52 -0500b65e4cfa8ab2923db015ef2723e3e69071d2c83cMore passing down CLUBB parameters ... whoop-de-dooeditadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90Skx_module.F90diagnose_correlations_module.F90advance_clubb_core_module.F90sfc_varnce_module.F90351cc9aa27aa212ef6cefb48b6c85ec601a993b01633732238000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more tunable parameters and removing references to parameters_tunable. Results are bit-for-bit. 2021-10-08 17:30:38 -0500351cc9aa27aa212ef6cefb48b6c85ec601a993b0Passing down more tunable parameters and removing references toeditsfc_varnce_module.F90editadvance_clubb_core_module.F90editdiagnose_correlations_module.F90editSkx_module.F90advance_clubb_core_module.F903c883d2e41e77b89ea758961d5e11ac577a1fa821634055768000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving line to trigger the nightly tests for all repos. 2021-10-12 11:22:48 -05003c883d2e41e77b89ea758961d5e11ac577a1fa82Removing line to trigger the nightly tests for all repos.editadvance_clubb_core_module.F90pdf_closure_module.F90stats_variables.F90advance_clubb_core_module.F90stats_clubb_utilities.F90model_flags.F90stats_zt_module.F9024ab4b2089583ab183efc1963c23fb3153fd20481634058263000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comSee respective messages on the issue 958 on date 10/12/2021 2021-10-12 12:04:23 -050024ab4b2089583ab183efc1963c23fb3153fd2048See respective messages on the issue 958 on date 10/12/2021editstats_variables.F90editadvance_clubb_core_module.F90editmodel_flags.F90editpdf_closure_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90mixing_length.F90advance_clubb_core_module.F90parameters_tunable.F90clubb_api_module.F9040e87490f501202d6d95e7fd2c9c2ccab164ab731634087718000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduHandling the abomination that is lmin. 2021-10-12 20:15:18 -050040e87490f501202d6d95e7fd2c9c2ccab164ab73Handling the abomination that is lmin.editclubb_api_module.F90editmixing_length.F90editadvance_clubb_core_module.F90editparameters_tunable.F90diffusion.F90db7584133b87452bedc0538fed00f339dca49ae31634219703000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCommented out the k=1 boundary conditions in diffusion_zm_lhs and diffusion_zt_lhs, since these are not currently fed into the final LHS matrix. I included comments to describe why this was done. Results are b4b. See https://github.com/larson-group/clubb/issues/920#issuecomment-942735433. 2021-10-14 08:55:03 -0500db7584133b87452bedc0538fed00f339dca49ae3Commented out the k=1 boundary conditions in diffusion_zm_lhs and diffusion_zt_lhs, since these are not currently fed into the final LHS matrix. I included comments to describe why this was done. Results are b4b.editdiffusion.F90advance_clubb_core_module.F90mixing_length.F90c8cadb5e9708e898ac688db79e1da0ec0ff2ad291634254172000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing tunable parameters into the new tau code. 2021-10-14 18:29:32 -0500c8cadb5e9708e898ac688db79e1da0ec0ff2ad29Passing tunable parameters into the new tau code.editadvance_clubb_core_module.F90editmixing_length.F90mixing_length.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90clip_explicit.F90e6aa931ab2aa8134704c137db183ec06ee9dfcee1634768140000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassed down more parameters. Results are bit-for-bit. 2021-10-20 17:15:40 -0500e6aa931ab2aa8134704c137db183ec06ee9dfceePassed down more parameters. Results are bit-for-bit.editmixing_length.F90editclip_explicit.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90parameters_model.F90d07f2f6c2df3af24ddc90862bc2a656bdd9015d51634771341000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing through more clubb parameters. Bit-for-bit 2021-10-20 18:09:01 -0500d07f2f6c2df3af24ddc90862bc2a656bdd9015d5Passing through more clubb parameters. Bit-for-biteditparameters_model.F90editadvance_clubb_core_module.F90precipitation_fraction.F90setup_clubb_pdf_params.F90clubb_api_module.F90704eedf20b71e552fe32df3633005d50af58c27f1634854899000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down CLUBB's tunable parameters into the setup_pdf_parameters and precipitation fraction portions of the code. Everything is bit-for-bit. 2021-10-21 17:21:39 -0500704eedf20b71e552fe32df3633005d50af58c27fPassing down CLUBB's tunable parameters into the setup_pdf_parameters andeditsetup_clubb_pdf_params.F90editclubb_api_module.F90editprecipitation_fraction.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90model_flags.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F902ee6d2a1e31e43bca3e03a406917c4454cb71e671634935501000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThese updates incorporate some of Shixuan Zhang's changes, including: (1) upwind scheme for the eddy diffusion code, which Shixuan says does not make a huge difference; and (2) l_smooth_heaviside_tau_wpxp flag in the mixing_length.F90 code, which is intended to give smoother results. Both of the flags for these changes are turned off, but these updates are BIT_CHANGING because of some minor changes to the way that factors of rho_ds_* and invrs_rho_ds_* are handled going into the diffusion.F90 subroutines. Most cases look identical in pyplotgen, but sensitive cases like arm_97 and rico look slightly different. These changes were originally in pull request #962, but because of conflicts with the master branch code base that developed, they could not be rebased and merged, so I incorporated them into this new commit. 2021-10-22 15:45:01 -05002ee6d2a1e31e43bca3e03a406917c4454cb71e67These updates incorporate some of Shixuan Zhang's changes, including:editdiffusion.F90editadvance_windm_edsclrm_module.F90editmodel_flags.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editmixing_length.F90editadvance_wp2_wp3_module.F90pdf_closure_module.F90advance_clubb_core_module.F90new_pdf_main.F90new_hybrid_pdf_main.F9062d364561a81e2b878f95a327df36a4ca4bc31491635207177000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down CLUBB's tunable parameters into the remainder of the PDF subroutines. Everything is bit-for-bit. 2021-10-25 19:12:57 -050062d364561a81e2b878f95a327df36a4ca4bc3149Passing down CLUBB's tunable parameters into the remainder of theeditnew_pdf_main.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editnew_hybrid_pdf_main.F90advance_clubb_core_module.F90clubb_api_module.F9040315247ab8dc38382642bf30f1d96b329c1304d1635210039000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI passed down the forgotten thlp2_rad_coef tunable parameter. All bit-for-bit. 2021-10-25 20:00:39 -050040315247ab8dc38382642bf30f1d96b329c1304dI passed down the forgotten thlp2_rad_coef tunable parameter.editadvance_clubb_core_module.F90editclubb_api_module.F90diffusion.F9059c90454cd1a93522940f998c123795db4f23b171635271688000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables. 2021-10-26 13:08:08 -050059c90454cd1a93522940f998c123795db4f23b17Uncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables.editdiffusion.F90advance_xm_wpxp_module.F9024592ec9879d2c704c4d7301c8d18c794f2ff7441635291046000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am passing down the forgotten parameter, altitude threshold, in advance_xm_wpxp_module.F90. 2021-10-26 18:30:46 -050024592ec9879d2c704c4d7301c8d18c794f2ff744I am passing down the forgotten parameter, altitude threshold, ineditadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90bda6b42375dfc09907e7f9b37719b0d149f456711635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920. Results are b4b when the flag is turned off, which it currently is. 2021-10-27 16:16:11 -0500bda6b42375dfc09907e7f9b37719b0d149f45671Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.editadvance_wp2_wp3_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90fecf90bda798d6330f0c3982e5f24ef5dce274a31635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates as requested to the l_use_tke_in_K_dfsn code: - The name of the flag is changed to l_use_tke_in_wp2_wp3_K_dfsn - Comments are added to the main pieces of code in advance_wp2_wp3 - The flag is added to the "compatible_r8029" configurable flags file. See this comment https://github.com/larson-group/clubb/issues/920#issuecomment-931446401 and following for more information. 2021-10-27 16:16:11 -0500fecf90bda798d6330f0c3982e5f24ef5dce274a3Updates as requested to the l_use_tke_in_K_dfsn code:editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90output_netcdf.F90stats_clubb_utilities.F90parameters_tunable.F90clubb_api_module.F9048d34a44dac4e6c069b8edf7484da102a7b3e03c1635542624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the final stage of the "pass-down params" project. The results are bit-for-bit identical. 2021-10-29 16:23:44 -050048d34a44dac4e6c069b8edf7484da102a7b3e03cI am committing the final stage of the "pass-down params" project.editclubb_api_module.F90editoutput_netcdf.F90editstats_clubb_utilities.F90editparameters_tunable.F90silhs_api_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90a59d8a9d971fa58d96ca0c7c0e3a8999903394011635542624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the final stage of the "pass-down params" project. The results are bit-for-bit identical. 2021-10-29 16:23:44 -0500a59d8a9d971fa58d96ca0c7c0e3a899990339401I am committing the final stage of the "pass-down params" project.editlatin_hypercube_driver_module.F90editoutput_2D_samples_module.F90editsilhs_api_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90e21f33631a9962fc7af096d0f7c4a7a3f6ff021b1635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding an option to use invrs_tau_N2_iso for C4 terms. The same invrs_tau had been used for C4 and C14 terms, so some adjustments had to be made to separate them out (this was started with an earlier commit: https://github.com/larson-group/clubb/commit/ef3be1b1378bcd1a447f3866c9f88f8cc4764233). The flag is currently set to false so results will be b4b. See also the discussion here: https://github.com/larson-group/clubb/issues/920#issuecomment-920338746 and following comments. 2021-10-29 16:24:33 -0500e21f33631a9962fc7af096d0f7c4a7a3f6ff021bAdding an option to use invrs_tau_N2_iso for C4 terms. The same invrs_tau had been used for C4 and C14 terms, so some adjustments had to be made to separate them out (this was started with an earlier commit: https://github.com/larson-group/clubb/commit/ef3be1b1378bcd1a447f3866c9f88f8cc4764233). The flag is currently set to false so results will be b4b.editadvance_clubb_core_module.F90editmixing_length.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90575d6fe14ed80295cce4f30a51ff3d6aac83b5ee1635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comRenaming invrs_tau_zt and invrs_tauw3t to "invrs_tau_wp3_zt" in advance_wp2_wp3 to avoid confusion. This variable is only used for the wp3 C8 term, so one consistent name is simpler, and the name "invrs_tau_zt" is already used by another variable in advance_clubb_core. 2021-10-29 16:24:33 -0500575d6fe14ed80295cce4f30a51ff3d6aac83b5eeRenaming invrs_tau_zt and invrs_tauw3t to "invrs_tau_wp3_zt" in advance_wp2_wp3 to avoid confusion. This variable is only used for the wp3 C8 term, so one consistent name is simpler, and the name "invrs_tau_zt" is already used by another variable in advance_clubb_core.editadvance_wp2_wp3_module.F90mixing_length.F90b1a5dc605454ba0bd6ce90b50c1b1c4e5238daa21635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding comments for clarity. 2021-10-29 16:24:33 -0500b1a5dc605454ba0bd6ce90b50c1b1c4e5238daa2Adding comments for clarity.editmixing_length.F90clubb_api_module.F903cc2a48057cff47763a8de0fc7a9c2d6bd1717821635637985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot to add this necessary subroutine call to the clubb API. 2021-10-30 18:53:05 -05003cc2a48057cff47763a8de0fc7a9c2d6bd171782I forgot to add this necessary subroutine call to the clubb API.editclubb_api_module.F90advance_wp2_wp3_module.F9043b0e9b176c2c5f8d2537b61e1f1781a147878961635789347000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixing a minor accounting bug related to the changes in https://github.com/larson-group/clubb/commit/987d63de489d2baa09ad6e1538b2c6dbb7551690. There was some overcounting of the relevant terms. Results are b4b since the l_use_tke_in_wp2_wp3_K_dfsn flag is false. 2021-11-01 12:55:47 -050043b0e9b176c2c5f8d2537b61e1f1781a14787896Fixing a minor accounting bug related to the changes in https://github.com/larson-group/clubb/commit/987d63de489d2baa09ad6e1538b2c6dbb7551690. There was some overcounting of the relevant terms.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90advance_windm_edsclrm_module.F900c99971894e34f471bb13a0608799da3e26fd75b1636150605000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have turned the nu_vert_res_dep family of variables into a derived type and that variable is now being passed throughout the CLUBB code, rather than accessing variables through a USE statement. Everything is 100% bit-for-bit! 2021-11-05 17:16:45 -05000c99971894e34f471bb13a0608799da3e26fd75bI have turned the nu_vert_res_dep family of variables into a derivededitdiffusion.F90editadvance_windm_edsclrm_module.F90editclubb_api_module.F90editadvance_xp2_xpyp_module.F90editparameters_tunable.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90pdf_closure_module.F90stats_zt_module.F905aad62fb6b44998c8eeea4e274d53e9f5b6fda2a1636491816000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90 2021-11-09 15:03:36 -06005aad62fb6b44998c8eeea4e274d53e9f5b6fda2aAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90editstats_zt_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90pdf_closure_module.F900918704e4ca667f2dd901df9481fcab6d04ad5591636651886000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comResolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details 2021-11-11 11:31:26 -06000918704e4ca667f2dd901df9481fcab6d04ad559Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for detailseditadvance_clubb_core_module.F90editpdf_closure_module.F90editmodel_flags.F90pdf_closure_module.F9081d326f9c04198f2635a6b56b25bc395da7414351636664054000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge 2021-11-11 14:54:14 -060081d326f9c04198f2635a6b56b25bc395da741435Included a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after mergeeditpdf_closure_module.F90pdf_closure_module.F90dc3c4b8f58acb3383731109218706676f789be071636664205000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comfixed a typo in pdf_closure_module.f90, line 1284 2021-11-11 14:56:45 -0600dc3c4b8f58acb3383731109218706676f789be07fixed a typo in pdf_closure_module.f90, line 1284editpdf_closure_module.F90pdf_closure_module.F903c5029210448e2a9df59b5757f5cd952d8ab41881636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comSee ticket #958 2021-11-11 15:45:54 -06003c5029210448e2a9df59b5757f5cd952d8ab4188See ticketeditpdf_closure_module.F90stats_clubb_utilities.F90pdf_closure_module.F90a75256d61b53e5e09ec2e386790c89d4e51f04721636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comadded some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk 2021-11-11 15:45:54 -0600a75256d61b53e5e09ec2e386790c89d4e51f0472added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to diskeditpdf_closure_module.F90editstats_clubb_utilities.F90pdf_closure_module.F90stats_variables.F90stats_clubb_utilities.F90advance_clubb_core_module.F90model_flags.F90stats_zt_module.F90a83e91f008656f68d7535574cd90be52d82dd50f1636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comSee respective messages on the issue 958 on date 10/12/2021 2021-11-11 15:45:54 -0600a83e91f008656f68d7535574cd90be52d82dd50fSee respective messages on the issue 958 on date 10/12/2021editpdf_closure_module.F90editstats_variables.F90editstats_clubb_utilities.F90editmodel_flags.F90editadvance_clubb_core_module.F90editstats_zt_module.F90pdf_closure_module.F90stats_zt_module.F900ba99cd44f06718d995fadd8eacb1b6b191c8cf51636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90 2021-11-11 15:45:54 -06000ba99cd44f06718d995fadd8eacb1b6b191c8cf5Added sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90editstats_zt_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90pdf_closure_module.F90f4f26820fd4d03cd818e862b342716e11ea0c6731636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comResolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details 2021-11-11 15:45:54 -0600f4f26820fd4d03cd818e862b342716e11ea0c673Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for detailseditmodel_flags.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90pdf_closure_module.F902b90c415701478f497ef1b01769bff21fd75e46a1636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge 2021-11-11 15:45:54 -06002b90c415701478f497ef1b01769bff21fd75e46aIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after mergeeditpdf_closure_module.F90pdf_closure_module.F90e235fe78eae6527a511973ecdc46aaa4cb2b23791636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comfixed a typo in pdf_closure_module.f90, line 1284 2021-11-11 15:45:54 -0600e235fe78eae6527a511973ecdc46aaa4cb2b2379fixed a typo in pdf_closure_module.f90, line 1284editpdf_closure_module.F90advance_clubb_core_module.F90clubb_api_module.F90a3f3633376a9a95a1ddbab690425c6b71a4efbff1637038777000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing w_up_in_cloud out of advance_clubb_core 2021-11-15 22:59:37 -0600a3f3633376a9a95a1ddbab690425c6b71a4efbffPassing w_up_in_cloud out of advance_clubb_coreeditclubb_api_module.F90editadvance_clubb_core_module.F90stats_variables.F90e1572555370199b4fe0abf791462f1a0830a22f71638465215000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comfixed compiler warning regarding w_up_in_cloud 2021-12-02 11:13:35 -0600e1572555370199b4fe0abf791462f1a0830a22f7fixed compiler warning regarding w_up_in_cloudeditstats_variables.F90advance_clubb_core_module.F90fcf74be3a201e5043cabaad104cc37cdbb8c0e9d1638567586000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove clipping from a3_coef. In principle, removing the clipping should reduce noise. In practice, it makes rico noiser but mpace_b less noisy. It also allows twp_ice to run to completion with the gfortran compiler. This commit is BIT_CHANGING. For #965. 2021-12-03 15:39:46 -0600fcf74be3a201e5043cabaad104cc37cdbb8c0e9dRemove clipping from a3_coef.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90fe10a3988ec9c5ae38f9a6521364e5114303dc971639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comThese changes allow you to call the 4 clubb "advance" subroutines in any order that you want to try. In the default order (where the order is the same as found in the current version of the CLUBB master), results are bit-for-bit when compared to CLUBB master. 2021-12-17 17:36:25 -0600fe10a3988ec9c5ae38f9a6521364e5114303dc97These changes allow you to call the 4 clubb "advance" subroutines in anyeditadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90advance_clubb_core_module.F90da7e393336c65553c3897fdb66f276cc70ba5a581639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comPlacing the order variables in a nice, convenient place for testing use. 2021-12-17 17:36:25 -0600da7e393336c65553c3897fdb66f276cc70ba5a58Placing the order variables in a nice, convenient place for testing use.editadvance_clubb_core_module.F90advance_clubb_core_module.F908aae767c4fcc474647d6b76867a06416de8057bd1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI reordered advance_clubb_core so that the "Advance xp3" (which is a basic calculation of xp3 by the ansatz by default) section is moved out of the way of the "advance loop" to a point that is after advance_windm_edsclrm (or whatever will be called last in the advance loop. This change does not alter the default results. Everything is still bit-for-bit. 2021-12-17 17:36:25 -06008aae767c4fcc474647d6b76867a06416de8057bdI reordered advance_clubb_core so that the "Advance xp3" (which is aeditadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F9089ceef8b3be53379b14beba84d90cef1f9ec9a391639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI am committing the idiot-proofing code that forces l_min_xp2_from_corr_wx and l_enable_relaxed_clipping to have opposite values (one must be true and the other must be false). In this commit, both are set to true, so the code will produce an exception. 2021-12-17 17:36:25 -060089ceef8b3be53379b14beba84d90cef1f9ec9a39I am committing the idiot-proofing code that forces l_min_xp2_from_corr_wxeditadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F9051776de85578ab39a37d41b3a28771e66d58657f1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI am indenting the portion of the code where the advance subroutines are located within the new ordering loop. 2021-12-17 17:36:25 -060051776de85578ab39a37d41b3a28771e66d58657fI am indenting the portion of the code where the advance subroutineseditadvance_clubb_core_module.F90advance_clubb_core_module.F909ffac7f447029ffd2f8bac3d59fb93019127171e1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comTemporarily commenting out the idiot proofing in order to run some tests ... The results from this branch are still bit-for-bit with the master branch. 2021-12-17 17:36:25 -06009ffac7f447029ffd2f8bac3d59fb93019127171eTemporarily commenting out the idiot proofing in order to run some tests ...editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c587754da66182880513b7c16ccc23c289952ab51639784501000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow official reinstating the idiot-proofing and turning off the l_enable_relaxed_clipping flag. This commit is BIT_CHANGING 2021-12-17 17:41:41 -0600c587754da66182880513b7c16ccc23c289952ab5Now official reinstating the idiot-proofing and turning off theeditadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90b778226f990c7e852735312d0123c76452338a211639787077000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing some idiot proofing in regards to the advance subroutines ordering. No index can have a value of less than 1, greater than 4, and no index can have the same value as any other index. Each adv routine order index must have a unique value. 2021-12-17 18:24:37 -0600b778226f990c7e852735312d0123c76452338a21I am committing some idiot proofing in regards to the advanceeditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F901e234f56b4722f109ec9d657776244a94dadfc181640706464000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating CLUBB to pass uprcp and vprcp into and out of advance_clubb_core. 2021-12-28 09:47:44 -06001e234f56b4722f109ec9d657776244a94dadfc18Updating CLUBB to pass uprcp and vprcp into and out of advance_clubb_core.editclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90aa0da18281105ee85a148af1640952342bc058ec1640706663000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow that uprcp and vprcp have been passed through advance_clubb_core, I can get rid of this idiot-proofing code that stops the run when l_predict_upwp_vpwp is enabled and the PDF is in the "post" position. 2021-12-28 09:51:03 -0600aa0da18281105ee85a148af1640952342bc058ecNow that uprcp and vprcp have been passed through advance_clubb_core,editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90clubb_api_module.F90af8d23225e3393b52c07fbe123f01444d14124f01640825295000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding more arguments to the argument list for advance_clubb_core so that the model now runs with the PDF in the post position. Result from this change are still bit-for-bit. 2021-12-29 18:48:15 -0600af8d23225e3393b52c07fbe123f01444d14124f0I am adding more arguments to the argument list for advance_clubb_coreeditclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90model_flags.F90af2e320388670ca0a57e2f176c1bc5d627b9098d1641839832000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comInsert print about overwriting default flags with namelist values 2022-01-10 12:37:12 -0600af2e320388670ca0a57e2f176c1bc5d627b9098dInsert print about overwriting default flags with namelist valueseditmodel_flags.F90parameters_tunable.F908f225830ad630ade0b0f818521e3420cf71da15d1641840286000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comInsert print about overwriting default parameters with namelist values 2022-01-10 12:44:46 -06008f225830ad630ade0b0f818521e3420cf71da15dInsert print about overwriting default parameters with namelist valueseditparameters_tunable.F90clubb_api_module.F90f3942b808f629c080b43dfaca5c50c6ce080ef9a1641936564000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking api version of setup_grid. larson-group/clubb#972 2022-01-11 15:29:24 -0600f3942b808f629c080b43dfaca5c50c6ce080ef9aMaking api version of setup_grid. larson-group/clubb#972editclubb_api_module.F90silhs_api_module.F903db947c8588aef8f34322cfdf19bc0b3e0e7be791642027821000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking some paramters_silhs variables available from the silhs api 2022-01-12 16:50:21 -06003db947c8588aef8f34322cfdf19bc0b3e0e7be79Making some paramters_silhs variables available from the silhs apieditsilhs_api_module.F90advance_clubb_core_module.F9065acb9b0c8906c6bd4001aa5eb2cb31b117608351642031683000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comComment out setting of fatal error when l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F. The goal is to allow the clubb_backwards_compatibility_gfortran_test Jenkins test to pass again. For #846. 2022-01-12 17:54:43 -060065acb9b0c8906c6bd4001aa5eb2cb31b11760835Comment out setting of fatal erroreditadvance_clubb_core_module.F90parameters_tunable.F907ec140fc6d8e5e40e4dd195f225d62cdaa8fbabe1642115849000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should be BIT_CHANGING, but only because the value of Cx_min should change in the netcdf file. This will not be answer changing. 2022-01-13 17:17:29 -06007ec140fc6d8e5e40e4dd195f225d62cdaa8fbabeThis should be BIT_CHANGING, but only because the value of Cx_min should change in the netcdf file. This will not be answer changing.editparameters_tunable.F90parameters_tunable.F905bf9927ebb2fdd8006f9aee4380dd467515d2c061642119958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the value of C_invrs_tau_shear from 0.02 to 0.15. This commit is BIT_CHANGING 2022-01-13 18:25:58 -06005bf9927ebb2fdd8006f9aee4380dd467515d2c06Changing the value of C_invrs_tau_shear from 0.02 to 0.15.editparameters_tunable.F90advance_clubb_core_module.F9004279f676a57a9710d4b60f0dafcd0c331a4f18e1642120044000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAvoiding stats call for variables that are not set when l_diag_Lscale_from_tau is not true. 2022-01-13 18:27:24 -060004279f676a57a9710d4b60f0dafcd0c331a4f18eAvoiding stats call for variables that are not set when l_diag_Lscale_from_tau is not true.editadvance_clubb_core_module.F90parameters_tunable.F9003f14dd627f8df25c1e8c40b407a2c60b943f9721642203316000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so that CLUBB (particularly the MC3E case) completes successfully for all compiler tests. You might say that this is BIT_CHANGING. 2022-01-14 17:35:16 -060003f14dd627f8df25c1e8c40b407a2c60b943f972Adjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so thateditparameters_tunable.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90constants_clubb.F90advance_helper_module.F90d8836de198f0c3f3457f195fb08642497dead21b1642358928000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zm This option calls subroutine smooth_heaviside_peskin, which implements the smooth Peskin Heaviside function. The option is turned off for now, and so the results should remain bit for bit. For #965. 2022-01-16 12:48:48 -0600d8836de198f0c3f3457f195fb08642497dead21bAdd l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zmeditmixing_length.F90editmodel_flags.F90editclubb_api_module.F90editconstants_clubb.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90pdf_parameter_module.F90advance_clubb_core_module.F90clubb_api_module.F904d506fc219eb83b1977f318f6b46c3a1f75f09c51642541581000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column loop into advance_clubb_core, and adding interface for it so that we will not need to update any host models. Everything is bit-for-bit, testing all standalone cases and our cam_coarse res run. larson-group/clubb#972 2022-01-18 15:33:01 -06004d506fc219eb83b1977f318f6b46c3a1f75f09c5Pushing column loop into advance_clubb_core, and adding interface for it so that we will not need to update any host models. Everything is bit-for-bit, testing all standalone cases and our cam_coarse res run. larson-group/clubb#972editpdf_parameter_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90clubb_api_module.F90946ca541e9acab72c5dbd52b2df8651bfc0bfb761642618464000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972 2022-01-19 12:54:24 -0600946ca541e9acab72c5dbd52b2df8651bfc0bfb76Adding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972editclubb_api_module.F90clubb_api_module.F907e6744fa4864a0219f8e4a32d0d72fb2664598d91642631316000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972 2022-01-19 16:28:36 -06007e6744fa4864a0219f8e4a32d0d72fb2664598d9Making single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972editclubb_api_module.F90advance_clubb_core_module.F900bae8e4aaa7651515c8d5df797909bd9de345c2f1642725231000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in advance_clubb_core. larson-group/clubb#972 2022-01-20 18:33:51 -06000bae8e4aaa7651515c8d5df797909bd9de345c2fBreaking up column loop in advance_clubb_core. larson-group/clubb#972editadvance_clubb_core_module.F90advance_clubb_core_module.F90d55d2cbc2faec828838317f478b04fa8ea410f7a1642801850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure and breaking it up. larson-group/clubb#972 2022-01-21 15:50:50 -0600d55d2cbc2faec828838317f478b04fa8ea410f7aPushing loop into pdf_closure and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90parameters_tunable.F90fabb386b09890bd8a64d59b5ae24bae937af9f931642810666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulence from going to the model top, which ultimately caused MC3E to crash by becoming too cold. Additionally, I set C_invrs_tau_shear back to 0.15 from 0.16. This commit is BIT_CHANGING. 2022-01-21 18:17:46 -0600fabb386b09890bd8a64d59b5ae24bae937af9f93I changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulenceeditparameters_tunable.F90advance_clubb_core_module.F90pdf_closure_module.F902c6b628542302815ac566410bfa583f64b2524641643072201000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972 2022-01-24 18:56:41 -06002c6b628542302815ac566410bfa583f64b252464Pushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90af9c183212dde92967cca80d87ef80f1aabd76b11643141070000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972 2022-01-25 14:04:30 -0600af9c183212dde92967cca80d87ef80f1aabd76b1Making the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972editpdf_closure_module.F90editadvance_clubb_core_module.F90model_flags.F90c0b2297dad094c1121026e8520de001748c1d0a71643148928000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking a commit that officially places the call to the PDF in the "post" position (meaning after CLUBB's predictive fields have been advanced). This commit is BIT_CHANGING 2022-01-25 16:15:28 -0600c0b2297dad094c1121026e8520de001748c1d0a7Making a commit that officially places the call to the PDF in the "post"editmodel_flags.F90advance_clubb_core_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90f1c545226c133b42ec11c523daee00e938910cf31643158136000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972 2022-01-25 18:48:56 -0600f1c545226c133b42ec11c523daee00e938910cf3Pushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F9007b04afa6c644e22e0a920739ba49eab985c08821643158635000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot an & symbol. 2022-01-25 18:57:15 -060007b04afa6c644e22e0a920739ba49eab985c0882Forgot an & symbol.editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90376d0e4907dc788fce6a52b6d0dc5ad4d7481f341643238890000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduWe need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972 2022-01-26 17:14:50 -0600376d0e4907dc788fce6a52b6d0dc5ad4d7481f34We need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90clubb_api_module.F900201571e2624e4580ec5e4f44582e187d7908ebb1643342499000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating ice_supersat_frac to be an intent(inout) variable for advance_clubb_core. When the PDF is in the "post" position, there is a chance that it can be used before it is set unless it is preserved from timestep to timestep. 2022-01-27 22:01:39 -06000201571e2624e4580ec5e4f44582e187d7908ebbI am updating ice_supersat_frac to be an intent(inout) variable foreditadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F90aa44cb502926842665f158cbfab7c8cf1df5c3c51643406577000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduIntializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972 2022-01-28 15:49:37 -0600aa44cb502926842665f158cbfab7c8cf1df5c3c5Intializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972editadvance_clubb_core_module.F90pdf_parameter_module.F905088c109e589f0398450ea86996147836b8b75d81643411572000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972 2022-01-28 17:12:52 -06005088c109e589f0398450ea86996147836b8b75d8Fixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972editpdf_parameter_module.F90grid_class.F90advance_clubb_core_module.F90f1154aed2f15410ec35a99adb03d2d517f9fad2d1643747310000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into zm2zt and zt2zm. larson-group/clubb#972 2022-02-01 14:28:30 -0600f1154aed2f15410ec35a99adb03d2d517f9fad2dPushing column index into zm2zt and zt2zm. larson-group/clubb#972editgrid_class.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90Skx_module.F90932c80e272c18da1ccf51719eed39b370ca459121643751025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into Skx_func and making it a subroutine. larson-group/clubb#972 2022-02-01 15:30:25 -0600932c80e272c18da1ccf51719eed39b370ca45912Pushing column index into Skx_func and making it a subroutine. larson-group/clubb#972editSkx_module.F90editadvance_clubb_core_module.F90sigma_sqd_w_module.F90advance_clubb_core_module.F90grid_class.F90advance_helper_module.F90a3665dbc5e18abd7e8281d753abed2bbb03d8f1c1643762869000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA variety of small loop pushing. larson-group/clubb#972 2022-02-01 18:47:49 -0600a3665dbc5e18abd7e8281d753abed2bbb03d8f1cA variety of small loop pushing. larson-group/clubb#972editadvance_helper_module.F90editadvance_clubb_core_module.F90editgrid_class.F90editsigma_sqd_w_module.F90sigma_sqd_w_module.F907f7db11cab062c725e5fe2787d45f0225e4ba60f1643831947000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed small bug that slipped through because the G_unit tests use nz=1. 2022-02-02 13:59:07 -06007f7db11cab062c725e5fe2787d45f0225e4ba60fFixed small bug that slipped through because the G_unit tests use nz=1.editsigma_sqd_w_module.F90advance_clubb_core_module.F90mixing_length.F90advance_helper_module.F903c97bd65f2133f211f2d8502473f2cf32a025be11643840875000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972 2022-02-02 16:27:55 -06003c97bd65f2133f211f2d8502473f2cf32a025be1Pushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972editadvance_clubb_core_module.F90editadvance_helper_module.F90editmixing_length.F90pdf_parameter_module.F90df7da80153115bfa7df377decb342e4aee4481cf1643927836000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a subroutine that prints that values of all PDF parameters in type pdf_parameter, which is a useful debugging tool. 2022-02-03 16:37:16 -0600df7da80153115bfa7df377decb342e4aee4481cfI added a subroutine that prints that values of all PDF parameters ineditpdf_parameter_module.F90advance_clubb_core_module.F90Skx_module.F90445f590cf1d278eee326fe3a3355fdc0deab0d211643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall changes and a loop push. larson-group/clubb#972 2022-02-03 18:15:33 -0600445f590cf1d278eee326fe3a3355fdc0deab0d21Small changes and a loop push. larson-group/clubb#972editadvance_clubb_core_module.F90editSkx_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c9f575df03cc82bf9e0783bd2608ef27d0b4b6371643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into advance_xm_wpxp. larson-group/clubb#972 2022-02-03 18:15:33 -0600c9f575df03cc82bf9e0783bd2608ef27d0b4b637Pushing loop into advance_xm_wpxp. larson-group/clubb#972editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90sigma_sqd_w_module.F90eb106afc75f2daab341edd31b7508557525f6fb21643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the G_unit test use a dummy column index. This makes it so we don't need an interface for compute_sigma_sqd_w since now we only use it with 2 dimensions. This is just nicer. larson-group/clubb#972 2022-02-03 18:15:33 -0600eb106afc75f2daab341edd31b7508557525f6fb2Making the G_unit test use a dummy column index. This makes it so we don't need an interface for compute_sigma_sqd_w since now we only use it with 2 dimensions. This is just nicer. larson-group/clubb#972editsigma_sqd_w_module.F90advance_xm_wpxp_module.F90bcda3f8c752053316304a5ce21d56977f49c53b41644004220000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in advance_xm_wpxp_module. larson-group/clubb#972 2022-02-04 13:50:20 -0600bcda3f8c752053316304a5ce21d56977f49c53b4Breaking up column loop in advance_xm_wpxp_module. larson-group/clubb#972editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F900a7b2cda84e35cf4f34a3a582daf8b67a6a621941644016923000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column loop into local functions. larson-group/clubb#972 2022-02-04 17:22:03 -06000a7b2cda84e35cf4f34a3a582daf8b67a6a62194Pushing column loop into local functions. larson-group/clubb#972editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90775ab377c5ff0ed340e9dbfa0bcb7af76d1687d01644444703000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving stats call for uprcp and vprcp to after they are calculated. This fixes the silhs restart test. But does not seem to fix the E3SM or CAM tests that are still failing. 2022-02-09 16:11:43 -0600775ab377c5ff0ed340e9dbfa0bcb7af76d1687d0Moving stats call for uprcp and vprcp to after they are calculated. This fixes the silhs restart test. But does not seem to fix the E3SM or CAM tests that are still failing.editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90clubb_api_module.F90402036c07820f647c23fbe11eae422423adacad71645044208000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding 2D version of zt2zm and zm2zt to clubb_api 2022-02-16 14:43:28 -0600402036c07820f647c23fbe11eae422423adacad7Adding 2D version of zt2zm and zm2zt to clubb_apieditclubb_api_module.F90advance_xm_wpxp_module.F9076ade90ca6c58592fb9ad1ed4232a03249257f021645143350000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPushing loop into solve_xm_wpxp_with_single_lhs (#986) Co-authored-by: Peter Roels <56004443+pbroels@users.noreply.github.com> 2022-02-17 18:15:50 -060076ade90ca6c58592fb9ad1ed4232a03249257f02Pushing loop into solve_xm_wpxp_with_single_lhs (#986)editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F905c71aa30cb7d3a8d1d12c9fcfee59669157b08961645475225000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRefactoring to remove need for global stats scratch variables. (#988) * Refactoring to remove need for global stats scratch variables. larson-group/clubb#972 * Changing name of new stats_scratch variables to be more descriptive. 2022-02-21 14:27:05 -06005c71aa30cb7d3a8d1d12c9fcfee59669157b0896Refactoring to remove need for global stats scratch variables. (#988)editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90ed18e641c3b7fa3567c638f8fd52f6f4fe01f43d1645649579000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGunthers branch (#989) * Refactoring to remove need for global stats scratch variables. larson-group/clubb#972 * Changing name of new stats_scratch variables to be more descriptive. * Breaking up column loop in solve_xm_wpxp_with_single_lhs. larson-group/clubb#972 * Pushing loop into solve_xm_wpxp_with_multiple_lhs and breaking it up. larson-group/clubb#972 * Pusing loop into xm_wpxp_rhs and xm_wpxp_lhs. larson-group/clubb#972 * Pushing loop into xm_wpxp_solve and xm_wpxp_clipping_and_stats. larson-group/clubb#972 2022-02-23 14:52:59 -0600ed18e641c3b7fa3567c638f8fd52f6f4fe01f43dGunthers branch (#989)editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F900984f81b081d6be7b58a3282fdc3759f6e2f78d41645697712000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small bug that breaks runs with scalars. 2022-02-24 04:15:12 -06000984f81b081d6be7b58a3282fdc3759f6e2f78d4Fixing small bug that breaks runs with scalars.editadvance_xm_wpxp_module.F90advance_helper_module.F90fd4c092e458fd1143008dd04add873fdeedc836a1645806997000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comImplementations of smooth min, max and heaviside function. Added G-Unit tests 2022-02-25 10:36:37 -0600fd4c092e458fd1143008dd04add873fdeedc836aImplementations of smooth min, max and heaviside function. Added G-Unit testseditadvance_helper_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90bc3082fb4215cf63236c125d1ead5be3a0898c051646171654000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking setup_pdf_parameters accept ngrdcols size arrays of stats and grid types. 2022-03-01 15:54:14 -0600bc3082fb4215cf63236c125d1ead5be3a0898c05Making setup_pdf_parameters accept ngrdcols size arrays of stats and grid types.editclubb_api_module.F90editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90clubb_api_module.F908decd62fd4618a4cfc05359ec59aef618950cee51646172170000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot two small changes. larson-group/cam#129 2022-03-01 16:02:50 -06008decd62fd4618a4cfc05359ec59aef618950cee5Forgot two small changes. larson-group/cam#129editclubb_api_module.F90editsetup_clubb_pdf_params.F90precipitation_fraction.F90setup_clubb_pdf_params.F906a574df7e37c1b18df4b266fd75de92528120b031646174455000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving need for data copies. larson-group/cam#129 2022-03-01 16:40:55 -06006a574df7e37c1b18df4b266fd75de92528120b03Removing need for data copies. larson-group/cam#129editsetup_clubb_pdf_params.F90editprecipitation_fraction.F90setup_clubb_pdf_params.F90a21672f556ca63ae1e7cc4b7851d24cec405ae871646175410000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging column loop index from j to i. larson-group/cam#129 2022-03-01 16:56:50 -0600a21672f556ca63ae1e7cc4b7851d24cec405ae87Changing column loop index from j to i. larson-group/cam#129editsetup_clubb_pdf_params.F90components/eam/src/physics/cam/subcol_SILHS.F90a001e166609cd79fe1e4ff757044b5111c2f72ba1646950428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-03-10 16:13:48 -0600a001e166609cd79fe1e4ff757044b5111c2f72baMaking compatible with latest clubb change.editcomponents/eam/src/physics/cam/subcol_SILHS.F90latin_hypercube_driver_module.F90f078452993a62351642178c7d76a340f6406c6931646950443000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving data copies that we don't need anymore. This still runs correctly on GPUs. 2022-03-10 16:14:03 -0600f078452993a62351642178c7d76a340f6406c693Removing data copies that we don't need anymore. This still runs correctly on GPUs.editlatin_hypercube_driver_module.F90silhs_api_module.F90latin_hypercube_driver_module.F908abf9d87614f2fdc27dfaf72324f917be702d5821646950443000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking clip_transform_silhs_output use an array of gr. This is how it should have been once the column loop was pushed down into it, but at the time clubb was using gr through a use statement making that not possible. 2022-03-10 16:14:03 -06008abf9d87614f2fdc27dfaf72324f917be702d582Making clip_transform_silhs_output use an array of gr. This is how it should have been once the column loop was pushed down into it, but at the time clubb was using gr through a use statement making that not possible.editsilhs_api_module.F90editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F907d2d3a8a4ef4a33a36ce8cc202e27c17e9c9378b1646950443000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comNo more need for these data copies anymore now that pdf_params is allocated with ngrdcol rather than pcols. 2022-03-10 16:14:03 -06007d2d3a8a4ef4a33a36ce8cc202e27c17e9c9378bNo more need for these data copies anymore now that pdf_params is allocated with ngrdcol rather than pcols.editlatin_hypercube_driver_module.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90c6af37067bc7ff860b4ca39b0fda2917a07b76421646976763000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/eam/src/physics/silhs 2022-03-10 23:32:43 -0600c6af37067bc7ff860b4ca39b0fda2917a07b7642Raw-copy updating components/eam/src/physics/silhseditcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90advance_clubb_core_module.F90960a16c889d0898e95595a6bb59a2f296c3bffa71647296994000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdds a blank line to trigger git merge with E3SM 2022-03-14 17:29:54 -0500960a16c889d0898e95595a6bb59a2f296c3bffa7Adds a blank line to trigger git merge with E3SMeditadvance_clubb_core_module.F90advance_clubb_core_module.F906216b8e6e638a0862df4c9ccde780c0de21dc4841647434771000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoves a blank line in order to trigger merge with E3SM 2022-03-16 07:46:11 -05006216b8e6e638a0862df4c9ccde780c0de21dc484Removes a blank line in order to trigger merge with E3SMeditadvance_clubb_core_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F90e71c3c281fdec86134cae0107f02f9eefd7a6edd1647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. This essentially completes advance_xm_wpxp for now. larson-group/clubb#972 2022-03-16 15:18:23 -0500e71c3c281fdec86134cae0107f02f9eefd7a6eddPushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. This essentially completes advance_xm_wpxp for now. larson-group/clubb#972editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90advance_xp2_xpyp_module.F902422347813eaf7ab1402e8abb63072fdb362f0fe1647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comReplacing the i loop iterator for scalars with sclr. 2022-03-16 15:18:23 -05002422347813eaf7ab1402e8abb63072fdb362f0feReplacing the i loop iterator for scalars with sclr.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F900e2049891bace38ffa03c49004d4dbbb303817fb1647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing loop into advance_xp2_wpxp. 2022-03-16 15:18:23 -05000e2049891bace38ffa03c49004d4dbbb303817fbPushing loop into advance_xp2_wpxp.editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90548c0002fa64ad11e86a754012f61a0b1fb7ef521647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving the lhs_dp1 calculation to outside of xp2_xpyp_lhs. This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats. 2022-03-16 15:18:23 -0500548c0002fa64ad11e86a754012f61a0b1fb7ef52Moving the lhs_dp1 calculation to outside of xp2_xpyp_lhs. This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90b042151c9b68a3625a5ed0716f92daca6fd56b6f1647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call. 2022-03-16 15:18:23 -0500b042151c9b68a3625a5ed0716f92daca6fd56b6fMoving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F908c8f3fa1d2bbf4c47cc00e8c15eb63354ac4ba411647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way. 2022-03-16 15:18:23 -05008c8f3fa1d2bbf4c47cc00e8c15eb63354ac4ba41Removing need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90d2b10e704a1f3896db7b05eab3249c1db38f27541647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn. 2022-03-16 15:18:23 -0500d2b10e704a1f3896db7b05eab3249c1db38f2754Adding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90ecf272020b8de2182a362ed7eca489443cdcbb941647461903000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comChanging names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp. 2022-03-16 15:18:23 -0500ecf272020b8de2182a362ed7eca489443cdcbb94Changing names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp.editadvance_xp2_xpyp_module.F90cime_config/machines/config_compilers.xml87474030f60af1cc5e4c283abbb6eb18d329f5431647894845000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comChanging Carson compiler definition to work for the Carson nightly tests. larson-group/sys_admin#763 2022-03-21 15:34:05 -050087474030f60af1cc5e4c283abbb6eb18d329f543Changing Carson compiler definition to work for the Carson nightly tests. larson-group/sys_admin#763editcime_config/machines/config_compilers.xmladvance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F902d1a62e415c2203ea43159b80f23d66b062d785d1648248221000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added l_relax_clipping to CLUBB's config flags. 2022-03-25 17:43:41 -05002d1a62e415c2203ea43159b80f23d66b062d785dI added l_relax_clipping to CLUBB's config flags.editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90editclubb_api_module.F90components/eam/src/physics/cam/clubb_intr.F90a8d1ecd556f962629e8535341c2c2803505990911648252580000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded the l_enable_relaxed_clipping interface to E3SM-CLUBB 2022-03-25 18:56:20 -0500a8d1ecd556f962629e8535341c2c280350599091Added the l_enable_relaxed_clipping interface to E3SM-CLUBBeditcomponents/eam/src/physics/cam/clubb_intr.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F9036dbc89e7df189d2910e3b3fc2d3bbe5a40841491648591498000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a3_coef_min to the list of CLUBB's tunable parameter and then commented-in the a3_coef clipping line found in advance_clubb_core.F90. The results of this revision are bit-for-bit. 2022-03-29 17:04:58 -050036dbc89e7df189d2910e3b3fc2d3bbe5a4084149Added a3_coef_min to the list of CLUBB's tunable parameter and theneditadvance_clubb_core_module.F90editclubb_api_module.F90editparameter_indices.F90editparameters_tunable.F90components/eam/src/physics/cam/clubb_intr.F90c2c34689f97031c281337580c6cf0cd8c59e32361648595066000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding CLUBB's new a3_coef_min tunable parameter to the E3SM-CLUBB code. 2022-03-29 18:04:26 -0500c2c34689f97031c281337580c6cf0cd8c59e3236Adding CLUBB's new a3_coef_min tunable parameter to the E3SM-CLUBB code.editcomponents/eam/src/physics/cam/clubb_intr.F90jenkins_tests/e3smClubbCodeCopy/e3smClubbCodeCopy.bashe1e576d3181279d9803a49a0df1b2d655443b17f1648763643000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduAdding e3smClubbCodeCopy.bash to the jenkins directory for testing Clubb changes. larson-group/sys_admin#768 2022-03-31 16:54:03 -0500e1e576d3181279d9803a49a0df1b2d655443b17fAdding e3smClubbCodeCopy.bash to the jenkins directory for testing Clubb changes. larson-group/sys_admin#768addjenkins_tests/e3smClubbCodeCopy/e3smClubbCodeCopy.bashadvance_clubb_core_module.F90clubb_api_module.F90ccb8a9a9a67b277371197b3aadf8aa9cc03fb0861649199568000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded idiot-proofing to print a warning message when l_diag_Lscale_from_tau is being used and C1, C1b, C2rt, C2thl, C2rtthl, C6rt, C6rtb, C6thl, C6thlb, or C14 do not have a value 1. This can later be upgraded to a fatal error when we can finally run this code with the C2 and C6 families of parameters having a value of 1 (that value is currently 2 right now). 2022-04-05 17:59:28 -0500ccb8a9a9a67b277371197b3aadf8aa9cc03fb086Added idiot-proofing to print a warning message when l_diag_Lscale_from_taueditclubb_api_module.F90editadvance_clubb_core_module.F90components/eam/src/physics/cam/clubb_intr.F9049a8e4f9f311e50d8f19c9e2a1cc22e1044bb9b11649200196000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating the call to setup_clubb_core_api based on new CLUBB changes found in CLUBB changeset d0c9b34. 2022-04-05 18:09:56 -050049a8e4f9f311e50d8f19c9e2a1cc22e1044bb9b1Updating the call to setup_clubb_core_api based on new CLUBBeditcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90d1f262761ae4dbbcf74129182c724dbf5c7d606a1649379994000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in clubb_tend_cam. 2022-04-07 20:06:34 -0500d1f262761ae4dbbcf74129182c724dbf5c7d606aBreaking up column loop in clubb_tend_cam.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F9001b2efa06e1d3a73179c28133ae7b38e53be38511649444791000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCommenting out sponge damping code. This is BIT_CHANGING. 2022-04-08 14:06:31 -050001b2efa06e1d3a73179c28133ae7b38e53be3851Commenting out sponge damping code. This is BIT_CHANGING.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90b9defd7e5ca98a8cfa0579f3284b18459e565c471649445539000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis fixes a bug that was exposed when we switched to having pdf closure in the post position. pdf_params_chnk is the structure that keeps track of the pdf_params each timestep, and the single_col version is only a local variable we use to get pdf_params from clubb then save them into the chnk version. But we were not copying from the chnk version into the single_col version before calling clubb, so when pdf_closure is done in post, we had incorrect pdf_params as input. This is BIT_CHANGING. This will also be deleted in the next commit, it is mostly symbolic just to demonstrate what exactly the problem was. 2022-04-08 14:18:59 -0500b9defd7e5ca98a8cfa0579f3284b18459e565c47This fixes a bug that was exposed when we switched to having pdf closure in the post position. pdf_params_chnk is the structure that keeps track of the pdf_params each timestep, and the single_col version is only a local variable we use to get pdf_params from clubb then save them into the chnk version. But we were not copying from the chnk version into the single_col version before calling clubb, so when pdf_closure is done in post, we had incorrect pdf_params as input. This is BIT_CHANGING. This will also be deleted in the next commit, it is mostly symbolic just to demonstrate what exactly the problem was.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F904c916bb095ba518c52a09fc774a988290a344d1a1649446338000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking clubb_tend_cam use the multi column version of clubb. This is bit-for-bit. 2022-04-08 14:32:18 -05004c916bb095ba518c52a09fc774a988290a344d1aMaking clubb_tend_cam use the multi column version of clubb. This is bit-for-bit.editcomponents/eam/src/physics/cam/clubb_intr.F90clubb_precision.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clip_explicit.F90clubb_api_module.F90advance_windm_edsclrm_module.F90d18ee7f0a7af432d15212a93179f0d3777775f4d1649805129000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the code for the l_linearize_pbl_winds flag that was originally brought to us by Sean Santos 2022-04-12 18:12:09 -0500d18ee7f0a7af432d15212a93179f0d3777775f4dI added the code for the l_linearize_pbl_winds flag that was originallyeditadvance_clubb_core_module.F90editmodel_flags.F90editadvance_xm_wpxp_module.F90editclip_explicit.F90editclubb_api_module.F90editclubb_precision.F90editadvance_windm_edsclrm_module.F90components/eam/src/physics/cam/clubb_intr.F9096fb8bb75bbe1926d093e470c267ecb3e1a5ab691650403349000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating E3SM for the latest version of CLUBB. 2022-04-19 16:22:29 -050096fb8bb75bbe1926d093e470c267ecb3e1a5ab69Updating E3SM for the latest version of CLUBB.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90c4fbf2bdf2019e4ec5696e75443cde5807a4c17c1650562729000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small bug. This wasn't answer changing, but would cause a crash if we turned bound checking debug flags on. 2022-04-21 12:38:49 -0500c4fbf2bdf2019e4ec5696e75443cde5807a4c17cFixing small bug. This wasn't answer changing, but would cause a crash if we turned bound checking debug flags on.editcomponents/eam/src/physics/cam/clubb_intr.F90advance_xp2_xpyp_module.F9022792d68ce4f823ad5ac389361dae0f25f10bcd81650572938000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGunthers branch (#996) * Pushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. This essentially completes advance_xm_wpxp for now. larson-group/clubb#972 * Replacing the i loop iterator for scalars with sclr. * Pushing loop into advance_xp2_wpxp. * Moving the lhs_dp1 calculation to outside of xp2_xpyp_lhs. This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats. * Moving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call. * Removing need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way. * Adding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn. * Changing names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp. * Breaking up column loop in advance_xp2_xpyp and pushing column loop into calc_xp2_xpyp_ta_terms. larson-group/cam#972 * Breaking up column loop in calc_xp2_xpyp_ta_terms. * Pushing loop into solve_xp2_xpyp_with_single_lhs. * Fixing mangled merge. * Pushing loops down. * Pushing loops and small cleanup. 2022-04-21 15:28:58 -050022792d68ce4f823ad5ac389361dae0f25f10bcd8Gunthers branch (#996)editadvance_xp2_xpyp_module.F90jenkins_tests/e3sm_clubb_code_copy/Jenkinsfilejenkins_tests/e3sm_clubb_code_copy/e3sm_clubb_code_copy.bash4d00bf4473f2bb8043b78b966ea3fcb8b865d1bc1650580569000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduAdding in the jenkins file and updating names for the copy test. 2022-04-21 17:36:09 -05004d00bf4473f2bb8043b78b966ea3fcb8b865d1bcAdding in the jenkins file and updating names for the copy test.addjenkins_tests/e3sm_clubb_code_copy/Jenkinsfileaddjenkins_tests/e3sm_clubb_code_copy/e3sm_clubb_code_copy.bashjenkins_tests/e3smClubbCodeCopy/e3smClubbCodeCopy.bash99e9d7b4f994d997fbc9a35154553de50811053b1650580569000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduRenaming directory to be consistant with other repos. 2022-04-21 17:36:09 -050099e9d7b4f994d997fbc9a35154553de50811053bRenaming directory to be consistant with other repos.deletejenkins_tests/e3smClubbCodeCopy/e3smClubbCodeCopy.bashpdf_utilities.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90027ddbb31fdc89dc29b576b69ae24dcc7cb5b7901650918954000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVarious simple changes to improve performance. All bit-for-bit. 2022-04-25 15:35:54 -0500027ddbb31fdc89dc29b576b69ae24dcc7cb5b790Various simple changes to improve performance. All bit-for-bit.editpdf_closure_module.F90editpdf_utilities.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F909fbc4c9718f0b333f1cfb08f5b2a134fcd8490701650919440000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into calc_stability_correction. 2022-04-25 15:44:00 -05009fbc4c9718f0b333f1cfb08f5b2a134fcd849070Pushing loop into calc_stability_correction.editadvance_helper_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90advance_xp2_xpyp_module.F90587b19ef35eacdfa7924ed4c18aa9efd0125e6331650992705000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix. 2022-04-26 12:05:05 -0500587b19ef35eacdfa7924ed4c18aa9efd0125e633Small bug fix.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90f6bb40b687635af5c4c333c02024c3fea93be31d1650994055000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAnother similar small bug fix. 2022-04-26 12:27:35 -0500f6bb40b687635af5c4c333c02024c3fea93be31dAnother similar small bug fix.editadvance_xp2_xpyp_module.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilejenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilefcea57c038df1eb5c16d94c512840557cbb0e82f1651011096000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduAdding in comments to explain confusing parts of the Jenkinsfiles. 2022-04-26 17:11:36 -0500fcea57c038df1eb5c16d94c512840557cbb0e82fAdding in comments to explain confusing parts of the Jenkinsfiles.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileeditjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfileadvance_clubb_core_module.F90advance_wp2_wp3_module.F90e2ec97eca0f3244643d61e5d258d7341d579b9ad1651606634000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGunthers branch (#999) * Reworking the flow to make it good. * Cleaning up. * Pushing loop into advance_xp2_wpxp. * Forgot to commit advance_clubb_core. * Slight improvement to logic of lhs_diff_zm_crank calculation, and fixing stats but present when lhs_diff_zm_crank=true. * Pushing lots of loops down. * Changing dimension ordering. * Cleaning up. This completes advance_wp2_wp3. larson-group/clubb#972 * Changing capitalization of intents. 2022-05-03 14:37:14 -0500e2ec97eca0f3244643d61e5d258d7341d579b9adGunthers branch (#999)editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90mixing_length.F90advance_helper_module.F90592d69e2936ee8ce9c706d21a606fe2ed89c5a7f1651762515000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comRenamed smth_range to heaviside_smth_range 2022-05-05 09:55:15 -0500592d69e2936ee8ce9c706d21a606fe2ed89c5a7fRenamed smth_range to heaviside_smth_rangeeditmixing_length.F90editadvance_helper_module.F90stats_sfc_module.F90stats_variables.F90stats_clubb_utilities.F90advance_helper_module.F90c9ccb33dd2dd17ed51136d49262370f980d34efa1651762515000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comAdded tot_vartn_normlzd statistics. Renamed sclr in advance_helper_module to scalar to be more consistent with clubb naming schemes. 2022-05-05 09:55:15 -0500c9ccb33dd2dd17ed51136d49262370f980d34efaAdded tot_vartn_normlzd statistics. Renamed sclr in advance_helper_module to scalar to be more consistent with clubb naming schemes.editstats_sfc_module.F90editstats_variables.F90editadvance_helper_module.F90editstats_clubb_utilities.F90stats_variables.F90stats_clubb_utilities.F90stats_sfc_module.F90e68c14bd04dd6715f4eead46f5252b1cae3d909e1651762515000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comImplemented three further normalized variation stats. Included a (most likely temporary) check because in a few cases, denominator for normalization would be 0. 2022-05-05 09:55:15 -0500e68c14bd04dd6715f4eead46f5252b1cae3d909eImplemented three further normalized variation stats. Included a (most likely temporary) check because in a few cases, denominator for normalization would be 0.editstats_variables.F90editstats_sfc_module.F90editstats_clubb_utilities.F90stats_clubb_utilities.F9036748fbe6efa8a82b6c846fc8ec914e90114bdfb1651762515000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comChanged priorities of total normalized variation stats, included error handling in total normalized variation stats. 2022-05-05 09:55:15 -050036748fbe6efa8a82b6c846fc8ec914e90114bdfbChanged priorities of total normalized variation stats, included error handling in total normalized variation stats.editstats_clubb_utilities.F90stats_clubb_utilities.F9028fb91ccebb1790cc90b29cc7fe8b0b211b727eb1651762515000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comRenamed pdf_output_filename. Added grid_level constant to avoid magic numbers in stats_update_var_pt calls. 2022-05-05 09:55:15 -050028fb91ccebb1790cc90b29cc7fe8b0b211b727ebRenamed pdf_output_filename. Added grid_level constant to avoid magic numbers in stats_update_var_pt calls.editstats_clubb_utilities.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90advance_windm_edsclrm_module.F90advance_helper_module.F908b65b741ae34ba9ef8287f3fcafd627092d4ba131651782038000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGunthers branch 2 (#1002) * Pushing loop down through advance_windm. Other files needed to be touched because they were using a simple function, xpwp_func, which has been replaced in relevenant places by the few lines of code it takes to do. * Cleaned up intents * Moving xpwp calcuations back to procedure, but making procedure a 1/2D interface in advance helper. Other various small tweaks as well. 2022-05-05 15:20:38 -05008b65b741ae34ba9ef8287f3fcafd627092d4ba13Gunthers branch 2 (#1002)editadvance_clubb_core_module.F90editadvance_helper_module.F90editclubb_api_module.F90editsetup_clubb_pdf_params.F90editadvance_windm_edsclrm_module.F90stats_clubb_utilities.F90488bf543bb77e0f48a1958074bd8d468f4421f761651782218000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comBugfix for merge #1000. stderr was not imported in stat_clubb_utilities.F90, causing compilation to fail. 2022-05-05 15:23:38 -0500488bf543bb77e0f48a1958074bd8d468f4421f76Bugfix for merge #1000. stderr was not imported in stat_clubb_utilities.F90, causing compilation to fail.editstats_clubb_utilities.F90mixing_length.F90advance_helper_module.F90612b58c17db79d410f0d7c183c582f38d1ccb1b51652459498000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comAdded ability to apply smooth min max functions in mixing_length.F90 2022-05-13 11:31:38 -0500612b58c17db79d410f0d7c183c582f38d1ccb1b5Added ability to apply smooth min max functions in mixing_length.F90editadvance_helper_module.F90editmixing_length.F90advance_helper_module.F902d9fdafb4596ebd4063d961bc3d1b18c0dbcff3d1652459498000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comUpdated deprecated documentation of smooth min and max functions in advance_helper_module.F90. https://github.com/larson-group/clubb/issues/965 2022-05-13 11:31:38 -05002d9fdafb4596ebd4063d961bc3d1b18c0dbcff3dUpdated deprecated documentation of smooth min and max functions in advance_helper_module.F90. https://github.com/larson-group/clubb/issues/965editadvance_helper_module.F90mixing_length.F90advance_helper_module.F90f050454be526c9ec53c1d5445ba5ea554477010c1652459498000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comChecked whether results really are identical even with round-off when we have l_smooth_min_max=T and smooth_min_max_mag=zero. Next commit rolls some of these changes back for merge into master. https://github.com/larson-group/clubb/issues/965 2022-05-13 11:31:38 -0500f050454be526c9ec53c1d5445ba5ea554477010cChecked whether results really are identical even with round-off when we have l_smooth_min_max=T and smooth_min_max_mag=zero. Next commit rolls some of these changes back for merge into master. https://github.com/larson-group/clubb/issues/965editadvance_helper_module.F90editmixing_length.F90mixing_length.F90d540581ca5c6736c20a89d3b168cd0048f6bf3a21652459498000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comAdded test cases to smooth_min_max_tests.F90 and updated documentation. 2022-05-13 11:31:38 -0500d540581ca5c6736c20a89d3b168cd0048f6bf3a2Added test cases to smooth_min_max_tests.F90 and updated documentation.editmixing_length.F90diagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.pyaf8ea20a1dc96e793ed3d8d68e617ae194d1cd741653510931000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMade an update to use an optional (false by default) seasonal discontinuous December so you can use runs that go an exact number of years. Also fixed a small bug. 2022-05-25 15:35:31 -0500af8ea20a1dc96e793ed3d8d68e617ae194d1cd74Made an update to use an optional (false by default) seasonaleditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/function_cal_mean.pypostprocessing/run_e3sm_diags_modelvmodel.py549ec4ccf330935265a6e2602d745b3dff4108231653511048000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a E3SM diags run script that is set up for model vs. model comparisons. 2022-05-25 15:37:28 -0500549ec4ccf330935265a6e2602d745b3dff410823Added a E3SM diags run script that is set up for model vs. modeladdpostprocessing/run_e3sm_diags_modelvmodel.pysilhs_api_module.F90latin_hypercube_driver_module.F90f6c58abafbfc4b18957f9eedff60deeb321bad321653690057000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comConstructing rcm within SILHS (as rcm_pdf) (#1011) * Constructing rcm within SILHS (as rcm_pdf) to avoid having to pass rcm directly to SILHS. Relevant to possibly moving PDF call placement into the "post" position in CAM. See https://github.com/ESCOMP/CAM/issues/582. * Reconstructing rcm inside of setup_pdf_parameters instead of passing it through the argument lists. Might help NCAR move the PDF call placement to "post" position in CAM. See https://github.com/larson-group/clubb/issues/997. * Adding descriptive comment. 2022-05-27 16:20:57 -0600f6c58abafbfc4b18957f9eedff60deeb321bad32Constructing rcm within SILHS (as rcm_pdf) (#1011)editlatin_hypercube_driver_module.F90editsilhs_api_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90e3cdb98eb6cc532f8ef187f2d1cc56481a75d1f51653690057000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comConstructing rcm within SILHS (as rcm_pdf) (#1011) * Constructing rcm within SILHS (as rcm_pdf) to avoid having to pass rcm directly to SILHS. Relevant to possibly moving PDF call placement into the "post" position in CAM. See https://github.com/ESCOMP/CAM/issues/582. * Reconstructing rcm inside of setup_pdf_parameters instead of passing it through the argument lists. Might help NCAR move the PDF call placement to "post" position in CAM. See https://github.com/larson-group/clubb/issues/997. * Adding descriptive comment. 2022-05-27 16:20:57 -0600e3cdb98eb6cc532f8ef187f2d1cc56481a75d1f5Constructing rcm within SILHS (as rcm_pdf) (#1011)editclubb_api_module.F90editsetup_clubb_pdf_params.F90components/eam/src/physics/cam/subcol_SILHS.F90460c6f4aa612051300d03dce1823778ded4e33831653690209000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/commit/e4f125ba067ba8083f917e0e06b6b2398483d3e4. 2022-05-27 17:23:29 -0500460c6f4aa612051300d03dce1823778ded4e3383Updating for changes to CLUBB. See https://github.com/larson-group/clubb/commit/e4f125ba067ba8083f917e0e06b6b2398483d3e4.editcomponents/eam/src/physics/cam/subcol_SILHS.F90clubb_api_module.F90clip_explicit.F90advance_xm_wpxp_module.F90stats_type_utilities.F90grid_class.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90mixing_length.F90new_tsdadg_pdf.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90LY93_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90numerical_check.F90pos_definite_module.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90advance_xp3_module.F90fill_holes.F90stats_clubb_utilities.F90db5164bb7ed0c78ce4f06f92e7bf6118d10addf31654031468000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAlmost final loop pushes (#1012) * Pushing loop into clip_rcm * Pushing column loop into trapezoid routines. * Pushing column loop into clip_covar routines. * Pushing column loop into clip_variance and clip_skewness. * Replacing sgn_turbulent_velocity with built in fortran sign * Removing gr from argument list of stats calls, replacing with just nz * Replacing some usages of gr with just the number of vertical levels * Replacing some usages of gr with just the number of vertical levels again * Missed a couple files to commit * Pushing some loops and removing need for gr to be passed into some routines. * Pushing loop into advance_xp3 * Pushing loop into mixing length * Some more loop pushing * Pushing some loops into mono_flux limit, skipping the lhs routine since it's a bit tricky at the moment, will do after change to grid class. * Removing gr from argument list of stats accumulate * Precalculating zt2zm so that we can use 2d version * Precalculating um/vm ddzt so that we can use 2d version * Precalculating things to use 2d version of zt2zm * Making 2d version of cubic interp for grid class * Small modifications to sponge damping code argument lists * Renaming some variables 2022-05-31 16:11:08 -0500db5164bb7ed0c78ce4f06f92e7bf6118d10addf3Almost final loop pushes (#1012)editstats_type_utilities.F90editclubb_api_module.F90editsetup_clubb_pdf_params.F90editstats_clubb_utilities.F90editclip_explicit.F90editfill_holes.F90editpos_definite_module.F90editnew_pdf_main.F90editmixing_length.F90editadvance_clubb_core_module.F90editgrid_class.F90editadg1_adg2_3d_luhar_pdf.F90editnew_hybrid_pdf_main.F90editnew_tsdadg_pdf.F90editpdf_closure_module.F90editadvance_windm_edsclrm_module.F90editnumerical_check.F90editadvance_xm_wpxp_module.F90editturbulent_adv_pdf.F90editadvance_xp3_module.F90editnew_pdf.F90editsponge_layer_damping.F90editmono_flux_limiter.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90editLY93_pdf.F90components/eam/src/physics/cam/clubb_intr.F90448eb802d2930cd7bc3776ac409ab9cf6be85e511654040774000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-05-31 18:46:14 -0500448eb802d2930cd7bc3776ac409ab9cf6be85e51Making compatible with latest clubb change.editcomponents/eam/src/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90pdf_parameter_module.F90new_hybrid_pdf_main.F90new_pdf_main.F90113beb1ec6663fcef3f6bb75c7ee971ab3c0fa451654040788000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMaking pdf_implicit_coefs_terms a type containing 2D arrays. (#1014) 2022-05-31 18:46:28 -0500113beb1ec6663fcef3f6bb75c7ee971ab3c0fa45Making pdf_implicit_coefs_terms a type containing 2D arrays. (#1014)editpdf_closure_module.F90editclubb_api_module.F90editpdf_parameter_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editnew_hybrid_pdf_main.F90editadvance_xp2_xpyp_module.F90editnew_pdf_main.F90new_pdf_main.F90new_hybrid_pdf_main.F907bc6f76ec8b70bc1789f90b554dca47122c400011654112656000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe G_unit tests never allocated pdf_implicit_coefs_terms. It's unclear to me how these were working before, but it seems that something about making these 2D allocatable arrays exposed the bug. 2022-06-01 14:44:16 -05007bc6f76ec8b70bc1789f90b554dca47122c40001The G_unit tests never allocated pdf_implicit_coefs_terms. It's unclear to me how these were working before, but it seems that something about making these 2D allocatable arrays exposed the bug.editnew_pdf_main.F90editnew_hybrid_pdf_main.F90advance_xp2_xpyp_module.F90de73c4eefaee2b50045b4f5e706868e84b0f45501654117361000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking zt2zm calls with pdf_implicit_coefs_terms use the 2D version. 2022-06-01 16:02:41 -0500de73c4eefaee2b50045b4f5e706868e84b0f4550Making zt2zm calls with pdf_implicit_coefs_terms use the 2D version.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F903643c78f6fe2260f971bba96ead125858b665f1c1654122180000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving setup_grid and setup_parameters functionality from setup_clubb_core. This is beacuse in host models the required grid information may not be known during the setup process, resulting in dummy arguments for setup_clubb_core and the grid and paramters being setup during runtime anyway. Now, in the host models we can call these subroutines immediately after setup_clubb_core to maintain identical functionality (sam, wrf), and in others we can wait to call these until the main timestepping procedure (cam,e3sm). 2022-06-01 17:23:00 -05003643c78f6fe2260f971bba96ead125858b665f1cRemoving setup_grid and setup_parameters functionality from setup_clubb_core. This is beacuse in host models the required grid information may not be known during the setup process, resulting in dummy arguments for setup_clubb_core and the grid and paramters being setup during runtime anyway. Now, in the host models we can call these subroutines immediately after setup_clubb_core to maintain identical functionality (sam, wrf), and in others we can wait to call these until the main timestepping procedure (cam,e3sm).editadvance_clubb_core_module.F90editclubb_api_module.F90components/eam/src/physics/cam/clubb_intr.F90b83d1400dc7bf7fe79743ed57362827f37e7ee8c1654122237000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-06-01 17:23:57 -0500b83d1400dc7bf7fe79743ed57362827f37e7ee8cMaking compatible with latest clubb change.editcomponents/eam/src/physics/cam/clubb_intr.F90grid_class.F90parameters_tunable.F90clubb_api_module.F90c623b91a9bf812b85b51b575233ad00e8b98f16c1654129942000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking 2D versions of setup_grid and setup_parameters. 2022-06-01 19:32:22 -0500c623b91a9bf812b85b51b575233ad00e8b98f16cMaking 2D versions of setup_grid and setup_parameters.editclubb_api_module.F90editgrid_class.F90editparameters_tunable.F90mixing_length.F90parameters_tunable.F90advance_clubb_core_module.F90clubb_api_module.F9069aaa53016d97c134fc63c8ebc1a7c029d2b60741654197815000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking lmin a scalar again, twas a mistake to make it an array, it can only take on one value. 2022-06-02 14:23:35 -050069aaa53016d97c134fc63c8ebc1a7c029d2b6074Making lmin a scalar again, twas a mistake to make it an array, it can only take on one value.editclubb_api_module.F90editparameters_tunable.F90editadvance_clubb_core_module.F90editmixing_length.F90components/eam/src/physics/cam/clubb_intr.F908b0f71a6f18f6ddfd8c8de2c6bce246ab0fca7631654197852000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-06-02 14:24:12 -05008b0f71a6f18f6ddfd8c8de2c6bce246ab0fca763Making compatible with latest clubb change.editcomponents/eam/src/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90advance_windm_edsclrm_module.F9002455edff630a52bd333d2b0013748e4bce7e9ff1654200656000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking nu_vert_res_dep a type containing arrays, as opposed to being an array of types. 2022-06-02 15:10:56 -050002455edff630a52bd333d2b0013748e4bce7e9ffMaking nu_vert_res_dep a type containing arrays, as opposed to being an array of types.editclubb_api_module.F90editparameters_tunable.F90editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90components/eam/src/physics/cam/clubb_intr.F90cc23bb726a760eb04a42acaa91c4e30fec071cbf1654200674000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-06-02 15:11:14 -0500cc23bb726a760eb04a42acaa91c4e30fec071cbfMaking compatible with latest clubb change.editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F9017d762ec52afd84081ff111eb5dc0cec7edef6741654282022000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small bug preventing compilation. 2022-06-03 13:47:02 -050017d762ec52afd84081ff111eb5dc0cec7edef674Fixing small bug preventing 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Hueblerhttp://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrnhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false68http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/68/66http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/66/BRANCHorigin/clubb_silhs_develTESTe3sm_ne4_silhs_run_gfortran_testStarted by user 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Also changed the ne4 test to display logs in the post 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the samxx code. It passes standalone tests. 2020-08-25 11:56:08 -0700a7e14b0a08a197417efc37f1b74f3d7e7e24af8bPopulating the samxx code. It passes standalone tests.addcomponents/cam/src/physics/crm/samxx/bound_exchange.haddcomponents/cam/src/physics/crm/samxx/press_grad.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90addcomponents/cam/src/physics/crm/samxx/microphysics.cppaddcomponents/cam/src/physics/crm/samxx/fortran/random.F90addcomponents/cam/src/physics/crm/samxx/fortran/advect_all_scalars.F90addcomponents/cam/src/physics/crm/samxx/kurant.haddcomponents/cam/src/physics/crm/samxx/test/build/download_data.shaddcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppaddcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar3D.F90addcomponents/cam/src/physics/crm/samxx/fortran/ice_fall.F90addcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppaddcomponents/cam/src/physics/crm/samxx/test/utils.haddcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90addcomponents/cam/src/physics/crm/samxx/periodic.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod3D.F90addcomponents/cam/src/physics/crm/samxx/test/build/README.mdaddcomponents/cam/src/physics/crm/samxx/crm_input_module.F90addcomponents/cam/src/physics/crm/samxx/README.mdaddcomponents/cam/src/physics/crm/samxx/precip_proc.haddcomponents/cam/src/physics/crm/samxx/setparm.cppaddcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shaddcomponents/cam/src/physics/crm/samxx/fortran/buoyancy.F90addcomponents/cam/src/physics/crm/samxx/fortran/crmsurface.F90addcomponents/cam/src/physics/crm/samxx/crm.cppaddcomponents/cam/src/physics/crm/samxx/fortran/sat.F90addcomponents/cam/src/physics/crm/samxx/crm_state_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_proc.F90addcomponents/cam/src/physics/crm/samxx/fortran/fft.F90addcomponents/cam/src/physics/crm/samxx/fortran/pressure.F90addcomponents/cam/src/physics/crm/samxx/fortran/uvw.F90addcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppaddcomponents/cam/src/physics/crm/samxx/diagnose.haddcomponents/cam/src/physics/crm/samxx/zero.cppaddcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90addcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90addcomponents/cam/src/physics/crm/samxx/advect_mom.haddcomponents/cam/src/physics/crm/samxx/fortran/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/samxx/setperturb.haddcomponents/cam/src/physics/crm/samxx/test/build/runtest.shaddcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/cloud.F90addcomponents/cam/src/physics/crm/samxx/fortran/adams.F90addcomponents/cam/src/physics/crm/samxx/fortran/domain.F90addcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/adams.cppaddcomponents/cam/src/physics/crm/samxx/fortran/RNG_MT.F90addcomponents/cam/src/physics/crm/samxx/precip_init.haddcomponents/cam/src/physics/crm/samxx/params.F90addcomponents/cam/src/physics/crm/samxx/crmsurface.haddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/tke_full.F90addcomponents/cam/src/physics/crm/samxx/damping.cppaddcomponents/cam/src/physics/crm/samxx/advect_scalar2D.haddcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppaddcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppaddcomponents/cam/src/physics/crm/samxx/zero.haddcomponents/cam/src/physics/crm/samxx/pre_timeloop.haddcomponents/cam/src/physics/crm/samxx/bound_duvdt.haddcomponents/cam/src/physics/crm/samxx/periodic.haddcomponents/cam/src/physics/crm/samxx/test/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/test/build/nccmp3.pyaddcomponents/cam/src/physics/crm/samxx/test/fortran2d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/task_init.haddcomponents/cam/src/physics/crm/samxx/fortran/forcing.F90addcomponents/cam/src/physics/crm/samxx/fortran/bound_exchange.F90addcomponents/cam/src/physics/crm/samxx/fortran/boundaries.F90addcomponents/cam/src/physics/crm/samxx/abcoefs.cppaddcomponents/cam/src/physics/crm/samxx/diffuse_scalar.haddcomponents/cam/src/physics/crm/samxx/timeloop.haddcomponents/cam/src/physics/crm/samxx/cloud.haddcomponents/cam/src/physics/crm/samxx/accelerate_crm.haddcomponents/cam/src/physics/crm/samxx/fortran/crmdims.F90addcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar3D.F90addcomponents/cam/src/physics/crm/samxx/setperturb.cppaddcomponents/cam/src/physics/crm/samxx/press_rhs.haddcomponents/cam/src/physics/crm/samxx/fortran/bound_duvdt.F90addcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppaddcomponents/cam/src/physics/crm/samxx/fortran/task_util_NOMPI.F90addcomponents/cam/src/physics/crm/samxx/coriolis.haddcomponents/cam/src/physics/crm/samxx/fortran/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/fortran/task_init.F90addcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.haddcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90addcomponents/cam/src/physics/crm/samxx/advect_scalar.cppaddcomponent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onents/cam/src/physics/crm/samxx/fortran/periodic.F90addcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90addcomponents/cam/src/physics/crm/samxx/kurant.cppaddcomponents/cam/src/physics/crm/samxx/precip_proc.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90addcomponents/cam/src/physics/crm/samxx/fortran/utils.F90addcomponents/cam/src/physics/crm/samxx/crmdims.F90addcomponents/cam/src/physics/crm/samxx/buoyancy.haddcomponents/cam/src/physics/crm/samxx/cloud.cppaddcomponents/cam/src/physics/crm/samxx/setparm.haddcomponents/cam/src/physics/crm/samxx/fortran/advect2_mom_z.F90addcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90addcomponents/cam/src/physics/crm/samxx/fortran/vars.F90addcomponents/cam/src/physics/crm/samxx/fft.F90addcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.haddcomponents/cam/src/physics/crm/samxx/fortran/accelerate_crm.F90addcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar.F90addcomponents/cam/src/physics/crm/samxx/precip_init.cppaddcomponents/cam/src/physics/crm/samxx/fortran/setparm.F90addcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shaddcomponents/cam/src/physics/crm/samxx/post_timeloop.haddcomponents/cam/src/physics/crm/samxx/fortran/crm_output_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/ecppvars.F90addcomponents/cam/src/physics/crm/samxx/ice_fall.haddcomponents/cam/src/physics/crm/samxx/fortran/kurant.F90addcomponents/cam/src/physics/crm/samxx/buoyancy.cppaddcomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.shaddcomponents/cam/src/physics/crm/samxx/test/build/nccmp.pyaddcomponents/cam/src/physics/crm/samxx/vars.haddcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90addcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppaddcomponents/cam/src/physics/crm/samxx/fortran/press_rhs.F90addcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advection.F90.gitmodulesexternals/YAKLaeff45f6b98f3181033f5bc83fcf9e1d7595f62b1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdding YAKL submodule 2020-08-25 11:56:08 -0700aeff45f6b98f3181033f5bc83fcf9e1d7595f62bAdding YAKL submoduleedit.gitmodulesaddexternals/YAKLexternals/YAKL27371af168d192346b27cba84048ddb422fcbe4b1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govYAKL fix 2020-08-25 11:56:08 -070027371af168d192346b27cba84048ddb422fcbe4bYAKL fixeditexternals/YAKLcomponents/cam/bld/configurecomponents/cam/src/physics/crm/samxx/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/cime_config/config_component.xml3a8fde5fe4173765bec8c89d3e20129b66224d7e1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govMaking it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older README 2020-08-25 11:56:08 -07003a8fde5fe4173765bec8c89d3e20129b66224d7eMaking it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older READMEeditcomponents/cam/src/physics/crm/samxx/README.mdeditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/cime_config/config_component.xmleditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sheditcomponents/cam/src/physics/crm/samxx/test/build/README.mdeditcomponents/cam/bld/configureeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cmake/common_setup.cmakecomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/cime_config/config_compsets.xml9552b8042a0236ec31666d6e022afee67f5abd1d1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking toward adding -crm samxx as an option 2020-08-25 11:56:08 -07009552b8042a0236ec31666d6e022afee67f5abd1dWorking toward adding -crm samxx as an optioneditcomponents/cmake/build_model.cmakeeditcomponents/cam/cime_config/config_compsets.xmladdcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/common_setup.cmakecomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/crmdims.F90components/cam/src/physics/crm/crm_ecpp_output_module.F90components/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/crm_state_module.F90components/cam/src/physics/crm/samxx/crm_output_module.F90components/cam/src/physics/crm/crm_state_module.F90components/cam/src/physics/crm/samxx/crmdims.F90components/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90components/cam/src/physics/crm/crm_output_module.F90components/cam/src/physics/crm/samxx/crm_input_module.F90components/cmake/build_model.cmakecomponents/cam/src/physics/crm/sam/openacc_utils.F90components/cam/src/physics/crm/crm_input_module.F90components/cam/src/physics/crm/sam/params.F90components/cam/src/physics/crm/sam/crm_ecpp_output_module.F90components/cam/src/physics/crm/sam/crm_state_module.F90components/cam/src/physics/crm/openacc_utils.F90components/cam/src/physics/crm/sam/crm_output_module.F90components/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/samxx/crm_rad_module.F90components/cam/bld/config_files/definition.xmlcomponents/cam/src/physics/crm/sam/crm_rad_module.F90components/cam/src/physics/crm/sam/crm_input_module.F9098b29355f3e82a4eb04d4423aec0fe1e5ffc9f831598381769000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govsamxx and yakl are building. Working through decoupling crm_physics and sam still. 2020-08-25 11:56:09 -070098b29355f3e82a4eb04d4423aec0fe1e5ffc9f83samxx and yakl are building. Working through decoupling crm_physics and sam still.deletecomponents/cam/src/physics/crm/samxx/crm_output_module.F90deletecomponents/cam/src/physics/crm/sam/crm_output_module.F90deletecomponents/cam/src/physics/crm/sam/openacc_utils.F90addcomponents/cam/src/physics/crm/crm_state_module.F90deletecomponents/cam/src/physics/crm/samxx/crmdims.F90editcomponents/cam/bld/config_files/definition.xmldeletecomponents/cam/src/physics/crm/sam/crm_rad_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_state_module.F90editcomponents/cmake/build_model.cmakedeletecomponents/cam/src/physics/crm/samxx/crm_rad_module.F90addcomponents/cam/src/physics/crm/crm_rad_module.F90deletecomponents/cam/src/physics/crm/sam/crm_state_module.F90editcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/crmdims.F90deletecomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90editcomponents/cam/src/physics/crm/sam/params.F90addcomponents/cam/src/physics/crm/crm_output_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_input_module.F90addcomponents/cam/src/physics/crm/openacc_utils.F90deletecomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/crm_ecpp_output_module.F90deletecomponents/cam/src/physics/crm/sam/crm_input_module.F90addcomponents/cam/src/physics/crm/crm_input_module.F90components/cam/src/physics/crm/params_kind.F9060f956f10ed18ec1430e74fe625b0057711964201598381769000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govForgot to add params_kind.F90 2020-08-25 11:56:09 -070060f956f10ed18ec1430e74fe625b005771196420Forgot to add params_kind.F90addcomponents/cam/src/physics/crm/params_kind.F90externals/YAKLcomponents/cam/bld/configurecomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/crm_physics.F90a1e9cf895865113295f1d812c52dddfc4fba04761598382676000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govThe model builds with samxx on the CPU now 2020-08-25 12:11:16 -0700a1e9cf895865113295f1d812c52dddfc4fba0476The model builds with samxx on the CPU noweditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/bld/configureeditexternals/YAKLeditcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/sam/params.F90components/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/crm.cpp56e08e7504757b6b5b16416c741ccac46fcfaa3d1598383078000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChanged sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runs 2020-08-25 12:17:58 -070056e08e7504757b6b5b16416c741ccac46fcfaa3dChanged sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runseditcomponents/cam/src/physics/crm/sam/accelerate_crm.F90editcomponents/cam/src/physics/crm/sam/params.F90editcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/samxx/crmsurface.hcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90components/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90components/cam/src/physics/crm/samxx/fortran/crmsurface.F90components/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90components/cam/src/physics/crm/samxx/crmsurface.cppcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90components/cam/src/physics/crm/samxx/samxx_const.h1bd6099045236ed2c11eceab8d8a90e3f25bdc351598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -07001bd6099045236ed2c11eceab8d8a90e3f25bdc35Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90editcomponents/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txteditcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90editcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90editcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90editcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txteditcomponents/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90editcomponents/cam/src/physics/crm/samxx/fortran/crmsurface.F90editcomponents/cam/src/physics/crm/samxx/samxx_const.hcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90components/cam/src/physics/crm/samxx/fortran/params.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90components/cam/src/physics/crm/samxx/fortran/pressure.F90components/cam/src/physics/crm/samxx/fortran/periodic.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90164d0e8dbdd801f2d549c076687902609631b0921598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -0700164d0e8dbdd801f2d549c076687902609631b092Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90editcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90editcomponents/cam/src/physics/crm/samxx/fortran/periodic.F90editcomponents/cam/src/physics/crm/samxx/fortran/pressure.F90editcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90editcomponents/cam/src/physics/crm/samxx/fortran/params.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90editcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90components/cam/src/physics/crm/samxx/fortran/task_init.F90components/cam/src/physics/crm/samxx/fortran/vars.F9050ed9dac3dca1c6b32c74db6862df86e3e1d46c91598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -070050ed9dac3dca1c6b32c74db6862df86e3e1d46c9Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/fortran/task_init.F90editcomponents/cam/src/physics/crm/samxx/fortran/vars.F90externals/YAKLcomponents/cam/src/physics/crm/samxx/setperturb.cppcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcd045d772cea3c0ae5dafd7aa7b72c1dca1b81471598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govUsing original FFTs. standalone has machine precision similarity 2020-08-25 12:17:59 -0700cd045d772cea3c0ae5dafd7aa7b72c1dca1b8147Using original FFTs. standalone has machine precision similarityeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/cime_config/config_component.xmlcomponents/cam/cime_config/config_compsets.xmlcomponents/cam/src/physics/crm/crm_physics.F904d2adb941c5cb0e52d9723aba7228f088f6fc63c1598383372000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix F-MMFXX compset modified: components/cam/cime_config/config_component.xml modified: components/cam/cime_config/config_compsets.xml modified: components/cam/src/physics/crm/crm_physics.F90 2020-08-25 12:22:52 -07004d2adb941c5cb0e52d9723aba7228f088f6fc63cFix F-MMFXX compseteditcomponents/cam/cime_config/config_component.xmleditcomponents/cam/cime_config/config_compsets.xmleditcomponents/cam/src/physics/crm/crm_physics.F90components/cmake/build_model.cmake.gitmodulesexternals/cubcime_config/machines/config_batch.xmlcime_config/machines/config_machines.xmlcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/pressure.cppcime_config/machines/config_compilers.xml326743b6ad7d665631e3d8fe4127e2f278e63a5e1598383665000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking on a hardwired approach to GPU for now. As always, CMake is a dumpster fire. 2020-08-25 12:27:45 -0700326743b6ad7d665631e3d8fe4127e2f278e63a5eWorking on a hardwired approach to GPU for now. As always, CMake is a dumpster fire.editcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakeaddexternals/cubedit.gitmoduleseditcime_config/machines/config_machines.xmleditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcime_config/machines/config_batch.xmleditcime_config/machines/config_compilers.xmlcomponents/cmake/build_model.cmake72dcd398493ac3939b16dc851f637c4a60fb35221598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govrestricting new stuff to when gnugpu is used 2020-08-25 12:27:46 -070072dcd398493ac3939b16dc851f637c4a60fb3522restricting new stuff to when gnugpu is usededitcomponents/cmake/build_model.cmakecomponents/cmake/common_setup.cmakeexternals/YAKLcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecomponents/CMakeLists.txt96fc19e1925eda69d1317607514cb1d40988c6dc1598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govCUDA build works currently. Simulation seems to run successfully. Answer looks good. 2020-08-25 12:27:46 -070096fc19e1925eda69d1317607514cb1d40988c6dcCUDA build works currently. Simulation seems to run successfully. Answer looks good.editcomponents/cmake/common_setup.cmakeeditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakeeditcomponents/CMakeLists.txtcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/common_setup.cmake8265b1f3a1cbe4b6a94880204eaa55bc7bb6afa11598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdd comments, wrap CUDA_FLAGS sm_70 in a test for the summit machine 2020-08-25 12:27:46 -07008265b1f3a1cbe4b6a94880204eaa55bc7bb6afa1Add comments, wrap CUDA_FLAGS sm_70 in a test for the summit machineeditcomponents/cmake/build_model.cmakeeditcomponents/cmake/common_setup.cmakeeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/CMakeLists.txt15c6ecc5e058f6b9c6d89eac164e8f801ff0a3d11598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFound a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xml 2020-08-25 12:30:18 -070015c6ecc5e058f6b9c6d89eac164e8f801ff0a3d1Found a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xmleditcomponents/CMakeLists.txteditcime_config/machines/config_compilers.xmleditcomponents/cmake/build_model.cmakecomponents/CMakeLists.txt54d5682deb9f03f245ff8555480ab5fb6f46b9d81598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govA change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txt 2020-08-25 12:30:18 -070054d5682deb9f03f245ff8555480ab5fb6f46b9d8A change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txteditcomponents/CMakeLists.txtcomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90components/cam/src/physics/crm/crm_ecpp_output_module.F90components/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F909fa6e6c50fd066d510316378b83b9771c93d3c341598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRemoving a few duplicate summit gnugpu entries in config_compilers.xml. Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why. 2020-08-25 12:30:18 -07009fa6e6c50fd066d510316378b83b9771c93d3c34Removing a few duplicate summit gnugpu entries in config_compilers.xml. Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why.editcime_config/machines/config_compilers.xmladdcomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90editcomponents/cmake/build_model.cmakedeletecomponents/cam/src/physics/crm/crm_ecpp_output_module.F90components/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmake052b23d0bcf9eea737b18fcc2a7d8a45374f98d41598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead. 2020-08-25 12:30:18 -0700052b23d0bcf9eea737b18fcc2a7d8a45374f98d4Fixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead.editcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/fortran/atmosphere.F90components/cam/src/physics/crm/samxx/diagnose.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppcomponents/cam/src/physics/crm/samxx/press_grad.cppcomponents/cam/src/physics/crm/samxx/fft.F90components/cam/src/physics/crm/samxx/fortran/random.F90components/cam/src/physics/crm/samxx/precip_proc.cppcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/accelerate_crm.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppcomponents/cam/src/physics/crm/samxx/periodic.cppcomponents/cam/src/physics/crm/samxx/sgs.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/cam/src/physics/crm/samxx/tke_full.cppcomponents/cam/src/physics/crm/samxx/cloud.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppcomponents/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/precip_init.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/bound_duvdt.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/advect_scalar.cppcomponents/cam/src/physics/crm/samxx/fortran/fft.F90components/cam/src/physics/crm/samxx/press_rhs.cpp50ae95aca1a3b8ebce10a89d138d3cfb2d80d0601598383828000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govretabbing source files 2020-08-25 12:30:28 -070050ae95aca1a3b8ebce10a89d138d3cfb2d80d060retabbing source fileseditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/fortran/atmosphere.F90editcomponents/cam/src/physics/crm/samxx/fft.F90editcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90editcomponents/cam/src/physics/crm/samxx/fortran/random.F90editcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90editcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90editcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/fortran/fft.F90editcomponents/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/accelerate_crm.hcomponents/cam/src/physics/crm/samxx/cloud.hcomponents/cam/src/physics/crm/samxx/damping.hcomponents/cam/src/physics/crm/samxx/buoyancy.cppcomponents/cam/src/physics/crm/samxx/bound_duvdt.hcomponents/cam/src/physics/crm/samxx/diagnose.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppcomponents/cam/src/physics/crm/samxx/precip_init.hcomponents/cam/src/physics/crm/samxx/task_init.hcomponents/cam/src/physics/crm/samxx/zero.hcomponents/cam/src/physics/crm/samxx/setparm.cppcomponents/cam/src/physics/crm/samxx/crmsurface.cppcomponents/cam/src/physics/crm/samxx/boundaries.hcomponents/cam/src/physics/crm/samxx/press_rhs.hcomponents/cam/src/physics/crm/samxx/advect_mom.cppexternals/scorpiocomponents/cam/src/physics/crm/samxx/sgs.cppcomponents/cam/src/physics/crm/samxx/tke_full.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar.hcomponents/cam/src/physics/crm/samxx/bound_exchange.hcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppcomponents/cam/src/physics/crm/samxx/adams.hexternals/YAKLcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.hcomponents/cam/src/physics/crm/samxx/post_timeloop.hcomponents/cam/src/physics/crm/samxx/diagnose.hcomponents/cam/src/physics/crm/samxx/damping.cppcomponents/cam/src/physics/crm/samxx/kurant.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_z.hcomponents/cam/src/physics/crm/samxx/post_icycle.hcomponents/cam/src/physics/crm/samxx/microphysics.hcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/gammafff.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.hcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.hcomponents/cam/src/physics/crm/samxx/coriolis.hcomponents/cam/src/physics/crm/samxx/press_grad.hcomponents/cam/src/physics/crm/samxx/sgs.hcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppcomponents/cam/src/physics/crm/samxx/abcoefs.cppcomponents/cam/src/physics/crm/samxx/task_init.cppcomponents/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/pressure.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/advect_mom.hcomponents/cam/src/physics/crm/samxx/z0_est.hcomponents/cam/src/physics/crm/samxx/crm.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.hcomponents/cam/src/physics/crm/samxx/advect_scalar.hcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppcomponents/cam/src/physics/crm/samxx/periodic.hcomponents/cam/src/physics/crm/samxx/shear_prod2D.hcomponents/cam/src/physics/crm/samxx/advect_scalar.cppcomponents/cam/src/physics/crm/samxx/press_rhs.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.hcomponents/cam/src/physics/crm/samxx/ice_fall.cppcomponen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clang-format on the C++ code in samxx 2020-08-25 12:32:00 -070078d5d75f6381307e722f22155987309efd3125f3Using clang-format on the C++ code in 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cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.hcomponents/cam/src/physics/crm/samxx/periodic.cppcomponents/cam/src/physics/crm/samxx/forcing.hcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom.hcomponents/cam/src/physics/crm/samxx/uvw.cppcomponents/cam/src/physics/crm/samxx/tke_full.hcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/timeloop.hcomponents/cam/src/physics/crm/samxx/advect_scalar3D.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/ice_fall.hcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/setparm.hcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppc5883818ebbcff64e111b849521fca0c16c04c901598383920000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRevert "Using clang-format on the C++ code in samxx" This reverts commit f0c52b92c7a33b9dd922be6edab8d9940ae9cfd3. 2020-08-25 12:32:00 -0700c5883818ebbcff64e111b849521fca0c16c04c90Revert "Using clang-format on the C++ code in samxx"editcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/damping.heditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.heditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.heditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/rrtmgp/externaleditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.heditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.heditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/task_init.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.heditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/kurant.heditcomponents/cam/src/physics/crm/samxx/press_rhs.heditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/forcing.heditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/advect_mom.heditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/bound_duvdt.heditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.heditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/uvw.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/setparm.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.heditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.heditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/sgs.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/cam/src/phys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clang-format without all the submodules problems from before 2020-08-25 12:35:03 -0700977657ad839da9ed921ecf4dc52024a077efe4f9using clang-format without all the submodules problems from beforeeditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/forcing.heditcomponents/cam/src/physics/crm/samxx/press_rhs.heditcomponents/cam/src/physics/crm/samxx/damping.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.heditcomponents/cam/src/physics/crm/samxx/abcoefs.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.heditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.heditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/setperturb.heditcomponents/cam/src/physics/crm/samxx/tke_full.heditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/sgs.heditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/uvw.heditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/adams.heditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.heditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.heditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.heditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/timeloop.heditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/bound_duvdt.heditcomponents/cam/src/physics/crm/samxx/kurant.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.heditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/z0_est.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.c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cppcomponents/cam/src/physics/crm/samxx/forcing.hcomponents/cam/src/physics/crm/samxx/diffuse_mom.hcomponents/cam/src/physics/crm/samxx/uvw.cppcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/tke_full.hcomponents/cam/src/physics/crm/samxx/timeloop.hcomponents/cam/src/physics/crm/samxx/advect_scalar3D.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/ice_fall.hcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/setparm.hcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppd60827525c8c1e5a5fd8aea8ec918fcf3f2aeac31598384103000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRevert "using clang-format without all the submodules problems from before" This reverts commit 9bb6330a596edba0bfce5517eda1568e0a54aec5. 2020-08-25 12:35:03 -0700d60827525c8c1e5a5fd8aea8ec918fcf3f2aeac3Revert "using clang-format without all the submodules problems from before"editcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.heditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.heditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.heditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/abcoefs.heditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/bound_exchange.heditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.heditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.heditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/press_grad.heditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/advect_mom.heditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/setparm.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/uvw.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.heditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.heditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/adams.heditcomponents/cam/src/physics/crm/samxx/ice_fall.heditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.heditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/z0_est.heditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.heditcomponents/cam/src/physics/crm/samxx/press_rhs.heditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/damping.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physi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line length for samxx files 2020-08-25 12:35:03 -07003fa7de9d0dadeaecb18b9684e5a30b6bd604d197Reducing line length for samxx fileseditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppcomponents/cam/src/physics/crm/crm_physics.F90b7a211b97616c3f064ccfb44bcc78c38439a81c41598384103000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govbetter comment for MSA in crm_physics.F90 2020-08-25 12:35:03 -0700b7a211b97616c3f064ccfb44bcc78c38439a81c4better comment for MSA in crm_physics.F90editcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/crm.cpp4aca58bf066ffe75b42708345e0200b19181275a1598389550000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govApply MMF aerosol optics changes to samxx modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-08-25 14:05:50 -07004aca58bf066ffe75b42708345e0200b19181275aApply MMF aerosol optics changes to samxxeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/crm_physics.F90a9435b466dfddb9b7003fef62a80627853cfcb1d1598395772000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdjust ifdefs to fix odd build error 2020-08-25 15:49:32 -0700a9435b466dfddb9b7003fef62a80627853cfcb1dAdjust ifdefs to fix odd build erroreditcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/vars.h26e25b5facc5fa0e59625111501e0b9d2b8dcc211598399420000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix build errors modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-08-25 19:50:20 -040026e25b5facc5fa0e59625111501e0b9d2b8dcc21Fix build errorseditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/post_timeloop.cppb90ac68d1146634606286fbbbca413c15700d36b1598460505000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd averaging step for crm_clear_rh modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp 2020-08-26 12:48:25 -0400b90ac68d1146634606286fbbbca413c15700d36bAdd averaging step for crm_clear_rheditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/mpas-source37538d9090804a08b75161553fe47022b5b53bcf1598470149000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixes sea ice melt bug 2020-08-26 14:29:09 -050037538d9090804a08b75161553fe47022b5b53bcfUpdate mpas-source: fixes sea ice melt bugeditcomponents/mpas-sourcecomponents/cam/src/physics/crm/samxx/post_timeloop.cppd8c4ecafbf981ac62917d95e48b88925f17837521598479260000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd semi-colon 2020-08-26 18:01:00 -0400d8c4ecafbf981ac62917d95e48b88925f1783752Add semi-coloneditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakeexternals/YAKL348bd502756bc18c47f90aa16558e06dceca04b71598479381000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing a build issue with non-CUDA builds 2020-08-26 18:03:01 -0400348bd502756bc18c47f90aa16558e06dceca04b7Fixing a build issue with non-CUDA buildseditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakecomponents/homme/src/share/sl_advection.F90aa238a4e94015efb11cc75ef2d662c52d0aeed371598479673000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Fix number of levels in SL trajectory DSS. The DSS for the trajectory phase was exchanging one more level than necessary. Fix this. 2020-08-26 15:07:53 -0700aa238a4e94015efb11cc75ef2d662c52d0aeed37Homme: Fix number of levels in SL trajectory DSS.editcomponents/homme/src/share/sl_advection.F90components/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/post_icycle.cpp6c7d06dccd8ea189fbbd6020749bd65cfb46b35c1598482911000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comtypo fix 2020-08-26 19:01:51 -04006c7d06dccd8ea189fbbd6020749bd65cfb46b35ctypo fixeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/homme/src/share/gllfvremap_mod.F90622efb4baa6bca1efa3c957d6855c79aeab605421598485598000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Grid total area diagnostic data in simulations. Previously, grid total area diagnostic data were available only in unit tests. Make it runnable from a standard E3SM simulation. 2020-08-26 16:46:38 -0700622efb4baa6bca1efa3c957d6855c79aeab60542Homme: Grid total area diagnostic data in simulations.editcomponents/homme/src/share/gllfvremap_mod.F90components/homme/src/share/bndry_mod_base.F9029017cba1f6eacd025d40ea76b3c5f8441923bbb1598497629000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Fix a performance bug in boundary exchange. singlethread_copy was initialized to .false. at declaration, but that means once it's set to .true., it retains that value at next subroutine call. This was preventing the threaded copying to run. Fix this bug. 2020-08-26 20:07:09 -070029017cba1f6eacd025d40ea76b3c5f8441923bbbHomme: Fix a performance bug in boundary 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clm testmods to elm Rename elm/cime_config/testdefs/testmods_dirs/clm to elm/cime_config/testdefs/testmods_dirs/elm Also rename user_nl_clm to user_nl_elm 2020-08-26 23:07:46 -050009615590e8e160d023efeaa4ba2b3590d9d15390Rename clm testmods to 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b@anl.govRename clm to elm in CIME Do all renaming in CIME pieces necessary to change clm to elm Update config_files, commit to a branch in cime and update submodule to point to that branch. Rename CLM45 to ELM in all I compsets This and below lets e3sm_land_developer tests pass the setup phase with the new name. Rename all compsets in elm/cime_config/config_compsets.xml and references to them in config_components.xml, config_grids.xml and mosarts buildnml Edit elm buildnml and build-namelist to use "elm" in some variable names including elmconf_dir, elm.input_data_list Rename testmods in the test suite from e.g. clm-bgcexp to elm-bgcexp Also remove all the CLM40 compsets. 2020-08-27 00:29:54 -0500e8c9c00547cdcefaf36a38f94343abb919892fb2Rename clm to elm in CIMEeditcimeeditcomponents/elm/bld/build-namelisteditcime_config/tests.pyeditcomponents/mosart/cime_config/buildnmleditcomponents/elm/cime_config/config_compsets.xmledit.gitmoduleseditcime_config/config_grids.xmleditcomponents/elm/cime_config/buildnmleditcomponents/elm/cime_config/config_component.xmlcomponents/cam/src/physics/crm/rrtmgp/radiation.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/rrtmgp/radiation.F90components/cam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/cam/bld/build-namelistcomponents/cam/src/physics/rrtmgp/radiation_utils.F90a43f9b962aef85a8ba45e0106a2f52189a812eb01598550217000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAddress PR comments modified: components/cam/bld/build-namelist modified: components/cam/bld/namelist_files/namelist_defaults_cam.xml modified: components/cam/bld/namelist_files/namelist_definition.xml modified: components/cam/src/physics/crm/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation_utils.F90 2020-08-27 10:43:37 -0700a43f9b962aef85a8ba45e0106a2f52189a812eb0Address PR commentseditcomponents/cam/src/physics/rrtmgp/radiation_utils.F90editcomponents/cam/bld/build-namelisteditcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/crm/rrtmgp/radiation.F90editcomponents/cam/src/physics/rrtmgp/radiation.F90editcomponents/cam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mpas-ocean/cime_config/buildnml3850da7c06457333247945c19a2b7226f02866ea1598555761000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd activeTracerHorMixTendency to the timeSeriesStatsMonthlyOutput stream 2020-08-27 14:16:01 -05003850da7c06457333247945c19a2b7226f02866eaAdd activeTracerHorMixTendency to the timeSeriesStatsMonthlyOutput streameditcomponents/mpas-ocean/cime_config/buildnmlcomponents/cam/src/physics/crm/rrtmgp/radiation.F90components/cam/src/physics/rrtmgp/radiation.F90components/cam/src/physics/rrtmgp/radiation_utils.F903f8e205e20a43de15ac9fcc21846047e97ce0f311598557423000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAddress more PR comments modified: components/cam/src/physics/crm/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation_utils.F90 2020-08-27 12:43:43 -07003f8e205e20a43de15ac9fcc21846047e97ce0f31Address more PR commentseditcomponents/cam/src/physics/rrtmgp/radiation.F90editcomponents/cam/src/physics/crm/rrtmgp/radiation.F90editcomponents/cam/src/physics/rrtmgp/radiation_utils.F90components/mpas-source2cd591fa4f4bfcdc9111df4e0e8dd224de561a4f1598561925000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: compass only 2020-08-27 13:58:45 -07002cd591fa4f4bfcdc9111df4e0e8dd224de561a4fupdate mpas-source: compass onlyeditcomponents/mpas-sourcecomponents/homme/cmake/HommeMacros.cmake8f70a242a75a15f5abd3b3892e7fb80e67e16bda1598584959000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix cmake warning when homme is built without pio support. 2020-08-27 21:22:39 -06008f70a242a75a15f5abd3b3892e7fb80e67e16bdaHomme: fix cmake warning when homme is built without pio support.editcomponents/homme/cmake/HommeMacros.cmakecomponents/clm/src/biogeochem/EcosystemBalanceCheckMod.F90components/clm/src/main/clmfates_interfaceMod.F90components/clm/src/data_types/ColumnDataType.F90components/clm/src/main/initVerticalMod.F90components/clm/src/biogeochem/PhosphorusDynamicsMod.F902c97b92878886bed71092e5c5c19c1cb1c30fe171598635843000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates-nutrients: added site level mass balance tracking to phosphatase driven p uptake by plants. Cleaned up interface routines and where they call some routines from 2020-08-28 13:30:43 -04002c97b92878886bed71092e5c5c19c1cb1c30fe17fates-nutrients: added site level mass balance tracking to phosphatase driven p uptake by plants. Cleaned up interface routines and where they call some routines fromeditcomponents/clm/src/main/initVerticalMod.F90editcomponents/clm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/clm/src/data_types/ColumnDataType.F90editcomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/clm/src/main/clmfates_interfaceMod.F90cimef9837d9badfae7438500aeceecfba424b25933091598642807000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule again [BFB] 2020-08-28 15:26:47 -0400f9837d9badfae7438500aeceecfba424b2593309Update CIME submodule againeditcimecomponents/mpas-source10db1cf4315620f43b3f651bb8d026fafb8895ae1598739890000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: compiler flag changes 2020-08-29 15:24:50 -070010db1cf4315620f43b3f651bb8d026fafb8895aeUpdate mpas-source: compiler flag changeseditcomponents/mpas-sourcecomponents/cmake/build_mpas_model.cmake61106909622c50b6258476a74935969acb777f391598774979000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd CIME src path for MPAS builds That is needed by Depends.intel.cmake 2020-08-30 03:09:39 -050061106909622c50b6258476a74935969acb777f39Add CIME src path for MPAS buildseditcomponents/cmake/build_mpas_model.cmakecomponents/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/src/wrm/WRM_type_mod.F90components/mosart/bld/namelist_files/namelist_definition_mosart.xmlcomponents/mosart/src/wrm/WRM_modules.F90components/mosart/bld/build-namelist4c065b857592b0136fdda93b46f7bc8bda5f17d21598886739000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govadd dam construction year for transient runs 2020-08-31 08:12:19 -07004c065b857592b0136fdda93b46f7bc8bda5f17d2add dam construction year for transient runseditcomponents/mosart/bld/build-namelisteditcomponents/mosart/src/wrm/WRM_type_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmleditcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/src/wrm/WRM_modules.F90c919ba36c9c7509ddbf06936d5060bfeaf87ac441598887405000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govsmall change 2020-08-31 08:23:25 -0700c919ba36c9c7509ddbf06936d5060bfeaf87ac44small changeeditcomponents/mosart/src/wrm/WRM_modules.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlfb55e980b3501a02ffd0776e1b19f99f630c5ab31598931802000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comFixes default compute interval for heat budget 2020-08-31 22:43:22 -0500fb55e980b3501a02ffd0776e1b19f99f630c5ab3Fixes default compute interval for heat budgeteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-source89523c4e4fcf14a209e9e3ef09af4fa9bda968751598979478000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: fix landIceMask bug 2020-09-01 09:57:58 -070089523c4e4fcf14a209e9e3ef09af4fa9bda96875Update mpas-source: fix landIceMask bugeditcomponents/mpas-sourcecomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlf757726b81acb488870f4ae03cc2f95eaa27867d1598983363000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govFix format error 2020-09-01 13:02:43 -0500f757726b81acb488870f4ae03cc2f95eaa27867dFix format erroreditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/CMakeLists.txt31c90bb1c5e3cdec51e01da17a982618843e57081598983841000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: set default value for USE_MPIEXEC Note that if someone uses a mach file that already sets the variable, this mod has no side effect (the mach file value is used). However, if someone is developing without a mach file, this sets a reasonable default value for a generic machine. 2020-09-01 12:10:41 -060031c90bb1c5e3cdec51e01da17a982618843e5708Homme: set default value for USE_MPIEXECeditcomponents/homme/CMakeLists.txtcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txt33daa98f8f81334817e2ad9174339891d8e4b9001598984101000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: correctly link to scorpio/scorpio_classic when building with pio support 2020-09-01 12:15:01 -060033daa98f8f81334817e2ad9174339891d8e4b900Homme: correctly link to scorpio/scorpio_classic when building with pio supporteditcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txteditcomponents/homme/test/unit_tests/CMakeLists.txteditcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txt634cb30a71a3494d035b57180a95a5e3e93faf171598990698000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: remove un-needed (and problematic) deps in share_kokkos_ut 2020-09-01 14:04:58 -0600634cb30a71a3494d035b57180a95a5e3e93faf17Homme: remove un-needed (and problematic) deps in share_kokkos_uteditcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/share_kokkos_ut/col_ops_ut.cppd123abad3202590994315806eaa5c11990872cb41598993491000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in col_ops_ut [packed reduction] 2020-09-01 14:51:31 -0600d123abad3202590994315806eaa5c11990872cb4Homme: bug fix in col_ops_ut [packed reduction]editcomponents/homme/test_execs/share_kokkos_ut/col_ops_ut.cppcime_config/allactive/config_compsets.xml27c45a0352e99d84fc74cfc72a1c18fcb921e3aa1599023706000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in allactive compsets Replace CLM45 and CLM with ELM in allactive compsets. Remove all cases with CLM40 2020-09-02 00:15:06 -050027c45a0352e99d84fc74cfc72a1c18fcb921e3aaReplace CLM with ELM in allactive compsetseditcime_config/allactive/config_compsets.xmlcime_config/allactive/config_pesall.xmla600b1d4bb4cb0a076e5d53eaf860dd5cfb4a6261599023812000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange CLM to ELM in config_pesall Change CLM to ELM in config_pesall.xml 2020-09-02 00:16:52 -0500a600b1d4bb4cb0a076e5d53eaf860dd5cfb4a626Change CLM to ELM in config_pesalleditcime_config/allactive/config_pesall.xmlcomponents/cam/cime_config/config_compsets.xmlcomponents/cam/cime_config/config_component.xmld855c854099f57c387c547527e2c60b96d08c8bb1599024168000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in F-cases Replace CLM with ELM in all F-cases 2020-09-02 00:22:48 -0500d855c854099f57c387c547527e2c60b96d08c8bbReplace CLM with ELM in F-caseseditcomponents/cam/cime_config/config_compsets.xmleditcomponents/cam/cime_config/config_component.xmlcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/crm_physics.F90777a9461c5759c9f172d10b7f27cbfeb7fe2b6311599061561000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix clear air RH variables in samxx modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-02 11:46:01 -0400777a9461c5759c9f172d10b7f27cbfeb7fe2b631Fix clear air RH variables in samxxeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/crm_physics.F90components/mpas-source4986a27deae16dc5339da3aa99d826f43fd14dde1599064710000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: bugfix 3rd order advection coeff 2020-09-02 09:38:30 -07004986a27deae16dc5339da3aa99d826f43fd14ddeUpdate mpas-source: bugfix 3rd order advection coeffeditcomponents/mpas-sourceexternals/YAKLcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/cam/src/physics/crm/samxx/microphysics.cpp34df0078801f7c6aaf2d667b5e83b733ed8739941599079721000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govFixing machine files to automatically add -DYAKL_DEBUG to CXXFLAGS for debug runs, fix for debugging symbols and for duplicate CUDA flags 2020-09-02 16:48:41 -040034df0078801f7c6aaf2d667b5e83b733ed873994Fixing machine files to automatically add -DYAKL_DEBUG to CXXFLAGS for debug runs, fix for debugging symbols and for duplicate CUDA flagseditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcime_config/machines/config_compilers.xmleditcomponents/cmake/build_model.cmakecomponents/homme/test_execs/CMakeLists.txte283e51cc0e30d1943fb4bcd5a956cb93b03f1151599081484000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: build homme_tool tests only if tool is enabled. 2020-09-02 15:18:04 -0600e283e51cc0e30d1943fb4bcd5a956cb93b03f115Homme: build homme_tool tests only if tool is enabled.editcomponents/homme/test_execs/CMakeLists.txtcime_config/tests.py2b8b7623e14d13ae3d21f7c11ea4ca9ea7cb49d71599085154000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govUpdate MMF tests 2020-09-02 15:19:14 -07002b8b7623e14d13ae3d21f7c11ea4ca9ea7cb49d7Update MMF testseditcime_config/tests.pycomponents/homme/src/share/cxx/HybridVCoord.cpp0fd3df37e06a628ccbf31e5b84f2529189b9d7ea1599087249000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix random initialization of HybridVCoord 2020-09-02 16:54:09 -06000fd3df37e06a628ccbf31e5b84f2529189b9d7eaHomme: fix random initialization of HybridVCoordeditcomponents/homme/src/share/cxx/HybridVCoord.cppcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/homme/test_execs/thetal_kokkos_ut/forcing_ut.cppac4c8d446361835f8c401580aa088c2831c12c691599087918000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix to TeamUtils, to accommodate league_size=0 RemapFunctor sets up a bunch of TeamUtils (TU), and one happens to have league_size=0 in certain configurations. The TU will never be used in such cases, so avoid raising an error in that case. Also, added check for phi forcing at surface in forcing_ut. 2020-09-02 17:05:18 -0600ac4c8d446361835f8c401580aa088c2831c12c69Homme: fix to TeamUtils, to accommodate league_size=0editcomponents/homme/src/share/cxx/kokkos_utils.hppeditcomponents/homme/test_execs/thetal_kokkos_ut/forcing_ut.cppcomponents/mpas-source85fff26c4bae2378df3459c64cb993e6783525a11599146820000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate mpas-source submodule with updated MALI code This is the final version of the MPAS source update to be consistent with existing state of e3sm/develop. 2020-09-03 08:27:00 -070085fff26c4bae2378df3459c64cb993e6783525a1Update mpas-source submodule with updated MALI codeeditcomponents/mpas-sourcecomponents/mpas-albany-landice/cime_config/buildnmlcime_config/config_grids.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcime_config/allactive/config_compsets.xml9cd546ddda314b44e816fd2f2b0e79f6c2caf6ce1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govInitial commits to support the mpas.gis1to10km mesh in a tri-grid configuration This includes references for the new mapping files. Additional required changes were added in the CIME submodule to files: cime/src/drivers/mct/cime_config/config_component.xml | 2 +- cime/src/externals/mct/mpeu/m_inpak90.F90 | 2 +- 2020-09-03 08:27:06 -07009cd546ddda314b44e816fd2f2b0e79f6c2caf6ceInitial commits to support the mpas.gis1to10km mesh in a tri-grid configurationeditcime_config/config_grids.xmleditcime_config/allactive/config_compsets.xmleditcomponents/mpas-albany-landice/cime_config/buildnmleditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/cime_config/config_compsets.xmlf7e4ebd1117d9194de4438a9403edc1c524171031599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govChange IG compset definition to use FO-MALI instead of SIA-MALI 2020-09-03 08:27:06 -0700f7e4ebd1117d9194de4438a9403edc1c52417103Change IG compset definition to use FO-MALI instead of SIA-MALIeditcomponents/clm/cime_config/config_compsets.xmlcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/user_nl_malibf9f3e52b64165f8cc332517343acb5d374017d01599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govReplace albany_input.xml file with yaml version The yaml solver settings may be changed in the future. 2020-09-03 08:27:06 -0700bf9f3e52b64165f8cc332517343acb5d374017d0Replace albany_input.xml file with yaml versioneditcomponents/mpas-albany-landice/cime_config/buildnmladdcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamleditcomponents/mpas-albany-landice/cime_config/user_nl_malideletecomponents/mpas-albany-landice/bld/namelist_files/albany_input.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml680afa664a28a04219979994b4b771a205748c3a1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate albany_input.yaml to use tpetra/MueLu 2020-09-03 08:27:06 -0700680afa664a28a04219979994b4b771a205748c3aUpdate albany_input.yaml to use tpetra/MueLueditcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcime_config/machines/config_compilers.xml124bb5229dfca5287af0ec7f3c13b3736e59caef1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate version of Albany used by MALI on Cori Note: Other machines can/will be added later. The corresponding update to mpas-source submodule is not included in this commit, and the code will therefore not build. 2020-09-03 08:27:06 -0700124bb5229dfca5287af0ec7f3c13b3736e59caefUpdate version of Albany used by MALI on Corieditcime_config/machines/config_compilers.xmlcomponents/mpas-albany-landice/bld/build-namelistb2c9ae18970af5f8d8c0fb0a40181d9498d5f4a71599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate logic for MALI_DYNAMIC to reflect True/False values 2020-09-03 08:27:06 -0700b2c9ae18970af5f8d8c0fb0a40181d9498d5f4a7Update logic for MALI_DYNAMIC to reflect True/False valueseditcomponents/mpas-albany-landice/bld/build-namelistcomponents/mpas-albany-landice/bld/build-nameliste42136c608437492a914344d22be38b9639d4e141599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake MALI_DYNAMIC options uppercase 2020-09-03 08:27:07 -0700e42136c608437492a914344d22be38b9639d4e14Make MALI_DYNAMIC options uppercaseeditcomponents/mpas-albany-landice/bld/build-namelistcime_config/allactive/config_compsets.xml2b11147aea9173157a8651d192ce60f22fafb7d41599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake A_BGWCYCL1850 compset use FO MALI 2020-09-03 08:27:07 -07002b11147aea9173157a8651d192ce60f22fafb7d4Make A_BGWCYCL1850 compset use FO MALIeditcime_config/allactive/config_compsets.xmlcomponents/mpas-albany-landice/bld/build-namelist-sectioncomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/mpas-albany-landice/bld/namelist_files/namelist_definition_mali.xmlcomponents/mpas-albany-landice/bld/build-namelistf5248ea4db546d75896608a1b3f0238a2c4230b31599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate namelist scripts to correspond to changes to Registry 2020-09-03 08:27:07 -0700f5248ea4db546d75896608a1b3f0238a2c4230b3Update namelist scripts to correspond to changes to Registryeditcomponents/mpas-albany-landice/bld/build-namelisteditcomponents/mpas-albany-landice/bld/namelist_files/namelist_definition_mali.xmleditcomponents/mpas-albany-landice/bld/build-namelist-sectioneditcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml9d6093006a401ee6267924f0d72441ec0d56c66d1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate fsurdat for r05 grid at sim_year 2000 Conflicts: cime 2020-09-03 08:27:07 -07009d6093006a401ee6267924f0d72441ec0d56c66dUpdate fsurdat for r05 grid at sim_year 2000editcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml064c1409807faaa7ae41b86805b4c548f3ee548e1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govupdate albany_input.yaml file 2020-09-03 08:27:07 -0700064c1409807faaa7ae41b86805b4c548f3ee548eupdate albany_input.yaml fileeditcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/buildnmlc8db58072259961758bc3c8a46483345e926ad711599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govChange MALI input file for mpas.gis1to10km resolution 2020-09-03 08:27:07 -0700c8db58072259961758bc3c8a46483345e926ad71Change MALI input file for mpas.gis1to10km resolutioneditcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml07044362c4382a27a07d3eac061f31dc072035881599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govComment out option to write out Albany exo files by default. 2020-09-03 08:27:07 -070007044362c4382a27a07d3eac061f31dc07203588Comment out option to write out Albany exo files by default.editcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/build-namelistcf07eb52d5b73d7469dcd02565ddb6f7164d74de1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govScript changes to allow input file and decomp files have different dates 2020-09-03 08:27:07 -0700cf07eb52d5b73d7469dcd02565ddb6f7164d74deScript changes to allow input file and decomp files have different dateseditcomponents/mpas-albany-landice/bld/build-namelisteditcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/clm/cime_config/config_compsets.xmlcime_config/allactive/config_compsets.xml6a7a2caa22aa4aded0f30453e3200c1f55d8d41e1599146828000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake BG and IG compsets used Static MALI (but with Albany build) This is to have these compsets by default have ice sheet evolution disabled (because it is still problematic), but allow it to be enabled with user_nl changes so that runs with active ice sheets can be performed easily. In the future when ice evolution is happening reliably, this commit can be reversed. 2020-09-03 08:27:08 -07006a7a2caa22aa4aded0f30453e3200c1f55d8d41eMake BG and IG compsets used Static MALI (but with Albany build)editcomponents/clm/cime_config/config_compsets.xmleditcime_config/allactive/config_compsets.xmlcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/mpas-albany-landice/bld/build-namelist72e65ab04a6923f5ad6270ca425a4915e1d709fc1599146828000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govDisable calving in MALI by default This commit sets the calving method to 'none'. The previous default of having calving operating made no sense because restore_calving was also on. This commit also makes sure that calving will always be set to 'none' when MALI is in STATIC mode. For now this is redundant with the first change, but if we change the default calving behavior in the future, we will still want no calving to occur in STATIC mode. 2020-09-03 08:27:08 -070072e65ab04a6923f5ad6270ca425a4915e1d709fcDisable calving in MALI by defaulteditcomponents/mpas-albany-landice/bld/build-namelisteditcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/clm/cime_config/config_compsets.xml64176c34dc2c9f9dc8a15b6759cc8620a023179b1599160958000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govModify IGCLM45_MLI compset to use SIA 2020-09-03 14:22:38 -050064176c34dc2c9f9dc8a15b6759cc8620a023179bModify IGCLM45_MLI compset to use SIAeditcomponents/clm/cime_config/config_compsets.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml63d1ca94a8628883f95603897af2c6c2b1f770221599172514000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govCheckout from master to reod the rebase 2020-09-03 17:35:14 -050063d1ca94a8628883f95603897af2c6c2b1f77022Checkout from master to reod the rebaseeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml6739ad2b7ec9c01b50fd855378ce01ca600e44921599174048000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate fsurdat for r05 grid at sim_year 2000 Conflicts: cime Conflicts: components/clm/bld/namelist_files/namelist_defaults_clm4_5.xml 2020-09-03 18:00:48 -05006739ad2b7ec9c01b50fd855378ce01ca600e4492Update fsurdat for r05 grid at sim_year 2000editcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml21818e71bd3da6900fb2fd9fb957a0197bb5847e1599174318000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd last datafile changes to support new MALI implementation 2020-09-03 18:05:18 -050021818e71bd3da6900fb2fd9fb957a0197bb5847eAdd last datafile changes to support new MALI implementationeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/cam/src/physics/cam/micro_mg2_0.F905e84714cc6e65dd0b9c2c9a851555f8c2929c39d1599195749000http://carson.math.uwm.edu/jenkins/user/kai.zhangkai.zhangkai.zhang@pnnl.govfixed a bug in the previous commit related to incloud -> grid-mean conversion modified: micro_mg2_0.F90 2020-09-03 22:02:29 -07005e84714cc6e65dd0b9c2c9a851555f8c2929c39dfixed a bug in the previous commit related to incloud -> grid-mean conversioneditcomponents/cam/src/physics/cam/micro_mg2_0.F90components/homme/cmake/machineFiles/summit-p9-omp.cmakecomponents/homme/src/share/cxx/Tracers.cppcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakecomponents/homme/src/share/prim_driver_base.F90components/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/config.h.cmake.incomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/homme/src/share/cxx/prim_driver.cppcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmake7d36ff4b568044b80d1dc5aba4194c9563e883961599199678000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Removed HOMMEXX_GB_CONFIG CPP logic We now compile all the code. 2020-09-04 00:07:58 -06007d36ff4b568044b80d1dc5aba4194c9563e88396Homme: Removed HOMMEXX_GB_CONFIG CPP logiceditcomponents/homme/cmake/machineFiles/summit-p9-omp.cmakeeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmakeeditcomponents/homme/src/share/cxx/Tracers.cppeditcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakeeditcomponents/homme/src/share/cxx/prim_driver.cppeditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/src/theta-l_kokkos/config.h.cmake.ineditcomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F909d583d268a970019b247d9d750c525c47273cae81599246705000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govupdated clubbv2 2020-09-04 12:11:45 -07009d583d268a970019b247d9d750c525c47273cae8updated clubbv2editcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90components/homme/src/theta-l_kokkos/cxx/prim_advance_exp.cppa8ca249a653a5176b5683a7091b23a013ba896811599258684000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: update dirk weights in tstep 10 in theta-l_kokkos target 2020-09-04 16:31:24 -0600a8ca249a653a5176b5683a7091b23a013ba89681HOMME: update dirk weights in tstep 10 in theta-l_kokkos targeteditcomponents/homme/src/theta-l_kokkos/cxx/prim_advance_exp.cppcime99e186088efb8c64bdc30fd8f87722bed6a0ec2e1599260914000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAnother update 2020-09-04 19:08:34 -040099e186088efb8c64bdc30fd8f87722bed6a0ec2eAnother updateeditcimecomponents/cmake/build_model.cmakeexternals/kokkoscomponents/cmake/common_setup.cmakeb7b269b3cfaca869e861fa01e6d65e201dc588a31599280914000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govUpgraded kokkos version to 3.2, and adjusted e3sm cmake logic Kokkos no longer creates 'kokkos_generated_settings.cmake'. However, the easy thing to do is to simply find the kokkos package, which is cmake's best way to deal with TPLs. This caused a minor issue related to how cmake looks for the package config file. See inline comment in components/cmake/common_setup.cmake for more info. 2020-09-05 00:41:54 -0400b7b269b3cfaca869e861fa01e6d65e201dc588a3Upgraded kokkos version to 3.2, and adjusted e3sm cmake logiceditcomponents/cmake/build_model.cmakeeditcomponents/cmake/common_setup.cmakeeditexternals/kokkoscomponents/cam/src/physics/cam/micro_mg2_0.F9064dc9f14bc17095dadc896c840d7ee577ff2e0121599459145000http://carson.math.uwm.edu/jenkins/user/kai.zhangkai.zhangkai.zhang@pnnl.govThis fix is to address Wuyin's comments on the overall consistency between in-cloud & grid mean cdnc and state & tendency update. 2020-09-06 23:12:25 -070064dc9f14bc17095dadc896c840d7ee577ff2e012This fix is to address Wuyin's comments on the overall consistency between in-cloud &editcomponents/cam/src/physics/cam/micro_mg2_0.F90components/mosart/src/wrm/WRM_modules.F90components/mosart/src/wrm/WRM_subw_IO_mod.F90574f0ef4db4442869b0d47b66d49dee1fd64372f1599584971000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govfixing negative reservoir storage bug 2020-09-08 10:09:31 -0700574f0ef4db4442869b0d47b66d49dee1fd64372ffixing negative reservoir storage bugeditcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90components/cmake/common_setup.cmake6f6d5d98e4835c4e118c8f1f130b9b26c7f8cadd1599585866000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govExclude default paths when looking for kokkos This is the safest thing to do, to prevent cmake to silently pick up another installation of cmake, found in some other cmake search path. 2020-09-08 11:24:26 -06006f6d5d98e4835c4e118c8f1f130b9b26c7f8caddExclude default paths when looking for kokkoseditcomponents/cmake/common_setup.cmakeexternals/YAKLcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcime_config/machines/config_compilers.xmlb57d58eea970be11627d9eeea78072203008564a1599594461000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govHandling the C++14 requirement for yakl and samxx 2020-09-08 15:47:41 -0400b57d58eea970be11627d9eeea78072203008564aHandling the C++14 requirement for yakl and samxxeditcomponents/cmake/build_model.cmakeeditcime_config/machines/config_compilers.xmleditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditexternals/YAKLcomponents/mpas-sourcee199ac479680d6ffb372feedea608b63116bc5ec1599600255000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate MPAS-Source: Rayleigh damping fix and continuation line 2020-09-08 14:24:15 -0700e199ac479680d6ffb372feedea608b63116bc5ecUpdate MPAS-Source: Rayleigh damping fix and continuation lineeditcomponents/mpas-sourcecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/full_updateannuallanduse.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile8c678d9c6ac5c9d391057d369096c58c91d5f8ac1599608359000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated LUT for alignment between iESM and ELM LUT now uses previous year as reference for post-2000, and also tracks pasture. New reference files have been created, and the land conversion assumptions have been updated to better reflect CMIP6 scenarios, particularly ssp5rcp85 as this is the available LUH2 data. This is a standalone version of the same file used in iESM for E3SMv2. 2020-09-08 16:39:19 -07008c678d9c6ac5c9d391057d369096c58c91d5f8acUpdated LUT for alignment between iESM and ELMdeletecomponents/clm/tools/clm4_5/land_use_translator/full_updateannuallanduse.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefileaddcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefileb7e75da428c4aa23a37906b8a1f888fbef9467b61599608380000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated comments for LUT v2 2020-09-08 16:39:40 -0700b7e75da428c4aa23a37906b8a1f888fbef9467b6Updated comments for LUT v2editcomponents/clm/tools/clm4_5/land_use_translator/Makefileeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile38dc8ce2dc9f8e315c23eb3500a63f7c2197617f1599608636000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govIncreased precision of calculations and outputs Internal variables and calculations are now double instead of float. Rounding to integer no longer occurs for area outputs. There is still rounding in double to float conversion for writing files. Small grass distribution bug fixed. Updated Makefile to hopefully work on different machines. Added some debug info. Changes to be committed: modified: components/clm/tools/clm4_5/land_use_translator/Makefile modified: components/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c 2020-09-08 16:43:56 -070038dc8ce2dc9f8e315c23eb3500a63f7c2197617fIncreased precision of calculations and outputseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile3da971bcbc08cc4f354a1d08eba2fb5a7e2cc5471599608646000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated Makefile to help with compilation on Cori and Compy Added checks for Cori and Compy to set different complier and netcdf options. Also added some comments to the beginning of udateannuallanduse_v2.c 2020-09-08 16:44:06 -07003da971bcbc08cc4f354a1d08eba2fb5a7e2cc547Updated Makefile to help with compilation on Cori and Compyeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefileaa3f3badc400ca73f30875ea56b44e3299f6cd1f1599608651000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated makefile and cleaned up some precision issues This makefile should now work will on both NERSC Cori and on PNNL Compy. Added a tolerance to some error checks to account for increased precision. Cleaned up some zero and 100 checks to account for increased precision. 2020-09-08 16:44:11 -0700aa3f3badc400ca73f30875ea56b44e3299f6cd1fUpdated makefile and cleaned up some precision issueseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c614e80effacf28fa31272b4a0bb28e1e382e51371599608655000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdded high-precision rounding to stabilize outputs across machines Final sum checks have been modified to avoid pft swaps due to different selections for adjustment. The pft pct values are now multiplied by 1E5, rounded, checked, then converted back to percent. This happens at the end of both the sethurttcrop and sethurttpasture functions. 2020-09-08 16:44:15 -0700614e80effacf28fa31272b4a0bb28e1e382e5137Added high-precision rounding to stabilize outputs across machineseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.cb060f0119537a11436f75bac7e4d89e691cb19fe1599608660000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAlso rounding the harvest outputs Rounding the harvest outputs to same precision as pft outputs. Added a debugging check to harvest normalization. 2020-09-08 16:44:20 -0700b060f0119537a11436f75bac7e4d89e691cb19feAlso rounding the harvest outputseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c1fc59d895669b292e778b41830394d71e91e230d1599608663000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govTurned off debug output for default Final LUT file without debug output. 2020-09-08 16:44:23 -07001fc59d895669b292e778b41830394d71e91e230dTurned off debug output for defaulteditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile7f53e9a6453c4497c14112c575bacfa9614314541599608668000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdded additional make message in Makefile Makefile now returns a suggestion if the make fails. 2020-09-08 16:44:28 -07007f53e9a6453c4497c14112c575bacfa961431454Added additional make message in Makefileeditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c520457fbe67a72997e36428bc1b1c08b7f00913f1599608671000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated 1850 and 2015 initial file mcrop names in code New mcrop lut initial files for 1850 and 2015 have been created with the current LUT. The names are hardcoded in the code, so they had to be updated. 2020-09-08 16:44:31 -0700520457fbe67a72997e36428bc1b1c08b7f00913fUpdated 1850 and 2015 initial file mcrop names in codeeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c3f34e2b819160ec4dd3a061d0c6450adacc66dc61599608675000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdate run example to include current input file directory 2020-09-08 16:44:35 -07003f34e2b819160ec4dd3a061d0c6450adacc66dc6Update run example to include current input file directoryeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c6236981ed3398671d65aac980d4526a1d060e1561599608678000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated land use translator to more easily do different scenarios Changed the first input argument to be LUH input state file name denoting the scenario. Only historical file names can and must have "HIST" in the name to determine the years to process. Output file names are now based on the input file name. 2020-09-08 16:44:38 -07006236981ed3398671d65aac980d4526a1d060e156Updated land use translator to more easily do different scenarioseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmlcomponents/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90components/clm/tools/clm4_5/mksurfdata_map/src/Makefile.common251afedc5594a60b10d72bbe2cdff72bc63abb281599608682000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated mksurfdata tools for new LUT Updated the mksurfdat Makefile.common to fix the LDFLAGS line. Changed a tolerance value in mksurfdat.F90 for near-zero machine error to account for pft pct being rounded to 1e-7 rather than integer percent. Updated the default namelist values for mksrf_fvegtyp to get the correct files and to include all potential CMIP6 RCPs. Added an explicit type conversion in updateannuallanduse_v2.c. Changes to be committed: modified: components/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xml modified: components/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c modified: components/clm/tools/clm4_5/mksurfdata_map/src/Makefile.common modified: components/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90 2020-09-08 16:44:42 -0700251afedc5594a60b10d72bbe2cdff72bc63abb28Updated mksurfdata tools for new LUTeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmleditcomponents/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90editcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.commoneditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmle7b2bddc3b8089c25cbcc6374f62da91e3eb90141599608685000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated namelist defaults for mksrf_vegtyp Added all years for SSP2 RCP85 and SSP5 RCP85 so that single-year surface files can be created for any year. modified: components/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xml 2020-09-08 16:44:45 -0700e7b2bddc3b8089c25cbcc6374f62da91e3eb9014Updated namelist defaults for mksrf_vegtypeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmla430e6219d1edc63b47949918ca0645cbaa9fcfd1599608688000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdate clm namelist definition to include new land surface file rcp tags Included the new rcp options for creating land surface files in the valid rcp tags check in components/clm/bld/namelist_files/namelist_definition_clm4_5.xml 2020-09-08 16:44:48 -0700a430e6219d1edc63b47949918ca0645cbaa9fcfdUpdate clm namelist definition to include new land surface file rcp tagseditcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c2e837e7f23b56bb4e7f8bfb896a31d9a514688d71599608694000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated the default historical file name The LUT input file names have been changed, so this default name in the code for the"1850" option has been updated. 2020-09-08 16:44:54 -07002e837e7f23b56bb4e7f8bfb896a31d9a514688d7Updated the default historical file nameeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/mosart/src/wrm/WRM_modules.F90components/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/src/wrm/WRM_type_mod.F90308771629241a39a017969c2ab8ebda5530138b11599610468000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govrename WRMUnit%active to WRMUnit%active_stage 2020-09-08 17:14:28 -0700308771629241a39a017969c2ab8ebda5530138b1rename WRMUnit%active to WRMUnit%active_stageeditcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/mosart/src/wrm/WRM_type_mod.F90externals/kokkos.gitmodules52bc1495a5b57536255f145e66a647d82dfddd961599629415000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govChanged kokkos version used for submodule In order to get around issue 3355 on kokkos github repo, we had to use our E3SM fork with an additional commit, that takes care of not adding a problematic link flag. 2020-09-08 23:30:15 -060052bc1495a5b57536255f145e66a647d82dfddd96Changed kokkos version used for submoduleeditexternals/kokkosedit.gitmodulescomponents/homme/cmake/Kokkos.cmakecomponents/homme/test_execs/theta-l-nlev30-kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/theta-nlev72-kokkos/CMakeLists.txtcomponents/homme/test_execs/theta-nlev128-kokkos/CMakeLists.txtcomponents/homme/test_execs/theta-l-nlev72-kokkos/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/src/share/compose/CMakeLists.txt97b7d583235131b49966d190438380582a24bfa71599629508000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: Removed pointless macro link_to_kokkos Since kokkos is built internally, we should use the cmake native way of adding tpl dependencies, namely target_link_libraries, which takes care of compile/link flags/options. 2020-09-08 23:31:48 -060097b7d583235131b49966d190438380582a24bfa7HOMME: Removed pointless macro link_to_kokkoseditcomponents/homme/test_execs/theta-l-nlev72-kokkos/CMakeLists.txteditcomponents/homme/test_execs/theta-nlev72-kokkos/CMakeLists.txteditcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txteditcomponents/homme/src/share/compose/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/test_execs/theta-l-nlev30-kokkos/CMakeLists.txteditcomponents/homme/cmake/Kokkos.cmakeeditcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txteditcomponents/homme/test_execs/theta-nlev128-kokkos/CMakeLists.txteditcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/test_execs/thetal_kokkos_ut/caar_ut.cppcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hpp1c1aac2cfd7c6c6bf135827127a181a56a37db9b1599631042000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: fix Kokkos error in debug mode on Cuda 2020-09-08 23:57:22 -06001c1aac2cfd7c6c6bf135827127a181a56a37db9bHOMME: fix Kokkos error in debug mode on Cudaeditcomponents/homme/test_execs/thetal_kokkos_ut/caar_ut.cppeditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/stats_zt_module.F90components/cam/src/physics/clubb/Skx_module.F90components/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90components/cam/src/physics/clubb/diffusion.F90components/cam/src/physics/clubb/turbulent_adv_pdf.F90components/cam/src/physics/clubb/lapack_wrap.F90components/cam/src/physics/clubb/stat_file_module.F90components/cam/src/physics/clubb/corr_varnce_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/cam/src/physics/clubb/error_code.F90components/cam/src/physics/clubb/mono_flux_limiter.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/silhs/transform_to_pdf_module.F90components/cam/src/physics/clubb/mixing_length.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/clubb/variables_prognostic_module.F90components/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_type_utilities.F90components/cam/src/physics/clubb/setup_clubb_pdf_params.F90components/cam/src/physics/silhs/est_kessler_microphys_module.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/clubb/calc_roots.F90components/cam/src/physics/clubb/pdf_closure_module.F90components/cam/src/physics/silhs/silhs_importance_sample_module.F90components/cam/src/physics/clubb/diagnose_correlations_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/clubb/new_hybrid_pdf_main.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/variables_diagnostic_module.F90components/cam/src/physics/clubb/mean_adv.F90components/cam/src/physics/clubb/advance_windm_edsclrm_module.F90components/cam/src/physics/clubb/stats_sfc_module.F9080a96c8285e96a5f4b4464dd721ee61595f55ddf1599672444000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS used in this NGD CLUBB SILHS branch to version 1497311 from September 2, 2020. 2020-09-09 12:27:24 -050080a96c8285e96a5f4b4464dd721ee61595f55ddfI updated the version of CLUBB and SILHS used in this NGD CLUBB SILHS brancheditcomponents/cam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/cam/src/physics/silhs/est_kessler_microphys_module.F90editcomponents/cam/src/physics/silhs/silhs_importance_sample_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/error_code.F90editcomponents/cam/src/physics/clubb/numerical_check.F90addcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/calc_roots.F90editcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/cam/src/physics/clubb/stats_sfc_module.F90editcomponents/cam/src/physics/clubb/mono_flux_limiter.F90editcomponents/cam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/clubb/stats_zt_module.F90editcomponents/cam/src/physics/clubb/mixing_length.F90editcomponents/cam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/cam/src/physics/clubb/stat_file_module.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90editcomponents/cam/src/physics/clubb/stats_type_utilities.F90editcomponents/cam/src/physics/silhs/transform_to_pdf_module.F90deletecomponents/cam/src/physics/clubb/variables_prognostic_module.F90editcomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90addcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/cam/src/physics/clubb/Skx_module.F90editcomponents/cam/src/physics/clubb/lapack_wrap.F90editcomponents/cam/src/physics/clubb/corr_varnce_module.F90editcomponents/cam/src/physics/clubb/pdf_closure_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/cam/src/physics/clubb/mean_adv.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/diffusion.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90deletecomponents/cam/src/physics/clubb/variables_diagnostic_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90components/cam/src/physics/silhs/parameters_silhs.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90run_silhs_anvil_gust.cshcomponents/homme/src/share/prim_driver_base.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/clm/src/biogeophys/SoilHydrologyType.F90components/cam/src/physics/cam/physpkg.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/cam/micro_mg_cam.F90diagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/error_code.F90diagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_e3sm_budget.pydiagnostic_v2_0/function_pick_out.pycomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90d85e70af3753d24276ab7da1db0ab94263a880e81599675486000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpload some modifications which allow better LBA. Conflicts: components/cam/src/physics/clubb/advance_clubb_core_module.F90 components/cam/src/physics/clubb/model_flags.F90 components/cam/src/physics/clubb/parameters_tunable.F90 2020-09-09 13:18:06 -0500d85e70af3753d24276ab7da1db0ab94263a880e8Upload some modifications which allow better LBA.editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/clm/src/biogeophys/SoilHydrologyType.F90editdiagnostic_v2_0/function_pick_out.pyeditcomponents/cam/src/physics/clubb/error_code.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/cam/micro_mg_cam.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/homme/src/share/prim_driver_base.F90editcomponents/cam/src/physics/cam/micro_mg_utils.F90editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/draw_e3sm_budget.pyeditcomponents/cam/src/physics/clubb/advance_helper_module.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editdiagnostic_v2_0/draw_plots_hoz_2D.pyeditcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/cam/physpkg.F90editdiagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/CLUBB_diagnostics_template.htmldiagnostic_v2_0/draw_clubb_skew.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/draw_rain.pydiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/cam/micro_mg_cam.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90diagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90diagnostic_v2_0/draw_silhs_standard.pydiagnostic_v2_0/draw_e3sm_budget.pycomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90eecc5a066a0469c6b8f60946a692f5a4b4f4104a1599676215000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpgrade budgets numlib and numice, as well as the diagnostic package. 2020-09-09 13:30:15 -0500eecc5a066a0469c6b8f60946a692f5a4b4f4104aUpgrade budgets numlib and numice, as well as the diagnostic package.editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/draw_clubb_skew.pyeditcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/clubb/advance_helper_module.F90editdiagnostic_v2_0/draw_e3sm_budget.pyeditcomponents/cam/src/physics/cam/micro_mg_cam.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_large_scale.pyeditdiagnostic_v2_0/draw_plots_hoz_3D.pyeditdiagnostic_v2_0/function_cal_mean.pyeditcomponents/cam/src/physics/clubb/model_flags.F90editdiagnostic_v2_0/CLUBB_diagnostics_template.htmleditdiagnostic_v2_0/draw_rain.pyeditcomponents/cam/src/physics/cam/micro_mg_utils.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editdiagnostic_v2_0/draw_silhs_standard.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editdiagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/cam/macrop_driver.F90diagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/draw_rain.pycomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90components/cam/src/physics/cam/micro_mg_cam.F90b5061d85ac073f84681afddc2f965368076b54ba1599676861000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe added a simple detrainment scheme in clubb_intr.F90, in order to reduce SWCF over storm tack. We also added some new budget terms. 2020-09-09 13:41:01 -0500b5061d85ac073f84681afddc2f965368076b54baWe added a simple detrainment scheme in clubb_intr.F90, in order to reduce SWCF over storm tack.editdiagnostic_v2_0/draw_rain.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditcomponents/cam/src/physics/cam/micro_mg_utils.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/cam/micro_mg_cam.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/macrop_driver.F90editcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/cam/clubb_intr.F90diagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/clubb_intr.F90diagnostic_v2_0/draw_rain.py939690072bd10cb8e131a5eb97a54f287f97f9601599677033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNormal update of diagnostic_v2_0. 2020-09-09 13:43:53 -0500939690072bd10cb8e131a5eb97a54f287f97f960Normal update of diagnostic_v2_0.editdiagnostic_v2_0/draw_rain.pyeditrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/cam/clubb_intr.F90034980fa566d58101b025d7aaf0b2b00fa89f62b1599677189000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govchange clubb_ipdf_call_placement 2020-09-09 11:46:29 -0700034980fa566d58101b025d7aaf0b2b00fa89f62bchange clubb_ipdf_call_placementeditcomponents/cam/src/physics/cam/clubb_intr.F90diagnostic_v2_0/draw_clubb_standard.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/stats_variables.F90run_silhs_anvil_gust.cshdiagnostic_v2_0/CLUBB_diagnostics_template.htmlcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/cam/micro_mg_cam.F90efef249ccd3b98dc6d6e5bdf94aab724172d9d4c1599677706000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommit for newbase run. issue #18 2020-09-09 13:55:06 -0500efef249ccd3b98dc6d6e5bdf94aab724172d9d4cCommit for newbase run. issue #18editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditcomponents/cam/src/physics/cam/micro_mg_cam.F90editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/draw_clubb_standard.pyeditcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editdiagnostic_v2_0/CLUBB_diagnostics_template.htmleditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90run_silhs_anvil_gust.cshdiagnostic_v2_0/E3SM_CLUBB_diag.py196432f5829f6ef345d59635f293e3ffd68053cd1599677955000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommit for newbase. We added a conserved detrainment code, snowfrc=0.1, rhmini=0.8. #18 2020-09-09 13:59:15 -0500196432f5829f6ef345d59635f293e3ffd68053cdCommit for newbase. We added a conserved detrainment code, snowfrc=0.1, rhmini=0.8. #18editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.csh10e3fcb15f5d8ceb95f740a7609050ca067c5ecf1599678238000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order to limite the tunable parameters, we changed the advance_clubb_core_module.F90 and run scritp. We can repeat the result of [caseB](https://carson.math.uwm.edu/larson-group/internal/E3SM_Global_output/output-20200316/) 2020-09-09 14:03:58 -050010e3fcb15f5d8ceb95f740a7609050ca067c5ecfIn order to limite the tunable parameters, we changed the advance_clubb_core_module.F90 and run scritp. We can repeat the result of [caseB](https://carson.math.uwm.edu/larson-group/internal/E3SM_Global_output/output-20200316/)editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_clubb_standard.pyrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/parameters_tunable.F90afc7b5c1d5f5ba93e049e46ef2b1c671c623cd2b1599678468000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange a magic number of altitude_threshold, it allows a deeper mixing layer. issue #18 2020-09-09 14:07:48 -0500afc7b5c1d5f5ba93e049e46ef2b1c671c623cd2bChange a magic number of altitude_threshold, it allows a deeper mixing layer. issue #18editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/parameters_tunable.F90fdeaf2a5bcce364f7b96446a8e86f81a5ba016761599678639000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe increase `altitude_threshold` from 100 to 300m that makes a deeper mixing layar and solves fog problems over stratocumuls regimes. Issue #18. 2020-09-09 14:10:39 -0500fdeaf2a5bcce364f7b96446a8e86f81a5ba01676We increase `altitude_threshold` from 100 to 300m that makes a deeper mixing layar and solves fog problems over stratocumuls regimes. Issue #18.editcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_variables.F90run_silhs_anvil_gust.cshcime/src/externals/pio1/pio/piodarray.F90.incomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F9011f8c3d6eccb0f94c060690dece171008b56382c1599680502000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit can repeat simulation B, in https://github.com/larson-group/E3SM/issues/18#issuecomment-622158613 2020-09-09 14:41:42 -050011f8c3d6eccb0f94c060690dece171008b56382cThis commit can repeat simulation B, in https://github.com/larson-group/E3SM/issues/18#issuecomment-622158613editcomponents/cam/src/physics/clubb/model_flags.F90editcime/src/externals/pio1/pio/piodarray.F90.ineditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90diagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/variables_prognostic_module.F90components/cam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.csh5c8422f16aafd393cefd5ec0b316c5ef682adcbb1599680750000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug of PDF_PARAMS_FRZ. issue #18 Conflicts: components/cam/src/physics/clubb/variables_prognostic_module.F90 This file has already been removed in the latest version of CLUBB, as has the variable pdf_params_frz. 2020-09-09 14:45:50 -05005c8422f16aafd393cefd5ec0b316c5ef682adcbbI fixed a bug of PDF_PARAMS_FRZ. issue #18editdiagnostic_v2_0/draw_clubb_budget.pyeditcomponents/cam/src/physics/cam/clubb_intr.F90editrun_silhs_anvil_gust.cshaddcomponents/cam/src/physics/clubb/variables_prognostic_module.F90components/cam/src/physics/clubb/variables_prognostic_module.F90319672415fc247c6a94167f6dd4d4034c210a2e31599680867000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.edugit sucks 2020-09-09 14:47:47 -0500319672415fc247c6a94167f6dd4d4034c210a2e3git sucksdeletecomponents/cam/src/physics/clubb/variables_prognostic_module.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/mpas-ocean/cime_config/buildnmledb71390e0b4a26a2db3d20d4767e096058f45a81599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govAdds E3SM support for MPAS-Ocean/Sea-ice grid ECwISC30to60E1r2. 2020-09-09 14:49:46 -0500edb71390e0b4a26a2db3d20d4767e096058f45a8Adds E3SM support for MPAS-Ocean/Sea-ice grid ECwISC30to60E1r2.editcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcime_config/config_grids.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmldcc7afe90cbff5cd99e675d2b17734974bdde7f61599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govAdding JRA support to ECwISC30to60E1r2 grid 2020-09-09 14:49:46 -0500dcc7afe90cbff5cd99e675d2b17734974bdde7f6Adding JRA support to ECwISC30to60E1r2 grideditcime_config/config_grids.xmlcime_config/config_grids.xml4eb9adf71d520c6dc098374f5e557ff77a51bff81599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govCorrecting paths for mapping files 2020-09-09 14:49:46 -05004eb9adf71d520c6dc098374f5e557ff77a51bff8Correcting paths for mapping fileseditcime_config/config_grids.xmldiagnostic_v2_0/draw_micro_budget.pyb1d65922fd10210a56320cd337fd45adf47e16d51599680990000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCreate draw_micro_budget.py 2020-09-09 14:49:50 -0500b1d65922fd10210a56320cd337fd45adf47e16d5Create draw_micro_budget.pyadddiagnostic_v2_0/draw_micro_budget.pydiagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/CLUBB_diagnostics_template.htmldiagnostic_v2_0/draw_micro_budget.py4f98b60e1c61872a1cf6a938fafacd117b52673c1599681015000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate CLUBB's Diagnostic Pack 2020-09-09 14:50:15 -05004f98b60e1c61872a1cf6a938fafacd117b52673cUpdate CLUBB's Diagnostic Packeditdiagnostic_v2_0/CLUBB_diagnostics_template.htmleditdiagnostic_v2_0/draw_micro_budget.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/E3SM_CLUBB_diag.py51f430e54a0794a80cf604b1c09448ef1cd02ebc1599681037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate E3SM_CLUBB_diag.py 2020-09-09 14:50:37 -050051f430e54a0794a80cf604b1c09448ef1cd02ebcUpdate E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/mpas-source032563f081bdde55a02706f27a85ca986b7ab2bd1599682567000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate MPAS-Source: COMPASS and documentation only 2020-09-09 13:16:07 -0700032563f081bdde55a02706f27a85ca986b7ab2bdUpdate MPAS-Source: COMPASS and documentation onlyeditcomponents/mpas-sourcecomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90f01f2cf0d6a9771b01d032e692b0b86ecd12f0e01599684366000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govclean up unnecessary comments 2020-09-09 13:46:06 -0700f01f2cf0d6a9771b01d032e692b0b86ecd12f0e0clean up unnecessary commentseditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/clm/src/cpl/lnd_import_export.F90components/clm/src/main/lnd2atmMod.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/model_flags.F90cime/config/e3sm/machines/config_machines.xmlcomponents/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/clubb/advance_helper_module.F90components/clm/src/biogeophys/LakeFluxesMod.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/clm/src/biogeophys/FrictionVelocityMod.F90components/cam/src/physics/cam/clubb_intr.F90components/clm/src/biogeophys/CanopyTemperatureMod.F90cime/config/e3sm/machines/config_compilers.xmlcomponents/cam/cime_config/config_compsets.xmlcime/config/e3sm/machines/config_batch.xmlcomponents/clm/src/biogeophys/CanopyFluxesMod.F90e2dbbef293de6c705410b86c92c33b774c34c8fe1599687197000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe added a new formula for [invrs_tau_xp2](https://github.com/larson-group/E3SM/issues/18#issuecomment-636089345). The results of this commit is shown [here](https://github.com/larson-group/E3SM/issues/18#issuecomment-638331975). 2020-09-09 16:33:17 -0500e2dbbef293de6c705410b86c92c33b774c34c8feWe added a new formula for [invrs_tau_xp2](https://github.com/larson-group/E3SM/issues/18#issuecomment-636089345). The results of this commit is shown [here](https://github.com/larson-group/E3SM/issues/18#issuecomment-638331975).editcomponents/clm/src/cpl/lnd_import_export.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/clm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/cam/cime_config/config_compsets.xmleditcomponents/clm/src/biogeophys/FrictionVelocityMod.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editcime/config/e3sm/machines/config_compilers.xmleditcomponents/cam/src/physics/clubb/numerical_check.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_helper_module.F90editcime/config/e3sm/machines/config_machines.xmleditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editcime/config/e3sm/machines/config_batch.xmleditcomponents/clm/src/main/lnd2atmMod.F90editcomponents/clm/src/biogeophys/LakeFluxesMod.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/clm/src/biogeophys/CanopyFluxesMod.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/clubb/model_flags.F904a20e68380e1cf2d0a1d11a2ed6c4b2ad43fd8c61599687302000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFinishing off the previous cherry-pick/merge. 2020-09-09 16:35:02 -05004a20e68380e1cf2d0a1d11a2ed6c4b2ad43fd8c6Finishing off the previous cherry-pick/merge.editcomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90run_silhs_anvil_gust.csh968ffe1c695c928254a7a55969cf5ed8ab1a641d1599687555000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit can reproduce simulation C in https://github.com/larson-group/E3SM/issues/18#issuecomment-640086590. 2020-09-09 16:39:15 -0500968ffe1c695c928254a7a55969cf5ed8ab1a641dThis commit can reproduce simulation C in https://github.com/larson-group/E3SM/issues/18#issuecomment-640086590.editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90run_silhs_anvil_gust.csh0c61e8402c37ad556e6fab8f3b111ce3b76547a81599687605000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe tuned tau and its equations. This tuning has better ITCZ and a stronger contrast between SC and CU. Results is shown in D of https://github.com/larson-group/E3SM/issues/18#issuecomment-640708110 2020-09-09 16:40:05 -05000c61e8402c37ad556e6fab8f3b111ce3b76547a8We tuned tau and its equations. This tuning has better ITCZ and a stronger contrast between SC and CU. Results is shown in D of https://github.com/larson-group/E3SM/issues/18#issuecomment-640708110editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/mpas-ocean/cime_config/buildnml32058b86bd7d80326c97b53563131b7c3c64aab61599687630000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govScript support for new EC30to60E2v2 ocean mesh 2020-09-09 16:40:30 -050032058b86bd7d80326c97b53563131b7c3c64aab6Script support for new EC30to60E2v2 ocean mesheditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcime_config/config_grids.xmldiagnostic_v2_0/function_cal_mean.pyec1160128c09e9d47feea881b24a4ab4bd96e37c1599687640000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_cal_mean.py 2020-09-09 16:40:40 -0500ec1160128c09e9d47feea881b24a4ab4bd96e37cUpdate function_cal_mean.pyeditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/function_cal_mean.py54133e3e41521febe0d0f421e137c302a38cfc4c1599687666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduupdate function_cal_mean.py for handling muli year 2020-09-09 16:41:06 -050054133e3e41521febe0d0f421e137c302a38cfc4cupdate function_cal_mean.py for handling muli yeareditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.py697b87fb1b03fa9e6693ae0e3987123b220650551599687697000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate E3SM_CLUBB_diag.py 2020-09-09 16:41:37 -0500697b87fb1b03fa9e6693ae0e3987123b22065055Update E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/function_cal_mean.pya07960211f9b973ab030997dd2a78e15d40af6e71599687727000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_cal_mean.py 2020-09-09 16:42:07 -0500a07960211f9b973ab030997dd2a78e15d40af6e7Update function_cal_mean.pyeditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/function_pick_out.py10b89327c504a7feaceb5492b786f04c6b21c27d1599687756000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_pick_out.py 2020-09-09 16:42:36 -050010b89327c504a7feaceb5492b786f04c6b21c27dUpdate function_pick_out.pyeditdiagnostic_v2_0/function_pick_out.pydiagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_clubb_standard.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/stats_variables.F90diagnostic_v2_0/draw_plots_hoz_2D.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/clubb/stats_zm_module.F905f30fc08891af99c42f19be4283528e037f9c5ca1599697582000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe make a new Richardson related formula for invrs_tau_wpxp, in order to remove the `5`. This change makes a good distinction between CU and SC, result can be found in D of [plots](https://github.com/larson-group/E3SM/issues/18#issuecomment-657628303). 2020-09-09 19:26:22 -05005f30fc08891af99c42f19be4283528e037f9c5caWe make a new Richardson related formula for invrs_tau_wpxp, in order to remove the `5`. This change makes a good distinction between CU and SC, result can be found in D of [plots](https://github.com/larson-group/E3SM/issues/18#issuecomment-657628303).editdiagnostic_v2_0/draw_clubb_budget.pyeditcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editdiagnostic_v2_0/function_cal_mean.pyeditcomponents/cam/src/physics/clubb/stats_variables.F90editdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditrun_silhs_anvil_gust.csheditcomponents/cam/bld/namelist_files/namelist_definition.xmldiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.py9fade9c3a2f2ce8957106623bad1b0ba959f22b71599698029000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate CLUBB's diagnostic package. Now, making average for multiple years is allowed. Please set `nyear` in E3SM_CLUBB_diag.py. 2020-09-09 19:33:49 -05009fade9c3a2f2ce8957106623bad1b0ba959f22b7Update CLUBB's diagnostic package. Now, making average for multiple years is allowed. Please set `nyear` in E3SM_CLUBB_diag.py.editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_helper_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmlcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/surface_varnce_module.F90run_silhs_anvil_gust.cshdiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/function_cal_mean.py5466328b092ed9694e8dabfbeb58ad91426080241599698337000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClean up the codes of tau and Richardson number. issue #18 2020-09-09 19:38:57 -05005466328b092ed9694e8dabfbeb58ad9142608024Clean up the codes of tau and Richardson number. issue #18editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90editdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_large_scale.pyeditcomponents/cam/src/physics/clubb/advance_helper_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditrun_silhs_anvil_gust.csheditcomponents/cam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmleditdiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/clubb/precipitation_fraction.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/micro_mg2_0.F901711c4eb272a9b67c4df3b139e0e88d9eff77d871599698391000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFor EAM_tau and ZM. Issue #18 2020-09-09 19:39:51 -05001711c4eb272a9b67c4df3b139e0e88d9eff77d87For EAM_tau and ZM. Issue #18editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/cam/micro_mg_utils.F90tau_clean_anvil.cshe59da3ae66ccd32cdbaedc1a0f9d8f86331c42e91599698418000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA run script for running tau and ZM. Issue #18 2020-09-09 19:40:18 -0500e59da3ae66ccd32cdbaedc1a0f9d8f86331c42e9A run script for running tau and ZM. Issue #18addtau_clean_anvil.cshcompile_run_script_edison.cshmake_e3sm_atm_anvil.cshmake_e3sm_atm_cori.cshrun_e3sm_anvil.cshrun_e3sm_anvil_v2.cshmake_e3sm_atm.csh69087d0d0a6c1981cd4058ff73a79825f84c8cba1599698439000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClean up. 2020-09-09 19:40:39 -050069087d0d0a6c1981cd4058ff73a79825f84c8cbaClean up.deletemake_e3sm_atm_cori.cshdeleterun_e3sm_anvil_v2.cshdeletecompile_run_script_edison.cshdeletemake_e3sm_atm_anvil.cshdeletemake_e3sm_atm.cshdeleterun_e3sm_anvil.cshrun_silhs_anvil_gust.csh7a59b326837c688999723843c860a3578b7939f91599698463000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduEAM_tau_silhs run script. 2020-09-09 19:41:03 -05007a59b326837c688999723843c860a3578b7939f9EAM_tau_silhs run script.editrun_silhs_anvil_gust.cshrun_silhs_anvil_gust.csh0d49036b57def3d4f41fbe14fb4cc628b1f1e5611599698490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRepeat https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/eam_tau.n2p3_c151_pre1_fallp25_sgv_1d/ 2020-09-09 19:41:30 -05000d49036b57def3d4f41fbe14fb4cc628b1f1e561Repeat https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/eam_tau.n2p3_c151_pre1_fallp25_sgv_1d/editrun_silhs_anvil_gust.cshremap/make_climo.pyremap/function_cal_mean.pyrun_silhs_anvil_gust.cshremap/remap_ne30.cshremap/remap.cshremap/remap_ne30_3h.cshremap/remap_3h.csh1ef7a5ceed2a4c35a12bbcac339a04787d1bef991599698514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemaping the SE to Lat-Lon 2020-09-09 19:41:54 -05001ef7a5ceed2a4c35a12bbcac339a04787d1bef99Remaping the SE to Lat-Lonaddremap/function_cal_mean.pyaddremap/remap_3h.csheditrun_silhs_anvil_gust.cshaddremap/remap.cshaddremap/make_climo.pyaddremap/remap_ne30_3h.cshaddremap/remap_ne30.cshdiagnostic_v2_0/function_cal_mean.pydbf99ef481e94e909c9ae0cc293ea2915f8de8c71599698689000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating function_cal_mean.py to match exactly what is in Zhun's archived NGD CLUBB SILHS directory. 2020-09-09 19:44:49 -0500dbf99ef481e94e909c9ae0cc293ea2915f8de8c7Updating function_cal_mean.py to match exactly what is in Zhun'seditdiagnostic_v2_0/function_cal_mean.pyREPLAY/run_e3sm_anvil_gust.cshrun_silhs_anvil_gust.cshREPLAY/README.txt733b9482f763f946218a436244fdad48dda992131599699124000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRun script for making global IOP files. 2020-09-09 19:52:04 -0500733b9482f763f946218a436244fdad48dda99213Run script for making global IOP files.addREPLAY/README.txteditrun_silhs_anvil_gust.cshaddREPLAY/run_e3sm_anvil_gust.cshrun_silhs_anvil_gust.csha65eda984626065417a5eafda62dae13ee787a721599699158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBack to no-sgv run. 2020-09-09 19:52:38 -0500a65eda984626065417a5eafda62dae13ee787a72Back to no-sgv run.editrun_silhs_anvil_gust.cshREPLAY/README.txt630dc06db892ec269c8c96d6b85dbf064d804a3f1599699184000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate Readme 2020-09-09 19:53:04 -0500630dc06db892ec269c8c96d6b85dbf064d804a3fUpdate ReadmeeditREPLAY/README.txtrun_silhs_anvil_gust.csh327658e08d899fd6d85296fbbab821b37afb43801599717076000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI modified the run_silhs_anvil_gust.csh runscript so that it runs for me on Anvil. 2020-09-10 00:51:16 -0500327658e08d899fd6d85296fbbab821b37afb4380I modified the run_silhs_anvil_gust.csh runscript so that it runseditrun_silhs_anvil_gust.cshpostprocessing/AMWG/remap_make_climo.cshpostprocessing/AMWG/diag140804.cshpostprocessing/AMWG/run_diag140804.cshpostprocessing/AMWG/climo_nco.shc2fb8c77cf8da01b7c033b81fdfe1aa780a43d2c1599717104000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the files necessary to run the AMWG postprocessing scripts on E3SM output files. 2020-09-10 00:51:44 -0500c2fb8c77cf8da01b7c033b81fdfe1aa780a43d2cI am adding the files necessary to run the AMWG postprocessing scripts onaddpostprocessing/AMWG/remap_make_climo.cshaddpostprocessing/AMWG/climo_nco.shaddpostprocessing/AMWG/diag140804.cshaddpostprocessing/AMWG/run_diag140804.cshdiagnostic_v2_0/E3SM_CLUBB_diag.py4c74649916c041d790b758b2db07a0017a6117cb1599717128000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWithin the context of my NGD CLUBB SILHS directory, I have changed the names, obsfilepath, etc., in E3SM_CLUBB_diag.py to be names and paths that work for me. 2020-09-10 00:52:08 -05004c74649916c041d790b758b2db07a0017a6117cbWithin the context of my NGD CLUBB SILHS directory, I have changed the names,editdiagnostic_v2_0/E3SM_CLUBB_diag.pyremap/make_climo.pyremap/remap.csh04351851f51480f71cc03a2f8ecb891bd40b6a941599717158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI committed some changes to my personal NGD CLUBB SILHS directory to set up for E3SM diags using my directory paths. 2020-09-10 00:52:38 -050004351851f51480f71cc03a2f8ecb891bd40b6a94I committed some changes to my personal NGD CLUBB SILHS directory to set upeditremap/make_climo.pyeditremap/remap.cshremap/remap_ne30.csh32895b80c4299b470d1ec24dc764f89684f29dcf1599717180000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI also changed the ne30 remapping file in my NGD CLUBB SILHS branch to use my specific paths. 2020-09-10 00:53:00 -050032895b80c4299b470d1ec24dc764f89684f29dcfI also changed the ne30 remapping file in my NGD CLUBB SILHS brancheditremap/remap_ne30.cshpostprocessing/e3sm_diags_env.ymlpostprocessing/run_e3sm_diags.pyda3bec3fec2d23fe62305de8e70c21f57d3107601599717206000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the environment file and run script for E3SM diags. 2020-09-10 00:53:26 -0500da3bec3fec2d23fe62305de8e70c21f57d310760I added the environment file and run script for E3SM diags.addpostprocessing/run_e3sm_diags.pyaddpostprocessing/e3sm_diags_env.ymlremap/remap_3h.cshremap/remap_ne30_3h.csh89c504822f84e3e75b4bdb89cdf530473a84aef71599717233000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am also changing these remapping files over to my directory paths. 2020-09-10 00:53:53 -050089c504822f84e3e75b4bdb89cdf530473a84aef7I am also changing these remapping files over to my directory paths.editremap/remap_3h.csheditremap/remap_ne30_3h.cshpostprocessing/AMWG/remap_make_climo.cshremap/make_climo.pydiagnostic_v2_0/E3SM_CLUBB_diag.pypostprocessing/run_e3sm_diags.pypostprocessing/AMWG/remap_make_climo_ne30.csh015d577ad11966e886ede5c2a9915211ecfd8bfc1599717261000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMinor changes to postprocessing files. 2020-09-10 00:54:21 -0500015d577ad11966e886ede5c2a9915211ecfd8bfcMinor changes to postprocessing files.addpostprocessing/AMWG/remap_make_climo_ne30.csheditpostprocessing/AMWG/remap_make_climo.csheditremap/make_climo.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditpostprocessing/run_e3sm_diags.pycomponents/cam/src/physics/cam/clubb_intr.F90c9b9ebfab024efa7d1e26cf0f4ce6b3492b331ef1599724823000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated E3SM to match recent changes made to CLUBB code. 2020-09-10 03:00:23 -0500c9b9ebfab024efa7d1e26cf0f4ce6b3492b331efI updated E3SM to match recent changes made to CLUBB code.editcomponents/cam/src/physics/cam/clubb_intr.F90nightly_test/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90eeb6b1aa17b832cb07d6506162212a183b80e8c41599724900000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed l_use_ice_latent from the code, following recent changes to CLUBB. 2020-09-10 03:01:40 -0500eeb6b1aa17b832cb07d6506162212a183b80e8c4I removed l_use_ice_latent from the code, following recent changes to CLUBB.editnightly_test/clubb_intr.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F902ea521aec916f5cebdd5cfc60a88bf926884c4941599724927000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating clubb_intr.F90 and subcol_SILHS.F90 based on recent changes to CLUBB code. 2020-09-10 03:02:07 -05002ea521aec916f5cebdd5cfc60a88bf926884c494I am updating clubb_intr.F90 and subcol_SILHS.F90 based on recenteditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/clubb_intr.F90faf2d25795506387337126eee3d2350458c649351599724951000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating E3SM-CLUBB for the addition of the l_partial_upwind_wp3 flag to CLUBB's config flags. 2020-09-10 03:02:31 -0500faf2d25795506387337126eee3d2350458c64935I am updating E3SM-CLUBB for the addition of the l_partial_upwind_wp3 flageditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F908fc6a01018896ccde798a69a6506d2ad204c7db61599725071000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the call to setup_pdf_parameters_api to pass in khzm, following recent changes to CLUBB. I also needed to move the loop that populates khzm (CLUBB levels) from khzm_in (E3SM levels) to before the call to setup_pdf_parameters_api. 2020-09-10 03:04:31 -05008fc6a01018896ccde798a69a6506d2ad204c7db6I altered the call to setup_pdf_parameters_api to pass in khzm,editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F9042c334c3b673c355e933caf92b4faa9e8e7fe3be1599725091000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging code to work with newest silhs update. larson-group/cam#129 2020-09-10 03:04:51 -050042c334c3b673c355e933caf92b4faa9e8e7fe3beChanging code to work with newest silhs update. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F906176efe7142eab8b679ed03c1eb5e7178ea5def81599725133000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPartially reverting last commit. The solution was implemented in silhs_api. larson-group/cam#129 2020-09-10 03:05:33 -05006176efe7142eab8b679ed03c1eb5e7178ea5def8Partially reverting last commit. The solution was implemented in silhs_api. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F900c03264d770b10fce936b2539baac9e6786d26e81599725162000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking compatible with newest clubb changes. larson-group/cam#129 2020-09-10 03:06:02 -05000c03264d770b10fce936b2539baac9e6786d26e8Making compatible with newest clubb changes. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2005.txtcomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2015_LUH2.txtcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.common36d61137a8389e458ca900f1ecfd821af7596b481599761979000http://carson.math.uwm.edu/jenkins/user/adivittorioadivittorioadivittorio@lbl.govBug fixes for land use translator and surface file creation Fixed an automatic file naming bug to remove an extra creation date. Fixed a makefile bug for a fortran compiler flag. Deleted two unnecessary files Changes to be committed: modified: ../land_use_translator/updateannuallanduse_v2.c deleted: landuse_timeseries_hist_simyr1850-2005.txt deleted: landuse_timeseries_hist_simyr1850-2015_LUH2.txt modified: src/Makefile.common 2020-09-10 11:19:39 -070036d61137a8389e458ca900f1ecfd821af7596b48Bug fixes for land use translator and surface file creationeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.cdeletecomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2005.txteditcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.commondeletecomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2015_LUH2.txtcomponents/mpas-ocean/cime_config/buildnml131265472d4673ec94c936b67d9dbe3a7c8d1bdb1599762160000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate the EC30to60E2r2 salinity restoring file name 2020-09-10 13:22:40 -0500131265472d4673ec94c936b67d9dbe3a7c8d1bdbUpdate the EC30to60E2r2 salinity restoring file nameeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml38b4edbfa2816d1d2922f5d6b7632d63756cd5251599762254000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet GM-kappa to 600 for EC30to60E2r2 G-cases 2020-09-10 13:24:14 -050038b4edbfa2816d1d2922f5d6b7632d63756cd525Set GM-kappa to 600 for EC30to60E2r2 G-caseseditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeac74ceecd34b2a971660e5f36121fc67486ed67a1599762621000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comcmake changes summit 2020-09-10 14:30:21 -0400ac74ceecd34b2a971660e5f36121fc67486ed67acmake changes summiteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmake94e6bdb812edd311dac339fa9acac2f1aa941efa1599764029000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comcmake change summit 2020-09-10 14:53:49 -040094e6bdb812edd311dac339fa9acac2f1aa941efacmake change summiteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/cam/src/physics/clubb/parameters_tunable.F90d819e97882d2f40733bb80d18d50651367d3b74d1599766528000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered parameters_tunable.F90 so that it looks more like the parameters_tunable.F90 that's in the CLUBB master repo again. It got a little jacked up from the merges. 2020-09-10 14:35:28 -0500d819e97882d2f40733bb80d18d50651367d3b74dI altered parameters_tunable.F90 so that it looks more like theeditcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/crm/crm_history.F90793e1146baf409b7d00519cc1e851490be1a60db1599769530000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govClean up crm_history_init modified: components/cam/src/physics/crm/crm_history.F90 2020-09-10 13:25:30 -0700793e1146baf409b7d00519cc1e851490be1a60dbClean up crm_history_initeditcomponents/cam/src/physics/crm/crm_history.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/clubb_api_module.F90e9241c8459bb2a9d3d1dc6c55b204cea01bbdbe51599771678000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing compilation errors in this branch. 2020-09-10 16:01:18 -0500e9241c8459bb2a9d3d1dc6c55b204cea01bbdbe5Fixing compilation errors in this branch.editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/sam/crm_module.F906a84b2c651f669218015d576816a7edb4ec5d0ba1599772134000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix MMF timing factor output Previously this output variable TIMINGF was always 1 because the value increment wasin the wrong place modified: sam/crm_module.F90 modified: samxx/timeloop.cpp 2020-09-10 14:08:54 -07006a84b2c651f669218015d576816a7edb4ec5d0baFix MMF timing factor outputeditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/elm/bld/configurecomponents/cice/cime_config/config_component.xml325ebd80c8bca32e7a1e8ff6560840e4973ab6ff1599773424000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMinor clm to elm changes. Change src.clm to src.elm in configure (pointed out by GautumB). Chnage one ref to CLM in old CICE config_component. 2020-09-10 16:30:24 -0500325ebd80c8bca32e7a1e8ff6560840e4973ab6ffMinor clm to elm changes.editcomponents/elm/bld/configureeditcomponents/cice/cime_config/config_component.xmlcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/crm.cppcomponents/cam/src/physics/crm/crm_output_module.F90components/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/samxx/fortran/crm_output_module.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/crm_history.F90components/cam/src/physics/crm/samxx/pre_timeloop.cppb993ac82cdb1d9b42acf8edee369e5eb3a42c01d1599774606000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange timing_factor to subcycle_factor Also change the history variable from TIMINGF to MMF_SUBCYCLE_FAC modified: crm_history.F90 modified: crm_output_module.F90 modified: crm_physics.F90 modified: sam/crm_module.F90 modified: samxx/cpp_interface_mod.F90 modified: samxx/crm.cpp modified: samxx/fortran/crm_module.F90 modified: samxx/fortran/crm_output_module.F90 modified: samxx/post_timeloop.cpp modified: samxx/pre_timeloop.cpp modified: samxx/test/cpp_driver.F90 modified: samxx/test/fortran_driver.F90 modified: samxx/timeloop.cpp modified: samxx/vars.cpp modified: samxx/vars.h 2020-09-10 14:50:06 -0700b993ac82cdb1d9b42acf8edee369e5eb3a42c01dChange timing_factor to subcycle_factoreditcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/cam/src/physics/crm/samxx/fortran/crm_output_module.F90editcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90editcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90editcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/crm_history.F90editcomponents/cam/src/physics/crm/crm_output_module.F90editcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/vars.cppcime19ad35e9a0fa715b08588dd5ccf402d8fd2f88d41599774872000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate CIME to master to bring in PR#3701 from ESMCI/jonbob/add-new-ocnice-grids 2020-09-10 16:54:32 -050019ad35e9a0fa715b08588dd5ccf402d8fd2f88d4Update CIME to master to bring in PR#3701 from ESMCI/jonbob/add-new-ocnice-gridseditcimecomponents/cam/src/physics/crm/crm_history.F90components/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_cam86056ad9e5309932f22b3085532fe3e07180b5f81599775899000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange SP* history variables to MMF_* modified: components/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_cam modified: components/cam/src/physics/crm/crm_history.F90 2020-09-10 15:11:39 -070086056ad9e5309932f22b3085532fe3e07180b5f8Change SP* history variables to MMF_*editcomponents/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_cameditcomponents/cam/src/physics/crm/crm_history.F90components/homme/src/preqx_kokkos/cxx/HyperviscosityFunctorImpl.cppcomponents/homme/src/share/cxx/EulerStepFunctorImpl.hppb0d93c139a8d4ece4f0e100901046071cde1cbdc1599777394000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing errors reported by valgrind. One (ESF) was relatively innocuous, but the other (HVF) caused the code to crash if the vector length was larger than 1. 2020-09-10 16:36:34 -0600b0d93c139a8d4ece4f0e100901046071cde1cbdcHomme: fixing errors reported by valgrind.editcomponents/homme/src/share/cxx/EulerStepFunctorImpl.hppeditcomponents/homme/src/preqx_kokkos/cxx/HyperviscosityFunctorImpl.cppcomponents/homme/src/share/cxx/prim_driver.cpp0d9c93f9a3d9ca7f14810051b13f36aa71b4ca5e1599794572000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing bug related to diagnostic calls in prim_driver.cpp 2020-09-10 21:22:52 -06000d9c93f9a3d9ca7f14810051b13f36aa71b4ca5eHomme: fixing bug related to diagnostic calls in prim_driver.cppeditcomponents/homme/src/share/cxx/prim_driver.cppcomponents/homme/cmake/machineFiles/anvil-bfb.cmake0c0b56600c728067f8732930efcdc6dc767d63611599797415000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comanvil cmake changes 2020-09-10 23:10:15 -05000c0b56600c728067f8732930efcdc6dc767d6361anvil cmake changeseditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/src/preqx_kokkos/cxx/Diagnostics.cppcomponents/homme/src/preqx_kokkos/cxx/CamForcing.cppd4c61024ba87ffd058a6c7711d651a11944322a51599797772000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: couple of fixes in preqx_kokkos to match preqx implementation - removed ps_v from diagnostics routines - when applying ps forcing, compute forcing without dt factor 2020-09-10 22:16:12 -0600d4c61024ba87ffd058a6c7711d651a11944322a5Homme: couple of fixes in preqx_kokkos to match preqx implementationeditcomponents/homme/src/preqx_kokkos/cxx/CamForcing.cppeditcomponents/homme/src/preqx_kokkos/cxx/Diagnostics.cppcomponents/mpas-seaice/cime_config/buildnmlcime_config/allactive/config_pesall.xmlcime_config/config_grids.xmlcomponents/mpas-ocean/cime_config/buildnml9470716c6be80e92323a15b1de9f67763003ef1f1599799274000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds ICG support for EC30to60E2r02 2020-09-10 23:41:14 -05009470716c6be80e92323a15b1de9f67763003ef1fadds ICG support for EC30to60E2r02editcime_config/config_grids.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmleditcime_config/allactive/config_pesall.xmlcomponents/homme/src/preqx_kokkos/config.h.cmake.incomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/preqx/config.h.cmake.incomponents/homme/src/preqx/CMakeLists.txt5be0fdd8b4c3192fc8135f9a2f5ca565853158261599807904000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Adding HOMMEXX_BFB_TESTING to preqx and preqx_kokkos config files 2020-09-11 01:05:04 -06005be0fdd8b4c3192fc8135f9a2f5ca56585315826Homme: Adding HOMMEXX_BFB_TESTING to preqx and preqx_kokkos config fileseditcomponents/homme/src/preqx_kokkos/config.h.cmake.ineditcomponents/homme/src/preqx/CMakeLists.txteditcomponents/homme/src/preqx/config.h.cmake.ineditcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppac5ae5e448e053ce1044104dc1ead0891053255c1599808081000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in preqx_kokkos caar functor The eta_dot_dpdn buffer was used incorrectly when computing dp3d. In particular, we were allowing an uninited value (last interface) to pollute the last midpoint during the final dp3d update. Note: this bug showed up only if NUM_LEV=NUM_LEV_P. 2020-09-11 01:08:01 -0600ac5ae5e448e053ce1044104dc1ead0891053255cHomme: bug fix in preqx_kokkos caar functoreditcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppcomponents/cam/bld/namelist_files/namelist_definition.xml056f587727a79c92cddaa09a0ac04742b14a8f6a1599811492000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI committed all the updated CLUBB namelist variables to namelist_definition.xml. 2020-09-11 03:04:52 -0500056f587727a79c92cddaa09a0ac04742b14a8f6aI committed all the updated CLUBB namelist variables toeditcomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/compose/CMakeLists.txt53cac64928e77268556124bc8ed8bad2e0ef9a121599844020000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comtypo 2020-09-11 12:07:00 -050053cac64928e77268556124bc8ed8bad2e0ef9a12typoeditcomponents/homme/src/share/compose/CMakeLists.txtcomponents/mpas-source457e040c11242d8eb5df5a9e7d6f8ba8558a30f21599845984000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: GM/Redi and surface buoyancy fixes 2020-09-11 10:39:44 -0700457e040c11242d8eb5df5a9e7d6f8ba8558a30f2Update mpas-source: GM/Redi and surface buoyancy fixeseditcomponents/mpas-sourcecomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist74dca88c89ddba4f3fb90519d4a698b0ae4622ed1599848488000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate to E3SM scrpts corresponding to mpas-ocean Registry changes 2020-09-11 13:21:28 -050074dca88c89ddba4f3fb90519d4a698b0ae4622edUpdate to E3SM scrpts corresponding to mpas-ocean Registry changeseditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90postprocessing/AMWG/diag140804.cshdiagnostic_v2_0/E3SM_CLUBB_diag.pytau_clean_anvil.cshrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/stats_zm_module.F904a037f46ee51613c70e265350413560e5c5f81ff1599850357000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanges to make everything run. 2020-09-11 13:52:37 -05004a037f46ee51613c70e265350413560e5c5f81ffChanges to make everything run.editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90edittau_clean_anvil.csheditpostprocessing/AMWG/diag140804.csheditrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/stats_zm_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F90f6a2d379f87d954cc0e9ca27225d57e3ff4eb2b51599851382000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBorrowing code from the master for namelist variables and printing of parameters and flags. 2020-09-11 14:09:42 -0500f6a2d379f87d954cc0e9ca27225d57e3ff4eb2b5Borrowing code from the master for namelist variables and printingeditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F9060208486d315d03df6b5d86017861cac9e8bfe3a1599852659000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a compilation error. 2020-09-11 14:30:59 -050060208486d315d03df6b5d86017861cac9e8bfe3aFixed a compilation error.editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml766bfc3aafb1406726dce7626cc61f51e02a27471599856016000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet mocStreamfunctionAM off by default for new EC30to60E2r2 mesh 2020-09-11 15:26:56 -0500766bfc3aafb1406726dce7626cc61f51e02a2747Set mocStreamfunctionAM off by default for new EC30to60E2r2 mesheditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/allactive/config_pesall.xmlcomponents/mpas-source5d1d20924b52672b28b61b018842d9be11d135901599856523000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds default layout for EC6030E2r2 for compy 2020-09-11 15:35:23 -05005d1d20924b52672b28b61b018842d9be11d13590adds default layout for EC6030E2r2 for compyeditcomponents/mpas-sourceeditcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xmlcomponents/mpas-sourcea7b566099abae6311c0e201f19ddd64b8f936df81599858671000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comRevert "adds default layout for EC6030E2r2 for compy" This reverts commit 5d1d20924b52672b28b61b018842d9be11d13590. 2020-09-11 16:11:11 -0500a7b566099abae6311c0e201f19ddd64b8f936df8Revert "adds default layout for EC6030E2r2 for compy"editcomponents/mpas-sourceeditcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml435744450e45272d901e6bfd60bb5ae25688ec851599858732000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds default layout for EC6030E2r2 for compy 2020-09-11 16:12:12 -0500435744450e45272d901e6bfd60bb5ae25688ec85adds default layout for EC6030E2r2 for compyeditcime_config/allactive/config_pesall.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_batch.xmlcime_config/machines/config_machines.xmld9cdfe1fd9713fb9909f7f3a6f365e32ba936c1b1599861360000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable E3SM on Tulip 2020-09-11 16:56:00 -0500d9cdfe1fd9713fb9909f7f3a6f365e32ba936c1bEnable E3SM on Tulipeditcime_config/machines/config_batch.xmleditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/cam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.csh4d7bd871f537b4f71c885d2bba3ebe0dcf4fe77a1599933435000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the remaining changes to parameter values necessary to reproduce the parameter settings that are found in Zhun's branch (which uses an older version of CLUBB). 2020-09-12 12:57:15 -05004d7bd871f537b4f71c885d2bba3ebe0dcf4fe77aI am making the remaining changes to parameter values necessary toeditcomponents/cam/src/physics/cam/clubb_intr.F90editrun_silhs_anvil_gust.cshcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/silhs/silhs_api_module.F90d9ec1c8503a6dab58003b086b7ddf386656d88d31599933592000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the changes necessary to bring back the Lscale averaging code that used to be found in SILHS. This is being done because Zhun's results were based on using this code, and we went to check that the new results (after the CLUBB/SILHS upgrade) match the old results as closely as possible. This change can always be reverted later. 2020-09-12 12:59:52 -0500d9ec1c8503a6dab58003b086b7ddf386656d88d3I am committing the changes necessary to bring back the Lscale averagingeditcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90cime_config/tests.pycime_config/config_archive.xmla25869e457eaad86697dc3a5638a8e583d0ecb8e1600024214000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govA few more clm to elm mods Edit config_archive.xml to define elm. Change MALI test from CLM45 to ELM in tests.py 2020-09-13 14:10:14 -0500a25869e457eaad86697dc3a5638a8e583d0ecb8eA few more clm to elm modseditcime_config/tests.pyeditcime_config/config_archive.xmlcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_clmcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_elmcime_config/testmods_dirs/allactive/v1cmip6/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_elmcime_config/testmods_dirs/allactive/v1bgceca/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_elmcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_clmcime_config/testmods_dirs/allactive/v1cmip6/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_elmcime_config/testmods_dirs/allactive/v1bgceca/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_elm25fb8ee710e61f69ef0cb344a3864d0c777411291600111041000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename user_nl_clm in testdefs Rename all instances of user_nl_clm to user_nl_elm in all the testmods_dirs in cam, elm, allactive 2020-09-14 14:17:21 -050025fb8ee710e61f69ef0cb344a3864d0c77741129Rename user_nl_clm in testdefsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_clmaddcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_clmaddcime_config/testmods_dirs/allactive/v1bgceca/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_clmaddcime_config/testmods_dirs/allactive/v1cmip6/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1cmip6/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_clmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_clmaddcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1bgceca/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_clmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_elmaddcime_config/testmods_dirs/allactive/v1bgc/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_elmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1bgc/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_elmcime_config/config_archive.xml567b2a58ee84d2a7624738c7c7ab6b84e0b194ee1600113217000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename clm to elm in config_archive Rename clm to elm in config_archive.xml. This also requires updating the filenames output by elm to include "elm". 2020-09-14 14:53:37 -0500567b2a58ee84d2a7624738c7c7ab6b84e0b194eeRename clm to elm in config_archiveeditcime_config/config_archive.xmlcomponents/elm/src/main/restFileMod.F90components/elm/src/main/histFileMod.F90833a1d08ac6b8804355afdf02f39411eebe61e2f1600113399000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange ELM output to include "elm" string Change the history and restart files for ELM to include "elm" instead of "clm2" in their names. This is necessary for short-term archiving to work. 2020-09-14 14:56:39 -0500833a1d08ac6b8804355afdf02f39411eebe61e2fChange ELM output to include "elm" stringeditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/restFileMod.F90cime0730235f3639cdf779e642432c28718ec36f68431600133316000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime branch hash Update the hash on the cime branch needed for name change. 2020-09-14 20:28:36 -05000730235f3639cdf779e642432c28718ec36f6843Update cime branch hasheditcimecomponents/mpas-source63f23113a722ae975a03437d5689dae71ce70c5a1600188478000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Added GPU macros to seaice core 2020-09-15 11:47:58 -050063f23113a722ae975a03437d5689dae71ce70c5aUpdate mpas-source: Added GPU macros to seaice coreeditcomponents/mpas-sourceexternals/scorpioexternals/scorpio_classicde50be5154ea2e2b1192f8fdeb616f286fcd75e91600198968000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio ver 1.1.3 Updating Scorpio and Scorpio classic to version 1.1.3 . This version contains, * Fixes for issues writing text variables with the PGI compiler * Fixes for incompatibility between text variables written out using Scorpio and Scorpio classic * Support for the MPI serial library 2020-09-15 14:42:48 -0500de50be5154ea2e2b1192f8fdeb616f286fcd75e9Updating to Scorpio ver 1.1.3editexternals/scorpioeditexternals/scorpio_classiccomponents/homme/cmake/machineFiles/summit-modules/load-modules-gpucomponents/homme/cmake/machineFiles/summit-modules/load-modules-p9422e17dd915a03f197874da20275e1757c7978c41600200117000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comadding summit modules 2020-09-15 16:01:57 -0400422e17dd915a03f197874da20275e1757c7978c4adding summit modulesaddcomponents/homme/cmake/machineFiles/summit-modules/load-modules-gpuaddcomponents/homme/cmake/machineFiles/summit-modules/load-modules-p9components/homme/cmake/HommeMacros.cmakecomponents/homme/test_execs/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/cmake_variables.shcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/test/reg_test/run_tests/testing-utils.shcomponents/homme/test/reg_test/run_tests/createRunScripts.shc0d6e4646f6c73a5fff6c92d976e8b190721d5441600203063000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.commods to cmake and bash scripts to have flexibility in run/test scripts for modules, omp options, jsrun command 2020-09-15 16:51:03 -0400c0d6e4646f6c73a5fff6c92d976e8b190721d544mods to cmake and bash scripts to have flexibility in run/test scripts for modules, omp options, jsrun commandeditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/test/reg_test/run_tests/createRunScripts.sheditcomponents/homme/test/reg_test/run_tests/cmake_variables.sheditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/elm/src/main/restFileMod.F90components/elm/src/main/clm_varctl.F90components/elm/src/main/histFileMod.F9090d61ea78e344e45d25c45ddb91e097f160b0b941600224600000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate output file metdata with ELM Remove refs to CLM and CLM4.0 in history and restart global attributes and replace with ELM. 2020-09-15 19:50:00 -070090d61ea78e344e45d25c45ddb91e097f160b0b94Update output file metdata with ELMeditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/clm_varctl.F90REPLAY/README.txtc443d307c9b67592501135b1df0da356429bc93f1600277545000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate README.txt 2020-09-16 12:32:25 -0500c443d307c9b67592501135b1df0da356429bc93fUpdate README.txteditREPLAY/README.txtrun_e3sm_scm_REPLAY.csh7de5ed78c54e0c8c77aa1442551e2d5bf120480c1600277575000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA replay SCM run script. 2020-09-16 12:32:55 -05007de5ed78c54e0c8c77aa1442551e2d5bf120480cA replay SCM run script.addrun_e3sm_scm_REPLAY.cshrun_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/physics_types.F90e53675a0e7c842505ab38bc2cfcd47e2b867569f1600277657000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduProfessor and I added lines of code in order to find out the negative spike of T. 2020-09-16 12:34:17 -0500e53675a0e7c842505ab38bc2cfcd47e2b867569fProfessor and I added lines of code in order to find out the negative spike of T.editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/physics_types.F90run_silhs_anvil_gust.csh2f64d6a2b815026867784b3c2b1160a0e5857e6e1600277786000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSubmit run should be kept as true. 2020-09-16 12:36:26 -05002f64d6a2b815026867784b3c2b1160a0e5857e6eSubmit run should be kept as true.editrun_silhs_anvil_gust.cshcomponents/cam/src/physics/crm/samxx/fortran/uvw.F90components/cam/src/physics/crm/samxx/fortran/openacc_utils.F90components/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/samxx/fortran/advect_all_scalars.F90components/cam/src/physics/crm/samxx/fortran/bound_exchange.F90components/cam/src/physics/crm/samxx/fortran/crmtracers.F90components/cam/src/physics/crm/samxx/fortran/crm_input_module.F90components/cam/src/physics/crm/samxx/fortran/periodic.F90components/cam/src/physics/crm/samxx/fortran/random.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90components/cam/src/physics/crm/samxx/fortran/buoyancy.F90components/cam/src/physics/crm/samxx/fortran/kurant.F90components/cam/src/physics/crm/samxx/fortran/diagnose.F90components/cam/src/physics/crm/samxx/fortran/crm_ecpp_output_module.F90components/cam/src/physics/crm/openacc_utils.F90components/cam/src/physics/crm/samxx/fortran/domain.F90components/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/sam/fftpack5.F90components/cam/src/physics/crm/samxx/fortran/advect2_mom_xy.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar3D.F90externals/YAKLcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod2D.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90components/cam/src/physics/crm/samxx/fortran/RNG_MT.F90components/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90components/cam/src/physics/crm/samxx/test/fortran3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/ecppvars.F90components/cam/src/physics/crm/samxx/fortran/crmdims.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_proc.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/samxx/fortran/setparm.F90components/cam/src/physics/crm/samxx/fortran/adams.F90components/cam/src/physics/crm/samxx/fortran/coriolis.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/fortran/zero.F90components/cam/src/physics/crm/samxx/fortran/fft.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90components/cam/src/physics/crm/samxx/test/fortran2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/advect_mom.F90components/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/task_util_NOMPI.F90components/cam/src/physics/crm/samxx/fortran/crmsurface.F90components/cam/src/physics/crm/samxx/fortran/bound_duvdt.F90components/cam/src/physics/crm/samxx/fortran/press_grad.F90components/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar2D.F90components/cam/src/physics/crm/samxx/fortran/boundaries.F90components/cam/src/physics/crm/samxx/fortran/atmosphere.F90components/cam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod3D.F90components/cam/src/physics/crm/samxx/fortran/pressure.F90components/cam/src/physics/crm/samxx/fortran/gammafff.ccomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90components/cam/src/physics/crm/samxx/fortran/grid.F90components/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advection.F90components/cam/src/physics/crm/samxx/fortran/forcing.F90components/cam/src/physics/crm/samxx/fortran/sat.F90components/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar.F90components/cam/src/physics/crm/samxx/fortran/vars.F90components/cam/src/physics/crm/RNG_MT.F90components/cam/src/physics/crm/samxx/fortran/utils.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar.F90components/cam/src/physics/crm/samxx/fortran/task_init.F90components/cam/src/physics/crm/samxx/fortran/setperturb.F90components/cam/src/physics/crm/samxx/fortran/params.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90components/cam/src/physics/crm/samxx/test/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90components/cam/src/physics/crm/samxx/fortran/press_rhs.F90components/cam/src/physics/crm/samxx/test/perf_mod.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/fortran/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/crm_state_module.F90components/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/damping.F90components/cam/src/physics/crm/samxx/fortran/ice_fall.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/samxx/fortran/crm_output_module.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2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the standalone tests, and using sam/ fortran code rather than custom fortran code 2020-09-16 15:17:38 -040085bf722522eaed81c3397569d3601c0fd2361232Reviving the standalone tests, and using sam/ fortran code rather than custom fortran 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to YAKL SimpleBounds for lower register usage on the GPU. Bug fix for previous implementation of crm_clear_rh. 2020-09-16 15:17:38 -040004b1150e676b707c410d294ba4fab6706a4ac657Switching to YAKL SimpleBounds for lower register usage on the GPU. Bug fix for previous implementation of crm_clear_rh.editcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/mpas-source2dd5d6a1f49edee129ad034acb5a60010fb8ae951600288394000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: improved sea ice testing 2020-09-16 15:33:14 -05002dd5d6a1f49edee129ad034acb5a60010fb8ae95Update mpas-source: improved sea ice testingeditcomponents/mpas-sourcecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commandscomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_camcime_config/tests.pya54c48835266878d002524135e6e3480d10bab231600289484000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comremove crm_gpu test mod modified: cime_config/tests.py deleted: components/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commands deleted: components/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_cam 2020-09-16 16:51:24 -0400a54c48835266878d002524135e6e3480d10bab23remove crm_gpu test modeditcime_config/tests.pydeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commandsdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_camcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F906de8dfc340ec1f02c8086e59e61af15bc807672c1600289646000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix saxx cpp_driver modified: components/cam/src/physics/crm/samxx/test/cpp_driver.F90 2020-09-16 16:54:06 -04006de8dfc340ec1f02c8086e59e61af15bc807672cFix saxx cpp_drivereditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/README.mdd7b251e8f024137a2ccddadb13b20fd7caef1fdd1600289747000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate standalone test notes and env modified: components/cam/src/physics/crm/samxx/README.md modified: components/cam/src/physics/crm/samxx/test/build/summit_gpu.sh 2020-09-16 16:55:47 -0400d7b251e8f024137a2ccddadb13b20fd7caef1fddUpdate standalone test notes and enveditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/README.mdcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppe3b5cc4bb351f51636f1ea2a963cb24a1f841ca71600366627000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in preqx_kokkos, regarding un-initialized buffers When HOMMEXX_BFB_TESTING is on, buffers are inited to random values, which caused preqx_kokkos to get garbage if rsplit>0, due to eta_dot_dpdn not being computed, but still used to update dp3d. 2020-09-17 12:17:07 -0600e3b5cc4bb351f51636f1ea2a963cb24a1f841ca7Homme: bug fix in preqx_kokkos, regarding un-initialized bufferseditcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppcomponents/cam/src/dynamics/se/dyn_grid.F90ce9e2764b3046fab06c695572a81099702ad79221600376663000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange area_p to area modified: components/cam/src/dynamics/se/dyn_grid.F90 2020-09-17 14:04:23 -0700ce9e2764b3046fab06c695572a81099702ad7922Change area_p to areaeditcomponents/cam/src/dynamics/se/dyn_grid.F90cimefde80e73561d3d241d15deecf2082868f055ca131600376815000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRebase cime changes Rebase cime changes on to 84df62862c26a9 which is what E3SM is currently using on master. 2020-09-17 16:06:55 -0500fde80e73561d3d241d15deecf2082868f055ca13Rebase cime changeseditcimecime_config/machines/Depends.ibmgpu.cmakecime_config/machines/Depends.pgigpu.cmakecime_config/machines/Depends.pgigpu3344db21fcc39ac06fe6de182a5111b3e172e5541600453744000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd MPAS-Seaice files for OpenMP or OpenACC offload 2020-09-18 13:29:04 -05003344db21fcc39ac06fe6de182a5111b3e172e554Add MPAS-Seaice files for OpenMP or OpenACC offloadeditcime_config/machines/Depends.ibmgpu.cmakeeditcime_config/machines/Depends.pgigpu.cmakeeditcime_config/machines/Depends.pgigpucime_config/machines/Depends.pgigpu.cmaked0a805ced5ca7c3c1fbae5f501ffefabe25462e11600453744000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate paths for moved files 2020-09-18 13:29:04 -0500d0a805ced5ca7c3c1fbae5f501ffefabe25462e1Update paths for moved fileseditcime_config/machines/Depends.pgigpu.cmakecime_config/machines/config_machines.xml2f4d3ecc25285056238e99585ad508744dd61ea31600453871000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd netcdf to Tulip's LD_LIBRARY_PATH 2020-09-18 13:31:11 -05002f4d3ecc25285056238e99585ad508744dd61ea3Add netcdf to Tulip's LD_LIBRARY_PATHeditcime_config/machines/config_machines.xmlcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/testing-utils.shd3483227ee015d7d9a13fe6e076f67a998f70ca11600455518000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comincremental: fixed flags for kokkos target; changes to have only kokkos targets on summit 2020-09-18 14:58:38 -0400d3483227ee015d7d9a13fe6e076f67a998f70ca1incremental: fixed flags for kokkos target; changes to have only kokkos targets on summiteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/CMakeLists.txteditcomponents/homme/test_execs/CMakeLists.txtcomponents/elm/cime_config/buildnmlc88c39a37dab701505158dc0fd9f2cb26c3867ab1600456842000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRemove debugging lines in elm buildnml Remove debugging lines in elm buildnml that were accidentally committed. 2020-09-18 14:20:42 -0500c88c39a37dab701505158dc0fd9f2cb26c3867abRemove debugging lines in elm buildnmleditcomponents/elm/cime_config/buildnmlcime_config/allactive/config_pesall.xml12f1bc52f673093cfc635eeb5d4c364e9b5ef88b1600487285000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in a few pelayout entires Replace CLM with ELM in a few pelayout entires that were missed in the initial switch. Spotted by Xue Zheng. 2020-09-18 20:48:05 -070012f1bc52f673093cfc635eeb5d4c364e9b5ef88bReplace CLM with ELM in a few pelayout entireseditcime_config/allactive/config_pesall.xmlcomponents/homme/src/share/sl_advection.F90d43c4232485527ad47b046279b32d5050e7b6c2a1600636049000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Remove some debug-build output. 2020-09-20 14:07:29 -0700d43c4232485527ad47b046279b32d5050e7b6c2aHomme: Remove some debug-build output.editcomponents/homme/src/share/sl_advection.F90components/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/test/reg_test/run_tests/test-list.cmakecomponents/homme/test/reg_test/run_tests/testing-utils.sh0769952102d5fd0c601a1d875418139721a376431600639844000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comfinish summit scripts 2020-09-20 18:10:44 -04000769952102d5fd0c601a1d875418139721a37643finish summit scriptseditcomponents/homme/test/reg_test/run_tests/test-list.cmakeeditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/cam/src/dynamics/se/restart_dynamics.F90357633eef1c99cb30de7553e25a95129f88beb651600641815000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Remove dynamics' Q fields from SE dycore restart, leaving only Qdp. The SE dycore already was ignoring the Q values, instead recomputing Q in prim_init2. This saves the time in writing and reading pcnsnt 3D fields. 2020-09-20 15:43:35 -0700357633eef1c99cb30de7553e25a95129f88beb65EAM: Remove dynamics' Q fields from SE dycore restart, leaving only Qdp.editcomponents/cam/src/dynamics/se/restart_dynamics.F90components/homme/cmake/machineFiles/anvil-bfb.cmake00df527d05c06ea26b924ebb6124d4d9d1147ec01600644815000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchange options for anvil bfb 2020-09-20 18:33:35 -050000df527d05c06ea26b924ebb6124d4d9d1147ec0change options for anvil bfbeditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmld4f5ad8e2892100e22d6cfd412cf35a6f8edf66f1600658925000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.govaddition of snicar for land and sea ice, 5 sea ice snow layers, and ITD snow redistribution 2020-09-20 20:28:45 -0700d4f5ad8e2892100e22d6cfd412cf35a6f8edf66faddition of snicar for land and sea ice, 5 sea ice snow layers, and ITD snow redistributioneditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/cam/src/physics/crm/samxx/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shbc9ecec54b8f36b192bbeae0c79df5794e99bc7f1600710083000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.commodify standalone conda commands modified: components/cam/src/physics/crm/samxx/README.md modified: components/cam/src/physics/crm/samxx/test/build/summit_cpu.sh modified: components/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sh modified: components/cam/src/physics/crm/samxx/test/build/summit_gpu.sh 2020-09-21 13:41:23 -0400bc9ecec54b8f36b192bbeae0c79df5794e99bc7fmodify standalone conda commandseditcomponents/cam/src/physics/crm/samxx/README.mdeditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/params_kind.F90components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/sam/crm_module.F908fe58a140d0541eab97b86865044950f754586e71600723128000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCentralized definition of r8 for CRM code modified: components/cam/src/physics/crm/params_kind.F90 modified: components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90 modified: components/cam/src/physics/crm/sam/accelerate_crm.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 2020-09-21 17:18:48 -04008fe58a140d0541eab97b86865044950f754586e7Centralized definition of r8 for CRM codeeditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/sam/accelerate_crm.F90editcomponents/cam/src/physics/crm/params_kind.F90editcomponents/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/openacc_utils.F906655852d82f0e72b9790f4fc5c0e4538921e13b31600724557000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments about private/public modified: components/cam/src/physics/crm/openacc_utils.F90 2020-09-21 17:42:37 -04006655852d82f0e72b9790f4fc5c0e4538921e13b3Address PR comments about private/publiceditcomponents/cam/src/physics/crm/openacc_utils.F90cime_config/allactive/config_pesall.xml3710392d0de834064efedf3eba4ecd04401bd07b1600728048000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate compy L pe-layout for trigrid with EC30to60 2020-09-21 17:40:48 -05003710392d0de834064efedf3eba4ecd04401bd07bUpdate compy L pe-layout for trigrid with 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cam to eam Rename the cam directory to eam. 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submodule location for cosp2 and rrtmgp externals Change submodule location for cosp2 and rrtmgp externals and set hashes to same version as master. 2020-09-21 21:36:29 -0500eb0092f252ea4e91916566a7a6e57ffa34078ca6Change submodule location for cosp2 and rrtmgp 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ts/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/shell_commands8536a3269cd5cda1e0e7833445377615c964e7861600742900000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename cam testmods to eam Rename cam/cime_config/testdefs/testmods_dirs/cam to eam/cime_config/testdefs/testmods_dirs/eam Also rename user_nl_cam to user_nl_eam 2020-09-21 21:48:20 -05008536a3269cd5cda1e0e7833445377615c964e786Rename cam testmods to 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_mass/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/shell_commandsaddcomponents/eam/cime_config/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/chem_pp/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosplite_nhtfrq5/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cam5_port/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rtm_null/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype1/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/oldoptics/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype4/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_elmdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype1/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl_pg2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype1/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_pg2/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype1/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/gust_param/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/hommexx/shell_commandsdeletecomponents/eam/cime_config/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype0/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosplite/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/bench/noio/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosp/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/clubb_only/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/bench/noio/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_cam96bddddeb61328565be1067446eed5f609fa8f3c1600744266000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename user_nl_cams in testmods Rename all the user_nl_cam files in the eam testmods to user_nl_eam 2020-09-21 22:11:06 -050096bddddeb61328565be1067446eed5f609fa8f3cRename user_nl_cams in testmodsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camcomponents/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/RNG_MT.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/sam/crm_module.F90122993dcb55e278dfba4cd9a0cff6553a1265f381600785569000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments modified: components/cam/src/physics/crm/RNG_MT.F90 modified: components/cam/src/physics/crm/crm_rad_module.F90 modified: components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90 modified: components/cam/src/physics/crm/sam/accelerate_crm.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 2020-09-22 10:39:29 -0400122993dcb55e278dfba4cd9a0cff6553a1265f38Address PR commentseditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/sam/accelerate_crm.F90editcomponents/cam/src/physics/crm/RNG_MT.F90editcomponents/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90editcomponents/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90externals/scorpio_classicexternals/scorpiocomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.shcomponents/mpas-sourcecomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sh2334bbc1ca97b9ac1a733b94ba6859c5413791f61600790265000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govUpdating standalone framework 2020-09-22 11:57:45 -04002334bbc1ca97b9ac1a733b94ba6859c5413791f6Updating standalone frameworkeditcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shaddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_gnu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sheditexternals/scorpioeditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90deletecomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shaddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.sheditexternals/scorpio_classiceditcomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.sheditcomponents/mpas-sourcecomponents/mpas-sourceaebf18d2378e96e076e4de106b1d82dd5eabe84b1600793535000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fix OMP Directives and Loop Bounds in Ocean 2020-09-22 09:52:15 -0700aebf18d2378e96e076e4de106b1d82dd5eabe84bupdate mpas-source: Fix OMP Directives and Loop Bounds in Oceaneditcomponents/mpas-sourcecomponents/cam/src/physics/crm/params_kind.F90e71df1e6cad8f5cd608ee60c04ab4f9f2044d7ea1600795388000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govFixing a standalone bug with params_kind.F90 2020-09-22 13:23:08 -0400e71df1e6cad8f5cd608ee60c04ab4f9f2044d7eaFixing a standalone bug with params_kind.F90editcomponents/cam/src/physics/crm/params_kind.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/setup_clubb_pdf_params.F9084befb8fe31b3912a873a6b6e1877712a9ff76d31600801138000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed setup_clubb_pdf_params.F90 and latin_hypercube_driver_module.F90 so that the stats code loops over stat_update_var_pt instead of making a call to stat_update_var. This is done because SILHS to has a different number of vertical levels than CLUBB in E3SM-CLUBB-SILHS. 2020-09-22 13:58:58 -050084befb8fe31b3912a873a6b6e1877712a9ff76d3I changed setup_clubb_pdf_params.F90 and latin_hypercube_driver_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/setup_clubb_pdf_params.F90cimecomponents/eam/cime_config/config_component.xmlcomponents/eam/cime_config/config_compsets.xmlcime_config/tests.pycomponents/eam/cime_config/buildnmlcomponents/eam/cime_config/config_pes.xmlcomponents/eam/bld/configurecomponents/eam/cime_config/buildlibcomponents/eam/bld/build-namelistbae3d49c850db1b21ff96320e0836da9813627191600802220000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename cam to eam in CIME Do all renaming in CIME pieces necessary to change cam to eam Update config_files, commit to a branch and update cime submodule. Rename CAM and CAM5 to EAM in all F compsets This and below lets e3sm_atm_developer tests pass the setup phase with the new name. Rename all compsets in eam/cime_config/config_compsets.xml and references to them in config_components.xml, also config_pes.xml (which isn't used). Edit eam buildnml, buildlib, configure and build-namelist to use "eam" in some variable names including eamconf_dir, eam.input_data_list. Change "ERROR cam.buildexe" to "ERROR eam buildlib" Change "CAM" to "EAM" in some comments and error messages. Also remove all the CAM4 compsets. 2020-09-22 14:17:00 -0500bae3d49c850db1b21ff96320e0836da981362719Rename cam to eam in CIMEeditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_component.xmleditcimeeditcomponents/eam/cime_config/buildlibeditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/bld/configureeditcime_config/tests.pyeditcomponents/eam/cime_config/buildnmleditcomponents/eam/cime_config/config_pes.xmlcime_config/allactive/config_compsets.xml8a4b3954f0d9d6f99f6c8b859de41f2c960d70ab1600802756000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange CAM to EAM in allactive compsets Change CAM to EAM in allactive compsets 2020-09-22 14:25:56 -05008a4b3954f0d9d6f99f6c8b859de41f2c960d70abChange CAM to EAM in allactive compsetseditcime_config/allactive/config_compsets.xmlcime_config/allactive/config_pesall.xmlcime_config/config_grids.xmlcime_config/config_archive.xml22b40416172a664f838ca903e965ab5a2ae957751600804640000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govModify more cime_config files for eam Modify archive, grids and pesall to use EAM,eam instead of CAM,cam 2020-09-22 14:57:20 -050022b40416172a664f838ca903e965ab5a2ae95775Modify more cime_config files for eameditcime_config/config_grids.xmleditcime_config/config_archive.xmleditcime_config/allactive/config_pesall.xmlcomponents/elm/cime_config/config_component.xmlcomponents/mosart/cime_config/config_component.xmlcomponents/cice/cime_config/config_component.xmlcomponents/mpas-ocean/cime_config/config_component.xml59709068eaf34dedcaf3ab645d9c037fab354a841600805322000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdjust other component config files for EAM Edit config_component.xml in cice, elm, mosart and mpas-ocean to switch from CAM to EAM 2020-09-22 15:08:42 -050059709068eaf34dedcaf3ab645d9c037fab354a84Adjust other component config files for EAMeditcomponents/mosart/cime_config/config_component.xmleditcomponents/mpas-ocean/cime_config/config_component.xmleditcomponents/cice/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmlcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/chem_pp/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam4_port/user_nl_cambb6d2ee5656e308bb5e06ffdb17a0119f2d136db1600809349000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govModify a few more testmods Modify some shell commands that were making copies of user_nl_cam (and clm) files to instead do user_nl_eam (and elm) 2020-09-22 16:15:49 -0500bb6d2ee5656e308bb5e06ffdb17a0119f2d136dbModify a few more testmodseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam4_port/user_nl_cameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/chem_pp/shell_commandscomponents/eam/bld/perl5lib/Build/ChemPreprocess.pma8db6db2cd5026b7aa90326cb515ee790a1ad6331600828228000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename cam to eam in ChemPreprocess.pm for paths to chem_proc and chemistry 2020-09-22 19:30:28 -0700a8db6db2cd5026b7aa90326cb515ee790a1ad633Rename cam to eam in ChemPreprocess.pm for paths to chem_proc and chemistryeditcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmcime_config/machines/Depends.ibm.cmakecime_config/machines/Depends.intel.cmake31e975ca40777bf748ae4f9f32714a42f41075921600830706000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename cam to eam in machine Depends files for cmake 2020-09-22 20:11:46 -070031e975ca40777bf748ae4f9f32714a42f4107592Rename cam to eam in machine Depends files for cmakeeditcime_config/machines/Depends.ibm.cmakeeditcime_config/machines/Depends.intel.cmakecomponents/mpas-sourcebabe50dda6d6a3cade7baa117b934516c87f49db1600887886000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: vertical transport in stage 1 2020-09-23 12:04:46 -0700babe50dda6d6a3cade7baa117b934516c87f49dbupdate mpas-source: vertical transport in stage 1editcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml055ac7bee9e72664abd737c188570fb57c1cd9931600901512000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdditions to Monthly output 2020-09-23 15:51:52 -0700055ac7bee9e72664abd737c188570fb57c1cd993Additions to Monthly outputeditcomponents/mpas-ocean/cime_config/buildnmlexternals/scorpioexternals/scorpio_classic52f96cc9e4efcb630689b703aea468ff993656ca1600906014000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govFix scorpio submodules after bad merge Fix SHA1s for scorpio submodules after a bad merge to next and master from PR #3832. This PR inadvertently changed these submodules to point to older versions, so we reset the SHA1s to the correct versions here. 2020-09-23 20:06:54 -040052f96cc9e4efcb630689b703aea468ff993656caFix scorpio submodules after bad mergeeditexternals/scorpioeditexternals/scorpio_classiccimeff4db3d7c82fa8fa1bdb8834e863ac65f40b5acf1600979227000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime pointer Update pointer to cime branch for cam2eam 2020-09-24 15:27:07 -0500ff4db3d7c82fa8fa1bdb8834e863ac65f40b5acfUpdate cime pointereditcimecomponents/homme/cmake/machineFiles/anvil-bfb.cmake7358405b141856314d40ad948943dec197ac267a1600986532000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comrevert some changes 2020-09-24 17:28:52 -05007358405b141856314d40ad948943dec197ac267arevert some changeseditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/cmake/build_model.cmakecomponents/eam/src/physics/cosp2/Cosp.cmake3abcc4a31799d6734bb34936d487943c5bc865851601004721000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace cam with eam in cmake files Replace cam with eam in some cmake files. Also an instance of clm with elm 2020-09-24 20:32:01 -07003abcc4a31799d6734bb34936d487943c5bc86585Replace cam with eam in cmake fileseditcomponents/cmake/build_model.cmakeeditcomponents/eam/src/physics/cosp2/Cosp.cmakecomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90components/clm/src/biogeochem/AllocationMod.F90393a62fd93884795238182d7533732e38a95d85c1601048172000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govUpdated fates interface bc structure for CNP 2020-09-25 11:36:12 -0400393a62fd93884795238182d7533732e38a95d85cUpdated fates interface bc structure for CNPeditcomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/clm/src/biogeochem/AllocationMod.F90components/cam/src/physics/cam/micro_mg2_0.F90e274734b72dfb3d9a2006e64dc11777efbead1411601049108000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some documentation (comments/clean-up) and thresholding on dumr, dumnr, dums, and dumns. 2020-09-25 10:51:48 -0500e274734b72dfb3d9a2006e64dc11777efbead141I added some documentation (comments/clean-up) and thresholding on dumr, dumnr, dums, and dumns.editcomponents/cam/src/physics/cam/micro_mg2_0.F90components/mpas-ocean/cime_config/buildnml990ee01ea1bb84c29db3f8a8aaab1e522f5629681601053854000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd gmKappaScaling and gmBolusKappa 2020-09-25 12:10:54 -0500990ee01ea1bb84c29db3f8a8aaab1e522f562968Add gmKappaScaling and gmBolusKappaeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmlcomponents/mosart/src/cpl/rof_comp_esmf.F90components/mosart/src/riverroute/RtmVar.F90components/mosart/src/cpl/rof_cpl_indices.F90components/elm/src/main/lnd2atmType.F90components/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/src/riverroute/MOSART_stra_mod.F90components/mosart/src/wrm/WRM_type_mod.F90components/mosart/src/riverroute/MOSART_physics_mod.F90components/elm/src/cpl/clm_cpl_indices.F90components/mosart/bld/build-namelistcomponents/elm/src/cpl/lnd_import_export.F90components/mosart/src/riverroute/RtmHistFlds.F90components/mosart/src/riverroute/RtmMod.F90components/mosart/src/cpl/rof_comp_mct.F90components/mosart/src/riverroute/RunoffMod.F90components/elm/src/main/lnd2atmMod.F90ba5f2f5fa27d6371b684a4b55e515d50d2bdc3fb1601054853000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds reservoir stratification to MOSART-heat. The new module is able to better simulate the effect of reservoirs on stream temperature seasonality and amplitude. - The stratification flag (rstraflag) should be set to "true" in "user_nl_mosart" for the scheme to be active - Inflow/outflow are considered for the advection process - A new reservoir dataset (geometry, number of layers, and outlet location) is also prepared. - These reservoir parameters can be modified by users(for example, reservoir outflow location). If required and/or additional reservoir data observation is available. - User can also specify initial reservoir temperature(inittemp), vertical discretization points for reservoir geometry (ngeom), and the maximum number of layers allowed (layers) [BFB] 2020-09-25 10:27:33 -0700ba5f2f5fa27d6371b684a4b55e515d50d2bdc3fbAdds reservoir stratification to MOSART-heat.editcomponents/elm/src/main/lnd2atmType.F90editcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmleditcomponents/mosart/src/cpl/rof_cpl_indices.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmleditcomponents/mosart/src/cpl/rof_comp_esmf.F90editcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/mosart/src/cpl/rof_comp_mct.F90addcomponents/mosart/src/riverroute/MOSART_stra_mod.F90editcomponents/elm/src/cpl/clm_cpl_indices.F90editcomponents/mosart/src/riverroute/MOSART_physics_mod.F90editcomponents/mosart/bld/build-namelisteditcomponents/mosart/src/riverroute/RunoffMod.F90editcomponents/mosart/src/wrm/WRM_type_mod.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmld28ea6ca2d96018334ee9638f62a051424338db41601064504000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduSwitch to deafault E3SM V2 output 2020-09-25 14:08:24 -0600d28ea6ca2d96018334ee9638f62a051424338db4Switch to deafault E3SM V2 outputeditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/cmake/build_model.cmakecime_config/machines/Depends.nag.cmakecime_config/machines/Depends.summit.cmakecime_config/machines/Depends.gnu.cmakecime_config/machines/Depends.pgigpu.cmakecime_config/machines/Depends.compy.pgi.cmakecime_config/machines/config_compilers.xml08e19d9f4ed674a4d02227e04fb098f7ee333a0f1601065252000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate Depends files to new eam name 2020-09-25 16:20:52 -040008e19d9f4ed674a4d02227e04fb098f7ee333a0fUpdate Depends files to new eam nameeditcime_config/machines/Depends.compy.pgi.cmakeeditcime_config/machines/Depends.pgigpu.cmakeeditcime_config/machines/Depends.summit.cmakeeditcomponents/cmake/build_model.cmakeeditcime_config/machines/Depends.nag.cmakeeditcime_config/machines/config_compilers.xmleditcime_config/machines/Depends.gnu.cmakecomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnml3ae0ce4464fb172c37b854acdb9f1715501d24f91601075566000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govInitial commit to prepend casename to mpas output files 2020-09-25 18:12:46 -05003ae0ce4464fb172c37b854acdb9f1715501d24f9Initial commit to prepend casename to mpas output fileseditcomponents/mpas-albany-landice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/clm/src/biogeophys/SedYieldMod.F9007cf25e01dae8ce64c94091399837004118952541601097690000http://carson.math.uwm.edu/jenkins/user/zeli.tanzeli.tanzeli.tan@pnnl.govfix a bug in ELM-Erosion 2020-09-25 22:21:30 -070007cf25e01dae8ce64c9409139983700411895254fix a bug in ELM-Erosioneditcomponents/clm/src/biogeophys/SedYieldMod.F90components/eam/src/cpl/atm_comp_mct.F90components/eam/src/control/cam_restart.F90components/eam/src/control/cam_history.F905b3c359db87fa66fd21667aeca807ed1f3c315d51601099523000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange eam output files to use eam in name Change eam history and restart files to use "eam" instead of "cam" in their names. Also update history file global attributes to use EAM instead of CAM. 2020-09-25 22:52:03 -07005b3c359db87fa66fd21667aeca807ed1f3c315d5Change eam output files to use eam in nameeditcomponents/eam/src/control/cam_restart.F90editcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/cpl/atm_comp_mct.F90cime6abebac06f696c44efecf5c6d6803eeac4cdf1a91601099885000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime submodule Update cime submodule on the eam rename branch 2020-09-25 22:58:05 -07006abebac06f696c44efecf5c6d6803eeac4cdf1a9Update cime submoduleeditcimecomponents/mosart/src/riverroute/MOSART_stra_mod.F90d11837009dd057424ee19f5f8d7672c67f8c9fc71601136943000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUses isnan from shr_infnan_mod 2020-09-26 09:15:43 -0700d11837009dd057424ee19f5f8d7672c67f8c9fc7Uses isnan from shr_infnan_modeditcomponents/mosart/src/riverroute/MOSART_stra_mod.F90cime_config/tests.py26745afc61667feb4eb0416eded1bdfa359a1aab1601165691000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.cominctease time limit for homme suite for anvil 2020-09-26 19:14:51 -050026745afc61667feb4eb0416eded1bdfa359a1aabinctease time limit for homme suite for anvileditcime_config/tests.py.travis/run.sh6314340040c5af416ae5d7ee2f0c84b23ff347081601222800000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduImprove Travis debugging 2020-09-27 11:06:40 -05006314340040c5af416ae5d7ee2f0c84b23ff34708Improve Travis debuggingedit.travis/run.shcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnml1d6f9a7a80e1caa3a223d49ae048eeb850fa411d1601232448000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate ICG files for oEC60to30v3 so seaice has new number of snow levels 2020-09-27 13:47:28 -05001d6f9a7a80e1caa3a223d49ae048eeb850fa411dUpdate ICG files for oEC60to30v3 so seaice has new number of snow levelseditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmlcomponents/eam/chem_proc/bkend/mozart.mod.files.PPcomponents/eam/chem_proc/procfiles/cam/mo_chem.incomponents/eam/chem_proc/bkend/cam.mod.files.PPcomponents/eam/chem_proc/procfiles/mo_grid.incomponents/eam/chem_proc/bkend/wrf.mod.files.PPcomponents/eam/chem_proc/procfiles/mo_chem.in2830fd4d62fe48388d9d6576bb6257e2b1b6a6a81601270303000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin3.lcrc.anl.govRename .mod files in chem_proc to .in 2020-09-28 00:18:23 -05002830fd4d62fe48388d9d6576bb6257e2b1b6a6a8Rename .mod files in chem_proc to .ineditcomponents/eam/chem_proc/bkend/cam.mod.files.PPeditcomponents/eam/chem_proc/bkend/wrf.mod.files.PPaddcomponents/eam/chem_proc/procfiles/mo_chem.ineditcomponents/eam/chem_proc/bkend/mozart.mod.files.PPaddcomponents/eam/chem_proc/procfiles/cam/mo_chem.inaddcomponents/eam/chem_proc/procfiles/mo_grid.incomponents/mpas-seaice/cime_config/buildnml1c5b45030b7e17635fd6bfb51c93aa0e8894c70f1601271706000http://carson.math.uwm.edu/jenkins/user/ac.afrobertsac.afrobertsac.afroberts@blueslogin4.lcrc.anl.govupdate buildnml for E3SM V2 2020-09-28 00:41:46 -05001c5b45030b7e17635fd6bfb51c93aa0e8894c70fupdate buildnml for E3SM V2editcomponents/mpas-seaice/cime_config/buildnmlcomponents/eam/chem_proc/src/cam_chempp/mozpp.main.f6f54a273f284afc6d9cb95fd2366133fb283ddae1601290360000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govChange pattern matching of .mod to .in on setting chem_mods file 2020-09-28 05:52:40 -05006f54a273f284afc6d9cb95fd2366133fb283ddaeChange pattern matching of .mod to .in on setting chem_mods fileeditcomponents/eam/chem_proc/src/cam_chempp/mozpp.main.fcomponents/mpas-source195ecf14d2cd71332574b72f8660e5557f7e96a51601323000000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: CVMix and GM updates 2020-09-28 13:56:40 -0600195ecf14d2cd71332574b72f8660e5557f7e96a5Update mpas-source: CVMix and GM updateseditcomponents/mpas-sourcecomponents/cam/bld/namelist_files/namelist_definition.xmlc86fe11e5c40641c389e41c46de50d16493fe58e1601323689000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govAllow up to 10 atm tapes 2020-09-28 13:08:09 -0700c86fe11e5c40641c389e41c46de50d16493fe58eAllow up to 10 atm tapeseditcomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist69e428eca1db099d71c261f93b33dd146826dc121601325138000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate bld scripts autogenerated from Registry changes 2020-09-28 15:32:18 -050069e428eca1db099d71c261f93b33dd146826dc12Update bld scripts autogenerated from Registry changeseditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelistcomponents/mpas-seaice/cime_config/buildnmle05f005296cd5aeba46506164f3497edc93d44a01601354155000http://carson.math.uwm.edu/jenkins/user/ac.afrobertsac.afrobertsac.afroberts@blueslogin1.lcrc.anl.govupdate to include monthly albedo by surface type, and pond fraction as default 2020-09-28 23:35:55 -0500e05f005296cd5aeba46506164f3497edc93d44a0update to include monthly albedo by surface type, and pond fraction as defaulteditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-source50f5d2fafa50ef76cf8af46251c03276375c047f1601390258000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: CVMix and GM updates 2020-09-29 08:37:38 -060050f5d2fafa50ef76cf8af46251c03276375c047fUpdate mpas-source: CVMix and GM updateseditcomponents/mpas-sourcecomponents/clm/src/main/clmfates_interfaceMod.F908f32d882576893d161e0f19b605d9a810e24e2e81601394967000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govSending ALM as hlm_name to FATES instead of CLM 2020-09-29 11:56:07 -04008f32d882576893d161e0f19b605d9a810e24e2e8Sending ALM as hlm_name to FATES instead of CLMeditcomponents/clm/src/main/clmfates_interfaceMod.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml969ccb500d501b94adecfa2b839c2d4eb625cb561601403382000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govChange default for config_GM_Visbeck_alpha in coupled model 2020-09-29 13:16:22 -0500969ccb500d501b94adecfa2b839c2d4eb625cb56Change default for config_GM_Visbeck_alpha in coupled modeleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/cime_config/config_component.xml7338829c38e0ca4a0d64c53eee5bf6bd2ee901941601403948000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange name of CAM_USER_MODS Change name of CAM_USER_MODS to EAM_USER_MODS because cime uses the component name to construct that string in case.py 2020-09-29 11:25:48 -07007338829c38e0ca4a0d64c53eee5bf6bd2ee90194Change name of CAM_USER_MODSeditcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90b47d5411afe7056bd14e4dac26b9932c0afd30601601409374000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd MMF_WTKE output variable modified: components/cam/src/physics/crm/crm_history.F90 modified: components/cam/src/physics/crm/crm_output_module.F90 modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:14 -0400b47d5411afe7056bd14e4dac26b9932c0afd3060Add MMF_WTKE output variableeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90d398206337ffac71778aae3b393a6188b423d2061601409376000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comchange MMF_WTKE to MMF_TKEW modified: components/cam/src/physics/crm/crm_history.F90 modified: components/cam/src/physics/crm/crm_output_module.F90 modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:16 -0400d398206337ffac71778aae3b393a6188b423d206change MMF_WTKE to MMF_TKEWeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F9034e51e604e0730cbe061d9344f5fbde8b23bdc211601409377000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comEnable moentum feedback in SAM++ modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:17 -040034e51e604e0730cbe061d9344f5fbde8b23bdc21Enable moentum feedback in SAM++editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/setparm.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppfffd888d62f77fffa5ffbfa580af7fd16215a2be1601409379000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix MMF momentum feedback modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/setparm.cpp 2020-09-29 15:56:19 -0400fffd888d62f77fffa5ffbfa580af7fd16215a2beFix MMF momentum feedbackeditcomponents/eam/src/physics/crm/samxx/setparm.cppeditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/sam/params.F90406ae76ff993385b67ad411817fd5c84df8d6ea41601413813000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comApply dosurface change to fortran CRM modified: components/eam/src/physics/crm/sam/params.F90 2020-09-29 17:10:13 -0400406ae76ff993385b67ad411817fd5c84df8d6ea4Apply dosurface change to fortran CRMeditcomponents/eam/src/physics/crm/sam/params.F90components/eam/src/cpl/atm_comp_mct.F90components/eam/src/control/cam_history.F90components/eam/src/control/filenames.F9016640b2ca15fbbb3fbc80925f58d6608b591729b1601443587000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate eam global attributes Rearrange global attriutes and include hostname and git version. Get those and username from cime infodata buffer. Remove old host and logname retrieval 2020-09-29 22:26:27 -070016640b2ca15fbbb3fbc80925f58d6608b591729bUpdate eam global attributeseditcomponents/eam/src/cpl/atm_comp_mct.F90editcomponents/eam/src/control/filenames.F90editcomponents/eam/src/control/cam_history.F90components/elm/src/main/histFileMod.F90de55f0520034852c53e561c8c38fd04ae92c6d1e1601445071000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate elm global attributes Update elm global attributes to add contact, standardize names and order. 2020-09-29 22:51:11 -0700de55f0520034852c53e561c8c38fd04ae92c6d1eUpdate elm global attributeseditcomponents/elm/src/main/histFileMod.F90components/eam/src/cpl/atm_comp_mct.F90c73f78ffbed1dc4f92429dbec4a38c848c435b921601481154000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comDeallocate local vector that is not deallocated automatically A vector is allocated inside of a call to the routine mct_gsMap_orderedPoints and pointed to by a local pointer variable in the routine atm_domain_mct. This allocated storage is not automatically deallocated when returning from atm_domain_mct. This is corrected here with an explicit deallocate. [BFB] 2020-09-30 08:52:34 -0700c73f78ffbed1dc4f92429dbec4a38c848c435b92Deallocate local vector that is not deallocated automaticallyeditcomponents/eam/src/cpl/atm_comp_mct.F90postprocessing/big_number_finder.py124f85b129a4ad07c299eec5ce4d5d892bc288df1601483735000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding big_number_finder.py to the postprocessing directory. 2020-09-30 11:35:35 -0500124f85b129a4ad07c299eec5ce4d5d892bc288dfAdding big_number_finder.py to the postprocessing directory.addpostprocessing/big_number_finder.pycomponents/mpas-sourcee0833a56f78ef26d55eba3534d1b1b537f59ed921601487573000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Modify ocean freezing temperature to match MPAS-Seaice 2020-09-30 12:39:33 -0500e0833a56f78ef26d55eba3534d1b1b537f59ed92update mpas-source: Modify ocean freezing temperature to match MPAS-Seaiceeditcomponents/mpas-sourcecomponents/elm/src/biogeophys/SoilStateType.F90c3bb9b56aa7d9e950eb3fd2d836a121938d8a8e71601487621000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRestart from existing land files that do not contain required variables for plant hydraulics. 2020-09-30 10:40:21 -0700c3bb9b56aa7d9e950eb3fd2d836a121938d8a8e7Restart from existing land files that do not contain required variables for plant hydraulics.editcomponents/elm/src/biogeophys/SoilStateType.F90components/elm/src/biogeophys/SoilStateType.F9082c7295d3b75e42d8f6cd01054cfc3ab554ac8ec1601487621000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdd comments. 2020-09-30 10:40:21 -070082c7295d3b75e42d8f6cd01054cfc3ab554ac8ecAdd comments.editcomponents/elm/src/biogeophys/SoilStateType.F90components/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-nameliste5fd63337fa8592ec85c09abccb74c5a5381e3a51601487683000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate bld scripts autogenerated from Registry changes 2020-09-30 12:41:23 -0500e5fd63337fa8592ec85c09abccb74c5a5381e3a5Update bld scripts autogenerated from Registry changeseditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelistcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml1c87685c0aee87e6b2f10cb2a0e1e03493d673321601487852000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate config_open_ocean_freezing_temperature_coeff 2020-09-30 12:44:12 -05001c87685c0aee87e6b2f10cb2a0e1e03493d67332Update config_open_ocean_freezing_temperature_coeffeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/cam/phys_grid.F9054af3c1e6ad5e7fb3fae40827c3c8e06481c111b1601495947000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comIncrease field widths in atm_chunk_cost.txt The field width for the chunk id in the file atm_chunk_cost.txt is too small when the number of chunks is 500,000 or larger, resulting in the output of "*****". The field width for the process id in the file is also too small when the number of processes is 1,000,001 or larger. Here both of these conditions are checked for. If either is true, then the field widths for chunk id and process id are increased enough to support chunk and process ids as large as 999,999,999 . [BFB] 2020-09-30 12:59:07 -070054af3c1e6ad5e7fb3fae40827c3c8e06481c111bIncrease field widths in atm_chunk_cost.txteditcomponents/eam/src/physics/cam/phys_grid.F90cime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml78d94e8bc417b0fded7277845c2560b9f7bfe7681601499541000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govCompiler change after Tulip OS upgrade 2020-09-30 15:59:01 -050078d94e8bc417b0fded7277845c2560b9f7bfe768Compiler change after Tulip OS upgradeeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/elm/src/main/surfrdMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/main/controlMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/main/surfrdUtilsMod.F9080f1bf62251e3d1854d2b6805db03d04ed44e8f91601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds support to put crops different landunits Crops from PCT_NAT_PFT are now put on different landunits if create_crop_landunit=.true. 2020-09-30 15:27:57 -070080f1bf62251e3d1854d2b6805db03d04ed44e8f9Adds support to put crops different landunitseditcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/main/initGridCellsMod.F90components/elm/src/main/surfrdUtilsMod.F90e7d0b1e2ae47551ef4e55b9819808a46fcaf1b2c1601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes to fractions based on global run 2020-09-30 15:27:57 -0700e7d0b1e2ae47551ef4e55b9819808a46fcaf1b2cFixes to fractions based on global runeditcomponents/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/surfrdUtilsMod.F90f4d01b856a2684ae4fe892b4fe21fca806805b511601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes memory leak 2020-09-30 15:27:57 -0700f4d01b856a2684ae4fe892b4fe21fca806805b51Fixes memory leakeditcomponents/elm/src/main/surfrdUtilsMod.F90components/eam/bld/config_files/horiz_grid.xmlcime_config/config_grids.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml60d68435de33fdad4ae012922aea5b961514aeef1601525679000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govAdd theta-SL-pg2 config for EAM Antarcrica RRM theta-SL-pg2 configuration and supporting files are added for grid ne0np4_antarcticax4v1.pg2_r0125_ne0np4_antarcticax4v1.pg2 with ocean oRRS15to5. [BFB] 2020-09-30 23:14:39 -050060d68435de33fdad4ae012922aea5b961514aeefAdd theta-SL-pg2 config for EAM Antarcrica RRMeditcime_config/config_grids.xmleditcomponents/eam/bld/config_files/horiz_grid.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mosart/src/riverroute/RtmVar.F90components/mosart/src/riverroute/RtmHistFile.F905ccde9cba2224374ecf7db877f2167d9745540711601527334000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate mosart global attributes Update mosart global attributes in history files. Rearrange order and change RTM to MOSART. Remove old svn Version 2020-09-30 21:42:14 -07005ccde9cba2224374ecf7db877f2167d974554071Update mosart global attributeseditcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/riverroute/RtmHistFile.F90components/eam/src/control/cam_history.F900224e419af9e82135396cf2e5049cfaae66e9d0c1601528749000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd contact email to eam global attributes Add contact email to eam global attributes 2020-09-30 22:05:49 -07000224e419af9e82135396cf2e5049cfaae66e9d0cAdd contact email to eam global attributeseditcomponents/eam/src/control/cam_history.F90components/homme/cmake/machineFiles/sandiatoss3-bfb.cmakeb4f508303e89dcf4d5fef305a2122aed407240bb1601571214000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchanges for skybridge bfb test 2020-10-01 10:53:34 -0600b4f508303e89dcf4d5fef305a2122aed407240bbchanges for skybridge bfb testeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake.gitmodulesc11b842de7750ad8aeba522870cf93814d74a7281601591385000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comrevert gitmodules formatting 2020-10-01 17:29:45 -0500c11b842de7750ad8aeba522870cf93814d74a728revert gitmodules formattingedit.gitmodulescomponents/eam/bld/config_files/horiz_grid.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcime_config/config_grids.xml2590a1ac155c98d4f8232dad2821b864272cd9431601592839000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govUpdate ATM2LND_SMAP and other corrections 2020-10-01 17:53:59 -05002590a1ac155c98d4f8232dad2821b864272cd943Update ATM2LND_SMAP and other correctionseditcomponents/eam/bld/config_files/horiz_grid.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcime_config/config_grids.xmlcomponents/eam/src/physics/crm/samxx/test/perf_mod.F90components/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/eam/src/physics/crm/samxx/test/shr_const_mod.F90components/eam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90components/cam/src/physics/crm/samxx/test/perf_mod.F90733cba62845c2b8de4563e00460541e703cd7d181601606894000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFinish moving cam to eam Finish moving cam to eam by moving 3 files from cam/src/physics/crm/samxx that were missed. 2020-10-01 21:48:14 -0500733cba62845c2b8de4563e00460541e703cd7d18Finish moving cam to eamdeletecomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90addcomponents/eam/src/physics/crm/samxx/test/shr_const_mod.F90addcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shaddcomponents/eam/src/physics/crm/samxx/test/perf_mod.F90deletecomponents/cam/src/physics/crm/samxx/test/perf_mod.F90deletecomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcime_config/machines/Depends.ibm.cmakecime_config/machines/Depends.intel.cmakeeaa2ac8953593545092d445c34f164d411211d0f1601615275000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing new paths 2020-10-02 00:07:55 -0500eaa2ac8953593545092d445c34f164d411211d0ffixing new pathseditcime_config/machines/Depends.intel.cmakeeditcime_config/machines/Depends.ibm.cmakecomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnml7cccaea7e8b8fb1ff1874a43aaed354cf6d787df1601651348000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate ICG file datestamps for EC30to60E2r2 2020-10-02 10:09:08 -05007cccaea7e8b8fb1ff1874a43aaed354cf6d787dfUpdate ICG file datestamps for EC30to60E2r2editcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmldiagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_hollfiller.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/draw_rain.pydiagnostic_v2_0/draw_clubb_skew.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_silhs_standard.pydiagnostic_v2_0/draw_e3sm_budget.pydiagnostic_v2_0/draw_micro_budget.py056318076f5a17604ee3b03c741f131f6f80de171601659020000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the E3SM-CLUBB plots to create a new directory called climo_2 within the case/run/ directory, rather than dump everything within the outer case directory. 2020-10-02 12:17:00 -0500056318076f5a17604ee3b03c741f131f6f80de17I updated the E3SM-CLUBB plots to create a new directory callededitdiagnostic_v2_0/draw_plots_hoz_3D.pyeditdiagnostic_v2_0/draw_e3sm_budget.pyeditdiagnostic_v2_0/draw_large_scale.pyeditdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_rain.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_micro_budget.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/draw_clubb_skew.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/draw_silhs_standard.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_hollfiller.pyrun_silhs_anvil_gust.csh7cd693c92c28c3184c6d3abfcfb947553302e0d61601659626000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the run_silhs_anvil_gust.csh runscript to include the CLUBB rel_humidity output variable. 2020-10-02 12:27:06 -05007cd693c92c28c3184c6d3abfcfb947553302e0d6I updated the run_silhs_anvil_gust.csh runscript to includeeditrun_silhs_anvil_gust.cshpostprocessing/vdiag_20130807.cshpostprocessing/amwg_variab_remap_ne30.csh9a809abd09d7dbc1972cee4cfd1656c6bcb3295b1601662988000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the files necessary for running AMWG variability package to my postprocessing directory. 2020-10-02 13:23:08 -05009a809abd09d7dbc1972cee4cfd1656c6bcb3295bI have added the files necessary for running AMWG variabilityaddpostprocessing/amwg_variab_remap_ne30.cshaddpostprocessing/vdiag_20130807.cshcomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake5e083c0837ef98451065591b14a34b84dfdbba431601668514000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comadd avx=0 to anvil, skybridge optimized setup 2020-10-02 14:55:14 -05005e083c0837ef98451065591b14a34b84dfdbba43add avx=0 to anvil, skybridge optimized setupeditcomponents/homme/cmake/machineFiles/anvil.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakecime_config/tests.py204bf98115baa707cfd4484e5758c42c6de617501601672016000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate fully coupled e3sm_prod test to v2 Update fully coupled e3sm_prod test to v2 config SMS_Ld1.ne30pg2_r05_EC30to60E2r2-1900_ICG.A_WCYCL1850S_CMIP6 2020-10-02 15:53:36 -0500204bf98115baa707cfd4484e5758c42c6de61750Update fully coupled e3sm_prod test to v2editcime_config/tests.pycimecomponents/cice/cime_config/buildlib_cmakecomponents/cice/bld/configurecomponents/cice/cime_config/buildnmlcomponents/cice/cime_config/buildlib47dfbfee9acc51db25b61cd371279c629f29989f1601677984000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govcice and cime changes for cime changes to rename CCSM_cppdefs to CIME_cppdefs. We are keeping both for right now (one is a copy of the other) to give models time to adjust) 2020-10-02 18:33:04 -040047dfbfee9acc51db25b61cd371279c629f29989fcice and cime changes for cime changes to rename CCSM_cppdefs to CIME_cppdefs. We are keeping both for right now (one is a copy of the other) to give models time to adjust)editcomponents/cice/cime_config/buildnmleditcimeeditcomponents/cice/cime_config/buildlib_cmakeeditcomponents/cice/bld/configureeditcomponents/cice/cime_config/buildlibcomponents/cmake/build_model.cmake48442f391b14cf5739faa22ac1738834e42758431601678750000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govchanges to components/cmake/build_model.cmake for CIME_cppdefs file 2020-10-02 18:45:50 -040048442f391b14cf5739faa22ac1738834e4275843changes to components/cmake/build_model.cmake for CIME_cppdefs fileeditcomponents/cmake/build_model.cmakecomponents/eam/cime_config/buildlibcomponents/eam/bld/configuref80c8d1fdad321fce03f46b4f62d581595a113011601679524000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govchanges to E3SM/components/eam/ for CIME_cppdefs 2020-10-02 18:58:44 -0400f80c8d1fdad321fce03f46b4f62d581595a11301changes to E3SM/components/eam/ for CIME_cppdefseditcomponents/eam/cime_config/buildlibeditcomponents/eam/bld/configurecomponents/mosart/cime_config/buildlib_cmakecomponents/elm/bld/configurecomponents/cice/cime_config/buildlibcomponents/elm/cime_config/buildlib7b8c6459ff151bf107cfef38c35425405077ecdd1601681033000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govfixed up cice, elm, and mosart 2020-10-02 19:23:53 -04007b8c6459ff151bf107cfef38c35425405077ecddfixed up cice, elm, and mosarteditcomponents/elm/bld/configureeditcomponents/mosart/cime_config/buildlib_cmakeeditcomponents/cice/cime_config/buildlibeditcomponents/elm/cime_config/buildlibcomponents/cice/cime_config/buildlib2459dc265daa6c4263b071a450ed21a42f0673561601681523000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 2020-10-02 19:32:03 -04002459dc265daa6c4263b071a450ed21a42f067356Improved /components/cice/cime_config/buildlibeditcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib3474bec17963f9c4d1b8bcd3051bf6ee96e2b1981601681568000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 2 2020-10-02 19:32:48 -04003474bec17963f9c4d1b8bcd3051bf6ee96e2b198Improved /components/cice/cime_config/buildlib 2editcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildliba8629911da4c0058ccd1fe5ad7b68f3f640c31221601681784000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 3 2020-10-02 19:36:24 -0400a8629911da4c0058ccd1fe5ad7b68f3f640c3122Improved /components/cice/cime_config/buildlib 3editcomponents/cice/cime_config/buildlibcomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake19fa7dff992a563d4e2c2b02ad4e04e0e756b3b01601774019000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comreverting avx_ver=0 from anvil and skybridge, causing wrong flags 2020-10-03 20:13:39 -050019fa7dff992a563d4e2c2b02ad4e04e0e756b3b0reverting avx_ver=0 from anvil and skybridge, causing wrong flagseditcomponents/homme/cmake/machineFiles/anvil.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakecomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlee2c3e5a8717375616690ad3675185d15ab9ac921601825262000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govInitial scripts support for new WC14to60E2r3 ocn/ice grid 2020-10-04 10:27:42 -0500ee2c3e5a8717375616690ad3675185d15ab9ac92Initial scripts support for new WC14to60E2r3 ocn/ice grideditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcime_config/config_grids.xmlcime_config/config_grids.xml2034eacefcd986fa502a6e2caffb8c891f1ed16f1601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd WC14to60E2r3 grid description 2020-10-04 10:27:43 -05002034eacefcd986fa502a6e2caffb8c891f1ed16fAdd WC14to60E2r3 grid descriptioneditcime_config/config_grids.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml61d5569b241ba1c3c5333ae4878d288198bd32e91601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-ocean defaults for new WC14to60E2r3 grid 2020-10-04 10:27:43 -050061d5569b241ba1c3c5333ae4878d288198bd32e9Update mpas-ocean defaults for new WC14to60E2r3 grideditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmla1efefda3510d947cbfa7a9c867cf8b35b3db5a21601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate WC14to60 mapping and domain files 2020-10-04 10:27:43 -0500a1efefda3510d947cbfa7a9c867cf8b35b3db5a2Update WC14to60 mapping and domain fileseditcime_config/config_grids.xmlcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnmlcime_config/config_grids.xml2585a13365735f581dfc4dad3d39dd5aa352ae891601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd a separate grid for the 1900 spinup of this mesh 2020-10-04 10:28:30 -05002585a13365735f581dfc4dad3d39dd5aa352ae89Add a separate grid for the 1900 spinup of this mesheditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmleditcime_config/config_grids.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml40b047b5ca2ce42389060cf6561cf6f7db74c93d1601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet config_hmix_use_ref_cell_width to true for the WC14to60E2r3 grid 2020-10-04 10:28:30 -050040b047b5ca2ce42389060cf6561cf6f7db74c93dSet config_hmix_use_ref_cell_width to true for the WC14to60E2r3 grideditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnml896c3914c5961e9abf18984e38c6a304588861021601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate datestamp for WC14to60E2r3 ICG files 2020-10-04 10:28:30 -0500896c3914c5961e9abf18984e38c6a30458886102Update datestamp for WC14to60E2r3 ICG fileseditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmlcime_config/config_grids.xmla703e22a424774c0d514209cdcb0db443c8cfd381601825601000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate grid alias for WC14to60E2r3 to use EAM instead of CAM5 2020-10-04 10:33:21 -0500a703e22a424774c0d514209cdcb0db443c8cfd38Update grid alias for WC14to60E2r3 to use EAM instead of CAM5editcime_config/config_grids.xmlcime612fc80c5471a13229b2f6053f7eb221890a62a21601854408000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate docn config to add EAMe Update CIMEs docn to add EAM to the 20TR_CMIP6 component in docn. Needed for the F20TRC5-CMIP6 compset. 2020-10-04 18:33:28 -0500612fc80c5471a13229b2f6053f7eb221890a62a2Update docn config to add EAMeeditcimecomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/config_files/definition.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/configure7f2df81504a10b7e53df6eace1aec8f5ba90a1ae1601927626000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt1 - cime and build configure modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/cime_config/config_component.xml 2020-10-05 13:53:46 -06007f2df81504a10b7e53df6eace1aec8f5ba90a1aeRemove UNICON pt1 - cime and build configureeditcomponents/eam/bld/configureeditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/dynamics/sld/inidat.F90components/eam/src/dynamics/fv/inidat.F90components/eam/src/dynamics/eul/inidat.F90components/eam/src/control/runtime_opts.F90components/eam/src/dynamics/se/inidat.F90d81665adae92d507b759a51af78086e54039fee21601927829000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt2 - misc stuff outside physics modified: components/eam/src/chemistry/modal_aero/aero_model.F90 modified: components/eam/src/control/runtime_opts.F90 modified: components/eam/src/dynamics/eul/inidat.F90 modified: components/eam/src/dynamics/fv/inidat.F90 modified: components/eam/src/dynamics/se/inidat.F90 modified: components/eam/src/dynamics/sld/inidat.F90 2020-10-05 13:57:09 -0600d81665adae92d507b759a51af78086e54039fee2Remove UNICON pt2 - misc stuff outside physicseditcomponents/eam/src/dynamics/fv/inidat.F90editcomponents/eam/src/dynamics/se/inidat.F90editcomponents/eam/src/dynamics/eul/inidat.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/dynamics/sld/inidat.F90editcomponents/eam/src/control/runtime_opts.F90components/eam/src/physics/crm/vertical_diffusion.F90components/eam/src/physics/cam/phys_control.F90components/eam/src/physics/cam/restart_physics.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/vertical_diffusion.F902d2eb1b9f474de13bdd0090d46ff5d240685cdac1601927911000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt3 - general physics changes modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/cam/physpkg.F90 modified: components/eam/src/physics/cam/restart_physics.F90 modified: components/eam/src/physics/cam/vertical_diffusion.F90 modified: components/eam/src/physics/crm/physpkg.F90 modified: components/eam/src/physics/crm/vertical_diffusion.F90 2020-10-05 13:58:31 -06002d2eb1b9f474de13bdd0090d46ff5d240685cdacRemove UNICON pt3 - general physics changeseditcomponents/eam/src/physics/cam/restart_physics.F90editcomponents/eam/src/physics/cam/vertical_diffusion.F90editcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/crm/vertical_diffusion.F90editcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/micro_mg1_0.F90components/eam/src/physics/cam/cldwat2m_macro.F90components/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/convect_shallow.F90components/eam/src/physics/cam/macrop_driver.F90components/eam/src/physics/cam/convect_deep.F90cb204c0fa089417502964799c0f48d35076ab4291601928193000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt4 - convection+micro+macro physics modified: components/eam/src/physics/cam/cldwat2m_macro.F90 modified: components/eam/src/physics/cam/convect_deep.F90 modified: components/eam/src/physics/cam/convect_shallow.F90 modified: components/eam/src/physics/cam/macrop_driver.F90 modified: components/eam/src/physics/cam/micro_mg1_0.F90 modified: components/eam/src/physics/cam/micro_mg_cam.F90 2020-10-05 14:03:13 -0600cb204c0fa089417502964799c0f48d35076ab429Remove UNICON pt4 - convection+micro+macro physicseditcomponents/eam/src/physics/cam/cldwat2m_macro.F90editcomponents/eam/src/physics/cam/micro_mg1_0.F90editcomponents/eam/src/physics/cam/macrop_driver.F90editcomponents/eam/src/physics/cam/convect_deep.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90editcomponents/eam/src/physics/cam/convect_shallow.F90cime_config/config_grids.xml5d065133610f26f4b4e4e1cc76e2657f5ddd3d2a1601928567000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mapping and domain files for EC30to60E2r2 grid 2020-10-05 15:09:27 -05005d065133610f26f4b4e4e1cc76e2657f5ddd3d2aUpdate mapping and domain files for EC30to60E2r2 grideditcime_config/config_grids.xmlcomponents/eam/src/physics/cam/unicon_cam.F90components/eam/src/physics/cam/unicon_utils.F90components/eam/src/physics/cam/unicon.F90a3121a450451fd1ea278b3bcf953a781521f4d041601928897000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt5 - unicon files deleted: components/eam/src/physics/cam/unicon.F90 deleted: components/eam/src/physics/cam/unicon_cam.F90 deleted: components/eam/src/physics/cam/unicon_utils.F90 2020-10-05 14:14:57 -0600a3121a450451fd1ea278b3bcf953a781521f4d04Remove UNICON pt5 - unicon filesdeletecomponents/eam/src/physics/cam/unicon_cam.F90deletecomponents/eam/src/physics/cam/unicon_utils.F90deletecomponents/eam/src/physics/cam/unicon.F90components/homme/cmake/machineFiles/summit-p9-omp.cmakecomponents/homme/cmake/FindAVX.cmakecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX256D.hppcomponents/homme/src/share/cxx/Config.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX512D.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Util.hppcomponents/homme/src/share/cxx/utilities/VectorUtils.hppcomponents/homme/cmake/SetCompilerFlags.cmakecomponents/homme/cmake/machineFiles/waterman.cmakecomponents/homme/src/share/cxx/Hommexx_Session.cppcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/cmake/machineFiles/weaver.cmakecomponents/homme/src/share/cxx/Types.hppcomponents/homme/src/share/cxx/Hommexx_config.h.incomponents/homme/src/share/cxx/Dimensions.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector.hppcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmaked9b3c80136d7c436540a425ed94002cc33783f8d1601930836000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: using exclusively SIMD Vector for Scalar type. This modification implies: - no more AVX256 or AVX512 tags - no more AVX_VERSION cmake option (or CPP macro) - no more need for FindAVX cmake utility - AVX compiler flag determined by Kokkos_ARCH_XYZ config options 2020-10-05 14:47:16 -0600d9b3c80136d7c436540a425ed94002cc33783f8dHomme: using exclusively SIMD Vector for Scalar type.editcomponents/homme/src/share/cxx/Types.hppeditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeaddcomponents/homme/cmake/machineFiles/weaver.cmakeeditcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmakeeditcomponents/homme/src/share/cxx/utilities/VectorUtils.hppdeletecomponents/homme/cmake/machineFiles/waterman.cmakeeditcomponents/homme/src/share/cxx/Dimensions.hppeditcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector.hppdeletecomponents/homme/cmake/FindAVX.cmakeeditcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakeeditcomponents/homme/src/share/cxx/vector/KokkosKernels_Util.hppdeletecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX512D.hppeditcomponents/homme/src/share/cxx/Config.hppdeletecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX256D.hppeditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/Hommexx_config.h.ineditcomponents/homme/cmake/SetCompilerFlags.cmakeeditcomponents/homme/cmake/machineFiles/summit-p9-omp.cmakecime_config/allactive/config_pesall.xml879efc8f1249a3e00626a0b5f966728846b5c6171601934366000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd pe-layout for T62_oEC60to30v3 DTESTM on sandiatoss3 on 4 nodes 2020-10-05 16:46:06 -0500879efc8f1249a3e00626a0b5f966728846b5c617Add pe-layout for T62_oEC60to30v3 DTESTM on sandiatoss3 on 4 nodeseditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/micro_mg1_0.F90components/eam/src/physics/cam/cldwat2m_macro.F90components/eam/src/physics/cam/micro_mg_cam.F9071ff3fa446d487e1619f7ab93fb1650ab1360db21601937284000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt6 - fix micro/macro modified: components/eam/src/physics/cam/cldwat2m_macro.F90 modified: components/eam/src/physics/cam/micro_mg1_0.F90 modified: components/eam/src/physics/cam/micro_mg_cam.F90 2020-10-05 18:34:44 -040071ff3fa446d487e1619f7ab93fb1650ab1360db2Remove UNICON pt6 - fix micro/macroeditcomponents/eam/src/physics/cam/cldwat2m_macro.F90editcomponents/eam/src/physics/cam/micro_mg1_0.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/zm_conv.F90components/eam/src/physics/cam/zm_conv_intr.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/physics/cam/physpkg.F90737f66df5f56564f9b87e8193a06af797051796f1601937431000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove trigmem modified: components/eam/src/physics/cam/physpkg.F90 modified: components/eam/src/physics/cam/zm_conv.F90 modified: components/eam/src/physics/cam/zm_conv_intr.F90 modified: components/eam/src/physics/crm/physpkg.F90 2020-10-05 18:37:11 -0400737f66df5f56564f9b87e8193a06af797051796fRemove trigmemeditcomponents/eam/src/physics/cam/zm_conv.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/cam/zm_conv_intr.F90editcomponents/eam/src/physics/crm/physpkg.F90components/eam/src/control/cam_history.F90cf203e8d557120666eac0be2427cbe94c54c80bf1601957375000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd history global att to eam Add history global attribute to eam. remove institution, make contact lowercase 2020-10-05 21:09:35 -0700cf203e8d557120666eac0be2427cbe94c54c80bfAdd history global att to eameditcomponents/eam/src/control/cam_history.F90components/elm/src/main/histFileMod.F909385596d57317d5fd0a4fed13b1750770636ce7d1601957519000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate elm global atts Update elm global attributes. remove institution and make contact lower case 2020-10-05 21:11:59 -07009385596d57317d5fd0a4fed13b1750770636ce7dUpdate elm global attseditcomponents/elm/src/main/histFileMod.F90components/mosart/src/riverroute/RtmHistFile.F90b211e0b2f3d6faf0f982d67be5b9ced51e19d3701601957599000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate mosart global atts Update mosart global attributes. Remove institution and make contact lower case 2020-10-05 21:13:19 -0700b211e0b2f3d6faf0f982d67be5b9ced51e19d370Update mosart global attseditcomponents/mosart/src/riverroute/RtmHistFile.F90components/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake10e2af0c31873190b39b7a40e102ad076b1510471602019626000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comremove avx flag as it is resolved 2020-10-06 16:27:06 -050010e2af0c31873190b39b7a40e102ad076b151047remove avx flag as it is resolvededitcomponents/homme/cmake/machineFiles/anvil-bfb.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecime_config/allactive/config_pesall.xmlcime_config/config_grids.xmled57d05aff3709d0c4e89159251d0bdd1e527f3d1602027723000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govFiles for northamericax4v1pg2_r0125_WC14to60E2r3(_ICG) 2020-10-06 16:42:03 -0700ed57d05aff3709d0c4e89159251d0bdd1e527f3dFiles for northamericax4v1pg2_r0125_WC14to60E2r3(_ICG)editcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmlcime_config/allactive/config_pesall.xmlec54651e110e9f5bbca6adc47b91961ce1028fe01602027911000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govAdjusting PE layouts for compy and a%ne0np4_northamericax4v1.pg2_l%.+_oi%WC14to60E2r3. Modified existing S,M and added L. S - 25 nodes 1.4 sypd estimated 40x1 M - 74 nodes 4.4 sypd estimated 20x2 ie threaded! L - 111 nodes 5.2 sypd estimated 40x1 2020-10-06 16:45:11 -0700ec54651e110e9f5bbca6adc47b91961ce1028fe0Adjusting PE layouts for compy and a%ne0np4_northamericax4v1.pg2_l%.+_oi%WC14to60E2r3.editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml27fffaa9170c1f4cbe0b9db00af25df2a33338251602027958000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govUpdate the 'L' (Large) default PE layout for compy and RRM V2. This one uses 115 nodes and 20x2 2020-10-06 16:45:58 -070027fffaa9170c1f4cbe0b9db00af25df2a3333825Update the 'L' (Large) default PE layout for compy and RRM V2.editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xmlcime_config/config_grids.xml7b8ec2258080561b7f79ab4111808d25e9f006a61602029315000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govNA-ocn WC RRM: Updates for CAM -> EAM. 2020-10-06 17:08:35 -07007b8ec2258080561b7f79ab4111808d25e9f006a6NA-ocn WC RRM: Updates for CAM -> EAM.editcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_pio.xmlcime_config/machines/config_machines.xml7cf569461fddd35879d1de0b7e9a68f7bc1bf6e21602034680000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comMachine file changes for PNNL Sooty [BFB] - Bit-For-Bit 2020-10-06 18:38:00 -07007cf569461fddd35879d1de0b7e9a68f7bc1bf6e2Machine file changes for PNNL Sootyeditcime_config/machines/config_pio.xmleditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/zm_conv_intr.F90components/eam/bld/namelist_files/namelist_defaults_cam.xml4e807a912099df1aa099daa5cb24968b6fb3328d1602088471000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFinish removing trigmem option modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/zm_conv_intr.F90 2020-10-07 12:34:31 -04004e807a912099df1aa099daa5cb24968b6fb3328dFinish removing trigmem optioneditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/zm_conv_intr.F90editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtd30c955981aada954d73b8256248854fbd950a1a1602093534000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Removed pointless include dir in share_kokkos_ut CMakeLists.txt 2020-10-07 11:58:54 -0600d30c955981aada954d73b8256248854fbd950a1aHomme: Removed pointless include dir in share_kokkos_ut CMakeLists.txteditcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake5c2ccc4c7abd1ffc1c2c3321ac5c1e064a3aa0801602093562000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Setting kokkos arch in some mach file used for nightlies 2020-10-07 11:59:22 -06005c2ccc4c7abd1ffc1c2c3321ac5c1e064a3aa080Homme: Setting kokkos arch in some mach file used for nightlieseditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakeeditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakeeditcomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txt532fffe020a5a5565be53695c5301edb635a10d71602094507000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: enable unit tests only in BFB builds 2020-10-07 12:15:07 -0600532fffe020a5a5565be53695c5301edb635a10d7Homme: enable unit tests only in BFB buildseditcomponents/homme/CMakeLists.txteditcomponents/homme/test_execs/CMakeLists.txtcimecomponents/cice/bld/configurecomponents/cmake/build_model.cmakecomponents/cice/cime_config/buildlibcomponents/eam/bld/configurecomponents/mosart/cime_config/buildlib_cmakecomponents/cice/cime_config/buildlib_cmakecomponents/eam/cime_config/buildlibcomponents/elm/cime_config/buildlibcomponents/elm/bld/configurecomponents/cice/cime_config/buildnml6d6f6cc10dfa24eb388e9cf2f411ff2e8b2b41d41602119042000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved e3sm commits to 1)Open the new CIME_cppdefs file if the file exists 2)Open and read the old CCSM_cppdefs file if the system can not find the CIME_cppdefs file 2020-10-07 21:04:02 -04006d6f6cc10dfa24eb388e9cf2f411ff2e8b2b41d4Improved e3sm commits to 1)Open the new CIME_cppdefs file if the file exists 2)Open and read the old CCSM_cppdefs file if the system can not find the CIME_cppdefs fileeditcomponents/elm/cime_config/buildlibeditcomponents/cice/bld/configureeditcomponents/cice/cime_config/buildlib_cmakeeditcomponents/cmake/build_model.cmakeeditcomponents/cice/cime_config/buildlibeditcomponents/elm/bld/configureeditcimeeditcomponents/cice/cime_config/buildnmleditcomponents/eam/cime_config/buildlibeditcomponents/mosart/cime_config/buildlib_cmakeeditcomponents/eam/bld/configurecomponents/mosart/cime_config/buildlib_cmake4f3192757e345ea4b89d7dc5d0ea183c1b7558df1602120013000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govFixed white space. 2020-10-07 21:20:13 -04004f3192757e345ea4b89d7dc5d0ea183c1b7558dfFixed white space.editcomponents/mosart/cime_config/buildlib_cmakecomponents/mosart/cime_config/buildlib_cmake94b533b0c5bf135f32d9d54456ff6e5b1057743c1602120042000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govFixed white space.a 2020-10-07 21:20:42 -040094b533b0c5bf135f32d9d54456ff6e5b1057743cFixed white space.aeditcomponents/mosart/cime_config/buildlib_cmakecomponents/elm/bld/configurec4ead048bd1b2a09308bd8c7ab5da07fe9df05471602120424000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govfixed some formatting 2020-10-07 21:27:04 -0400c4ead048bd1b2a09308bd8c7ab5da07fe9df0547fixed some formattingeditcomponents/elm/bld/configurecomponents/homme/test_execs/CMakeLists.txtcomponents/homme/CMakeLists.txt4d0cbfad2df1d81d2788177a72fbfa6e835c96d91602122337000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing some cmake logic regarding auto-enabling of targets 2020-10-07 19:58:57 -06004d0cbfad2df1d81d2788177a72fbfa6e835c96d9Homme: fixing some cmake logic regarding auto-enabling of targetseditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/CMakeLists.txtcomponents/eam/src/control/cam_history.F90a224a7e77063be95c0e41ee6e7d9567f949e16f11602124411000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMove eam history attribute Move the new eam history attribute to be after the git_version like in elm, mosart. 2020-10-07 19:33:31 -0700a224a7e77063be95c0e41ee6e7d9567f949e16f1Move eam history attributeeditcomponents/eam/src/control/cam_history.F90components/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppb9fd7e20e6c26b8d0ea30bfaf24fcf9a3ef2039d1602138424000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing odd non-bfb issue with Intel18 in Caar functor. It seems as intel 18 was not doing the correct thing with lambda-captured variables inside ivdep loops. In particular, it was as if all vector lanes were using the same Real temp, causing thrashing of results. Switching to automatic variable inside the for loop fixes it. 2020-10-08 00:27:04 -0600b9fd7e20e6c26b8d0ea30bfaf24fcf9a3ef2039dHomme: fixing odd non-bfb issue with Intel18 in Caar functor.editcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/mpas-source6b05051e4abec4511fcd590c783c99341b0db88e1602188592000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: modify Eden Greatbatch length scale; clean up flags 2020-10-08 15:23:12 -05006b05051e4abec4511fcd590c783c99341b0db88eUpdate mpas-source: modify Eden Greatbatch length scale; clean up flagseditcomponents/mpas-sourcecomponents/eam/src/physics/cam/cam_diagnostics.F90065f558093b0ef37208651af3283930dfb391bd61602190618000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govAdd additional diagnostic outputs to track Sudden Stratospheric Warming events 2020-10-08 13:56:58 -0700065f558093b0ef37208651af3283930dfb391bd6Add additional diagnostic outputs to track Sudden Stratospheric Warming eventseditcomponents/eam/src/physics/cam/cam_diagnostics.F90components/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-nameliste7134bc62c2b26d5bc30d120e4887db1c56ab5441602193414000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd auto-generated bld files corresponding to Registry changes 2020-10-08 16:43:34 -0500e7134bc62c2b26d5bc30d120e4887db1c56ab544Add auto-generated bld files corresponding to Registry changeseditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmla4e38bc604d3fd264cf59eaf854ac968a9516e5e1602196200000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govFix cut-and-paste error that ended up with two single quotation marks 2020-10-08 17:30:00 -0500a4e38bc604d3fd264cf59eaf854ac968a9516e5eFix cut-and-paste error that ended up with two single quotation markseditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F9038cce64bfd1fc770bee432ed7e4cde554b1ed7661602223287000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comThis simulation is BFB with the refactored code 2020-10-08 23:01:27 -070038cce64bfd1fc770bee432ed7e4cde554b1ed766This simulation is BFB with the refactored codeeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90236b740da955bd55125b64fdf37c18a736840bd11602264342000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds endrun calls for blocking radiation diagnostics 2020-10-09 10:25:42 -0700236b740da955bd55125b64fdf37c18a736840bd1Adds endrun calls for blocking radiation diagnosticseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/rad_constituents.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/rrtmgp/radiation.F9040c7240aa6e13f97ce2fbed55a3f47fecd680bde1602266864000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRRTMGP test runs fine at this point 2020-10-09 11:07:44 -070040c7240aa6e13f97ce2fbed55a3f47fecd680bdeRRTMGP test runs fine at this pointeditcomponents/eam/src/physics/rrtmgp/cam_optics.F90editcomponents/eam/src/physics/rrtmgp/radiation.F90components/elm/cime_config/buildnmld1fcd1734ea675f1464ef1b3dca232f841ad889b1602268013000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes the support for user-defined grid for ELM Recent name change of the land model broke support for `-res ELM_USRDAT`. This code modification restores the support for user-defined land grids. [BFB] 2020-10-09 11:26:53 -0700d1fcd1734ea675f1464ef1b3dca232f841ad889bFixes the support for user-defined grid for ELMeditcomponents/elm/cime_config/buildnmlcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscime_config/tests.pycomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elm824b43a0094bb8a5c780aec8844f39135608a1e41602268043000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds a test for ELM_USRDAT resolution 2020-10-09 11:27:23 -0700824b43a0094bb8a5c780aec8844f39135608a1e4Adds a test for ELM_USRDAT resolutioneditcime_config/tests.pyaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elmcomponents/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90ce31b2cdf52d26ff3d2b97c7098e786c876fee931602279629000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCRM tests run fine now 2020-10-09 14:40:29 -0700ce31b2cdf52d26ff3d2b97c7098e786c876fee93CRM tests run fine noweditcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/physics/rrtmgp/cam_optics.F90editcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/crm/rrtmgp/radiation.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/mpas-seaice/bld/build-namelist-sectioncomponents/mpas-seaice/bld/build-namelistcomponents/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xmlcomponents/mpas-seaice/cime_config/config_component.xmlcomponents/mpas-seaice/bld/build-namelist-group-listcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/driver/ice_comp_mct.Fcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-sourcecomponents/mpas-seaice/cime_config/config_compsets.xml6f8e38f7e0f092ce116699c18c0a887a83f85a211602603254000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govAdded prescribed ice mode to MPAS-Seaice component 2020-10-13 10:34:14 -05006f8e38f7e0f092ce116699c18c0a887a83f85a21Added prescribed ice mode to MPAS-Seaice componenteditcomponents/mpas-seaice/cime_config/config_component.xmleditcomponents/mpas-seaice/driver/ice_comp_mct.Feditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-sourceeditcomponents/mpas-seaice/bld/build-namelisteditcomponents/mpas-seaice/bld/build-namelist-group-listeditcomponents/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-seaice/bld/build-namelist-sectioneditcomponents/mpas-seaice/cime_config/config_compsets.xmlcomponents/cmake/build_mpas_model.cmake523d1766fd95630429ef320551a99463a60f3a3a1602605555000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comAMB fix for unused kokkos in mpas 2020-10-13 11:12:35 -0500523d1766fd95630429ef320551a99463a60f3a3aAMB fix for unused kokkos in mpaseditcomponents/cmake/build_mpas_model.cmakecime_config/allactive/config_pesall.xml98f17a6d7086bf1f52b3d4c95d658ecb08d015fc1602646412000http://carson.math.uwm.edu/jenkins/user/ambradambradambrad@cs.stanford.eduNA-ocn WC RRM: XS PE layout for cori-knl just to get something going 2020-10-13 20:33:32 -070098f17a6d7086bf1f52b3d4c95d658ecb08d015fcNA-ocn WC RRM: XS PE layout for cori-knl just to get something goingeditcime_config/allactive/config_pesall.xmlcomponents/elm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlb8a4b9bc2f491f77dce70a83ca71b685550353521602702457000http://carson.math.uwm.edu/jenkins/user/divi553divi553divi553@compy-e.pnl.govUpdate mksurfdata defaults for 0.5x0.5 res and fix a small bug The default filenames for inputs to mksurfdata at 0.5x0.5 res were not correct, so they have been updated. Also, a small tolerance bug has been fixed. A pft tolerance in normalizencheck_landuse has been updated to match its neighbor and to match the pft tolerance in the mkpft function, which is called prior to the call to normalizencheck_landuse. modified: ../../../bld/namelist_files/namelist_defaults_clm4_5.xml modified: src/mksurfdat.F90 2020-10-14 12:07:37 -0700b8a4b9bc2f491f77dce70a83ca71b68555035352Update mksurfdata defaults for 0.5x0.5 res and fix a small bugeditcomponents/elm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90editcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-sourcec0a1f2363d74040e3f54da8b8fbbd2bef82b41f01602706444000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Unreverted revert of MPAS-Seaice 2020-10-14 15:14:04 -0500c0a1f2363d74040e3f54da8b8fbbd2bef82b41f0Update mpas-source: Unreverted revert of MPAS-Seaiceeditcomponents/mpas-sourcecime102f321b927b2af05607c44f7048e143833b842f1602707773000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govAdv cime sha 2020-10-14 16:36:13 -0400102f321b927b2af05607c44f7048e143833b842fAdv cime shaeditcimecomponents/mpas-seaice/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_compsets.xmlc309c3c827aca6f2fcb408a891156d4bcedd1f641602712006000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govMove new F-compset definition to EAM 2020-10-14 16:46:46 -0500c309c3c827aca6f2fcb408a891156d4bcedd1f64Move new F-compset definition to EAMeditcomponents/mpas-seaice/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-seaice/bld/build-namelist-sectiona563790948a7fea91c795a2dfd91582f59a4678e1602712090000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govMake build-namelist-section consistent with build-namelist 2020-10-14 16:48:10 -0500a563790948a7fea91c795a2dfd91582f59a4678eMake build-namelist-section consistent with build-namelisteditcomponents/mpas-seaice/bld/build-namelist-sectioncomponents/eam/cime_config/config_compsets.xml7147e5e4837685d85da656e9a6bd79709bcc2ec61602716916000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd FC5AV1C-L-MPASSI compset 2020-10-14 18:08:36 -05007147e5e4837685d85da656e9a6bd79709bcc2ec6Add FC5AV1C-L-MPASSI compseteditcomponents/eam/cime_config/config_compsets.xmlcomponents/homme/src/share/compose_mod.F90e0e8e0d59df220f7b6f2029cb53f6c630b8ec00a1602788048000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, COMPOSE: Fix debug-build error. Passing an unused but unallocated array to C++ can trigger a failure in a debug build. Work around this by allocating a small array. 2020-10-15 11:54:08 -0700e0e8e0d59df220f7b6f2029cb53f6c630b8ec00aHomme, COMPOSE: Fix debug-build error.editcomponents/homme/src/share/compose_mod.F90components/homme/src/theta-l/share/imex_mod.F90445538bc007a5955a29a469f6bec83d024c355701602788346000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Use 'any' instead of 'maxval'. Noel's performance analysis showed that some maxval uses were expensive. These can be replaced by 'any'. One case can be moved outside of a loop, reducing the call count. 2020-10-15 11:59:06 -0700445538bc007a5955a29a469f6bec83d024c35570Homme: Use 'any' instead of 'maxval'.editcomponents/homme/src/theta-l/share/imex_mod.F90cime_config/allactive/config_pesall.xmlb69d106f049b32a1f33494f84019bd288a2cd4f91602803339000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdd layouts for RRM v2 config on compy. S,M,L that are all 40x1 (no threading) as well as ST,MT,LT that are all 20x2 and seem to be a little quicker. 2020-10-15 16:08:59 -0700b69d106f049b32a1f33494f84019bd288a2cd4f9Add layouts for RRM v2 config on compy.editcime_config/allactive/config_pesall.xmlexternals/kokkos80d017704954d1ddb90e21dfceab4081db52a0991602812536000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govBring in hot fix to kokkos submodule, relative to CRAYPE linking 2020-10-15 19:42:16 -060080d017704954d1ddb90e21dfceab4081db52a099Bring in hot fix to kokkos submodule, relative to CRAYPE linkingeditexternals/kokkoscomponents/elm/cime_config/buildnml615ba48a48cd30029b0aa6e95ed8483aa386e56f1602824084000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames local variable with clm to elm 2020-10-15 21:54:44 -0700615ba48a48cd30029b0aa6e95ed8483aa386e56fRenames local variable with clm to elmeditcomponents/elm/cime_config/buildnmlcomponents/mpas-source4ce8973f3b40b505bf6f151ebf3cfb2f9afc86ad1602865575000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed prescribed ice bug in seaice with category thickness limits 2020-10-16 11:26:15 -05004ce8973f3b40b505bf6f151ebf3cfb2f9afc86adUpdate mpas-source: fixed prescribed ice bug in seaice with category thickness limitseditcomponents/mpas-sourceexternals/kokkos8961aba5363acb92d220dc5d66742c247256643e1602879503000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govUpdate again kokkos version, following bug fix 2020-10-16 13:18:23 -07008961aba5363acb92d220dc5d66742c247256643eUpdate again kokkos version, following bug fixeditexternals/kokkoscomponents/cice/cime_config/buildlib686736f75cdaa4b93a6842e92547b9fd0547313e1602896227000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govI changed cice/cime_config/buildlib/ to store correct cppdef filename root in a variable which increases code efficiency and reduces excess duplication of code. I also replaced CCSM_cppdefs.new with CIME_cppdefs.new everywhere. 2020-10-16 20:57:07 -0400686736f75cdaa4b93a6842e92547b9fd0547313eI changed cice/cime_config/buildlib/ to storeeditcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib568965c7327440021b65407663f4e8829f9f9c001602896588000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govCleaned up unnecessary if statement block. 2020-10-16 21:03:08 -0400568965c7327440021b65407663f4e8829f9f9c00Cleaned up unnecessary if statement block.editcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib48a94799f2965eb3a8e9682c698a95a1ca2a6a861602896824000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govRevert "Cleaned up unnecessary if statement block." This reverts commit 568965c7327440021b65407663f4e8829f9f9c00. 2020-10-16 21:07:04 -040048a94799f2965eb3a8e9682c698a95a1ca2a6a86Revert "Cleaned up unnecessary if statement block."editcomponents/cice/cime_config/buildlibcomponents/eam/src/control/forecast.F90components/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/inidat.F90components/eam/src/dynamics/se/se_single_column_mod.F90316916b9b9b3a8c3d1466825c47ed85f33aaf80f1603132258000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govmake SCM compatible with thetal dycore 2020-10-19 11:30:58 -0700316916b9b9b3a8c3d1466825c47ed85f33aaf80fmake SCM compatible with thetal dycoreeditcomponents/eam/src/dynamics/se/inidat.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/eam/src/control/forecast.F90editcomponents/homme/src/share/prim_driver_base.F90components/homme/utils/e3sm_test/check_mass_conservation.py590dd51e4b5963f407f1c620e65f0df17138c50e1603145436000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govMass test: Double tol on CO2_FF global mass based on compy_pgi change. 2020-10-19 15:10:36 -0700590dd51e4b5963f407f1c620e65f0df17138c50eMass test: Double tol on CO2_FF global mass based on compy_pgi change.editcomponents/homme/utils/e3sm_test/check_mass_conservation.pycomponents/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/se_single_column_mod.F90d44ba74bf0d0462bd411a7c13d0510557ce9a8971603146988000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govbug fixes for working code 2020-10-19 15:36:28 -0700d44ba74bf0d0462bd411a7c13d0510557ce9a897bug fixes for working codeeditcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/homme/src/share/prim_driver_base.F90cimeba2285e88612b6a77e317579f712ff9461ea0d981603147096000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govAdv cime sha to include PRs #3740 & #3741, and added that to the CIME update. 2020-10-19 18:38:16 -0400ba2285e88612b6a77e317579f712ff9461ea0d98Adv cime sha to include PRs #3740 & #3741,editcimecomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90components/eam/src/chemistry/utils/mo_util.F90b27cd1a756e52bae3643e6878929c21ade0399ea1603150917000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Use new rebin_fast in volc_radiation code and rework idxs. Noel's performance analysis pinpointed the call to rebin in read_volc_radiation_data::interpolate_lats_time_vert as a bottleneck and more generally the routines in this file. The original rebin algorithm has complexity O(nsrc*ntgt) and is run for each band separately. Add rebin_fast, which has O(max(nsrc, ntgt)) complexity and is called once for all bands. rebin_fast produces BFB output w.r.t. rebin. In addition, indexing in this file was suboptimal. Fix this. 2020-10-19 16:41:57 -0700b27cd1a756e52bae3643e6878929c21ade0399eaEAM: Use new rebin_fast in volc_radiation code and rework idxs.editcomponents/eam/src/chemistry/utils/mo_util.F90editcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90components/mpas-source21605911b1c4fdfa64ff06519875ebb15573e85e1603196406000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed bug with index in prescribed ice in seaice 2020-10-20 07:20:06 -050021605911b1c4fdfa64ff06519875ebb15573e85eUpdate mpas-source: fixed bug with index in prescribed ice in seaiceeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmlaa80330f95563da45c0931f49a8f8a7fc22bb1951603324443000http://carson.math.uwm.edu/jenkins/user/ambradambradambrad@cs.stanford.eduRRM: Add an XS Cori-KNL layout from Noel. 2020-10-21 16:54:03 -0700aa80330f95563da45c0931f49a8f8a7fc22bb195RRM: Add an XS Cori-KNL layout from Noel.editcime_config/allactive/config_pesall.xmlcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake9426943d122e8cf0543e4b9349855a96a73f40691603330559000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comturn on xx tests 2020-10-21 20:35:59 -05009426943d122e8cf0543e4b9349855a96a73f4069turn on xx testseditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecomponents/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/bld/CLMBuildNamelist.pmfcfabed2a494cad178cd703018269cfa3ce129c31603386944000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govactivating dynamic crop fraction when prognostic crop model is turned off 2020-10-22 10:15:44 -0700fcfabed2a494cad178cd703018269cfa3ce129c3activating dynamic crop fraction when prognostic crop model is turned offeditcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90b14df2a546ef999dac5f0a25aec8eb640f75cf261603395106000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Remove some old comments. 2020-10-22 12:31:46 -0700b14df2a546ef999dac5f0a25aec8eb640f75cf26EAM: Remove some old comments.editcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90components/eam/cime_config/buildnmlcomponents/elm/cime_config/buildnmlf3e710794f6f5c4c7f70891ab2cbffba405a4a1e1603471772000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govDefense against use of user_nl_cam after renaming cam to eam When recycling a run script for a new case, one may not realize the case specific namelist settings may still go to user_nl_cam. This change is to force users to rename it to user_nl_eam before proceeding, if user_nl_cam is still in use, or present in the case directory. Similar is done for user_nl_clm. [BFB] 2020-10-23 09:49:32 -0700f3e710794f6f5c4c7f70891ab2cbffba405a4a1eDefense against use of user_nl_cam after renaming cam to eameditcomponents/eam/cime_config/buildnmleditcomponents/elm/cime_config/buildnmlcomponents/eam/bld/config_files/defaults_se.xmlcomponents/eam/cime_config/config_component.xmla3088f64d3ac21c013ace2db8e96bda63d17986b1603517018000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfirst attempt to switch 2020-10-24 00:23:38 -0500a3088f64d3ac21c013ace2db8e96bda63d17986bfirst attempt to switcheditcomponents/eam/bld/config_files/defaults_se.xmleditcomponents/eam/cime_config/config_component.xmlcime_config/testmods_dirs/allactive/v1cmip6/user_nl_camcime_config/testmods_dirs/allactive/v1cmip6/user_nl_eam5e2b165739a0001e51f5a6cf41fcf6cdc04cd6701603635431000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename user_nl_cam in test allactive-v1cmip6 2020-10-25 07:17:11 -07005e2b165739a0001e51f5a6cf41fcf6cdc04cd670Rename user_nl_cam in test allactive-v1cmip6deletecime_config/testmods_dirs/allactive/v1cmip6/user_nl_camaddcime_config/testmods_dirs/allactive/v1cmip6/user_nl_eamcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelistc246bf6c1230db6b7407bffe2e1fed089ebe1b521603685160000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govRemove two MOC flags 2020-10-25 21:06:00 -0700c246bf6c1230db6b7407bffe2e1fed089ebe1b52Remove two MOC flagseditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-source0e426681311454d5bc1367abe79862857fe207131603685160000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source for moc update 2020-10-25 21:06:00 -07000e426681311454d5bc1367abe79862857fe20713Update mpas-source for moc updateeditcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml282ea2ff83eac91cb1a4056cf8b0215d36d1c7821603685618000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd moc GM variables to monthly output 2020-10-25 21:13:38 -0700282ea2ff83eac91cb1a4056cf8b0215d36d1c782Add moc GM variables to monthly outputeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/biogeochem/PhenologyFluxLimitMod.F909bd1c7a578c1aa3e6a0753880504d3e3f08b2ab11603741135000http://carson.math.uwm.edu/jenkins/user/jinyuntangjinyuntangjinyuntang@lbl.govbug fix for nitrogen fixation calculation for ECA Did a quick fix to avoid negative nitrogen fixation when the soil water content computed from the Richards' equation solver is negative. Also fixed a some typos for the flux limiter solver for phenology update. These are expected to make ELM-ECA NBFB, but CTC will not be affected. 2020-10-26 12:38:55 -07009bd1c7a578c1aa3e6a0753880504d3e3f08b2ab1bug fix for nitrogen fixation calculation for ECAeditcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeochem/PhenologyFluxLimitMod.F90externals/scorpio4ddb81ad1381270494b2c3cd455105e59706381d1603817938000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govScorpio version 1.1.4 Updating to Scorpio version 1.1.4 This release includes the following changes, * Fix for GPTL performance data corruption due to unstopped timers (when Scorpio calls fail) * Support for compilers with no C++11 regex support * ADIOS conversion tool fixes for temporal variable conversion (from ADIOS to NetCDF) * Misc bug fixes 2020-10-27 11:58:58 -05004ddb81ad1381270494b2c3cd455105e59706381dScorpio version 1.1.4editexternals/scorpiocomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_mpassie56c426ebb05152a8c26aa13e6e0602afb5eee2f1603906613000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd user_nl_mpassi for elm bgcexp testmod in order to pass automated tests 2020-10-28 12:36:53 -0500e56c426ebb05152a8c26aa13e6e0602afb5eee2fAdd user_nl_mpassi for elm bgcexp testmod in order to pass automated testsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_mpassicomponents/mpas-albany-landice/cime_config/buildlibcomponents/mosart/cime_config/buildlibcomponents/mpas-ocean/cime_config/buildlibcime_config/machines/Depends.craycomponents/cice/cime_config/buildlibcime_config/machines/Depends.pgigpucomponents/elm/cime_config/buildlibcime_config/machines/Depends.intel.cmakecomponents/mpas-seaice/cime_config/buildlibcimecime_config/machines/Depends.nagcime_config/machines/Depends.ibmcime_config/machines/Depends.gnucime_config/machines/Depends.compy.pgicomponents/eam/cime_config/buildlibcime_config/machines/Depends.intelbf86549d6fb745d6f8d40d853e0eac0fc17e4f001603918376000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govRemove support for Makefile-based builds for E3SM components 2020-10-28 14:52:56 -0600bf86549d6fb745d6f8d40d853e0eac0fc17e4f00Remove support for Makefile-based builds for E3SM componentsdeletecime_config/machines/Depends.compy.pgieditcime_config/machines/Depends.intel.cmakedeletecomponents/mpas-albany-landice/cime_config/buildlibdeletecime_config/machines/Depends.pgigpudeletecomponents/elm/cime_config/buildlibdeletecomponents/mpas-ocean/cime_config/buildlibdeletecime_config/machines/Depends.nagdeletecomponents/mpas-seaice/cime_config/buildlibdeletecomponents/eam/cime_config/buildlibdeletecomponents/mosart/cime_config/buildlibdeletecime_config/machines/Depends.gnueditcimedeletecime_config/machines/Depends.ibmdeletecime_config/machines/Depends.crayeditcime_config/machines/Depends.inteldeletecomponents/cice/cime_config/buildlibcime714fe1d94c208d088bd550b443432f8563b44b671603993876000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-10-29 11:51:16 -0600714fe1d94c208d088bd550b443432f8563b44b67another cime updateeditcimecime_config/allactive/config_pesall.xml1a8423c8f65e5e5d13f57f9e2239bf5978e063891604005140000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govFor cori-knl, update PE layout for F compsets at ne4 resolution. SYPD current with this change 1 node 18.7 S 3 node 32.6 M default 13 node 52.1 M default L [bfb] 2020-10-29 13:59:00 -07001a8423c8f65e5e5d13f57f9e2239bf5978e06389For cori-knl, update PE layout for F compsets at ne4 resolution.editcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/rrtmgp/radiation.F90006f1baa47ab4193138515945e7f33d2355a9c591604010600000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govSet fill values for radiation outputs Set the flag_xyfill flag for radiation fields added to history files in addfld calls. This fixes the problem where radiation fields can contain zeros if the output frequency is higher (more often) than the radiative update frequency. This is BFB, except for the case where 'HR' is added to output fields because we were mistakenly NOT computing and outputting this field for RRTMGP. 2020-10-29 16:30:00 -0600006f1baa47ab4193138515945e7f33d2355a9c59Set fill values for radiation outputseditcomponents/eam/src/physics/rrtmgp/radiation.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/mosart/src/cpl/rof_comp_esmf.F90components/mosart/src/riverroute/RtmHistFlds.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/main/clm_initializeMod.F90components/mosart/src/riverroute/RtmMod.F90components/mosart/src/cpl/rof_comp_mct.F90components/elm/src/main/controlMod.F90components/mosart/src/riverroute/RunoffMod.F90components/mosart/src/wrm/WRM_modules.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F903544b84697552b26664b82ed92e27a549b9efca81604078946000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govupdate flag to allow one-way irrigation, remove unused output, remove redundant comments, fix area fraction inconsistency for coastal irrigation 2020-10-30 10:29:06 -07003544b84697552b26664b82ed92e27a549b9efca8update flag to allow one-way irrigation, remove unused output, remove redundant comments, fix area fraction inconsistency for coastal irrigationeditcomponents/elm/src/main/controlMod.F90editcomponents/mosart/src/riverroute/RunoffMod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/main/clm_initializeMod.F90editcomponents/mosart/src/cpl/rof_comp_mct.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/mosart/src/cpl/rof_comp_esmf.F90components/eam/src/physics/rrtmgp/radiation.F90components/eam/src/physics/crm/rrtmgp/radiation.F90360d4a64250f57cf2255708c484b0f37295427b61604079588000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govAdd missing HR output for RRTMGP 2020-10-30 11:39:48 -0600360d4a64250f57cf2255708c484b0f37295427b6Add missing HR output for RRTMGPeditcomponents/eam/src/physics/rrtmgp/radiation.F90editcomponents/eam/src/physics/crm/rrtmgp/radiation.F90cimeb1ecda98976ca713f152dc2d06f49f3813d0b6441604081947000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-10-30 12:19:07 -0600b1ecda98976ca713f152dc2d06f49f3813d0b644another cime updateeditcimecomponents/homme/src/share/cxx/Config.hppd0f61fde750823f8ada554f87c19046a498ba93c1604088133000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: setting vector size in eam builds 2020-10-30 14:02:13 -0600d0f61fde750823f8ada554f87c19046a498ba93cHommexx: setting vector size in eam buildseditcomponents/homme/src/share/cxx/Config.hppcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/homme/src/share/cxx/Hommexx_config.h.incomponents/homme/src/share/cxx/KernelVariables.hppcomponents/homme/src/share/cxx/Hommexx_Session.cpp9b5d72432aacea9192013e53d4577eb87d69f49f1604088230000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fix usage of HOMMEXX_CUDA_SHARE_BUFFER Using ifdef rather than if (and cmakedefine rather than cmakedefine01) makes it easier for eam builds. 2020-10-30 14:03:50 -06009b5d72432aacea9192013e53d4577eb87d69f49fHommexx: fix usage of HOMMEXX_CUDA_SHARE_BUFFEReditcomponents/homme/src/share/cxx/Hommexx_config.h.ineditcomponents/homme/src/share/cxx/KernelVariables.hppeditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/homme/src/share/cxx/kokkos_utils.hpp92ced758e64b210eb13435681120718496b25dcc1604088255000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fixed include path for Kokkos_Random.hpp 2020-10-30 14:04:15 -060092ced758e64b210eb13435681120718496b25dccHommexx: fixed include path for Kokkos_Random.hppeditcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/eam/bld/configure2248482ed51c5faf9d5c2e52e2205bc8cab7db681604095362000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fix eam configure script for preqx_kokkos 2020-10-30 16:02:42 -06002248482ed51c5faf9d5c2e52e2205bc8cab7db68Hommexx: fix eam configure script for preqx_kokkoseditcomponents/eam/bld/configurecomponents/homme/cmake/Kokkos.cmakecomponents/homme/src/theta-l_kokkos/cxx/DirkFunctorImpl.hppcomponents/homme/src/share/cxx/RemapFunctor.hppcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/homme/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/cxx/HyperviscosityFunctorImpl.hpp6f8c9f2e8773485fba49bb232a09059dad1673401604098943000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixed some cmake/compiler warnings 2020-10-30 17:02:23 -06006f8c9f2e8773485fba49bb232a09059dad167340Homme: fixed some cmake/compiler warningseditcomponents/homme/src/theta-l_kokkos/cxx/DirkFunctorImpl.hppeditcomponents/homme/cmake/Kokkos.cmakeeditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppeditcomponents/homme/src/theta-l_kokkos/cxx/HyperviscosityFunctorImpl.hppeditcomponents/homme/CMakeLists.txteditcomponents/homme/src/share/cxx/RemapFunctor.hppcomponents/homme/src/share/cxx/Hommexx_Session.cppcomponents/homme/src/share/cxx/Hommexx_Session.hpp933e3c2d679c1cc2907fd1ed1c38828bc0fd3c6a1604099028000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: better handling of cxx homme session We can now have a host project call initialize/finalize_hommexx_session, without the risk of compromising kokkos session integrity. The host project simply has to set Session::m_handle_kokkos to false. The host project will now have the responsibility of init/finalize kokkos before/after using any kokkos-related feature in hommexx. 2020-10-30 17:03:48 -0600933e3c2d679c1cc2907fd1ed1c38828bc0fd3c6aHomme: better handling of cxx homme sessioneditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/Hommexx_Session.hppcomponents/mosart/src/riverroute/MOSART_physics_mod.F90components/mosart/src/riverroute/RtmHistFlds.F90components/mosart/src/riverroute/RtmMod.F90343e5abcf340cb7d292d74d15e891d517c50e8071604103990000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govupdate unit in the output 2020-10-30 17:26:30 -0700343e5abcf340cb7d292d74d15e891d517c50e807update unit in the outputeditcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/mosart/src/riverroute/MOSART_physics_mod.F90editcomponents/mosart/src/riverroute/RtmMod.F90components/homme/src/share/cxx/mpi/BoundaryExchange.hppec27a03aeac52f5cf003439f83d3c81b66df82af1604123663000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: added interface to BoundaryExchange The new register_field method is to handle interface field of rank-5. A similar method already existed, but required the 2nd extent to be a compile time constant. The new method accepts a runtime one. Note: I tried to fuse them into a single method, but the compiler would not let me. Fortunately, I find a way to keep a single "_impl" version of that method. 2020-10-30 23:54:23 -0600ec27a03aeac52f5cf003439f83d3c81b66df82afHomme: added interface to BoundaryExchangeeditcomponents/homme/src/share/cxx/mpi/BoundaryExchange.hppcomponents/homme/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakeea1f63db0082fce5de39f920080b18ff3bb28c6a1604123664000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: adding HOMME_WITHOUT_PIOLIBRARY to compile definitions of executables This is not needed for homme standalone builds. But if homme is built inside another project, we cannot know in advance the place where the macros to create the execs are called from. If they are called from *outside* the homme subfolder, all the compiler macros that were added with ADD_DEFINITION(..) (like this one) are no longer visible, and need to be manually added again. This is because ADD_DEFINITION (like INCLUDE_DIRECTORIES and others0 only affects targets built in the current folder and its subdirectories. 2020-10-30 23:54:24 -0600ea1f63db0082fce5de39f920080b18ff3bb28c6aHomme: adding HOMME_WITHOUT_PIOLIBRARY to compile definitions of executableseditcomponents/homme/CMakeLists.txteditcomponents/homme/test/unit_tests/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/CMakeLists.txt0a1fae86bfbbb4f669629155e1c5f686daf0ff7d1604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: added macro to create a library for preqx_kokkos and theta-l_kokkos It's roughly the same as createTestExec, but creates a library rather than an executable (and of course doesn't create a test). 2020-10-30 23:54:25 -06000a1fae86bfbbb4f669629155e1c5f686daf0ff7dHomme: added macro to create a library for preqx_kokkos and theta-l_kokkoseditcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/CMakeLists.txta9c317722bd09a58e77c9ef7f1e61588194e518c1604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: store blas/lapack libs location in an internal cache var As explained in the inline comment, this is needed if homme is used as a subproject in another cmake project. If so, when calling macros to create execs/libs from *outside* the homme subfolders, the cmake vars storing the location of libs found during homme's configuration (via calls to find_package(...)) would not otherwise be available anymore, because of cmake's variables scope. Stuffing those vars in the cache fixes this. 2020-10-30 23:54:25 -0600a9c317722bd09a58e77c9ef7f1e61588194e518cHomme: store blas/lapack libs location in an internal cache vareditcomponents/homme/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/src/share/cxx/prim_cxx_driver_base.F90components/homme/src/theta-l_kokkos/theta_f2c_mod.F90components/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/preqx_f2c_mod.F90components/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/preqx_kokkos/prim_driver_mod.F908ca63255f79a1f527953767d577baa71168a81e01604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: created f2c module for kokkos targets, plus breaking up some functions The f2c modules allow to keep all those declarations out of prim_driver_mod, which keeps the file smaller. The breaking up of some functions into smaller ones is needed when using homme as a library. In particular, by breaking up init functions into smaller routines, we allo host project to perform additional stuff in between these smaller steps. Also, exposed some subroutines in prim_cxx_driver_base 2020-10-30 23:54:25 -06008ca63255f79a1f527953767d577baa71168a81e0Homme: created f2c module for kokkos targets, plus breaking up some functionsaddcomponents/homme/src/theta-l_kokkos/theta_f2c_mod.F90editcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/CMakeLists.txteditcomponents/homme/src/preqx_kokkos/prim_driver_mod.F90editcomponents/homme/src/share/cxx/prim_cxx_driver_base.F90addcomponents/homme/src/preqx_kokkos/preqx_f2c_mod.F90components/homme/src/theta-l_kokkos/theta_f2c_mod.F90components/homme/src/share/cxx/ElementsGeometry.hppcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/homme/src/theta-l_kokkos/cxx/Diagnostics.cppcomponents/homme/src/preqx_kokkos/cxx/cxx_f90_interface_preqx.cppcomponents/homme/src/share/cxx/ElementsGeometry.cpped762ba1f16dbfa054a00a1e0af91658349ca0831604123666000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: minor change in ElementsGeometry initialization The surface geopotential views are inited separately, since they don't depend only on the 2d mesh, but also on the case setting. 2020-10-30 23:54:26 -0600ed762ba1f16dbfa054a00a1e0af91658349ca083Homme: minor change in ElementsGeometry initializationeditcomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppeditcomponents/homme/src/theta-l_kokkos/theta_f2c_mod.F90editcomponents/homme/src/theta-l_kokkos/cxx/Diagnostics.cppeditcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/preqx_kokkos/cxx/cxx_f90_interface_preqx.cppeditcomponents/homme/src/share/cxx/ElementsGeometry.cppeditcomponents/homme/src/share/cxx/ElementsGeometry.hppcomponents/homme/src/share/prim_driver_base.F90components/homme/src/theta-l_kokkos/prim_driver_mod.F903770710ae2bd91d1e530b1bc0cae3408fc48d9791604123666000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: make some CAM ifdefs also check for SCREAM Some subroutines are for Homme standalone. So we should not just check whether CAM is defined before compiling/running them, but also check whether SCREAM is defined. 2020-10-30 23:54:26 -06003770710ae2bd91d1e530b1bc0cae3408fc48d979Homme: make some CAM ifdefs also check for SCREAMeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/eam/src/physics/crm/rrtmgp/radiation.F907902f4b2f61873d2c2b3208340c2ac29e410ae541604196819000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govApply fixes to MMF too 2020-10-31 19:13:39 -07007902f4b2f61873d2c2b3208340c2ac29e410ae54Apply fixes to MMF tooeditcomponents/eam/src/physics/crm/rrtmgp/radiation.F90components/mpas-source329fcdf72447aee4af6d0468e21b0ee413d10bc31604341057000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: Fix cmake for tool exes 2020-11-02 10:17:37 -0800329fcdf72447aee4af6d0468e21b0ee413d10bc3Update mpas-source: Fix cmake for tool exeseditcomponents/mpas-sourcecime96237fc46fc7adfe12aac43f872313eedc6fe9251604349017000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-11-02 13:30:17 -070096237fc46fc7adfe12aac43f872313eedc6fe925another cime updateeditcimecomponents/homme/src/preqx_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/prim_driver_mod.F90ba247642a52e0886442fceda07b1b799a4fdd6fa1604356791000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: init cxx functors before copying data into views 2020-11-02 15:39:51 -0700ba247642a52e0886442fceda07b1b799a4fdd6faHomme: init cxx functors before copying data into viewseditcomponents/homme/src/preqx_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/CMakeLists.txtbf0e1f45234a4b92dd181111ba05f04de90e856d1604362860000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAdd timing to compiles and links The output won't really make sense unless you build with -j1 2020-11-02 17:21:00 -0700bf0e1f45234a4b92dd181111ba05f04de90e856dAdd timing to compiles and linkseditcomponents/CMakeLists.txtcomponents/mosart/src/riverroute/RtmMod.F90components/mosart/src/cpl/rof_comp_mct.F90components/mosart/src/cpl/rof_comp_esmf.F909ad705c84bfd98d430aae419e2400dddc858149f1604426069000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govmake the code compatible with old MOSART parameter file 2020-11-03 09:54:29 -08009ad705c84bfd98d430aae419e2400dddc858149fmake the code compatible with old MOSART parameter fileeditcomponents/mosart/src/cpl/rof_comp_esmf.F90editcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/mosart/src/cpl/rof_comp_mct.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90c0d5b815fdcf5a3d9d9eaa7b10660f434cc26c1e1604428622000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comThis is a rebased after cam->eam change The original branch is copied as the following branch: singhbalwinder/atm/remove-calcsize-diags-rbase1_copy1_09302020 Diags with one ommited aerosol (e.g. bc) is still NBFB. I am using the following user_nl_cam and rad_diag_3 is still NBFB: nhtfrq = -120 history_verbose = .true. history_budget = .true. history_clubb = .true. history_eddy = .true. history_waccm = .true. mode_defs = 'mam4_mode1:accum:=', 'A:num_a1:N:num_c1:num_mr:+', 'A:so4_a1:N:so4_c1:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:pom_a1:N:pom_c1:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a1:N:soa_c1:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:bc_a1:N:bc_c1:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:dst_a1:N:dst_c1:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a1:N:ncl_c1:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a1:N:mom_c1:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode1_no_bc:accum:=', 'A:num_a1:N:num_c1:num_mr:+', 'A:so4_a1:N:so4_c1:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:pom_a1:N:pom_c1:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a1:N:soa_c1:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+','A:dst_a1:N:dst_c1:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a1:N:ncl_c1:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a1:N:mom_c1:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode2:aitken:=', 'A:num_a2:N:num_c2:num_mr:+', 'A:so4_a2:N:so4_c2:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:soa_a2:N:soa_c2:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:ncl_a2:N:ncl_c2:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a2:N:mom_c2:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode3:coarse:=', 'A:num_a3:N:num_c3:num_mr:+', 'A:dst_a3:N:dst_c3:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a3:N:ncl_c3:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:so4_a3:N:so4_c3:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:bc_a3:N:bc_c3:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:pom_a3:N:pom_c3:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a3:N:soa_c3:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:mom_a3:N:mom_c3:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode3_no_bc:coarse:=', 'A:num_a3:N:num_c3:num_mr:+', 'A:dst_a3:N:dst_c3:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a3:N:ncl_c3:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:so4_a3:N:so4_c3:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+','A:pom_a3:N:pom_c3:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a3:N:soa_c3:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:mom_a3:N:mom_c3:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode4:primary_carbon:=', 'A:num_a4:N:num_c4:num_mr:+', 'A:pom_a4:N:pom_c4:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:bc_a4:N:bc_c4:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:mom_a4:N:mom_c4:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' 'mam4_mode4_no_bc:primary_carbon:=', 'A:num_a4:N:num_c4:num_mr:+', 'A:pom_a4:N:pom_c4:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:mom_a4:N:mom_c4:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' rad_climate = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2', 'A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4', 'N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' rad_diag_1 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc','M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' rad_diag_2 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12' rad_diag_3 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc','M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' Reinstate accidently deleted MMF code and minor cleanup Fixes calcsize call args in crm/physpkg.F90 Minor additions for implementing ipair for diagnostic species it works at this point working but with wrong answers THe code works but with dgncur_a pointing to a dummy var. I have to figure out why is it. Here is the code change in calcsize.F90 (see the --> sign) !Set list_idx_local and other sanity checks list_idx_local = 0 if(present(list_idx_in)) then list_idx_local = list_idx_in if (.not. present(dgnumdry_m)) & call endrun('list_idx_in is present but dgnumdry_m pointer is missing'//errmsg(__FILE__,__LINE__)) !dgncur_a => dgnumdry_m(:,:,:) --> if(.not. associated(dgncur_a))allocate(dgncur_a( ... pcols,pver,ntot_amode)) else call pbuf_get_field(pbuf, dgnum_idx, dgncur_a) endif Seems to be working...now I am going to remove dbg statements... Removed all dbg statements, code is BFB with new calcsize Code is BF with branch singhbalwinder/eam/rrtmg_diag_bug_fix_only at commit ce31b2cdf52d26ff3d2b97c7098e786c876fee93 Replaced how we map ait<->acc species for transfer The simulation is BFB at this point [BFB] - Bit-For-Bit Simulation is BFB, performance didn't degrade I am going to start implemneting the refactor from here slowly to see where we see the performance hit and why not taking mapping refactor as it slows doen the simulation Refactor just move the code to a subroutine but it has a negative impact on model performance. the results are BFB Refactored ait<-->accum transfer rates codes Performace is not degraded and BFB Refactored some transfer codes and removed a do-loop with if conds broke a do-loop with if cond...still bfb and performance is ok replaced do-if logic with simple declarations, still BFB Performance also not impacted replaced another do-loop, still BFB refactors update tendency code in ait<->acc trnasfer Some more refactoring...still BFB and no impact on performance still BFB, some logic improvement for diagnostic calls removed another fldcw call, still BFB Still BFB, some cleanup and fixes for diagnostic calls 2020-11-03 10:37:02 -0800c0d5b815fdcf5a3d9d9eaa7b10660f434cc26c1eThis is a rebased after cam->eam changeeditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90editcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F905f467b91b287a62e8f803514bc61d9c4cced1ea71604441013000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRebased:Default case is working wih diags and it is BFB 2020-11-03 14:03:33 -08005f467b91b287a62e8f803514bc61d9c4cced1ea7Rebased:Default case is working wih diags and it is BFBeditcomponents/eam/src/physics/cam/rad_constituents.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/rrtmg/radiation.F90cimecomponents/CMakeLists.txt6bad802a1bd674718c05cd75a61b274b1ad255651604446169000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govImprove timing feature 2020-11-03 16:29:29 -07006bad802a1bd674718c05cd75a61b274b1ad25565Improve timing featureeditcomponents/CMakeLists.txteditcimecomponents/clm/src/main/histFileMod.F90components/elm/src/main/histFileMod.F90components/clm/src/biogeochem/FatesBGCDynMod.F90_oldcomponents/clm/cime_config/config_component.xmlcomponents/elm/src/biogeochem/AllocationMod.F90components/clm/src/biogeochem/AllocationMod.F90components/clm/cime_config/config_compsets.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/src/main/controlMod.F90components/clm/src/main/controlMod.F90components/elm/src/main/restFileMod.F90components/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_compsets.xmlcomponents/elm/cime_config/config_component.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/src/main/restFileMod.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xmlfee53edfd79ef57bd70153297d2135e3b7ec88171604511569000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govPreparations for resolving merge between FATES nutrient branch and hash 45c7a29 2020-11-04 12:39:29 -0500fee53edfd79ef57bd70153297d2135e3b7ec8817Preparations for resolving merge between FATES nutrient branch and hash 45c7a29deletecomponents/clm/src/main/histFileMod.F90deletecomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmldeletecomponents/clm/cime_config/config_component.xmladdcomponents/elm/cime_config/config_compsets.xmladdcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmldeletecomponents/clm/src/biogeochem/AllocationMod.F90deletecomponents/clm/src/main/restFileMod.F90deletecomponents/clm/src/main/controlMod.F90addcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmldeletecomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmladdcomponents/elm/src/biogeochem/AllocationMod.F90addcomponents/elm/src/main/restFileMod.F90addcomponents/elm/src/main/controlMod.F90addcomponents/elm/src/main/histFileMod.F90deletecomponents/clm/src/biogeochem/FatesBGCDynMod.F90_oldaddcomponents/elm/cime_config/config_component.xmldeletecomponents/clm/cime_config/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xml855d3a4c8edb134141ea968eac24b6004bda3d6a1604512396000http://carson.math.uwm.edu/jenkins/user/bogenschutz1bogenschutz1bogenschutz1@llnlg.ovchange default settings for a thetal run 2020-11-04 09:53:16 -0800855d3a4c8edb134141ea968eac24b6004bda3d6achange default settings for a thetal runeditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcomponents/elm/bld/CLMBuildNamelist.pm077cf0ca92ae933aba917c95f5de8551443104111604513345000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govIncrementally rectifying conflicts with FATES-CLP and master through evaluating diffs 2020-11-04 13:09:05 -0500077cf0ca92ae933aba917c95f5de855144310411Incrementally rectifying conflicts with FATES-CLP and master through evaluating diffseditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/CLMBuildNamelist.pma0a3fa803a31597487d5e7a640bcd875ac48e80c1604513635000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between master and FATES-CNP 2020-11-04 13:13:55 -0500a0a3fa803a31597487d5e7a640bcd875ac48e80cconflict resolutions between master and FATES-CNPeditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmla99d9e1573ff7efc431cc7a814b73d9bdf96053b1604515833000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 13:50:33 -0500a99d9e1573ff7efc431cc7a814b73d9bdf96053bconflict resolutions between fates-cnp and mastereditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_component.xmld59c7feeb29301469f77e6996c7168b6971ad5a11604516620000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 14:03:40 -0500d59c7feeb29301469f77e6996c7168b6971ad5a1conflict resolutions between fates-cnp and mastereditcomponents/elm/cime_config/config_component.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml893a50dc52c1ca7ecdafd877fb8ac7f57ea881b41604516791000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 14:06:31 -0500893a50dc52c1ca7ecdafd877fb8ac7f57ea881b4conflict resolutions between fates-cnp and mastereditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_compsets.xmlc82dd9c2a68213dedcc5f46ffa3c6e46697d461d1604520633000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:10:33 -0500c82dd9c2a68213dedcc5f46ffa3c6e46697d461dconflict resolutions between fates-cnp and mastereditcomponents/elm/cime_config/config_compsets.xmlcimecomponents/CMakeLists.txt38e1b908724014bd5742b80246abb0e6a737329d1604520970000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govRework timing so that it works with -jN 2020-11-04 13:16:10 -070038e1b908724014bd5742b80246abb0e6a737329dRework timing so that it works with -jNeditcomponents/CMakeLists.txteditcimecomponents/elm/src/main/clmfates_interfaceMod.F90components/elm/src/main/histFileMod.F909e925579644cbdfbcf88901d162391df9126590f1604521397000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:23:17 -05009e925579644cbdfbcf88901d162391df9126590fconflict resolutions between fates-cnp and mastereditcomponents/elm/src/main/clmfates_interfaceMod.F90editcomponents/elm/src/main/histFileMod.F90components/elm/src/main/restFileMod.F908b17292a8d7db06d796bad7641a752fc27ee94851604521821000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:30:21 -05008b17292a8d7db06d796bad7641a752fc27ee9485conflict resolutions between fates-cnp and mastereditcomponents/elm/src/main/restFileMod.F90components/elm/src/external_models/fates51367e8dc73399eb34cc9b693ca6c68463c49f1e1604522307000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdating fates submodule pointer to api 14 2020-11-04 15:38:27 -050051367e8dc73399eb34cc9b693ca6c68463c49f1eupdating fates submodule pointer to api 14editcomponents/elm/src/external_models/fatescomponents/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F905a91db2059cd6d493928fa24f1a9cc6ce0a6ae461604564165000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCleaned up clear_rh logic and fixed calcsize ifdef for modal_aero I tested using the following tests to ensure that model builds and produced BFB results: SMS_D_Ln5.ne4_ne4.FC5AV1C-L.compy_intel.eam-rrtmgp.C.clcsz_branch_code/ SMS_D.ne4pg2_ne4pg2.FC5AV1C-L.compy_intel.C.ait_accum_transfer__base... __ref_case_ait_acc_transfer/ SMS_D_Ln5.ne4pg2_ne4pg2.F-MMF1.compy_intel.C.clcsz_branch_code/ 2020-11-05 00:16:05 -08005a91db2059cd6d493928fa24f1a9cc6ce0a6ae46Cleaned up clear_rh logic and fixed calcsize ifdef for modal_aeroeditcomponents/eam/src/physics/rrtmgp/cam_optics.F90editcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90e1c098ed5987330bd9f568b923e81dbd7041f79f1604566048000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comBug fix for prescribed aerosols Thanks to Andrew Bradley for finding this bug (memory leak) 2020-11-05 00:47:28 -0800e1c098ed5987330bd9f568b923e81dbd7041f79fBug fix for prescribed aerosolseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F904103fd02e5795ae3d45e37b793eb804c9c3e29401604568230000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved some unused vars and use rad_cnst sigma 2020-11-05 01:23:50 -08004103fd02e5795ae3d45e37b793eb804c9c3e2940Removed some unused vars and use rad_cnst sigmaeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F904b589b1267afa06e8fafd01fa6b6f382fca0c7c81604571140000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comEverything still BFB, changes related to dgnum and voltonumb 2020-11-05 02:12:20 -08004b589b1267afa06e8fafd01fa6b6f382fca0c7c8Everything still BFB, changes related to dgnum and voltonumbeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90a85ed9eedee417604ac63237a2a22b61b04be2401604573527000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comstill BFB, some cleanup 2020-11-05 02:52:07 -0800a85ed9eedee417604ac63237a2a22b61b04be240still BFB, some cleanupeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/mpas-source60b59353daaabd1d8edb51d63d9d8578923a3e731604606256000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govCOMPASS only, New Mesh: EC15to60E2r4 2020-11-05 11:57:36 -080060b59353daaabd1d8edb51d63d9d8578923a3e73COMPASS only, New Mesh: EC15to60E2r4editcomponents/mpas-sourcecimecomponents/CMakeLists.txtdff340490f5b6962966167faa85754ebc39a77fa1604610207000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime and improve time format 2020-11-05 14:03:27 -0700dff340490f5b6962966167faa85754ebc39a77faUpdate cime and improve time formateditcomponents/CMakeLists.txteditcimecomponents/homme/src/share/prim_driver_base.F90b75c31fb2863ded32000d1dd06581e42541984ff1604623107000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govtemporary refactor of the proper way q advection should be done, refactor on way 2020-11-05 16:38:27 -0800b75c31fb2863ded32000d1dd06581e42541984fftemporary refactor of the proper way q advection should be done, refactor on wayeditcomponents/homme/src/share/prim_driver_base.F90components/cmake/build_model.cmakece03b104cc33e9c96ca003c7743040565a6e7a281604625870000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing build for mmfxx test 2020-11-05 19:24:30 -0600ce03b104cc33e9c96ca003c7743040565a6e7a28fixing build for mmfxx testeditcomponents/cmake/build_model.cmakecomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/clubb/clubb_api_module.F9014d2b06c15f43fb43b385e621a7b176268c08f971604626581000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating clubb_intr.F90, clubb_api_module, and subcol_SILHS.F90 to commit changes that add sponge damping in the top 6 levels on wp2 and wp3, use a better calculation of rho_zm, and place on upper limit on sample point values of hydrometeor mixing ratios. 2020-11-05 19:36:21 -060014d2b06c15f43fb43b385e621a7b176268c08f97I am updating clubb_intr.F90, clubb_api_module, and subcol_SILHS.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90a188b08f42566cae8983c90ae8bba1ea3f31d1e51604630214000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comReworked logic for calcsize_diag, still BFB 2020-11-05 18:36:54 -0800a188b08f42566cae8983c90ae8bba1ea3f31d1e5Reworked logic for calcsize_diag, still BFBeditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90247c4b5f62b73abd8573e45313050978d09623ae1604681873000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comminor cleanup, bfb 2020-11-06 08:57:53 -0800247c4b5f62b73abd8573e45313050978d09623aeminor cleanup, bfbeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commands83afe1925913c66b2b8876fdcc8b07f6d24d97a21604684852000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comkeep *elm-bgcexptests with preqx 2020-11-06 11:47:32 -060083afe1925913c66b2b8876fdcc8b07f6d24d97a2keep *elm-bgcexptests with preqxeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/scm/shell_commandscime_config/tests.py5c7b85280360efb5f04388bc63738446c8662f541604686564000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.commake scm test use preqx 2020-11-06 12:16:04 -06005c7b85280360efb5f04388bc63738446c8662f54make scm test use preqxaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/scm/shell_commandseditcime_config/tests.pycomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90228b8707d9864bc754c16d0dd66c17d73c9c8e771604698921000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comcleaned up update_mmr logic at some places and removed some pointers 2020-11-06 13:42:01 -0800228b8707d9864bc754c16d0dd66c17d73c9c8e77cleaned up update_mmr logic at some places and removed some pointerseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F908df35c1825f72847a5546f867a990e2b6bafa9711604702909000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCleaned up update_mmr logic 2020-11-06 14:48:29 -08008df35c1825f72847a5546f867a990e2b6bafa971Cleaned up update_mmr logiceditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cimecomponents/CMakeLists.txt7ea878121a3a21afa885bf1bd2ee0e538e488fbc1604705284000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAlways turn on our wrapper 2020-11-06 16:28:04 -07007ea878121a3a21afa885bf1bd2ee0e538e488fbcAlways turn on our wrappereditcimeeditcomponents/CMakeLists.txtcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90b25d6514877abb748ff572dbc5a53fc9f625a47d1604735093000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes build a build error 2020-11-06 23:44:53 -0800b25d6514877abb748ff572dbc5a53fc9f625a47dFixes build a build erroreditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/homme/src/share/prim_driver_base.F900489760e74aa62805a17210d8f99981797a15f4c1604957832000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govalternate way to do vertical advection 2020-11-09 13:37:12 -08000489760e74aa62805a17210d8f99981797a15f4calternate way to do vertical advectioneditcomponents/homme/src/share/prim_driver_base.F90components/elm/bld/CLMBuildNamelist.pm96d17c4271a4e6ad26379dc27cd5d3f4123593eb1604964442000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govbuild namelist fix 2020-11-09 15:27:22 -080096d17c4271a4e6ad26379dc27cd5d3f4123593ebbuild namelist fixeditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/homme/src/share/prim_driver_base.F90f7a2cc989008a40486a683893901d365bf22db1f1604969098000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govrefactor how the theta-l dycore handles the vertical advection to be more consistent 2020-11-09 16:44:58 -0800f7a2cc989008a40486a683893901d365bf22db1frefactor how the theta-l dycore handles the vertical advection to be more consistenteditcomponents/homme/src/share/prim_driver_base.F90components/eam/src/control/forecast.F90components/eam/src/control/cam_comp.F90components/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/se_single_column_mod.F9077f89d77d2b1f2167118266a61c5e86316df1d831604970122000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govupdate comments and SE improvements 2020-11-09 17:02:02 -080077f89d77d2b1f2167118266a61c5e86316df1d83update comments and SE improvementseditcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/src/control/cam_comp.F90editcomponents/eam/src/control/forecast.F90components/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmake40822551770b866bdf1d190961a6345d574a750a1605054209000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: cmake fixes for library targets 2020-11-10 17:23:29 -070040822551770b866bdf1d190961a6345d574a750aHomme: cmake fixes for library targetseditcomponents/homme/src/theta-l_kokkos/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/src/share/prim_driver_base.F906f3d3b1dff6fe39ef713760ff2730583fe8e67eb1605129745000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz764.llnl.govbug fix for update_T logical 2020-11-11 13:22:25 -08006f3d3b1dff6fe39ef713760ff2730583fe8e67ebbug fix for update_T logicaleditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F9006655b8d87586a1b8e15d0abedcb3aee92e62df51605131681000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz764.llnl.govfix some spacing issues 2020-11-11 13:54:41 -080006655b8d87586a1b8e15d0abedcb3aee92e62df5fix some spacing issueseditcomponents/homme/src/share/prim_driver_base.F90components/elm/src/main/elm_varctl.F90components/elm/src/utils/elm_varorb.F90components/elm/src/cpl/elm_cpl_indices.F90components/elm/src/main/clmfates_paraminterfaceMod.F90components/elm/src/main/elm_varsur.F90components/elm/src/main/clm_finalizeMod.F90components/elm/src/main/clm_driver.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/clm_varsur.F90components/elm/src/main/elm_finalizeMod.F90components/elm/src/main/clm_interface_bgcType.F90components/elm/src/main/clm_interface_dataType.F90components/elm/src/main/clm_varctl.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/cpl/clm_cpl_indices.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/utils/clm_time_manager.F90components/elm/src/main/elm_varpar.F90components/elm/src/utils/clm_nlUtilsMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/utils/clm_varorb.F90components/elm/src/main/elm_interface_bgcType.F90components/elm/src/main/clmfates_interfaceMod.F90components/elm/src/main/clm_initializeMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/clm_varpar.F90components/elm/src/main/clm_varcon.F90components/elm/src/utils/elm_nlUtilsMod.F90components/elm/src/main/elm_varcon.F90components/elm/src/main/clm_interface_pflotranMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/clm_instMod.F90components/elm/src/main/clm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/main/elmfates_paraminterfaceMod.F90components/elm/src/main/clm_interface_thType.F9061d85dea6aa974d521faa8c8e13c8bfddc7275d11605150976000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames files 2020-11-11 19:16:16 -080061d85dea6aa974d521faa8c8e13c8bfddc7275d1Renames filesdeletecomponents/elm/src/main/clmfates_interfaceMod.F90addcomponents/elm/src/utils/elm_nlUtilsMod.F90deletecomponents/elm/src/main/clm_driver.F90deletecomponents/elm/src/main/clm_interface_dataType.F90deletecomponents/elm/src/main/clm_interface_funcsMod.F90deletecomponents/elm/src/utils/clm_nlUtilsMod.F90deletecomponents/elm/src/main/clm_varpar.F90deletecomponents/elm/src/main/clm_varsur.F90deletecomponents/elm/src/utils/clm_time_manager.F90addcomponents/elm/src/main/elm_interface_pflotranMod.F90deletecomponents/elm/src/main/clm_varctl.F90addcomponents/elm/src/main/elm_varsur.F90addcomponents/elm/src/main/elm_interface_bgcType.F90addcomponents/elm/src/cpl/elm_cpl_indices.F90deletecomponents/elm/src/main/clm_interface_pflotranMod.F90addcomponents/elm/src/utils/elm_varorb.F90deletecomponents/elm/src/cpl/clm_cpl_indices.F90addcomponents/elm/src/main/elm_driver.F90addcomponents/elm/src/main/elm_varpar.F90addcomponents/elm/src/utils/elm_time_manager.F90addcomponents/elm/src/main/elm_interface_funcsMod.F90deletecomponents/elm/src/main/clmfates_paraminterfaceMod.F90deletecomponents/elm/src/main/clm_instMod.F90deletecomponents/elm/src/main/clm_finalizeMod.F90addcomponents/elm/src/main/elm_interface_dataType.F90addcomponents/elm/src/main/elm_instMod.F90deletecomponents/elm/src/main/clm_interface_thType.F90addcomponents/elm/src/main/elmfates_interfaceMod.F90deletecomponents/elm/src/utils/clm_varorb.F90addcomponents/elm/src/main/elm_finalizeMod.F90addcomponents/elm/src/main/elmfates_paraminterfaceMod.F90addcomponents/elm/src/main/elm_initializeMod.F90deletecomponents/elm/src/main/clm_initializeMod.F90addcomponents/elm/src/main/elm_varcon.F90addcomponents/elm/src/main/elm_varctl.F90deletecomponents/elm/src/main/clm_interface_bgcType.F90deletecomponents/elm/src/main/clm_varcon.F90addcomponents/elm/src/main/elm_interface_thType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/elm_driver.F9044ffcece0e9f52077644fb5c820fbe47432e2ab41605151127000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_drv to elm_drv 2020-11-11 19:18:47 -080044ffcece0e9f52077644fb5c820fbe47432e2ab4Renames clm_drv to elm_drveditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_driver.F901d61aed69eee88daeaa0e48e17fcc08ddda7ae2d1605151505000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames private subroutines 2020-11-11 19:25:05 -08001d61aed69eee88daeaa0e48e17fcc08ddda7ae2dRenames private subroutineseditcomponents/elm/src/main/elm_driver.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/elm_finalizeMod.F90c606e2078d0f36f61d5b6fab1c9df83241ecbc171605151589000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_finializedMod to elm_finializedMod 2020-11-11 19:26:29 -0800c606e2078d0f36f61d5b6fab1c9df83241ecbc17Renames clm_finializedMod to elm_finializedModeditcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/main/elm_finalizeMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeophys/BalanceCheckMod.F90ea69c566e0a80c058759aa8e9bf82bee3cbb5a351605151614000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_initializeMod to elm_initializeMod 2020-11-11 19:26:54 -0800ea69c566e0a80c058759aa8e9bf82bee3cbb5a35Renames clm_initializeMod to elm_initializeModeditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CMakeLists.txtcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90components/elm/src/external_models/emi/src/demo/demo.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90components/elm/src/main/elm_instMod.F9042cad2b2592c2ff227571e1cfef101dea6eb3f751605151652000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_instMod to elm_instMod 2020-11-11 19:27:32 -080042cad2b2592c2ff227571e1cfef101dea6eb3f75Renames clm_instMod to elm_instModeditcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CMakeLists.txteditcomponents/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90editcomponents/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_bgcType.F90aae6cb7f9974d346b2f161f8193afdb5f01fb5381605151680000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_bgcType to elm_interface_bgcType 2020-11-11 19:28:00 -0800aae6cb7f9974d346b2f161f8193afdb5f01fb538Renames clm_interface_bgcType to elm_interface_bgcTypeeditcomponents/elm/src/main/elm_interface_bgcType.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F9051f1553523a0be69eb714791b1d19d213c4f68421605151716000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_th_datatype to elm_interface_th_datatype 2020-11-11 19:28:36 -080051f1553523a0be69eb714791b1d19d213c4f6842Renames clm_interface_th_datatype to elm_interface_th_datatypeeditcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F90b0e4e0cda5906cd71e7c9fd2c7fb58f3253901201605151755000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_thType to elm_interface_thType 2020-11-11 19:29:15 -0800b0e4e0cda5906cd71e7c9fd2c7fb58f325390120Renames clm_interface_thType to elm_interface_thTypeeditcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F9014fe0515f278a16522be13b05d2442b8f10612511605151771000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_dataType to elm_interface_dataType 2020-11-11 19:29:31 -080014fe0515f278a16522be13b05d2442b8f1061251Renames clm_interface_dataType to elm_interface_dataTypeeditcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_instMod.F9089a6ef7278be4204d3f3fae0557393642dc47a671605151795000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_data_type to elm_interface_data_type 2020-11-11 19:29:55 -080089a6ef7278be4204d3f3fae0557393642dc47a67Renames clm_interface_data_type to elm_interface_data_typeeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/external_models/emi/src/demo/demo.F901de8980133d7174d64a01941de5f6b81d9d3b7201605151927000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_inst_biogeochem/biogeophys to elm_inst_biogeochem/biogeophys 2020-11-11 19:32:07 -08001de8980133d7174d64a01941de5f6b81d9d3b720Renames clm_inst_biogeochem/biogeophys to elm_inst_biogeochem/biogeophyseditcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/main/elm_driver.F90components/elm/src/external_models/emi/src/elm_stub/elm_subgrid_types/ColumnDataType.F9085346756955d31f70aba944bda33ff2e113dc77e1605152081000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_funcsMod to elm_interface_funcsMod 2020-11-11 19:34:41 -080085346756955d31f70aba944bda33ff2e113dc77eRenames clm_interface_funcsMod to elm_interface_funcsModeditcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_subgrid_types/ColumnDataType.F90editcomponents/elm/src/data_types/ColumnDataType.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F905ca899e101f120ddaf4c1ebe2b464bf199dd338d1605152395000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames get_clm to get_elm 2020-11-11 19:39:55 -08005ca899e101f120ddaf4c1ebe2b464bf199dd338dRenames get_clm to get_elmeditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90bb8e45a585a954b48b9596219d489e4c816c11f11605152784000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_bgc to elm_bgc 2020-11-11 19:46:24 -0800bb8e45a585a954b48b9596219d489e4c816c11f1Renames clm_bgc to elm_bgceditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90678f24e8061096079f47a7d246aaeb215270549b1605152967000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_pf_idata, clm_bgc_data, clm_idata to elm_pf_idata, elm_bgc_data, elm_idata 2020-11-11 19:49:27 -0800678f24e8061096079f47a7d246aaeb215270549bRenames clm_pf_idata, clm_bgc_data, clm_idata to elm_pf_idata, elm_bgc_data, elm_idataeditcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/PhosphorusStateType.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeochem/VOCEmissionMod.F90components/elm/src/biogeophys/TemperatureType.F90components/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/main/controlMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/pftvarcon.F90components/elm/src/biogeochem/DecompCascadeCNMod.F90components/elm/src/main/elm_driver.F90components/elm/src/biogeophys/QSatMod.F90components/elm/src/biogeophys/BareGroundFluxesMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90components/elm/src/biogeochem/AnnualUpdateMod.F90components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/WaterBudgetMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/main/elm_varcon.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/SoilTemperatureMod.F90components/elm/src/main/initVerticalMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90components/elm/src/main/PatchMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/data_types/TopounitType.F90components/elm/src/external_models/emi/src/demo/demo.F90components/elm/src/biogeochem/CropType.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeochem/CNNitrogenStateType.F90components/elm/src/biogeochem/CropMod.F90components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90components/elm/src/external_models/sbetrcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/initInterp.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/biogeochem/C14DecayMod.F90components/elm/src/biogeophys/LakeTemperatureMod.F90components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/data_types/VegetationType.F90components/elm/src/main/subgridAveMod.F90components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/biogeochem/ErosionMod.F90components/elm/src/main/decompMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/main/organicFileMod.F90components/elm/src/data_types/TopounitDataType.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeophys/LakeStateType.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/ComputeSeedMod.F90components/elm/src/main/decompInitMod.F90components/elm/src/biogeochem/CNPhenologyBeTRMod.F90components/elm/src/biogeochem/SoilLittVertTranspMod.F90components/elm/src/biogeophys/SoilStateType.F90components/elm/src/data_types/ColumnType.F90components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90components/elm/src/biogeochem/GapMortalityMod.F90components/elm/src/biogeochem/PhenologyMod.F90components/elm/src/biogeochem/NitrifDenitrifMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/src/main/ColumnMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/biogeochem/CNAllocationBetrMod.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/biogeophys/ActiveLayerMod.F90components/elm/src/biogeochem/DUSTMod.F90components/elm/src/biogeophys/SoilWaterMovementMod.F90components/elm/src/data_types/GridcellType.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/biogeophys/AerosolType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/restFileMod.F90components/elm/src/data_types/LandunitDataType.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/dyn_subgrid/dynHarvestMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/main/histFileMod.F90components/elm/src/main/lnd2atmType.F90components/elm/src/main/atm2lndMod.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/utils/restUtilMod.F90.incomponents/elm/src/data_types/LandunitType.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/biogeochem/FireMod.F90components/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/main/atm2lndType.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90components/elm/src/biogeophys/TotalWaterAndHeatMod.F90components/elm/src/main/glcDiagnosticsMod.F90components/elm/src/biogeophys/SedYieldMod.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/biogeophys/SedFluxType.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/biogeophys/WaterfluxType.F90components/elm/src/main/accumulMod.F90components/elm/src/data_types/GridcellDataType.F90components/elm/src/biogeochem/DecompCascadeBGCMod.F90components/elm/src/biogeophys/SoilMoistStressMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/elm_interface_bgcType.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/utils/accumulMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SurfaceResistanceMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/main/LandunitMod.F90components/elm/src/utils/spmdGathScatMod.F90components/elm/src/biogeophys/SoilFluxesMod.F9078dc0c61b3c5aa08f6f64b5bad8273b227e0a27b1605153173000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varcon to elm_varcon 2020-11-11 19:52:53 -080078dc0c61b3c5aa08f6f64b5bad8273b227e0a27bRenames clm_varcon to elm_varconeditcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/biogeochem/DUSTMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/biogeophys/SoilMoistStressMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/data_types/TopounitType.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnTemplateMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/data_types/LandunitType.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/dyn_subgrid/dynLandunitAreaMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeophys/SurfaceResistanceMod.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/biogeochem/ComputeSeedMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/main/LandunitMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/biogeochem/CropMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/main/organicFileMod.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/main/PatchMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/biogeophys/TotalWaterAndHeatMod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/utils/accumulMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpda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ts/elm/src/main/elm_varpar.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/main/column_varcon.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90components/elm/src/main/elm_interface_bgcType.F90components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/biogeochem/PlantMicKineticsMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/biogeophys/SoilFluxesMod.F903ca8d6cbf82a61d9218c3c04674ca1ed1b7704411605157595000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varpar to elm_varpar 2020-11-11 21:06:35 -08003ca8d6cbf82a61d9218c3c04674ca1ed1b770441Renames clm_varpar to elm_varpareditcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/biogeochem/PhenologyMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateType.F90editcomponents/elm/src/main/ColumnMod.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/main/elm_interface_bgcType.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/biogeochem/VOCEmissionMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_varpar.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/data_types/TopounitType.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/data_types/ColumnType.F90editcomponents/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90editcomponents/elm/src/biogeophys/SolarAbsorbedType.F90editcomponents/elm/src/main/column_varcon.F90editcomponents/elm/src/biogeophys/AerosolMod.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90editcomponents/elm/src/biogeochem/MaintenanceRespMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/biogeophys/LakeTemperatureMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/biogeophys/LakeStateType.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/biogeophys/TemperatureType.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/data_types/LandunitDataType.F90editcomponents/elm/src/main/soilorder_varcon.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/biogeophys/LakeFluxesMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/SoilFluxesMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/main/pftvarcon.F90editcomponents/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/biogeochem/PrecisionControlMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/biogeochem/CNDecompCascadeConType.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/main/subgridMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/biogeochem/ChemStateType.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/dyn_subgrid/dynHarvestMod.F90editcomponents/elm/src/biogeochem/RootDynamicsMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90editcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/external_models/sbetreditcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/data_types/VegetationPropertiesType.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/biogeochem/CNEcosystemDynBetrMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/biogeochem/DecompCascadeBGCMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate2Mod.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90editcomponents/elm/src/main/SoilorderConType.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/biogeochem/PlantMicKineticsMod.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90editcomponents/elm/src/biogeochem/CarbonIsoFluxMod.F90editcomponents/elm/src/biogeochem/DUSTMod.F90editcomponents/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/biogeophys/TotalWaterAndHeatMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate3Mod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/biogeophys/TemperatureType.F90components/elm/src/main/controlMod.F90components/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/elm_driver.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/WaterBudgetMod.F90components/elm/src/main/soilorder_varcon.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/main/initVerticalMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90components/elm/src/external_models/sbetrcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/biogeophys/TridiagonalMod.F90components/elm/src/utils/domainLateralMod.F90components/elm/src/biogeophys/RootBiophysMod.F90components/elm/src/main/initInterp.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90components/elm/src/biogeochem/C14DecayMod.F90components/elm/src/biogeophys/LakeTemperatureMod.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/biogeochem/CropHarvestPoolsMod.F90components/elm/src/main/subgridAveMod.F90components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/data_types/TopounitDataType.F90components/elm/src/biogeophys/LakeStateType.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90components/elm/src/biogeochem/ComputeSeedMod.F90components/elm/src/main/decompInitMod.F90components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90components/elm/src/biogeochem/CNPhenologyBeTRMod.F90components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90components/elm/src/biogeochem/SoilLittVertTranspMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90components/elm/src/biogeochem/NitrifDenitrifMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/ActiveLayerMod.F90components/elm/src/biogeophys/SoilWaterMovementMod.F90components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90components/elm/src/biogeophys/AerosolType.F90components/elm/src/utils/domainMod.F90components/elm/src/main/abortutils.F90components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/utils/fileutils.F90components/elm/src/data_types/LandunitDataType.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/main/subgridMod.F90components/elm/src/main/histFileMod.F90components/elm/src/main/lnd2atmType.F90components/elm/src/main/atm2lndMod.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/utils/restUtilMod.F90.incomponents/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/main/elmfates_paraminterfaceMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/glcDiagnosticsMod.F90components/elm/src/biogeophys/SedFluxType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90components/elm/src/biogeophys/WaterfluxType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90components/elm/src/data_types/GridcellDataType.F90components/elm/src/biogeochem/PrecisionControlMod.F90components/elm/src/main/filterMod.F90components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90components/elm/src/biogeophys/BandDiagonalMod.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/biogeophys/SoilFluxesMod.F90components/elm/src/biogeochem/PhosphorusStateType.F90components/elm/src/utils/quadraticMod.F90components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeochem/VOCEmissionMod.F90components/elm/src/main/elm_finalizeMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/src/biogeochem/CH4varcon.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90components/elm/src/main/pftvarcon.F90components/elm/src/biogeochem/DecompCascadeCNMod.F90components/elm/src/biogeophys/BareGroundFluxesMod.F90components/elm/src/dyn_subgrid/dynTimeInfoMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90components/elm/src/data_types/VegetationPropertiesType.F90components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/MEGANFactorsMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/biogeophys/SoilTemperatureMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/biogeochem/CropType.F90components/elm/src/biogeochem/PhenologyFluxLimitMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeochem/CNNitrogenStateType.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/VegStructUpdateMod.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/biogeochem/RootDynamicsMod.F90components/elm/src/biogeophys/LakeCon.F90components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90components/elm/src/data_types/VegetationType.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/decompMod.F90components/elm/src/biogeochem/ErosionMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/organicFileMod.F90components/elm/src/main/readParamsMod.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeophys/SoilStateType.F90components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90components/elm/src/biogeochem/GapMortalityMod.F90components/elm/src/biogeochem/PhenologyMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/biogeochem/CNAllocationBetrMod.F90components/elm/src/biogeochem/DUSTMod.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/main/restFileMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/dyn_subgrid/dynHarvestMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/main/atm2lndType.F90components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90components/elm/src/biogeochem/WoodProductsMod.F90components/elm/src/cpl/elm_cpl_indices.F90components/elm/src/biogeophys/SedYieldMod.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/main/accumulMod.F90components/elm/src/biogeochem/DecompCascadeBGCMod.F90components/elm/src/main/elm_varpar.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeophys/SoilMoistStressMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90components/elm/src/biogeochem/LSparseMatMod.F90components/elm/src/dyn_subgrid/dynVarMod.F90.incomponents/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/utils/accumulMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90components/elm/src/biogeophys/SurfaceResistanceMod.F90components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90components/elm/src/utils/spmdGathScatMod.F902069f52d96e5fb21caf25c6b1237e2401409a4c11605159680000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varctl to elm_varctl 2020-11-11 21:41:20 -08002069f52d96e5fb21caf25c6b1237e2401409a4c1Renames clm_varctl to elm_varctleditcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate2Mod.F90editcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/biogeochem/DecompCascadeBGCMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90editcomponents/elm/src/main/readParamsMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/biogeochem/ComputeSeedMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90editcomponents/elm/src/main/elm_varpar.F90editcomponents/elm/src/biogeophys/SedFluxType.F90editcomponents/elm/src/data_types/LandunitDataType.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate3Mod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/main/decompMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/data_types/VegetationPropertiesType.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/utils/fileutils.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/external_models/sbetreditcomponents/elm/src/biogeochem/PhenologyMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90editcomponents/elm/src/biogeophys/LakeFluxesMod.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeophys/LakeStateType.F90editcomponents/elm/src/biogeophys/SurfaceResistanceMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/biogeochem/DUSTMod.F90editcomponents/elm/src/main/soilorder_varcon.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/main/elmfates_paraminterfaceMod.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/main/pftvarcon.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/biogeochem/PhenologyFluxLimitMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/biogeochem/CH4varcon.F90editcomponents/elm/src/biogeochem/LSparseMatMod.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/dyn_subgrid/dynTimeInfoMod.F90editcomponents/elm/src/main/decompInitMod.F90editcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90editcomponents/elm/src/main/glcDiagnosticsMod.F90editcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90editcomponents/elm/src/data_types/VegetationType.F90editcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90editcomponents/elm/src/main/abortutils.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/biogeophys/TemperatureType.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/biogeochem/PrecisionControlMod.F90editcomponents/elm/src/biogeophys/SoilFluxesMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/utils/domainMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridDriverMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/biogeophys/LakeTemperatureMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/biogeophys/TridiagonalMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90editcomponents/elm/src/utils/domainLateralMod.F90editcomponents/elm/src/utils/restUtilMod.F90.ineditcomponents/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90editcomponents/elm/src/biogeochem/WoodProductsMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateType.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/main/elm_finalizeMod.F90editcomponents/elm/src/biogeophys/SolarAbsorbedType.F90editcomponents/elm/src/cpl/elm_cpl_indices.F90editcomponents/elm/src/dyn_subgrid/dynVarMod.F90.ineditcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/main/filterMod.F90editcomponents/elm/src/utils/accumulMod.F90editcomponents/elm/src/biogeophys/SoilMoistStressMod.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/biogeochem/MEGANFactorsMod.F90editcomponents/elm/src/utils/quadraticMod.F90editcomponents/elm/src/biogeochem/VegStructUpdateMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90editcomponents/elm/src/dyn_subgrid/dynLandunitAreaMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/biogeophys/BandDiagonalMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/main/accumulMod.F90editcomponents/elm/src/biogeochem/RootDynamicsMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeochem/VOCEmissionMod.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90editcomponents/elm/src/biogeophys/LakeCon.F90editcomponents/elm/src/main/GetGlobalValuesMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/dyn_subgrid/dynHarvestMod.F90editcomponents/elm/src/main/subgridMod.F90editcomponents/elm/src/biogeochem/CropHarvestPoolsMod.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/biogeochem/CNEcosystemDynBetrMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/biogeophys/RootBiophysMod.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/main/organicFileMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/main/surfrdMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/subgridMod.F90components/elm/.DS_Storecomponents/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_varsur.F90components/elm/src/utils/domainMod.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/main/initGridCellsMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F905032ede5299e9e9b318f8804505ade0177ba90731605159908000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varsur to elm_varsur 2020-11-11 21:45:08 -08005032ede5299e9e9b318f8804505ade0177ba9073Renames clm_varsur to elm_varsureditcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90addcomponents/elm/.DS_Storeeditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/utils/domainMod.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/main/elm_varsur.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/main/subgridMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/restFileMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/utils/elm_nlUtilsMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F9045d8a4aaec250e2714e60e68a74841fd139c57981605160014000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_nlUtilsMod to elm_nlUtilsMod 2020-11-11 21:46:54 -080045d8a4aaec250e2714e60e68a74841fd139c5798Renames clm_nlUtilsMod to elm_nlUtilsModeditcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/utils/elm_nlUtilsMod.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90ee41352cf827962ad7c5f46bd4c9441bd878c1031605160035000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames vic_clm_fract to vic_elm_fract 2020-11-11 21:47:15 -0800ee41352cf827962ad7c5f46bd4c9441bd878c103Renames vic_clm_fract to vic_elm_fracteditcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/cpl/elm_cpl_indices.F90208c992cf96c1f36efbced53f10d0e923c99f2931605160052000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_cpl_indices to elm_cpl_indices 2020-11-11 21:47:32 -0800208c992cf96c1f36efbced53f10d0e923c99f293Renames clm_cpl_indices to elm_cpl_indiceseditcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/elm_cpl_indices.F90components/elm/src/main/restFileMod.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/main/elmfates_interfaceMod.F90d12bb7032186d3c2aa464b9599dfd38fe758f7e21605160107000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames CLMFatesInterfaceMod to ELMFatesInterfaceMod 2020-11-11 21:48:27 -0800d12bb7032186d3c2aa464b9599dfd38fe758f7e2Renames CLMFatesInterfaceMod to ELMFatesInterfaceModeditcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/main/restFileMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/utils/elm_varorb.F90components/elm/src/cpl/lnd_comp_esmf.F90467c0b29b4f3bbd943d955853d4408fbe57ab21f1605160227000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varorb to elm_varorb 2020-11-11 21:50:27 -0800467c0b29b4f3bbd943d955853d4408fbe57ab21fRenames clm_varorb to elm_varorbeditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/utils/elm_varorb.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/pdepStreamMod.F908cf3d59fef3f7c84122d5e40b76aa42a7eb67f0d1605160242000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_domain_mct to elm_domain_mct 2020-11-11 21:50:42 -08008cf3d59fef3f7c84122d5e40b76aa42a7eb67f0dRenames clm_domain_mct to elm_domain_mcteditcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/biogeochem/FireMod.F90components/elm/src/unit_test_mocks/csm_share/CMakeLists.txtcomponents/elm/src/unit_test_mocks/dyn_subgrid/dynFileMod_mock.F90components/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90components/elm/src/unit_test_shr/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/GetGlobalValuesMod_mock.F90components/elm/src/main/test/CMakeLists.txtcomponents/elm/src/biogeophys/test/Daylength_test/test_daylength.pfcomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90components/elm/src/dyn_subgrid/test/dynVar_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90.incomponents/elm/src/unit_test_mocks/csm_share/mct_mod_mock.F90components/elm/src/dyn_subgrid/test/dynInitColumns_test/test_init_columns.pfcomponents/elm/src/unit_test_mocks/util_share/spmdMod_mock.F90components/elm/src/unit_test_shr/unittestSubgridMod.F90components/elm/src/biogeophys/test/CMakeLists.txtcomponents/elm/src/biogeophys/test/Daylength_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/csm_share/shr_sys_mod_mock.F90components/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeUninterp.pfcomponents/elm/src/dyn_subgrid/test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90components/elm/src/main/test/clm_glclnd_test/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynInitColumns_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/clm_time_manager_mock.F90components/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90.incomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights.pfcomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90.incomponents/elm/src/unit_test_mocks/main/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/test_dynTimeInfo.pfcomponents/elm/src/main/test/clm_glclnd_test/test_clm_glclnd.pfcomponents/elm/src/unit_test_mocks/main/histFileMod_mock.F90components/elm/src/unit_test_mocks/util_share/do_genf90components/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeInterp.pfcomponents/elm/src/main/test/subgridWeights_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights_one_gcell.pfcomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarShared.F90components/elm/src/main/test/subgridWeights_test/test_subgridWeights.pfcomponents/elm/src/unit_test_mocks/dyn_subgrid/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/CMakeLists.txt05472001c0c047f91370b94bf2cea8cad9a954ec1605160280000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govDeletes test directories that are not used by E3SM 2020-11-11 21:51:20 -080005472001c0c047f91370b94bf2cea8cad9a954ecDeletes test directories that are not used by E3SMdeletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights.pfdeletecomponents/elm/src/main/test/CMakeLists.txtdeletecomponents/elm/src/main/test/clm_glclnd_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/csm_share/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynInitColumns_test/test_init_columns.pfdeletecomponents/elm/src/unit_test_mocks/util_share/spmdMod_mock.F90deletecomponents/elm/src/main/test/clm_glclnd_test/test_clm_glclnd.pfdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeUninterp.pfdeletecomponents/elm/src/unit_test_mocks/util_share/do_genf90deletecomponents/elm/src/unit_test_mocks/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/dyn_subgrid/dynFileMod_mock.F90deletecomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/CMakeLists.txtdeletecomponents/elm/src/biogeophys/test/Daylength_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/clm_time_manager_mock.F90deletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights_one_gcell.pfdeletecomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90deletecomponents/elm/src/unit_test_shr/unittestSubgridMod.F90deletecomponents/elm/src/unit_test_mocks/dyn_subgrid/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90deletecomponents/elm/src/biogeophys/test/Daylength_test/test_daylength.pfdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90.indeletecomponents/elm/src/unit_test_mocks/main/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90.indeletecomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/test_dynTimeInfo.pfdeletecomponents/elm/src/unit_test_mocks/main/histFileMod_mock.F90deletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarShared.F90deletecomponents/elm/src/unit_test_shr/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynInitColumns_test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/csm_share/shr_sys_mod_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90.indeletecomponents/elm/src/unit_test_mocks/util_share/GetGlobalValuesMod_mock.F90deletecomponents/elm/src/unit_test_mocks/csm_share/mct_mod_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90deletecomponents/elm/src/main/test/subgridWeights_test/test_subgridWeights.pfdeletecomponents/elm/src/biogeophys/test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeInterp.pfdeletecomponents/elm/src/main/test/subgridWeights_test/CMakeLists.txtcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/pdepStreamMod.F904c5496c6060fd164a6157265181d3d1feaebb0e21605160312000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames dom_clm to dom_elm 2020-11-11 21:51:52 -08004c5496c6060fd164a6157265181d3d1feaebb0e2Renames dom_clm to dom_elmeditcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/biogeochem/FireMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/lnd2atmMod.F9036ed0f7ce35ac4a39c2af661a798aaf4035a70ac1605160332000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames u10_clm_patch to u10_elm_patch 2020-11-11 21:52:12 -080036ed0f7ce35ac4a39c2af661a798aaf4035a70acRenames u10_clm_patch to u10_elm_patcheditcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/main/surfrdMod.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/utils/domainMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/main/abortutils.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/subgridAveMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/main/decompMod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/utils/spmdGathScatMod.F90components/elm/src/biogeophys/SnowSnicarMod.F903be3f551dbd83cf49a3fca9dac493149cb37a46b1605160353000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clmlevel to elmlevel 2020-11-11 21:52:33 -08003be3f551dbd83cf49a3fca9dac493149cb37a46bRenames clmlevel to elmleveleditcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/main/GetGlobalValuesMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/utils/domainMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90editcomponents/elm/src/main/decompMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/main/abortutils.F90editcomponents/elm/src/main/surfrdMod.F90components/elm/src/biogeochem/DryDepVelocity.F903036327472e75c017a2a75c1acee43e2ff66d51e1605160450000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clmveg to elmveg 2020-11-11 21:54:10 -08003036327472e75c017a2a75c1acee43e2ff66d51eRenames clmveg to elmvegeditcomponents/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90e51c476d82529bb6aec8150ec6e45c7e2b9fefbf1605160470000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates output message from CLM to ELM 2020-11-11 21:54:30 -0800e51c476d82529bb6aec8150ec6e45c7e2b9fefbfUpdates output message from CLM to ELMeditcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90d7fde77ed19d001d7c76feecf2bd2f5eeb70da271605160489000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames tau_clm to tau_elm 2020-11-11 21:54:49 -0800d7fde77ed19d001d7c76feecf2bd2f5eeb70da27Renames tau_clm to tau_elmeditcomponents/elm/src/biogeophys/SnowSnicarMod.F90components/elm/bld/queryDefaultNamelist.plcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/main/controlMod.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xmlc5efbb75e7b4eb2c81b955eb0881b65bc1deb9cc1605160563000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_inparm to elm_inparm 2020-11-11 21:56:03 -0800c5efbb75e7b4eb2c81b955eb0881b65bc1deb9ccRenames clm_inparm to elm_inparmeditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/queryDefaultNamelist.pleditcomponents/elm/src/main/controlMod.F90editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml800b5e180d68b2acf02e8d973a5a8b2d0247f26f1605160607000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames multiple categories in namelist from clm to elm 2020-11-11 21:56:47 -0800800b5e180d68b2acf02e8d973a5a8b2d0247f26fRenames multiple categories in namelist from clm to elmeditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/src/main/elm_varctl.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/main/controlMod.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CNCarbonStateType.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xmlea4cd6b7262b5970c508e981a63683c3f392876d1605161856000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges multiple namelist options from CLM to ELM 2020-11-11 22:17:36 -0800ea4cd6b7262b5970c508e981a63683c3f392876dChanges multiple namelist options from CLM to ELMeditcomponents/elm/src/main/controlMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CNCarbonStateType.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/controlMod.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90f68f52cd35558050a7f041faa5229e080a2936e41605162044000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM-PFLTORAN interface to ELM-PFLOTRAN interface 2020-11-11 22:20:44 -0800f68f52cd35558050a7f041faa5229e080a2936e4Changes CLM-PFLTORAN interface to ELM-PFLOTRAN interfaceeditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/main/elm_driver.F90c1c83382a04c1fcdb6177ee7bc35bedae168d5431605162161000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChange clm_interface_data to elm_interface_data 2020-11-11 22:22:41 -0800c1c83382a04c1fcdb6177ee7bc35bedae168d543Change clm_interface_data to elm_interface_dataeditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_pflotranMod.F9069f4eb1adcf3d8e496f034c5261fa1608a9795511605162446000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in interface for PFLOTRAN 2020-11-11 22:27:26 -080069f4eb1adcf3d8e496f034c5261fa1608a979551Changes CLM to ELM in interface for PFLOTRANeditcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/main/initSubgridMod.F909fe4f1f59a224410be7dcabbcc7de789a229e7441605162539000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in initSubgridMod 2020-11-11 22:28:59 -08009fe4f1f59a224410be7dcabbcc7de789a229e744Changes CLM to ELM in initSubgridModeditcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/main/initGridCellsMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_driver.F902377cf56a360ab80c57bd23aceb6c396039cd5251605162908000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in timers 2020-11-11 22:35:08 -08002377cf56a360ab80c57bd23aceb6c396039cd525Changes CLM to ELM in timerseditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90edf2ee55e9cefbbafb208c9f67205e17fadea3db1605163038000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges subroutine name 2020-11-11 22:37:18 -0800edf2ee55e9cefbbafb208c9f67205e17fadea3dbChanges subroutine nameeditcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/pftvarcon.F9005093ecd8f0488bc1bf6d5f2b51918abb90f8b181605163156000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges name of the option to merge crops 2020-11-11 22:39:16 -080005093ecd8f0488bc1bf6d5f2b51918abb90f8b18Changes name of the option to merge cropseditcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/pftvarcon.F90components/elm/src/main/histFileMod.F9088a418881ea528315cbf0d63a76782be107ab0661605163357000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in histFileMod 2020-11-11 22:42:37 -080088a418881ea528315cbf0d63a76782be107ab066Changes CLM to ELM in histFileModeditcomponents/elm/src/main/histFileMod.F90components/elm/src/main/restFileMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/main/subgridRestMod.F90ab92ae4d71af59fa77af298bafc6d17067af75d11605163489000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChange user namelist name 2020-11-11 22:44:49 -0800ab92ae4d71af59fa77af298bafc6d17067af75d1Change user namelist nameeditcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/elm_varctl.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90a35f9e78668c93ed53fc98236dc132f848838e8a1605163783000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges BGC subroutine name from CLM to ELM 2020-11-11 22:49:43 -0800a35f9e78668c93ed53fc98236dc132f848838e8aChanges BGC subroutine name from CLM to ELMeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/main/histFileMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/controlMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/initInterp.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/ndepStreamMod.F908e5f43f64c1bca96ced0eb9b931fd2c9cc57c1821605164353000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in comments 2020-11-11 22:59:13 -08008e5f43f64c1bca96ced0eb9b931fd2c9cc57c182Changes CLM to ELM in commentseditcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90components/eam/bld/namelist_files/namelist_defaults_cam.xml7cfdd8d07711e6e9c7716b39c09eab6711d0e4c31605249962000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comsetup conusx4 res for theta 2020-11-13 00:46:02 -06007cfdd8d07711e6e9c7716b39c09eab6711d0e4c3setup conusx4 res for thetaeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mpas-source4770e56232a632a0c04af5c07e6a858357469f621605282524000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govmpas-source: improve performance of diagnostics 2020-11-13 07:48:44 -08004770e56232a632a0c04af5c07e6a858357469f62mpas-source: improve performance of diagnosticseditcomponents/mpas-sourcecomponents/eam/src/physics/crm/sam/crm_surface.F90components/eam/src/physics/crm/sam/SGS_TKE/shear_prod2D.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar3D.F90components/eam/src/physics/crm/sam/adams.F90components/eam/src/physics/crm/sam/advect2_mom_z.F90components/eam/src/physics/crm/sam/setperturb.F90components/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom2D.F90components/eam/src/physics/crm/samxx/setparm.cppcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar2D.F90components/eam/src/physics/crm/sam/gammafff.ccomponents/eam/src/physics/crm/sam/ice_fall.F90components/eam/src/physics/crm/sam/advect2_mom_xy.F90components/eam/src/physics/crm/sam/params.F90components/eam/src/physics/crm/sam/random.F90components/eam/src/physics/crm/sam/press_rhs.F90components/eam/src/physics/crm/sam/SGS_TKE/tke_full.F90components/eam/src/physics/crm/sam/abcoefs.F90components/eam/src/physics/crm/sam/kurant.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90components/eam/src/physics/crm/sam/SGS_TKE/shear_prod3D.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_proc.F90components/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom3D.F90externals/YAKLcomponents/eam/src/physics/crm/sam/damping.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/sam/pressure.F90components/eam/src/physics/crm/sam/coriolis.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/micro_params.F90components/eam/src/physics/crm/sam/sat.F90components/eam/src/physics/crm/sam/atmosphere.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar2D.F90components/eam/src/physics/crm/samxx/test/build/runtest.shcomponents/eam/src/physics/crm/sam/SGS_TKE/sgs.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/diagnose.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_init.F90components/eam/src/physics/crm/sam/forcing.F90components/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar3D.F90components/eam/src/physics/crm/samxx/samxx_const.hcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/cloud.F90940e6b9a71569ad8fb2cd8c6fb25bd06a8a5b0e81605292364000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing the constants being different in samxx than in sam. Diffs in standalone are much better now. 2020-11-13 13:32:44 -0500940e6b9a71569ad8fb2cd8c6fb25bd06a8a5b0e8Fixing the constants being different in samxx than in sam. Diffs in standalone are much better now.editcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar2D.F90editexternals/YAKLeditcomponents/eam/src/physics/crm/sam/diagnose.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/sam/gammafff.ceditcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar3D.F90editcomponents/eam/src/physics/crm/sam/abcoefs.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/micro_params.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/sgs.F90editcomponents/eam/src/physics/crm/sam/pressure.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/sam/coriolis.F90editcomponents/eam/src/physics/crm/sam/random.F90editcomponents/eam/src/physics/crm/sam/sat.F90editcomponents/eam/src/physics/crm/sam/press_rhs.F90editcomponents/eam/src/physics/crm/samxx/test/build/runtest.sheditcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom3D.F90editcomponents/eam/src/physics/crm/sam/setperturb.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/tke_full.F90editcomponents/eam/src/physics/crm/samxx/setparm.cppeditcomponents/eam/src/physics/crm/samxx/samxx_const.heditcomponents/eam/src/physics/crm/sam/adams.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_surface.F90editcomponents/eam/src/physics/crm/sam/params.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/shear_prod2D.F90editcomponents/eam/src/physics/crm/sam/atmosphere.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_proc.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90editcomponents/eam/src/physics/crm/sam/advect2_mom_xy.F90editcomponents/eam/src/physics/crm/sam/damping.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/shear_prod3D.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/cloud.F90editcomponents/eam/src/physics/crm/sam/ice_fall.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_init.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom2D.F90editcomponents/eam/src/physics/crm/sam/forcing.F90editcomponents/eam/src/physics/crm/sam/kurant.F90editcomponents/eam/src/physics/crm/sam/advect2_mom_z.F90editcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar3D.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar2D.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_module.F90cfb857094283add11320dbb7c557d6ce0e819f9d1605292372000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing fortran code bug in crm_clear_rh and mirroring in C++ code 2020-11-13 13:32:52 -0500cfb857094283add11320dbb7c557d6ce0e819f9dFixing fortran code bug in crm_clear_rh and mirroring in C++ codeeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/samxx_const.hd13db34a59007418c50cef98560a35c32e59fccd1605292375000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comC++ code now gives correct results in standalone on the CPU 2020-11-13 13:32:55 -0500d13db34a59007418c50cef98560a35c32e59fccdC++ code now gives correct results in standalone on the CPUeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/samxx_const.hcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlbb017e2eb0e89c4d4e2496250a8efa88752014f41605292381000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix aqua compset for MMF w/ SAM++ modified: components/eam/cime_config/config_component.xml modified: components/eam/cime_config/config_compsets.xml 2020-11-13 13:33:01 -0500bb017e2eb0e89c4d4e2496250a8efa88752014f4Fix aqua compset for MMF w/ SAM++editcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/test/build/runtest.shcomponents/eam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/eam/src/physics/crm/samxx/test/README.mdcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/eam/src/physics/crm/samxx/test/build/nccmp.pycomponents/eam/src/physics/crm/samxx/test/build/run_standalone_batch.shcomponents/eam/src/physics/crm/samxx/README.mdcomponents/eam/src/physics/crm/samxx/test/build/README.mdcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/eam/src/physics/crm/samxx/test/build/summit_gpu.sh7e5f3ca0948affe8a8fa7c72956d8838f03fb2791605292385000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate MMF standalone test files deleted: components/eam/src/physics/crm/samxx/README.md new file: components/eam/src/physics/crm/samxx/test/README.md deleted: components/eam/src/physics/crm/samxx/test/build/README.md modified: components/eam/src/physics/crm/samxx/test/build/cmakescript.sh modified: components/eam/src/physics/crm/samxx/test/build/nccmp.py new file: components/eam/src/physics/crm/samxx/test/build/run_standalone_batch.sh modified: components/eam/src/physics/crm/samxx/test/build/runtest.sh modified: components/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.sh modified: components/eam/src/physics/crm/samxx/test/build/summit_gpu.sh modified: components/eam/src/physics/crm/samxx/test/cpp_driver.F90 2020-11-13 13:33:05 -05007e5f3ca0948affe8a8fa7c72956d8838f03fb279Update MMF standalone test filesaddcomponents/eam/src/physics/crm/samxx/test/build/run_standalone_batch.sheditcomponents/eam/src/physics/crm/samxx/test/build/runtest.sheditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90deletecomponents/eam/src/physics/crm/samxx/README.mdaddcomponents/eam/src/physics/crm/samxx/test/README.mdeditcomponents/eam/src/physics/crm/samxx/test/build/nccmp.pydeletecomponents/eam/src/physics/crm/samxx/test/build/README.mdeditcomponents/eam/src/physics/crm/samxx/test/build/cmakescript.sheditcomponents/eam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/eam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/eam/src/physics/crm/samxx/diffuse_scalar2D.cppdfa9be34d5e307cf5e81474a0582a71cbe32683d1605292392000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMajor bug fix - index error in SAM++ scalar diff modified: components/eam/src/physics/crm/samxx/diffuse_scalar2D.cpp modified: components/eam/src/physics/crm/samxx/diffuse_scalar3D.cpp 2020-11-13 13:33:12 -0500dfa9be34d5e307cf5e81474a0582a71cbe32683dMajor bug fix - index error in SAM++ scalar diffeditcomponents/eam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/eam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/eam/src/physics/crm/sam/kurant.F90components/eam/src/physics/crm/samxx/kurant.cpp873e95a1eb2550d63440770078b8778be1025a6a1605292396000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCRM Kurant update Make both Fortran and C++ CRM code to use max_ncycle = 4 modified: components/eam/src/physics/crm/sam/kurant.F90 modified: components/eam/src/physics/crm/samxx/kurant.cpp 2020-11-13 13:33:16 -0500873e95a1eb2550d63440770078b8778be1025a6aCRM Kurant updateeditcomponents/eam/src/physics/crm/samxx/kurant.cppeditcomponents/eam/src/physics/crm/sam/kurant.F90components/eam/src/physics/crm/samxx/setperturb.cppacd2d3f15bc499cf6f0bfd5af9d1b65f533629401605292400000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate perturb_t_magnitude in SAM++ modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2020-11-13 13:33:20 -0500acd2d3f15bc499cf6f0bfd5af9d1b65f53362940Update perturb_t_magnitude in SAM++editcomponents/eam/src/physics/crm/samxx/setperturb.cppcomponents/eam/src/physics/crm/samxx/ice_fall.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/tke_full.cppcomponents/eam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/advect2_mom_z.cppcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/crmsurface.cppcomponents/eam/src/physics/crm/samxx/diagnose.cppcomponents/eam/src/physics/crm/samxx/damping.cppcomponents/eam/src/physics/crm/samxx/samxx_const.he7632510af91b75becae622b013a8a52c5ca08ad1605292404000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMisc C++ casting and index updates modified: components/eam/src/physics/crm/samxx/advect2_mom_z.cpp modified: components/eam/src/physics/crm/samxx/crmsurface.cpp modified: components/eam/src/physics/crm/samxx/damping.cpp modified: components/eam/src/physics/crm/samxx/diagnose.cpp modified: components/eam/src/physics/crm/samxx/diffuse_mom3D.cpp modified: components/eam/src/physics/crm/samxx/ice_fall.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/samxx_const.h modified: components/eam/src/physics/crm/samxx/tke_full.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp 2020-11-13 13:33:24 -0500e7632510af91b75becae622b013a8a52c5ca08adMisc C++ casting and index updateseditcomponents/eam/src/physics/crm/samxx/crmsurface.cppeditcomponents/eam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/diagnose.cppeditcomponents/eam/src/physics/crm/samxx/ice_fall.cppeditcomponents/eam/src/physics/crm/samxx/tke_full.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/eam/src/physics/crm/samxx/damping.cppeditcomponents/eam/src/physics/crm/samxx/samxx_const.heditcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/dynamics/se/se_single_column_mod.F907d3c822b71f49f7e3871648c40a9e8713501a3571605293437000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govrename dummy1 variable to temp_tend, which is more descriptive 2020-11-13 10:50:37 -08007d3c822b71f49f7e3871648c40a9e8713501a357rename dummy1 variable to temp_tend, which is more descriptiveeditcomponents/eam/src/dynamics/se/se_single_column_mod.F90SCM_clubb_silhs_tau.cshf2162525a4b8a2541a76a03abbae2e1ee37413811605297533000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis run script can reproduce good simulations for both SCM cases BOMEX and RF01. Issue #18. 2020-11-13 13:58:53 -0600f2162525a4b8a2541a76a03abbae2e1ee3741381This run script can reproduce good simulations for both SCM cases BOMEX and RF01. Issue #18.addSCM_clubb_silhs_tau.cshcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/cam/physics_types.F90components/cam/src/physics/cam/physics_update_mod.F90cime/src/share/util/shr_assert_mod.F90.inrun_silhs_anvil_gust.cshcomponents/cam/src/utils/cam_grid_support.F90components/cam/src/physics/cam/physpkg.F90cime/src/externals/pio1/pio/piodarray.F90.in8bff98c61cbabba3bd84d2eca79aa7aa0694a1fa1605308640000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore 'state_debug_checks' in physpkg.F90, also output the location when we find bad value of state%t. 2020-11-13 17:04:00 -06008bff98c61cbabba3bd84d2eca79aa7aa0694a1faMore 'state_debug_checks' in physpkg.F90, also output the location when we find bad value of state%t.editcomponents/cam/src/physics/cam/physics_types.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/cam/physics_update_mod.F90editrun_silhs_anvil_gust.csheditcime/src/share/util/shr_assert_mod.F90.ineditcomponents/cam/src/utils/cam_grid_support.F90editcomponents/cam/src/physics/cam/physpkg.F90editcime/src/externals/pio1/pio/piodarray.F90.incomponents/eam/cime_config/testdefs/testmods_dirs/eam/genmmf/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamcime_config/tests.py2076eb8d20c5f9d4eff0c184ae364e8137e0c4c91605341527000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfix mmf tests 2020-11-14 02:12:07 -06002076eb8d20c5f9d4eff0c184ae364e8137e0c4c9fix mmf testseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eameditcime_config/tests.pyaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/genmmf/user_nl_eamcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elm96843c011f34a3a7d7ec0bd25406ff0ac1123f061605576323000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes namelist options for a test 2020-11-16 17:25:23 -080096843c011f34a3a7d7ec0bd25406ff0ac1123f06Fixes namelist options for a testeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elma529345c7405a743bd55fd4740751255d43481221605589594000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govfixes the path surface dataset 2020-11-16 21:06:34 -0800a529345c7405a743bd55fd4740751255d4348122fixes the path surface dataseteditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elmcomponents/homme/src/share/prim_driver_base.F9072f3bea00fd51f3e05ddfc0db92a5add45bdd64f1605631726000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govput SCM logical around SCM specific code block 2020-11-17 08:48:46 -080072f3bea00fd51f3e05ddfc0db92a5add45bdd64fput SCM logical around SCM specific code blockeditcomponents/homme/src/share/prim_driver_base.F90components/mpas-sourceb7079aa9f8a5b0a336bb7b0e53ec7204e2e054981605649035000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: updated sea ice with alignment of atmos coupling 2020-11-17 15:37:15 -0600b7079aa9f8a5b0a336bb7b0e53ec7204e2e05498Update mpas-source: updated sea ice with alignment of atmos couplingeditcomponents/mpas-sourcecomponents/eam/src/physics/crm/sam/crm_module.F90d5ff64dd9849b88260e07551675c24366fe5c6831605739344000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comtypo fix modified: components/eam/src/physics/crm/sam/crm_module.F90 2020-11-18 17:42:24 -0500d5ff64dd9849b88260e07551675c24366fe5c683typo fixeditcomponents/eam/src/physics/crm/sam/crm_module.F90cime_config/machines/config_pio.xml941ee1a6e508c70fbb4ec9d08704055c912360d31605757766000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govSet PIO_ROOT=1 for ne30-coupled cases on sandiatoss3 2020-11-18 21:49:26 -0600941ee1a6e508c70fbb4ec9d08704055c912360d3Set PIO_ROOT=1 for ne30-coupled cases on sandiatoss3editcime_config/machines/config_pio.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcomponents/homme/src/share/prim_driver_base.F90components/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/src/dynamics/se/se_single_column_mod.F90d19673f5bf22d94343723184c193997414c60f251605889189000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1538.llnl.govremove SCM from SL tracer advection 2020-11-20 08:19:49 -0800d19673f5bf22d94343723184c193997414c60f25remove SCM from SL tracer advectioneditcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90.travis/run.sh68af6b85d378fc8aa1115bf63df9d6bbc807091d1605901596000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govtravis: Print e3sm bldlog if build fails This is, by far, the most important one to print. 2020-11-20 12:46:36 -070068af6b85d378fc8aa1115bf63df9d6bbc807091dtravis: Print e3sm bldlog if build failsedit.travis/run.shcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandscime_config/machines/config_pio.xmlcime_config/tests.py9d0020a37bdd1a5bd35c4c3fb141855cf0042e871605902964000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govMove PIO_ROOT=1 mod to ERP testmod 2020-11-20 14:09:24 -06009d0020a37bdd1a5bd35c4c3fb141855cf0042e87Move PIO_ROOT=1 mod to ERP testmodaddcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandseditcime_config/tests.pyeditcime_config/machines/config_pio.xmlcime3310ef235e8b87a77a9184f3d550fc385a70007f1605903603000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govFix build time calls 2020-11-20 13:20:03 -07003310ef235e8b87a77a9184f3d550fc385a70007fFix build time callseditcimecime845e73aaea9d7dc7d46d4b6669953ed4bd3c26291605904274000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCheck time availability 2020-11-20 13:31:14 -0700845e73aaea9d7dc7d46d4b6669953ed4bd3c2629Check time availabilityeditcimecimebb5738e41235259bb5455696896be821f4bcc2411605906200000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAnother cime build fix 2020-11-20 14:03:20 -0700bb5738e41235259bb5455696896be821f4bcc241Another cime build fixeditcimecime4a56128c9aff4a38db5148262520845d424524971605911580000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime again with new prov stuff 2020-11-20 15:33:00 -07004a56128c9aff4a38db5148262520845d42452497Update cime again with new prov stuffeditcimecomponents/homme/src/share/prim_driver_base.F90151afd0056e26340c51512eeee007de3680e220c1605914098000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz2306.llnl.govfurther extration from SL transport in SCM 2020-11-20 15:14:58 -0800151afd0056e26340c51512eeee007de3680e220cfurther extration from SL transport in SCMeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F901f7a0891dedec9dd6a36ed818d6fcf95aac27aa31605917560000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govcleanup 2020-11-20 16:12:40 -08001f7a0891dedec9dd6a36ed818d6fcf95aac27aa3cleanupeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F909d6a9196c5f716e4ea68d0aed801edaa2fd1f2f21605919101000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govwhitespace issue fix 2020-11-20 16:38:21 -08009d6a9196c5f716e4ea68d0aed801edaa2fd1f2f2whitespace issue fixeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F909149e30b3bdb330438ac684229eb14994095bf281605919327000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govlinebreak fix 2020-11-20 16:42:07 -08009149e30b3bdb330438ac684229eb14994095bf28linebreak fixeditcomponents/homme/src/share/prim_driver_base.F90cime6b02dba318d92d3886f2e4b266bd1b8f90a629191605987730000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govfinal cime update 2020-11-21 12:42:10 -07006b02dba318d92d3886f2e4b266bd1b8f90a62919final cime updateeditcimecomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xml7b928be54e0d8abd25c4370d4bac3d883e4fbc531606171253000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1532.llnl.govremove unnecessary nu parameter from SCM namelist settings 2020-11-23 14:40:53 -08007b928be54e0d8abd25c4370d4bac3d883e4fbc53remove unnecessary nu parameter from SCM namelist settingseditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandscime_config/testmods_dirs/allactive/pioroot1/shell_commandscime_config/tests.py33007ff1d33c5775fdeead0500e929c82ff8d8d51606175536000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate ERP testmod 2020-11-23 17:52:16 -060033007ff1d33c5775fdeead0500e929c82ff8d8d5Update ERP testmodeditcime_config/tests.pydeletecime_config/testmods_dirs/allactive/force_pio_root1/shell_commandsaddcime_config/testmods_dirs/allactive/pioroot1/shell_commandscomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlfaa2eddaca782efd074135543ec66541c679c4de1606243527000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgswitch theta-l dycore to tensorHV 2020-11-24 12:45:27 -0600faa2eddaca782efd074135543ec66541c679c4deswitch theta-l dycore to tensorHVeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml9364a2e53e2a0e10b0a82662066b94aaf5783e531606254243000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgall hgrid= conditions need a dyn_target= also 2020-11-24 15:44:03 -06009364a2e53e2a0e10b0a82662066b94aaf5783e53all hgrid= conditions need a dyn_target= alsoeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mosart/src/riverroute/RtmRestFile.F90components/mosart/src/riverroute/RtmIO.F90components/mosart/src/riverroute/RtmHistFile.F901a4c0f3b49eeda037ffd4db407793026f204aa201606263309000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govIncrease MOSART restart file name lengths 2020-11-24 18:15:09 -06001a4c0f3b49eeda037ffd4db407793026f204aa20Increase MOSART restart file name lengthseditcomponents/mosart/src/riverroute/RtmRestFile.F90editcomponents/mosart/src/riverroute/RtmIO.F90editcomponents/mosart/src/riverroute/RtmHistFile.F90cime_config/testmods_dirs/allactive/wcprod/READMEcime_config/testmods_dirs/allactive/wcprod/user_nl_elmcime_config/testmods_dirs/allactive/wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/wcprod/shell_commandscime_config/testmods_dirs/allactive/wcprod/user_nl_eame97442f31278f271df0266b0af9f40387d1783161606347953000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd wcprod test mod Add wcprod test mod which is initially set to reproduce settings for v2 tuning runs. Leave version out of name of test mod so it can adapt to whatever wcprod needs as code evolves. 2020-11-25 17:45:53 -0600e97442f31278f271df0266b0af9f40387d178316Add wcprod test modaddcime_config/testmods_dirs/allactive/wcprod/user_nl_elmaddcime_config/testmods_dirs/allactive/wcprod/READMEaddcime_config/testmods_dirs/allactive/wcprod/user_nl_eamaddcime_config/testmods_dirs/allactive/wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/wcprod/user_nl_mpasocime_config/machines/config_machines.xmlcb6683e2e4b7840fbc0aa732afa6653c34405d271606348590000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate Blues modules to nvhpc 2020-11-25 17:56:30 -0600cb6683e2e4b7840fbc0aa732afa6653c34405d27Update Blues modules to nvhpceditcime_config/machines/config_machines.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml81aa9e8071926119e7a6e2ad0f22f325ef5730461606355059000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchange 3 to 3.0 2020-11-25 19:44:19 -060081aa9e8071926119e7a6e2ad0f22f325ef573046change 3 to 3.0editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/phys_grid.F900801eb8572ae11ffecc86cf616ee55c3e23642c81606593194000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comReplace array reference argument with a scalar The call to call proc_heap_adjust(inv_proc_heap(ntmp2), proc_heap_remove, & max_nvsmptasks, proc_heap_len, proc_heap, & proc_cost, inv_proc_heap) in phys_grid.F90 where subroutine proc_heap_adjust(updated, remove, heap_dlen, & heap_len, heap, cost, inv_heap) ... integer, intent(in) :: updated ... integer, intent(inout) :: inv_heap(0:npes-1) modifies 'inv_heap' in the routine proc_heap_adjust, and changes the value at the location 'inv_proc_heap(ntmp2)'. Compilation with optimization greater than -O0 apparently caches this value (since it is declared 'intent(in)'), so 'updated' is not changed within the scope of the 'proc_heap_adjust' routine. -O0 compilation does not, changing the value on 'updated' internally when 'inv_proc_heap(ntmp2)' is changed, which causes a failure. This bug is fixed by changing the call as follows: integer :: updated ... updated = inv_proc_heap(ntmp2) call proc_heap_adjust(updated, proc_heap_remove, & max_nvsmptasks, proc_heap_len, proc_heap, & proc_cost, inv_proc_heap) [BFB] 2020-11-28 13:53:14 -06000801eb8572ae11ffecc86cf616ee55c3e23642c8Replace array reference argument with a scalareditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/src/physics/cam/phys_grid.F9071b980e5cc6ef4371379962849b38adae5b024cd1606594543000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comFix mis-declared variables The local variables real(r8):: proc_ip ! process id of parent of current element real(r8):: proc_il ! process id of left child of current element real(r8):: proc_ir ! process id of right child of current element in the routine proc_heap_adjust in phys_grid.F90 are mis-declared. These should be integer (though the error is innocuous except for the Cray compiler). [BFB] 2020-11-28 14:15:43 -060071b980e5cc6ef4371379962849b38adae5b024cdFix mis-declared variableseditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/src/physics/cam/phys_grid.F90b4fb6c5e8698998816aafd56cfef4aedcc53bb2c1606660150000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comExplain why replacing array reference argument with a scalar To prevent future changes from undoing this bug fix, added a comment to explain why this is needed. [BFB] 2020-11-29 08:29:10 -0600b4fb6c5e8698998816aafd56cfef4aedcc53bb2cExplain why replacing array reference argument with a scalareditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_elmcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_eam520161f030419bfb21c7031a8bd8a3a2fb02a03a1606699938000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd wcprod test mod for eam Add wcprod test mod for eam. Leave version out of name of test mod so it can adapt to whatever wcprod needs as code evolves. Initial values are those in v2 tuning runs 2020-11-29 19:32:18 -0600520161f030419bfb21c7031a8bd8a3a2fb02a03aAdd wcprod test mod for eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_elmcime_config/tests.pycbc6092dc785b12178a68a73deac0f18b0ecd1f71606704109000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate e3sm_prod suite to v2 cases Use v2 tri-grid resolutions and all CMIP6 compsets. Also add test mods that use theta-l and other v2 settings. 2020-11-29 20:41:49 -0600cbc6092dc785b12178a68a73deac0f18b0ecd1f7Update e3sm_prod suite to v2 caseseditcime_config/tests.pycomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandsd2068389298b9ef38902613d9d2baa2cf3bc16f41606755849000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges NTASKS for ELM-USRDAT test ELM-USRDAT is a single-point test, so NTASKS are set to 1. [BFB] 2020-11-30 09:04:09 -0800d2068389298b9ef38902613d9d2baa2cf3bc16f4Changes NTASKS for ELM-USRDAT testeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscime_config/machines/config_machines.xmld0b958475083d277d592b38acda6014a1af7295c1606764573000http://carson.math.uwm.edu/jenkins/user/sarichsarichsarich@mcs.anl.govaccount name on bebop cluster has been renamed 'e3sm' 2020-11-30 13:29:33 -0600d0b958475083d277d592b38acda6014a1af7295caccount name on bebop cluster has been renamed 'e3sm'editcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cosp2/optics/cosp_optics.F90d6a358eb89464e19aa9f037cbf99da21d148d9221606775829000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govBug fix to account for snow backscattering in COSPv2 Fix a bug related to the calculation of separated ice attenuated backscatter in lidar simulator. The issue was found by Greg Cesana. The snow is not well accounted for in the separated ice and liquid attenuated backscatter signal (although it's fine for the total attenuated backscatter). It has to do with the "npart" indices. The snow index is 5 and is not accounted for in COSPv2. This has potentially large impact on cloud phase diagnostics from the lidar simulator. [BFB] except for COSP diagnostics 2020-11-30 14:37:09 -0800d6a358eb89464e19aa9f037cbf99da21d148d922Bug fix to account for snow backscattering in COSPv2editcomponents/eam/src/physics/cosp2/optics/cosp_optics.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F906668bde97b927289057bc40370816158e1ea3ad51606780407000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes some comments and magic numbers 2020-11-30 15:53:27 -08006668bde97b927289057bc40370816158e1ea3ad5Fixes some comments and magic numberseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90a3a71e20e8f2eb1a98bcd4e4ef1313b54cc1f4761606799027000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comPointed pointer to null 2020-11-30 21:03:47 -0800a3a71e20e8f2eb1a98bcd4e4ef1313b54cc1f476Pointed pointer to nulleditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90b870ebc038e0a833569df1c9ae7e6abd945407151606853040000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes GNU bug differently to allow BFB results. 2020-12-01 12:04:00 -0800b870ebc038e0a833569df1c9ae7e6abd94540715Fixes GNU bug differently to allow BFB results.editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eam528eec23059667c302953f4720feef258aa4daa11606873712000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comremove some of settings in ftype tests 2020-12-01 19:48:32 -0600528eec23059667c302953f4720feef258aa4daa1remove some of settings in ftype testseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commands7914f00ef19d21111676c49c424ea477ceae66d51606936738000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.commake bgc tests use theta 2020-12-02 13:18:58 -06007914f00ef19d21111676c49c424ea477ceae66d5make bgc tests use thetaeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commandscomponents/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xml43393e9c75067a9150db8b20e413a41406e8ca631607014900000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges that address review comments Few *CLM* variables are changed to *ELM* 2020-12-03 09:01:40 -080043393e9c75067a9150db8b20e413a41406e8ca63Changes that address review commentseditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/eam/src/dynamics/fv/dyn_grid.F90components/cam/src/chemistry/utils/input_data_utils.F90components/eam/src/cpl/atm_import_export.F90components/cam/src/utils/srf_field_check.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/chemistry/utils/tracer_data.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/co2_data_flux.F90components/eam/src/physics/cam/co2_cycle.F90components/eam/src/physics/cam/vertical_diffusion.F90components/eam/src/chemistry/utils/aircraft_emit.F90components/eam/bld/build-namelist102f3b327c8e1ced7c8191d58b34c8d3aa0721a71607017100000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRebased again for cam->eam change(12/02/2020) Adds support for co2 vertical interpolation The code changes introduced via PR #2303 (hash on master 7fbec4f) facilitated horizontal interpolation but was missing the vertical interpolation. I have created a dummy state variable so that the interpolation routines can read interface heights from the state to enable vertical interpolation. co2 tracer can be enabled only if we add -co2_cycle to CAM_CONFIG_OPTS in env_build.xml file. To enable bi-linear interpolation, we also need to add -cppdefs -DCO2_BILIN_REGRID to CAM_CONFIG_OPTS in env_build.xml file. [BFB] - Bit-For-Bit Fixes a comment to better reflect the purpose of state variable [BFB] - Bit-For-Bit Data files on same grid as model: working for ne4,ne30 Some code changes for adding debug info is added in this commit. This code should be reverted back to original Adds error handling for different grids A commit to save changes before moving towards CAM implementation Working code with CESM codes Adds code to read aircraft co2 on native grid At this point, code reads aircraft data files on a native grid. We still need to add vertical interpolation and unit conversion code. Aircraft emissions also need to be added to the model state as tendency. Add in code draft for vertical interpolation and unit conversions to aircraft emissions forces time interpolation adds delta days to aircraft emission read init A commit with some debug print statements This can be deleted later Some changes after rebase adds some more missing changes after rebase Adds some build related files after rebase changes debug variable for aircraft emiss debug changes to ncdio_atm.F90, can be removed later A commit with some debug changes Removes some debugging code Most recent changes from Bryce workaround for 2d arrays some cleanup after 3rd rebase Cleanup - removes some debug statements Added back in code necessary to output aircraft emissions to tape; corrected dtime for aircraft emissions; added some clarifying comments 2020-12-03 09:38:20 -0800102f3b327c8e1ced7c8191d58b34c8d3aa0721a7Rebased again for cam->eam change(12/02/2020)addcomponents/cam/src/utils/srf_field_check.F90editcomponents/eam/src/physics/cam/vertical_diffusion.F90editcomponents/eam/src/chemistry/utils/tracer_data.F90editcomponents/eam/src/cpl/atm_import_export.F90addcomponents/cam/src/chemistry/utils/input_data_utils.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90editcomponents/eam/src/physics/cam/co2_cycle.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/dynamics/fv/dyn_grid.F90editcomponents/eam/src/physics/cam/co2_data_flux.F90components/eam/src/physics/cam/co2_data_flux.F90components/eam/src/chemistry/utils/aircraft_emit.F9095d15352fe696e44529daa7fa448117049eb6a7d1607021273000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfixed a typo and removed a comment 2020-12-03 10:47:53 -080095d15352fe696e44529daa7fa448117049eb6a7dfixed a typo and removed a commenteditcomponents/eam/src/physics/cam/co2_data_flux.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90.gitmodules67c5c8df2f2fd01a8fc01856bfba005bce8c8dce1607022983000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved references to "cam" in comments about submodule paths 2020-12-03 11:16:23 -080067c5c8df2f2fd01a8fc01856bfba005bce8c8dceRemoved references to "cam" in comments about submodule pathsedit.gitmodules.gitmodulesef090c4eaef1247054a879fd7730dff852ffb0e91607037532000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfixed typo and removed a reference to clm as well 2020-12-03 15:18:52 -0800ef090c4eaef1247054a879fd7730dff852ffb0e9fixed typo and removed a reference to clm as welledit.gitmodulescomponents/elm/.DS_Stored49f18a05ac768a7fe055145cd25559207b3ce431607060012000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves a file that was mistakenly added earlier 2020-12-03 21:33:32 -0800d49f18a05ac768a7fe055145cd25559207b3ce43Removes a file that was mistakenly added earlierdeletecomponents/elm/.DS_Storecomponents/eam/src/control/cam_history.F908018bce301f3c199026a73ac4bbfeab54a2a5b111607141655000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govInitialize mixing ratio when reading restarts Initialize mixing ratio for fields in the history list while reading data from restart files. Without this initialization the string can contain invalid values and result in the value (uninitialized/invalid value) being written out as field attributes for the variables in the EAM history files. 2020-12-04 22:14:15 -06008018bce301f3c199026a73ac4bbfeab54a2a5b11Initialize mixing ratio when reading restartseditcomponents/eam/src/control/cam_history.F90components/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xml63de644861d916e3eaaad91673f369201095bef41607363005000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves clm4_0 and clm5_0 from compset namelist 2020-12-07 09:43:25 -080063de644861d916e3eaaad91673f369201095bef4Removes clm4_0 and clm5_0 from compset namelisteditcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmlcomponents/elm/bld/config_files/config_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmlcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmlcomponents/elm/bld/namelist_files/namelist_defaults_usr_files.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_control.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6LR_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6LR_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_transient.xmlcomponents/elm/cime_config/config_component.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6HR_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_CMIP6bgc_transient.xmlcomponents/elm/bld/configurecomponents/elm/bld/namelist_files/use_cases/1950_CMIP6HR_control.xml21a5e1bcea0cccfce92f7159bca09e3a949bc9321607363011000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the namelist build scripts - Removes clm4_0 and clm5_0 options - Changes clm4_5 to elm 2020-12-07 09:43:31 -080021a5e1bcea0cccfce92f7159bca09e3a949bc932Updates the namelist build scriptseditcomponents/elm/bld/config_files/config_definition_clm4_5.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_control.xmleditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6HR_control.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_usr_files.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmleditcomponents/elm/cime_config/config_component.xmleditcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6LR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6HR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_CMIP6bgc_transient.xmleditcomponents/elm/bld/configureeditcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6LR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmlcomponents/elm/bld/configurecomponents/elm/bld/CLMBuildNamelist.pm3660928c694df0e1dffbb910bc9a09a20d97675e1607363017000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates indenting 2020-12-07 09:43:37 -08003660928c694df0e1dffbb910bc9a09a20d97675eUpdates indentingeditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/configurecomponents/elm/bld/config_files/config_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/config_files/config_definition.xmlcomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/configurecomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlb17e48c8a6d9fd0a4a002fb881918000bbd8a3ac1607363024000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames xml files 2020-12-07 09:43:44 -0800b17e48c8a6d9fd0a4a002fb881918000bbd8a3acRenames xml filesaddcomponents/elm/bld/config_files/config_definition.xmldeletecomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/CLMBuildNamelist.pmdeletecomponents/elm/bld/config_files/config_definition_clm4_5.xmleditcomponents/elm/bld/configuredeletecomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmladdcomponents/elm/bld/namelist_files/namelist_definition.xmladdcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/ELMBuildNamelist.pmcomponents/elm/bld/build-namelistcomponents/elm/bld/CLMBuildNamelist.pm4b3f7afb51979ae4533527d80ddf20486f343e031607363048000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames builds perl script 2020-12-07 09:44:08 -08004b3f7afb51979ae4533527d80ddf20486f343e03Renames builds perl scriptdeletecomponents/elm/bld/CLMBuildNamelist.pmaddcomponents/elm/bld/ELMBuildNamelist.pmeditcomponents/elm/bld/build-namelistcomponents/elm/bld/test_build_namelist/t/test_lnd_frac.pmcomponents/elm/bld/unit_testers/xFail/wrapClmTests.plcomponents/elm/bld/test_build_namelist/t/test_vichydro.pmcomponents/elm/bld/unit_testers/xFail/expectedFail.pmcomponents/elm/bld/test_build_namelist/t/input/namelist_definition_clm4_5_test.xmlcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/MethodInfo.pmcomponents/elm/bld/unit_testers/NMLTest/CompFiles.pmcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class.pmcomponents/elm/bld/test_build_namelist/READMEcomponents/elm/bld/test_build_namelist/t/test_setup_cmdl_run_type.pmcomponents/elm/bld/unit_testers/xFail/expectedClmTestFails.xmlcomponents/elm/bld/test_build_namelist/perl5lib/MRO/Compat.pmcomponents/elm/bld/test_build_namelist/perl5lib/Sub/Uplevel.pmcomponents/elm/bld/test_build_namelist/t/template_test_XXX.pmcomponents/elm/bld/test_build_namelist/test_build_namelist.plcomponents/elm/bld/unit_testers/build-namelist_test.plcomponents/elm/bld/test_build_namelist/t/input/config_cache_clm4_5_test.xmlcomponents/elm/bld/unit_testers/myuser_nl_clmcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/Load.pmcomponents/elm/bld/test_build_namelist/t/input/namelist_defaults_clm4_5_test.xmlcomponents/elm/bld/test_build_namelist/perl5lib/Test/Exception.pme50f60c2208673616e3a840a7e73ce0ad9821daa1607363055000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemove tests not used by ELM 2020-12-07 09:44:15 -0800e50f60c2208673616e3a840a7e73ce0ad9821daaRemove tests not used by ELMdeletecomponents/elm/bld/unit_testers/xFail/wrapClmTests.pldeletecomponents/elm/bld/test_build_namelist/READMEdeletecomponents/elm/bld/test_build_namelist/perl5lib/MRO/Compat.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Sub/Uplevel.pmdeletecomponents/elm/bld/unit_testers/myuser_nl_clmdeletecomponents/elm/bld/test_build_namelist/t/test_setup_cmdl_run_type.pmdeletecomponents/elm/bld/test_build_namelist/t/template_test_XXX.pmdeletecomponents/elm/bld/unit_testers/build-namelist_test.pldeletecomponents/elm/bld/unit_testers/xFail/expectedFail.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/MethodInfo.pmdeletecomponents/elm/bld/test_build_namelist/test_build_namelist.pldeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/Load.pmdeletecomponents/elm/bld/test_build_namelist/t/test_lnd_frac.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Exception.pmdeletecomponents/elm/bld/test_build_namelist/t/input/config_cache_clm4_5_test.xmldeletecomponents/elm/bld/test_build_namelist/t/input/namelist_definition_clm4_5_test.xmldeletecomponents/elm/bld/test_build_namelist/t/test_vichydro.pmdeletecomponents/elm/bld/test_build_namelist/t/input/namelist_defaults_clm4_5_test.xmldeletecomponents/elm/bld/unit_testers/NMLTest/CompFiles.pmdeletecomponents/elm/bld/unit_testers/xFail/expectedClmTestFails.xmldeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class.pmcomponents/elm/bld/config_files/clm_phys_vers.pm34d419b3e901d21b096b29a82980e00bbb84b3c51607363068000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves script to determine verion of the model 2020-12-07 09:44:28 -080034d419b3e901d21b096b29a82980e00bbb84b3c5Removes script to determine verion of the modeldeletecomponents/elm/bld/config_files/clm_phys_vers.pmcomponents/elm/bld/READMEcomponents/elm/bld/queryDefaultNamelist.plcomponents/elm/bld/listDefaultNamelist.plcomponents/elm/bld/namelist_files/namelist_defaults.xsl7c45e8117204030d178cdd6a9b7412eb4bd37cce1607363075000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves clm4_0 2020-12-07 09:44:35 -08007c45e8117204030d178cdd6a9b7412eb4bd37cceRemoves clm4_0editcomponents/elm/bld/listDefaultNamelist.pleditcomponents/elm/bld/namelist_files/namelist_defaults.xsleditcomponents/elm/bld/READMEeditcomponents/elm/bld/queryDefaultNamelist.plcomponents/elm/cime_config/config_component.xmlcomponents/elm/cime_config/buildnml5b1b2bfc20e241d4ed048c20241f170e59eb18101607363195000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames namelist options from CLM to ELM 2020-12-07 09:46:35 -08005b1b2bfc20e241d4ed048c20241f170e59eb1810Renames namelist options from CLM to ELMeditcomponents/elm/cime_config/config_component.xmleditcomponents/elm/cime_config/buildnmlcomponents/cam/src/chemistry/utils/input_data_utils.F90components/cam/src/utils/srf_field_check.F90components/eam/src/chemistry/utils/input_data_utils.F90components/eam/src/utils/srf_field_check.F901514243758e1c3e7322481e40fc272a96beacbe21607383316000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govMoved new files into the eam directory structure 2020-12-07 15:21:56 -08001514243758e1c3e7322481e40fc272a96beacbe2Moved new files into the eam directory structureaddcomponents/eam/src/chemistry/utils/input_data_utils.F90addcomponents/eam/src/utils/srf_field_check.F90deletecomponents/cam/src/chemistry/utils/input_data_utils.F90deletecomponents/cam/src/utils/srf_field_check.F90components/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/drydepnomegan/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/betr/shell_commands866edde068f29df4615a261cc6324e98eaa6ea5f1607383728000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes build options in few tests 2020-12-07 15:28:48 -0800866edde068f29df4615a261cc6324e98eaa6ea5fFixes build options in few testseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/drydepnomegan/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/betr/shell_commandscime_config/allactive/config_pesall.xmlcime_config/machines/config_machines.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_batch.xml98c8f2cd442c7766c76de5160e33454377eb5bdb1607396345000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd Chrysalis machine configuration 2020-12-07 20:59:05 -060098c8f2cd442c7766c76de5160e33454377eb5bdbAdd Chrysalis machine configurationeditcime_config/machines/config_machines.xmleditcime_config/allactive/config_pesall.xmleditcime_config/machines/config_compilers.xmleditcime_config/machines/config_batch.xmlcime_config/machines/config_machines.xml73b54947c7f8da8c0ec3c50f07f60674358942cd1607397799000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd new Chrysalis modules after storage upgrade 2020-12-07 21:23:19 -060073b54947c7f8da8c0ec3c50f07f60674358942cdAdd new Chrysalis modules after storage upgradeeditcime_config/machines/config_machines.xmlcomponents/homme/src/theta-l/share/model_init_mod.F9093f6f357955b6450d60169dd7878eb78ee810db51607404177000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdd omp master to a section of code in init that would otherwise have a race condition. DEBUG builds would see the issue, but a chance could also happen without DEBUG. Also add omp barrier after the omp master section. [bfb] 2020-12-07 21:09:37 -080093f6f357955b6450d60169dd7878eb78ee810db5Add omp master to a section of code in init that would otherwise have a race condition.editcomponents/homme/src/theta-l/share/model_init_mod.F90components/homme/src/theta-l/share/model_init_mod.F904ba99e1b3870e57cc5bec78c4316ebeac9abb5d01607414546000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govMoved the shared nlev_tom variable initialization to be set only once by master thread. Also missed the "end" of master section -- omp end master 2020-12-08 00:02:26 -08004ba99e1b3870e57cc5bec78c4316ebeac9abb5d0Moved the shared nlev_tom variable initialization to be set only once by master thread.editcomponents/homme/src/theta-l/share/model_init_mod.F90components/eam/src/physics/cam/modal_aer_opt.F9064235f50cce6cf0d3d53e0f0bafc2388adc7e5bc1607452432000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govInit an array to zero. momaod(:ncol) = 0._r8 [bfb] 2020-12-08 10:33:52 -080064235f50cce6cf0d3d53e0f0bafc2388adc7e5bcInit an array to zero.editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/modal_aer_opt.F9073f127854607c9f8b84d4a968b1a9fd76dcbcbc51607454742000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govThere were 3 other arrays that should also be set to zero before use, but these are only used when compiled with MODAL_AERO_9MODE polyaod(:ncol) = 0._r8 protaod(:ncol) = 0._r8 lipaod(:ncol) = 0._r8 Should be bfb, but have not tested with MODAL_AERO_9MODE 2020-12-08 11:12:22 -080073f127854607c9f8b84d4a968b1a9fd76dcbcbc5There were 3 other arrays that should also be set to zero before use, but theseeditcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/modal_aer_opt.F902d609ced871835dace6e925e241533ff6b3b5c1b1607461769000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govMove where the AOD arrays are initialized to zero. My first commit had these in the wrong location. Also, remove some duplicate lines of codes that init same array. 2020-12-08 13:09:29 -08002d609ced871835dace6e925e241533ff6b3b5c1bMove where the AOD arrays are initialized to zero.editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/aircraft_emit.F90b0e4f13dd51a1d57636968728b35728c0650d25e1607545079000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes some strings, all dev tests pass with PGI on Compy Except for the known fails 2020-12-09 12:17:59 -0800b0e4f13dd51a1d57636968728b35728c0650d25eFixes some strings, all dev tests pass with PGI on Compyeditcomponents/eam/src/chemistry/utils/aircraft_emit.F90components/eam/src/physics/cam/co2_data_flux.F90components/eam/src/chemistry/utils/aircraft_emit.F905481659fcb19093a2c511de469ad6ab94e32a7fa1607551421000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comConverts integers to logicals in two if conditions 2020-12-09 14:03:41 -08005481659fcb19093a2c511de469ad6ab94e32a7faConverts integers to logicals in two if conditionseditcomponents/eam/src/physics/cam/co2_data_flux.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90components/mpas-seaice/driver/ice_comp_mct.F19db8d3a4643309a19dc8a1c732b90fc92e9a4ef1607568673000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduBug fix in sea ice coupling file to use the same freezing temperature as in the main MPAS-SeaIce code according to the flag 'mushy', 'linear_salt' or the default -1.8 Celsius. 2020-12-09 19:51:13 -070019db8d3a4643309a19dc8a1c732b90fc92e9a4efBug fix in sea ice coupling file to use the same freezing temperature aseditcomponents/mpas-seaice/driver/ice_comp_mct.Fcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlfba6e6956faabd3a6281542307932ab689a2ee0e1607577380000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduSwitch on high-frequncy coupling in sea ice at 10 iterations This PR is part of a final set of changes to E3SM Version 2 polar changes, and matches a PR from MPAS-SeaIce recently accepted into E3SM Master. 2020-12-09 22:16:20 -0700fba6e6956faabd3a6281542307932ab689a2ee0eSwitch on high-frequncy coupling in sea ice at 10 iterationseditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/elm/src/data_types/ColumnDataType.F90components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/controlMod.F90components/elm/src/data_types/CNStateType.F90d8106565196246d97ac8d744427af6db14931c871607633886000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@pop-os.localdomainconflict resolution on cherry-pick 2020-12-10 15:58:06 -0500d8106565196246d97ac8d744427af6db14931c87conflict resolution on cherry-pickeditcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/dyn_subgrid/dynSubgridDriverMod.F90editcomponents/elm/src/main/controlMod.F90components/elm/src/main/clmfates_interfaceMod.F90components/elm/src/biogeophys/ActiveLayerMod.F903c87f83173e852da24f09cb7ad7f0f2efb169b4e1607634574000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@pop-os.localdomainresolved conflicts on cherry-pick 2020-12-10 16:09:34 -05003c87f83173e852da24f09cb7ad7f0f2efb169b4eresolved conflicts on cherry-pickeditcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/main/clmfates_interfaceMod.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmla3ac1daecfede287998ddd2caf3a593f77c3db3e1607660603000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govSupport for ne30np4pg2 in ELM - Adds mapping files for ne30np4pg2 - Adds surface dataset for ne30np4pg2 for 1850 and 2000 [BFB] 2020-12-10 20:23:23 -0800a3ac1daecfede287998ddd2caf3a593f77c3db3eSupport for ne30np4pg2 in ELMeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/stats_zt_module.F90remap/make_climo.pycomponents/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90components/cam/src/physics/clubb/stat_file_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/clubb/stats_zm_module.F90postprocessing/run_e3sm_diags.pycomponents/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/error_code.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/silhs/transform_to_pdf_module.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_type_utilities.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90remap/remap_ne30.cshcomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/output_grads.F90components/cam/src/physics/silhs/output_2D_samples_module.F90components/cam/src/physics/clubb/stats_sfc_module.F90d39431307708918feda15aaa250260b32ccbc6e91607716716000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit upgrades the version of CLUBB and SILHS found in Brian's NGD CLUBB-SILHS branch to version 80c85d3 of the CLUBB master. This commit does contain a couple of small changes not found in the CLUBB repo, including a bug fix that was not found in version 80c85d3 of CLUBB. This means that another version of the CLUBB master (that contains the bug fix being applied here) will need to be upgraded to in order to keep everything consistent between CLUBB and E3SM. 2020-12-11 13:58:36 -0600d39431307708918feda15aaa250260b32ccbc6e9This commit upgrades the version of CLUBB and SILHS found in Brian's NGDeditcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90editremap/make_climo.pyeditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/cam/src/physics/clubb/error_code.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/numerical_check.F90editcomponents/cam/src/physics/clubb/stat_file_module.F90editcomponents/cam/src/physics/clubb/stats_sfc_module.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90editpostprocessing/run_e3sm_diags.pyeditremap/remap_ne30.csheditcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/cam/src/physics/clubb/output_grads.F90editcomponents/cam/src/physics/clubb/stats_type_utilities.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/silhs/output_2D_samples_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/src/physics/clubb/stats_zt_module.F90editcomponents/cam/src/physics/clubb/advance_helper_module.F90editcomponents/cam/src/physics/silhs/transform_to_pdf_module.F90editcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/clubb/surface_varnce_module.F90components/elm/src/biogeochem/EcosystemDynMod.F90581c3e82f5f5beee61b859e1114e48eb4039cb7b1607720039000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comslightly modified logic on FATES and fixation 2020-12-11 15:53:59 -0500581c3e82f5f5beee61b859e1114e48eb4039cb7bslightly modified logic on FATES and fixationeditcomponents/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/biogeochem/AllocationMod.F90_newac6a6ce809dad22ed9767041c5a5947fb2deb58b1607721666000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govReverting to older and simplified version of allocation before attempting to merge with master. 2020-12-11 16:21:06 -0500ac6a6ce809dad22ed9767041c5a5947fb2deb58bReverting to older and simplified version of allocation before attempting to merge with master.editcomponents/elm/src/biogeochem/AllocationMod.F90addcomponents/elm/src/biogeochem/AllocationMod.F90_newcime_config/config_grids.xmlece3cac23eecf2e934f7e983ab59a888f40cced91607723376000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd grid support for the new ne30np4.pg2 ELM files 2020-12-11 15:49:36 -0600ece3cac23eecf2e934f7e983ab59a888f40cced9Add grid support for the new ne30np4.pg2 ELM fileseditcime_config/config_grids.xmlcomponents/homme/src/sweqx/sweq_mod.F90components/homme/src/test_mod.F90components/homme/src/sweqx/init_mod.F90components/homme/test_execs/theta-l-nlev300-native/CMakeLists.txtcomponents/homme/test_execs/preqx-nlev100-native/CMakeLists.txtcomponents/homme/src/share/physical_constants.F90components/homme/test_execs/theta-l-nlev20-native/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/sweqx-dbvor.cmakecomponents/homme/test_execs/theta-l-nlev128-native/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/thetanh-nhgw.cmakecomponents/homme/test/reg_test/run_tests/thetah-nhgw-slice.cmakecomponents/homme/test/reg_test/run_tests/thetah-nhgw.cmakecomponents/homme/src/test_src/dry_planar.F90components/homme/test_execs/preqx-nlev10-native/CMakeLists.txtcomponents/homme/src/share/parallel_mod.F90components/homme/src/share/dimensions_mod.F90components/homme/test/reg_test/namelists/thetanh-nhgw.nlcomponents/homme/src/sweqx/advance_mod.F90components/homme/test_execs/preqx-nlev20-native/CMakeLists.txtcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/planar_mesh_mod.F90components/homme/test_execs/theta-l-nlev256-native/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/preqx-nhgw-slice.cmakecomponents/homme/src/share/unit_tests_mod.F90components/homme/test/reg_test/namelists/preqx-nhgw.nlcomponents/homme/src/share/element_mod.F90components/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/homme/test_execs/theta-l-nlev30-native/CMakeLists.txtcomponents/homme/src/share/viscosity_base.F90components/homme/test_execs/swtcC/CMakeLists.txtcomponents/homme/test_execs/theta-l-nlev200-native/CMakeLists.txtcomponents/homme/src/sweqx/shallow_water_mod.F90components/homme/test_execs/preqx-nlev200-native/CMakeLists.txtcomponents/homme/src/share/cube_mod.F90components/homme/src/sweqx/viscosity_mod.F90components/homme/src/share/planar_mod.F90components/homme/test/reg_test/namelists/thetah-nhgw.nlcomponents/homme/test_execs/theta-l-nlev64-native/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/test-list.cmakecomponents/homme/src/sweqx/shal_movie_mod.F90components/homme/test_execs/theta-l-nlev140-native/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/preqx-nhgw.cmakecomponents/homme/src/share/namelist_mod.F90components/homme/src/share/geometry_mod.F90components/homme/src/prim_movie_mod.F90components/homme/test/reg_test/namelists/sweqx-dbvor.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlcomponents/homme/src/sweqx/CMakeLists.txtcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nlcomponents/homme/test/reg_test/run_tests/thetanh-nhgw-slice.cmakecomponents/homme/test_execs/theta-l-nlev150-native/CMakeLists.txtcomponents/homme/src/share/global_norms_mod.F90components/homme/test_execs/preqx-nlev140-native/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/src/share/derivative_mod_base.F90components/homme/test_execs/theta-l-nlev100-native/CMakeLists.txtcomponents/homme/test_execs/theta-l-nlev10-native/CMakeLists.txtcomponents/homme/src/share/spacecurve_mod.F90components/homme/test/reg_test/namelists/preqx-nhgw-slice.nlcomponents/homme/src/test_src/moist_planar.F90f8e218a1210db159454acf1a0653d6ccf61d4b4f1607726152000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govinitial start of whitespace fix 2020-12-11 15:35:52 -0700f8e218a1210db159454acf1a0653d6ccf61d4b4finitial start of whitespace fixaddcomponents/homme/test/reg_test/namelists/preqx-nhgw.nladdcomponents/homme/src/test_src/dry_planar.F90addcomponents/homme/test_execs/theta-l-nlev10-native/CMakeLists.txtaddcomponents/homme/src/share/planar_mesh_mod.F90addcomponents/homme/test_execs/theta-l-nlev64-native/CMakeLists.txtaddcomponents/homme/test/reg_test/run_tests/thetanh-nhgw-slice.cmakeeditcomponents/homme/src/sweqx/shallow_water_mod.F90editcomponents/homme/src/prim_movie_mod.F90addcomponents/homme/src/share/geometry_mod.F90addcomponents/homme/test_execs/preqx-nlev10-native/CMakeLists.txteditcomponents/homme/test/reg_test/run_tests/test-list.cmakeeditcomponents/homme/src/share/parallel_mod.F90addcomponents/homme/test_execs/theta-l-nlev300-native/CMakeLists.txteditcomponents/homme/src/share/cube_mod.F90addcomponents/homme/test/reg_test/run_tests/thetanh-nhgw.cmakeaddcomponents/homme/test_execs/theta-l-nlev140-native/CMakeLists.txteditcomponents/homme/src/share/spacecurve_mod.F90editcomponents/homme/src/sweqx/CMakeLists.txtaddcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nladdcomponents/homme/test_execs/swtcC/CMakeLists.txteditcomponents/homme/src/share/dimensions_mod.F90editcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/share/element_mod.F90addcomponents/homme/test/reg_test/run_tests/sweqx-dbvor.cmakeaddcomponents/homme/src/share/planar_mod.F90addcomponents/homme/test/reg_test/run_tests/preqx-nhgw-slice.cmakeeditcomponents/homme/test_execs/preqx-nlev20-native/CMakeLists.txteditcomponents/homme/src/sweqx/viscosity_mod.F90editcomponents/homme/src/sweqx/init_mod.F90addcomponents/homme/test/reg_test/run_tests/thetah-nhgw-slice.cmakeaddcomponents/homme/test_execs/theta-l-nlev150-native/CMakeLists.txteditcomponents/homme/src/share/global_norms_mod.F90editcomponents/homme/src/share/derivative_mod_base.F90editcomponents/homme/src/share/namelist_mod.F90editcomponents/homme/src/sweqx/shal_movie_mod.F90editcomponents/homme/src/share/physical_constants.F90editcomponents/homme/src/share/unit_tests_mod.F90addcomponents/homme/test/reg_test/run_tests/preqx-nhgw.cmakeaddcomponents/homme/test_execs/theta-l-nlev30-native/CMakeLists.txtaddcomponents/homme/test_execs/preqx-nlev200-native/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev100-native/CMakeLists.txtaddcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nladdcomponents/homme/test_execs/theta-l-nlev128-native/CMakeLists.txteditcomponents/homme/src/test_mod.F90editcomponents/homme/src/sweqx/sweq_mod.F90addcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nladdcomponents/homme/test_execs/theta-l-nlev200-native/CMakeLists.txtaddcomponents/homme/cmake/machineFiles/ubuntu1804.cmakeeditcomponents/homme/src/share/viscosity_base.F90addcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nladdcomponents/homme/src/test_src/moist_planar.F90addcomponents/homme/test/reg_test/run_tests/thetah-nhgw.cmakeaddcomponents/homme/test_execs/theta-l-nlev256-native/CMakeLists.txteditcomponents/homme/src/theta-l_kokkos/CMakeLists.txtaddcomponents/homme/test/reg_test/namelists/thetah-nhgw.nladdcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nladdcomponents/homme/test_execs/theta-l-nlev20-native/CMakeLists.txtaddcomponents/homme/test_execs/preqx-nlev100-native/CMakeLists.txtaddcomponents/homme/test_execs/preqx-nlev140-native/CMakeLists.txteditcomponents/homme/src/sweqx/advance_mod.F90editcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/src/common_movie_mod.F90components/homme/src/preqx_kokkos/CMakeLists.txt770ef7745a540a94b4817123e21436853145f0fd1607726816000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govdoes this work? 2020-12-11 15:46:56 -0700770ef7745a540a94b4817123e21436853145f0fddoes this work?editcomponents/homme/src/common_movie_mod.F90editcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/share/namelist_mod.F90components/homme/src/share/control_mod.F90components/homme/src/share/global_norms_mod.F90components/homme/src/share/cube_mod.F90components/homme/src/share/derivative_mod_base.F90e64b02d0f16367d4cbc7e0cbc69338871eacc7d71607727088000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govseems to work 2020-12-11 15:51:28 -0700e64b02d0f16367d4cbc7e0cbc69338871eacc7d7seems to workeditcomponents/homme/src/share/global_norms_mod.F90editcomponents/homme/src/share/namelist_mod.F90editcomponents/homme/src/share/control_mod.F90editcomponents/homme/src/share/cube_mod.F90editcomponents/homme/src/share/derivative_mod_base.F90components/homme/src/share/prim_driver_base.F90components/homme/src/share/unit_tests_mod.F90components/homme/src/share/viscosity_base.F90f39583db017a68570d0e88fb861817eb1dacae891607727477000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govalmost there 2020-12-11 15:57:57 -0700f39583db017a68570d0e88fb861817eb1dacae89almost thereeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/share/viscosity_base.F90editcomponents/homme/src/share/unit_tests_mod.F90components/homme/src/sweqx/init_mod.F90components/homme/src/sweqx/shallow_water_mod.F90components/homme/src/sweqx/sweq_mod.F90components/homme/src/sweqx/shal_movie_mod.F90347cf46aafe9262d4267e8beb0ee42bc531634711607728193000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govdone! 2020-12-11 16:09:53 -0700347cf46aafe9262d4267e8beb0ee42bc53163471done!editcomponents/homme/src/sweqx/sweq_mod.F90editcomponents/homme/src/sweqx/shallow_water_mod.F90editcomponents/homme/src/sweqx/shal_movie_mod.F90editcomponents/homme/src/sweqx/init_mod.F90components/elm/src/main/controlMod.F90ad17f8dcc3a23b986d98dd542adc8e5839fd056a1607728515000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfixed broadcast order of use_fates 2020-12-11 18:15:15 -0500ad17f8dcc3a23b986d98dd542adc8e5839fd056afixed broadcast order of use_fateseditcomponents/elm/src/main/controlMod.F90components/homme/src/share/global_norms_mod.F90components/homme/cmake/machineFiles/ubuntu1804.cmakef0c8e9b66621c1598462e2eb1fcfdc1d33dc07571607732133000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govfixes for global norms mod and C++/Kokkos 2020-12-11 17:15:33 -0700f0c8e9b66621c1598462e2eb1fcfdc1d33dc0757fixes for global norms mod and C++/Kokkoseditcomponents/homme/cmake/machineFiles/ubuntu1804.cmakeeditcomponents/homme/src/share/global_norms_mod.F90components/homme/src/sweqx/shal_movie_mod.F90dd00407ef1bcc55ef26c7580a790e1973697b77e1607732425000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govshallow water fix 2020-12-11 17:20:25 -0700dd00407ef1bcc55ef26c7580a790e1973697b77eshallow water fixeditcomponents/homme/src/sweqx/shal_movie_mod.F90cime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmlfe27b5b6111b54061ca153be968504fbe9aba4ff1607734323000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd GNU modules 2020-12-11 18:52:03 -0600fe27b5b6111b54061ca153be968504fbe9aba4ffAdd GNU moduleseditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/elm/src/external_models/fates684e4f3cf7367e89a26293c974aa211ce95b61021607743009000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfates api 14 2020-12-11 19:16:49 -0800684e4f3cf7367e89a26293c974aa211ce95b6102fates api 14editcomponents/elm/src/external_models/fatescomponents/cam/src/physics/clubb/stats_zt_module.F90components/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/advance_xp3_module.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90f4a319aaaf393f4ddb939d230ca9be115e4fbdb41607834650000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB-SILHS found in UWM's NGD E3SM-CLUBB-SILHS code to CLUBB-SILHS master version f926963, dated December 10, 2020. Now raise a glass of MGD to toast our NGD! 2020-12-12 22:44:10 -0600f4a319aaaf393f4ddb939d230ca9be115e4fbdb4I updated the version of CLUBB-SILHS found in UWM's NGD E3SM-CLUBB-SILHSeditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/stats_zt_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/advance_xp3_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/clubb/stats_zm_module.F90components/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txt21efa330b0ede486898ccc6e1011f288c7169af91607840883000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing _kokkos builds 2020-12-13 00:28:03 -060021efa330b0ede486898ccc6e1011f288c7169af9fixing _kokkos buildseditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90editcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90fe242f0dfc183e18a97fb4970c6c1c875b81439b1607895650000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes compute wetdens logic 2020-12-13 13:40:50 -0800fe242f0dfc183e18a97fb4970c6c1c875b81439bFixes compute wetdens logiceditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90cime9e8524c7e020fc049e192ccfb333250a532f213f1607977670000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdvance cime to include GPTL process id update 2020-12-14 14:27:50 -06009e8524c7e020fc049e192ccfb333250a532f213fAdvance cime to include GPTL process id updateeditcimecime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmlcime_config/machines/config_batch.xml7dff30487883a8009e8e9001daedf185f46d66351607982373000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRename LCRC paths from acme to e3sm and clean up 2020-12-14 15:46:13 -06007dff30487883a8009e8e9001daedf185f46d6635Rename LCRC paths from acme to e3sm and clean upeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmleditcime_config/machines/config_batch.xmlcomponents/elm/src/main/elm_driver.F906ec4c6f601efb7cad25a654ee23c3ffe8c80e3211607994759000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates cnp, minor fix to fire and n/p dep interpolations. 2020-12-14 20:12:39 -05006ec4c6f601efb7cad25a654ee23c3ffe8c80e321fates cnp, minor fix to fire and n/p dep interpolations.editcomponents/elm/src/main/elm_driver.F90cime_config/tests.pycomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elmfates_interfaceMod.F9049dda922a83ce4812465f895376255c79053cd371608046790000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comFATES API 14 fixes 2020-12-15 07:39:50 -080049dda922a83ce4812465f895376255c79053cd37FATES API 14 fixeseditcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcime_config/tests.pyeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90components/mpas-sourceec73814a252351648a2ba9f6b7aeff7151d22a151608049191000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Add diagnostics module for GPU performance 2020-12-15 09:19:51 -0700ec73814a252351648a2ba9f6b7aeff7151d22a15update mpas-source: Add diagnostics module for GPU performanceeditcomponents/mpas-sourcecomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/test_execs/thetal_kokkos_ut/hv_interface.F90components/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90components/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/homme/cmake/machineFiles/ubuntu1804-bfb.cmakea51d996f97295f4c7e60d8beffe24fa7e997977f1608057834000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govUnit testing fixes? 2020-12-15 11:43:54 -0700a51d996f97295f4c7e60d8beffe24fa7e997977fUnit testing fixes?editcomponents/homme/test_execs/thetal_kokkos_ut/hv_interface.F90addcomponents/homme/cmake/machineFiles/ubuntu1804-bfb.cmakeeditcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90editcomponents/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90editcomponents/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/crm_output_module.F90components/eam/bld/configurecomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_input_module.F90components/eam/src/physics/crm/physpkg.F904e25446633d39c178e66349ee73583ea96021bb71608063305000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCleaned up Convective Variance Transport This implements the bulk variance transport from the prototype branch without most of the experimental modifications. Only the fortran verison is implemented here to act as a baseline for the C++ porting. modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_input_module.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/physpkg.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 new file: components/eam/src/physics/crm/sam/crm_variance_transport.F90 2020-12-15 15:15:05 -05004e25446633d39c178e66349ee73583ea96021bb7Cleaned up Convective Variance Transporteditcomponents/eam/src/physics/crm/crm_input_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/bld/configureaddcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/post_timeloop.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/bld/configurecomponents/eam/src/physics/crm/samxx/timeloop.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.hea32e1f70128b313de3d231ebfadee45c4c2d6ca1608063306000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comInitial C++ port of CVT also includes bug fixes for fortran CVT. C++ port has a bug that is causing a seg fault. modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp new file: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp new file: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.h modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.h modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.h modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-15 15:15:06 -0500ea32e1f70128b313de3d231ebfadee45c4c2d6caInitial C++ port of CVTeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.heditcomponents/eam/bld/configureaddcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.heditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/src/physics/crm/samxx/crm.cppaddcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/timeloop.heditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cpp31d48cb0cde5b876707e7eb47e62d86ea12ec9061608063306000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comC++ VT bug fixes modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-15 15:15:06 -050031d48cb0cde5b876707e7eb47e62d86ea12ec906C++ VT bug fixeseditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90cime_config/machines/config_machines.xml1f11795ab9a05557ea352749f5e1c43bc631ca341608063307000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comVT Bug fix and summit config adjustment for PGI modified: cime_config/machines/config_machines.xml modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 2020-12-15 15:15:07 -05001f11795ab9a05557ea352749f5e1c43bc631ca34VT Bug fix and summit config adjustment for PGIeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcime_config/machines/config_machines.xmlcomponents/elm/src/data_types/CNStateType.F904ef7ddfdd52ca94a060aa16b9b3541172ecd9f8d1608146963000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comFATES coupling, temporarily disabling SOIL_ORDER read-ins when fates is on, due to lack of data in the 4x5 surfacefile. 2020-12-16 11:29:23 -08004ef7ddfdd52ca94a060aa16b9b3541172ecd9f8dFATES coupling, temporarily disabling SOIL_ORDER read-ins when fates is on, due to lack of data in the 4x5 surfacefile.editcomponents/elm/src/data_types/CNStateType.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/lnd2atmMod.F90d6dc5527649b92bf01a36c7b3888fa1e97cc58e21608152245000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfates api 14 cnp p1, nee coupling fix and comments fix 2020-12-16 12:57:25 -0800d6dc5527649b92bf01a36c7b3888fa1e97cc58e2fates api 14 cnp p1, nee coupling fix and comments fixeditcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp525b2e757f4a7d683ee44b4d9143ea65b976df5a1608162354000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMinor VT updates modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-16 18:45:54 -0500525b2e757f4a7d683ee44b4d9143ea65b976df5aMinor VT updateseditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/elm/src/main/elmfates_interfaceMod.F90440d503bc9b8d3bacff966c0de029cbfdc2411aa1608163600000http://carson.math.uwm.edu/jenkins/user/glemieuxglemieuxglemieux@users.noreply.github.compass moisture and temp scalars from ColumnDataType to FATES 2020-12-16 16:06:40 -0800440d503bc9b8d3bacff966c0de029cbfdc2411aapass moisture and temp scalars from ColumnDataType to FATESeditcomponents/elm/src/main/elmfates_interfaceMod.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/bld/configurecomponents/eam/src/physics/crm/crm_input_module.F90cc7013dbf29d57d3af83c9b43f0bd65fe464650b1608163618000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comChange MMF variance transport naming convention modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_input_module.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-16 19:06:58 -0500cc7013dbf29d57d3af83c9b43f0bd65fe464650bChange MMF variance transport naming conventioneditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/bld/configureeditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/src/physics/crm/crm_input_module.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90externals/scorpio1b25a4195f60e931b3426814d3fa0e49b5d99c4d1608219518000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio v1.1.5 This release includes, * Fix for truncated strings written out using pio_put_var * Performance improvements for the ADIOS conversion tool * Fix for asserts in debug builds when non-NULL starts/counts are used for writing out scalar variables 2020-12-17 09:38:38 -06001b25a4195f60e931b3426814d3fa0e49b5d99c4dUpdating to Scorpio v1.1.5editexternals/scorpiocime_config/tests.pyc15f7fb2622ec7a69019afd8f4d29bdab8da74f51608220789000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfixed a typo in the fates test list 2020-12-17 07:59:49 -0800c15f7fb2622ec7a69019afd8f4d29bdab8da74f5fixed a typo in the fates test listeditcime_config/tests.pycomponents/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90remap/make_climo.pyrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp3_module.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90remap/remap_ne30.cshcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90postprocessing/run_e3sm_diags.pycomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90components/cam/src/physics/clubb/version_clubb_core.txt2eaa4c2f75223aa9c5e47bd66bd605313f7fbca41608223332000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB-SILHS in the NGD E3SM-CLUBB-SILHS branch to CLUBB-SILHS version a62f284 (from the CLUBB master), dated December 16, 2020. 2020-12-17 10:42:12 -06002eaa4c2f75223aa9c5e47bd66bd605313f7fbca4I updated the version of CLUBB-SILHS in the NGD E3SM-CLUBB-SILHSeditcomponents/cam/src/physics/silhs/version_silhs.txteditrun_silhs_anvil_gust.csheditremap/remap_ne30.csheditcomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90editpostprocessing/run_e3sm_diags.pyeditcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/advance_xp3_module.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/clubb/stats_zm_module.F90editremap/make_climo.pycomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/sam/setperturb.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/setperturb.cpp689661c9ba320fd39d7b7c833e9e2a9e5ad2b0ac1608230123000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix PRNG for setperturb in SAM++ modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/sam/setperturb.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2020-12-17 13:35:23 -0500689661c9ba320fd39d7b7c833e9e2a9e5ad2b0acFix PRNG for setperturb in SAM++editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/sam/setperturb.F90editcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/setperturb.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/mpas-source5424db3057378b0b965037ac3c5eb51cda2698871608235165000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: update seaice with ocean surface temperature bug fix 2020-12-17 13:59:25 -06005424db3057378b0b965037ac3c5eb51cda269887Update mpas-source: update seaice with ocean surface temperature bug fixeditcomponents/mpas-source.circleci/run.sh.circleci/config.yml.circleci/checkout.sh.circleci/setup.shbcb54a3ad81923eeb29205ef582b780fff7e59911608242455000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduAdd Circle CI test 2020-12-17 16:00:55 -0600bcb54a3ad81923eeb29205ef582b780fff7e5991Add Circle CI testadd.circleci/config.ymladd.circleci/checkout.shadd.circleci/run.shadd.circleci/setup.shcomponents/eam/src/physics/crm/samxx/pre_timeloop.cpp481fbd4fb6264bdb27142d0f136a301e3381dacf1608250890000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comBug fix for crashing SAM++ VT cases modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-17 19:21:30 -0500481fbd4fb6264bdb27142d0f136a301e3381dacfBug fix for crashing SAM++ VT caseseditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F9025aa4621213c8c4736f8144feef60efe27a7c1851608251006000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd history variables for large-scale VT forcing modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-17 19:23:26 -050025aa4621213c8c4736f8144feef60efe27a7c185Add history variables for large-scale VT forcingeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90c005131ee0c948513b4b973e7d23ca97ff6d59631608276506000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfix for gnu compiler 2020-12-18 01:28:26 -0600c005131ee0c948513b4b973e7d23ca97ff6d5963fix for gnu compilereditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime_config/allactive/config_pesall.xmld79b90e0435d0ca62c0203dd090a786b4a7492301608316048000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd pelayouts for e3sm_prod WC case 2020-12-18 12:27:28 -0600d79b90e0435d0ca62c0203dd090a786b4a749230Add pelayouts for e3sm_prod WC caseeditcime_config/allactive/config_pesall.xmlcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F9084b599fe4eacebaec876e2ce67bad5a29f24a2ed1608418569000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes a threading issue 2020-12-19 16:56:09 -060084b599fe4eacebaec876e2ce67bad5a29f24a2edFixes a threading issueeditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F900fa5439b0f8b27f865813092cfd8cc9fc02f503a1608429442000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comMinor cleanup 2020-12-19 19:57:22 -06000fa5439b0f8b27f865813092cfd8cc9fc02f503aMinor cleanupeditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime_config/machines/Depends.compy.pgi.cmake9fe252957a0adbb6829ae7b7fcb4b0b66c9631681608497278000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comChange optimizations of modal_aero_calcsize.F90 to -O1 for Compy's PGI In prepration for the PR which refactors calcsize, modal_aero_calcsize.F90 needs to be compiled with level 1 optimizations (-O1). This applies only to the PGI compiler. GNU and Intel work fine with the default optimizations. Further investigations show that if we use just the "-nofma" flag (no "fused multiply and add" optimization), the results stay BFB. "-O1" optimizations implies "-nofma", so compiling with -O1 is also sufficient for maintaing BFB answers with the PGI compiler. [Non-BFB] for compy's PGI compiler only 2020-12-20 12:47:58 -08009fe252957a0adbb6829ae7b7fcb4b0b66c963168Change optimizations of modal_aero_calcsize.F90 to -O1 for Compy's PGIeditcime_config/machines/Depends.compy.pgi.cmakecime_config/machines/config_machines.xml70e2cfef12dc300f280a852e3f06aa35606d1e7b1608580274000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govReplace module removes with module swaps on Theta 2020-12-21 19:51:14 +000070e2cfef12dc300f280a852e3f06aa35606d1e7bReplace module removes with module swaps on Thetaeditcime_config/machines/config_machines.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml9faea849b4c3a7f9fe108ea3c76a4839952ef4de1608580939000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comChanges ocean defaults to be consistent with WC v2 2020-12-21 14:02:19 -06009faea849b4c3a7f9fe108ea3c76a4839952ef4deChanges ocean defaults to be consistent with WC v2editcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml0e73978ce9db7d6fe9cf2dd02e17d5fb09d0c3291608581009000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comenables MOC am 2020-12-21 14:03:29 -06000e73978ce9db7d6fe9cf2dd02e17d5fb09d0c329enables MOC ameditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/machines/config_machines.xml0ce1e8e5896ed0045931d19ef947649e91c1cfb51608596847000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate paths and module loads on Theta 2020-12-22 00:27:27 +00000ce1e8e5896ed0045931d19ef947649e91c1cfb5Update paths and module loads on Thetaeditcime_config/machines/config_machines.xmlcomponents/mpas-sourcefb489d8fe051158656398fc02dae7fc581331b8e1608647800000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Fix bug with high freq coupling in MPAS-Seaice 2020-12-22 08:36:40 -0600fb489d8fe051158656398fc02dae7fc581331b8eUpdate mpas-source: Fix bug with high freq coupling in MPAS-Seaiceeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmle912b38cd5e3e8388cf56eebed5e47c73d6231731608649132000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates hgrid for 0.125x0.125 Replaces 0.125x0.125 with r0125xr0125 Fixes #3782 [BFB] 2020-12-22 06:58:52 -0800e912b38cd5e3e8388cf56eebed5e47c73d623173Updates hgrid for 0.125x0.125editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp07a7a6cf050305068c138960bab8289cda26cd301608650270000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd C++ FFT filter routine for VT modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h 2020-12-22 10:17:50 -050007a7a6cf050305068c138960bab8289cda26cd30Add C++ FFT filter routine for VTeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/test_fft/clean_build.shcomponents/eam/src/physics/crm/test_fft/README.mdcomponents/eam/src/physics/crm/test_fft/cmakescript.shcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft/CMakeLists.txtf25604931f4cc7e2fa11d2051d5d5e15880467191608651386000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd code for sanity checking YAKL FFT new file: components/eam/src/physics/crm/test_fft/CMakeLists.txt new file: components/eam/src/physics/crm/test_fft/README.md new file: components/eam/src/physics/crm/test_fft/clean_build.sh new file: components/eam/src/physics/crm/test_fft/cmakescript.sh new file: components/eam/src/physics/crm/test_fft/test_fft_yakl.cpp new file: components/eam/src/physics/crm/test_fft/test_fft_yakl.h 2020-12-22 10:36:26 -0500f25604931f4cc7e2fa11d2051d5d5e1588046719Add code for sanity checking YAKL FFTaddcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppaddcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.haddcomponents/eam/src/physics/crm/test_fft/cmakescript.shaddcomponents/eam/src/physics/crm/test_fft/clean_build.shaddcomponents/eam/src/physics/crm/test_fft/README.mdaddcomponents/eam/src/physics/crm/test_fft/CMakeLists.txtcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shcomponents/eam/src/physics/crm/test_fft/clean_build.shcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft/README.mdcomponents/eam/src/physics/crm/sam/fftpack5_1d.F90components/eam/src/physics/crm/test_fft/CMakeLists.txtcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90components/eam/src/physics/crm/test_fft/cmakescript.shcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtcomponents/eam/src/physics/crm/test_fft_cpp/README.md229fbf58c46cb388967ac1042ff24d9ed9b40c5d1608653593000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdded fortran FFT sanity check code modified: components/eam/src/physics/crm/sam/fftpack5_1d.F90 renamed: components/eam/src/physics/crm/test_fft/CMakeLists.txt -> components/eam/src/physics/crm/test_fft_cpp/CMakeLists.txt renamed: components/eam/src/physics/crm/test_fft/README.md -> components/eam/src/physics/crm/test_fft_cpp/README.md renamed: components/eam/src/physics/crm/test_fft/clean_build.sh -> components/eam/src/physics/crm/test_fft_cpp/clean_build.sh renamed: components/eam/src/physics/crm/test_fft/cmakescript.sh -> components/eam/src/physics/crm/test_fft_cpp/cmakescript.sh renamed: components/eam/src/physics/crm/test_fft/test_fft_yakl.cpp -> components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp renamed: components/eam/src/physics/crm/test_fft/test_fft_yakl.h -> components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.h new file: components/eam/src/physics/crm/test_fft_fortran/README.md new file: components/eam/src/physics/crm/test_fft_fortran/test_fft.F90 2020-12-22 11:13:13 -0500229fbf58c46cb388967ac1042ff24d9ed9b40c5dAdded fortran FFT sanity check codeaddcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppdeletecomponents/eam/src/physics/crm/test_fft/CMakeLists.txtaddcomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shaddcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90addcomponents/eam/src/physics/crm/test_fft_fortran/README.mdaddcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shdeletecomponents/eam/src/physics/crm/test_fft/README.mdaddcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.haddcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtdeletecomponents/eam/src/physics/crm/test_fft/cmakescript.shdeletecomponents/eam/src/physics/crm/test_fft/clean_build.shaddcomponents/eam/src/physics/crm/test_fft_cpp/README.mddeletecomponents/eam/src/physics/crm/test_fft/test_fft_yakl.heditcomponents/eam/src/physics/crm/sam/fftpack5_1d.F90deletecomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp9dcfc803e7c25a5ca30f5806abfba70b7ea3227b1608654849000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMinor clean up modified: components/eam/src/physics/crm/test_fft_cpp/README.md modified: components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp modified: components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.h modified: components/eam/src/physics/crm/test_fft_fortran/README.md 2020-12-22 11:34:09 -05009dcfc803e7c25a5ca30f5806abfba70b7ea3227bMinor clean upeditcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppeditcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.heditcomponents/eam/src/physics/crm/test_fft_fortran/README.mdeditcomponents/eam/src/physics/crm/test_fft_cpp/README.mdcomponents/mpas-source858df4fc55949213577b8a5a9cb6d8b1cb473a5a1608669702000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Updated sea ice emissivity 2020-12-22 14:41:42 -0600858df4fc55949213577b8a5a9cb6d8b1cb473a5aUpdate mpas-source: Updated sea ice emissivityeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xml85922d5ad5e96429f64dc86522541f6882c5fd661608678889000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd ne4 pelayout on Chrysalis 2020-12-22 17:14:49 -060085922d5ad5e96429f64dc86522541f6882c5fd66Add ne4 pelayout on Chrysaliseditcime_config/allactive/config_pesall.xmlcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/homme/cmake/machineFiles/mira.cmakecomponents/homme/cmake/machineFiles/cetus.cmakecomponents/homme/cmake/machineFiles/chrysalis.cmake5dc1891d2fe3900f00317c6b74ff872fd7a664171608679439000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd HOMME machine file for Chrysalis 2020-12-22 17:23:59 -06005dc1891d2fe3900f00317c6b74ff872fd7a66417Add HOMME machine file for Chrysalisdeletecomponents/homme/cmake/machineFiles/mira.cmakeaddcomponents/homme/cmake/machineFiles/chrysalis.cmakeaddcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakedeletecomponents/homme/cmake/machineFiles/cetus.cmakecomponents/elm/src/main/elm_driver.F90fd9289c53be3a186f34fa6895f331bdf19507c1e1608743696000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfixed fates logic for decomp_verprofiles() call 2020-12-23 12:14:56 -0500fd9289c53be3a186f34fa6895f331bdf19507c1efixed fates logic for decomp_verprofiles() calleditcomponents/elm/src/main/elm_driver.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F903693093bbbd04330f8dac8a11a16bf5c0955d9a61608744049000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates: updated logic during capacitance-based phosphatase dynamics to move logical filters outside of loops (for performance). 2020-12-23 12:20:49 -05003693093bbbd04330f8dac8a11a16bf5c0955d9a6fates: updated logic during capacitance-based phosphatase dynamics to move logical filters outside of loops (for performance).editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/EcosystemDynMod.F90cc2795391495f0f8aa8ea11c10026770da9825fa1608744358000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govChanged name of call ZeroUpscaled to ZeroForFates 2020-12-23 12:25:58 -0500cc2795391495f0f8aa8ea11c10026770da9825faChanged name of call ZeroUpscaled to ZeroForFateseditcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/controlMod.F90ada32084783188919c0205e9140d7b1e6061c8851608744604000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govremoved obsolete print statement 2020-12-23 12:30:04 -0500ada32084783188919c0205e9140d7b1e6061c885removed obsolete print statementeditcomponents/elm/src/main/controlMod.F90cime_config/machines/config_machines.xml7977494a065f8358e95d44ca24ed141c9c8f40fa1608748496000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govReplace netcdf versions with versions used on Anvil 2020-12-23 12:34:56 -06007977494a065f8358e95d44ca24ed141c9c8f40faReplace netcdf versions with versions used on Anvileditcime_config/machines/config_machines.xmlcomponents/elm/src/main/elm_driver.F90c0a9487ae37fcc3f8f174b56671fb8248a027b261608750937000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdated name of zero-ing of column level datastructures when fates is on 2020-12-23 14:15:37 -0500c0a9487ae37fcc3f8f174b56671fb8248a027b26updated name of zero-ing of column level datastructures when fates is oneditcomponents/elm/src/main/elm_driver.F90components/elm/src/biogeochem/AllocationMod.F90_new4d1ef5867b5a5d01bcc04a9bc479c388ac2000c91608751475000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govremoved temporary file AllocationMod.F90_new 2020-12-23 14:24:35 -05004d1ef5867b5a5d01bcc04a9bc479c388ac2000c9removed temporary file AllocationMod.F90_newdeletecomponents/elm/src/biogeochem/AllocationMod.F90_newcomponents/elm/src/external_models/fates1002ed2dd175310ff41d0aa1fcc79e244673565f1608751849000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdating fates submodule pointer to tag sci.1.43.2_api.14.2.0 2020-12-23 14:30:49 -05001002ed2dd175310ff41d0aa1fcc79e244673565fupdating fates submodule pointer to tag sci.1.43.2_api.14.2.0editcomponents/elm/src/external_models/fatescomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xml064aa03e3d423df7652f59e8207eaacd2191d8531608754898000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduRemoval of high-frequency coupling for V2 default sea ice coupling 2020-12-23 13:21:38 -0700064aa03e3d423df7652f59e8207eaacd2191d853Removal of high-frequency coupling for V2 default sea ice couplingeditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml36fb22f08febfc226d811fc1d6efa6bda7b371a61608758215000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.commakes parameter changes valid for EC30to60E2r2 only 2020-12-23 15:16:55 -060036fb22f08febfc226d811fc1d6efa6bda7b371a6makes parameter changes valid for EC30to60E2r2 onlyeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml1fcac4075a92f64f5d406a4eb2ad021b22ba29531608759701000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd IntelMPI modules on Chrysalis 2020-12-23 15:41:41 -06001fcac4075a92f64f5d406a4eb2ad021b22ba2953Add IntelMPI modules on Chrysaliseditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/src/share/geometry_mod.F90cc3e85e4b9b0db66a09819dc63ed3ad4a5e0e2d01608850921000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing unit tests and minor formatting 2020-12-24 17:02:01 -0600cc3e85e4b9b0db66a09819dc63ed3ad4a5e0e2d0fixing unit tests and minor formattingeditcomponents/homme/src/share/geometry_mod.F90editcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90f76a67d2156969a0fd0484c3840f17c38119ee171608855156000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comclean up 2020-12-24 18:12:36 -0600f76a67d2156969a0fd0484c3840f17c38119ee17clean upeditcomponents/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90components/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcime_config/allactive/config_compsets.xml74778938d8b246dc2c96c14f8ec824a0eb3ea9a01608869210000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd new compsets and atm use_case files for v2 Add new compsets along with default atmos namelist parameters for most used configurations for v2 finalization. The default atmos parameter values are based on v2alpha5_59 simulation. The new compsets are F2010SC5v2-CMIP6, F20TRC5v2-CMIP6 and A_WCYCL1850Sv2_CMIP6 [BFB] 2020-12-24 20:06:50 -080074778938d8b246dc2c96c14f8ec824a0eb3ea9a0Add new compsets and atm use_case files for v2addcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmladdcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcime_config/allactive/config_compsets.xmleditcomponents/eam/cime_config/config_compsets.xmladdcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmleditcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmld1dcd81155c9732cf720c3c61fe3f5782853724b1608871274000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCorrect closing tag for some clubb params in use_case files. 2020-12-24 20:41:14 -0800d1dcd81155c9732cf720c3c61fe3f5782853724bCorrect closing tag for some clubb params in use_case files.editcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlda1467212e72d8ec5711e28a0fbfce79bf41fdc21608916094000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd v2 setting for missing micro_mg_accre_enhan_fac 2020-12-25 09:08:14 -0800da1467212e72d8ec5711e28a0fbfce79bf41fdc2Add v2 setting for missing micro_mg_accre_enhan_faceditcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xml0a71d66c69465b512bdb26ca91cc3d00e79305211608925889000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govSet default atmos parameters for v2 in existing compsets Set default atmos parameter values for the following three compsets that are used for v2 finalization simulations based on alpha5_59 A_WCYCL1850S_CMIP6, F20TRC5-CMIP6 and F2010SC5-CMIP6 [NBFB] non-BFB for simulations using these compsets 2020-12-25 11:51:29 -08000a71d66c69465b512bdb26ca91cc3d00e7930521Set default atmos parameters for v2 in existing compsetseditcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmlcomponents/elm/cime_config/config_component.xml4d08440157cbb49f88778472c85cc67b3bbc22b11609041255000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govUpdate elm config_component to set proper use case for new compsets 2020-12-26 19:54:15 -08004d08440157cbb49f88778472c85cc67b3bbc22b1Update elm config_component to set proper use case for new compsetseditcomponents/elm/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp1601093fce9a61d63cfb314b01ed32680bb03ff51609267828000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix CPP variable for filtered VT modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp 2020-12-29 10:50:28 -08001601093fce9a61d63cfb314b01ed32680bb03ff5Fix CPP variable for filtered VTeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F905254af6d7860881cee3a82af1a5dac10293b25b01609273048000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comUsing pointers to avoid unnecessary copies of data [BFB] - Bit-For-Bit 2020-12-29 12:17:28 -08005254af6d7860881cee3a82af1a5dac10293b25b0Using pointers to avoid unnecessary copies of dataeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime8acad83687bece1125a0305e950c2a413d10bc971609285404000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comAdd support for chrysalis to provenance.py Created a new CIME branch (worleyph/chrysalis_support) with a modified provenance.py that adds the chrysalis system to the list of supported systems. The CIME branch also (a) removes support for mira and titan systems, and (b) fixes archiving of batch job output files for slurm systems anvil, compy, cori-haswell, and cori-knl. [BFB] 2020-12-29 17:43:24 -06008acad83687bece1125a0305e950c2a413d10bc97Add support for chrysalis to provenance.pyeditcimecime_config/machines/syslog.chrysalis3cda98707a228d1caed48e2bc3dc2232bf6c031c1609288307000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comAdd job monitoring script for chrysalis Added syslog.chrysalis, to provide job progress monitoring and checkpointing for the chrysalis system. [BFB] - Bit-For-Bit 2020-12-29 18:31:47 -06003cda98707a228d1caed48e2bc3dc2232bf6c031cAdd job monitoring script for chrysalisaddcime_config/machines/syslog.chrysaliscomponents/homme/src/share/prim_driver_base.F90a20f833f159dd38166fc0eea06c9a8868403d3301609779030000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govtime level fix for SCM 2021-01-04 08:50:30 -0800a20f833f159dd38166fc0eea06c9a8868403d330time level fix for SCMeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F90f582b00723e8426addc6ce27c0ff83e90fad6c471609780120000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz380.llnl.govfix spacing issues 2021-01-04 09:08:40 -0800f582b00723e8426addc6ce27c0ff83e90fad6c47fix spacing issueseditcomponents/homme/src/share/prim_driver_base.F90cime_config/machines/config_machines.xml64b8e8b602228ac04ef50b534807332136ed89c41609802609000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comChange default location for SAVE_TIMING_DIR on Chrysalis Currently, jobs on Anvil and Chrysalis archive performance data in the same location. This may cause errors if Jenkins jobs, one on Anvil and one on Chrysalis, attempt to access these performance data simultaneously. To avoid this possibility, the default location for archiving performance data, specified in SAVE_TIMING_DIR, is changed for Chrysalis. [BFB] 2021-01-04 17:23:29 -060064b8e8b602228ac04ef50b534807332136ed89c4Change default location for SAVE_TIMING_DIR on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/mpas-source6306cfd91ac89837c6ca2f134f5c0d51a469be5a1609878301000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Updated sea ice for algal grazing bug 2021-01-05 14:25:01 -06006306cfd91ac89837c6ca2f134f5c0d51a469be5aUpdate mpas-source: Updated sea ice for algal grazing bugeditcomponents/mpas-sourcecomponents/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/histFileMod.F90f4ea6e14bf33d00b73d001ed81d869ed802668ca1609880368000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comminor bug fixes bring fates api to 14.2 2021-01-05 12:59:28 -0800f4ea6e14bf33d00b73d001ed81d869ed802668caminor bug fixes bring fates api to 14.2editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/main/histFileMod.F90cime_config/machines/config_machines.xmlf9b117c02907d8b59772eea332b6023129a972fb1609885334000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRemove I_MPI_ADJUST_ALLREDUCE=1 on Chrysalis And make pnetcdf version same as on Anvil 2021-01-05 16:22:14 -0600f9b117c02907d8b59772eea332b6023129a972fbRemove I_MPI_ADJUST_ALLREDUCE=1 on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/mpas-source1f7a2690880ce84290940586797a17ccb2700d0f1609892158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am trying to re-add the links to the externals that were in conflict during the previous master merge. They should be the links as they are found in the master branch. 2021-01-05 18:15:58 -06001f7a2690880ce84290940586797a17ccb2700d0fI am trying to re-add the links to the externals that were in conflict duringeditcomponents/mpas-sourcecimeexternals/kokkosexternals/scorpio54cfed1be6f5592ad0d27831652213a0c53b81451609892633000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTrying to revert the remainder of these merge-conflicted externals to the version found in the master. 2021-01-05 18:23:53 -060054cfed1be6f5592ad0d27831652213a0c53b8145Trying to revert the remainder of these merge-conflicted externals to theaddexternals/scorpioaddcimeaddexternals/kokkosexternals/YAKLb165c950dc2d3a6c78aeb55c745bbc02f7772f751609892828000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding externals/YAKL to the list 2021-01-05 18:27:08 -0600b165c950dc2d3a6c78aeb55c745bbc02f7772f75Adding externals/YAKL to the listaddexternals/YAKLcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90components/eam/src/physics/crm/test_fft_cpp/clean_build.shcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txt4c8c2c1e21c85067cdfdf7d656ec7d25fde5fb751609965854000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove FFT test scripts 2021-01-06 13:44:14 -07004c8c2c1e21c85067cdfdf7d656ec7d25fde5fb75Remove FFT test scriptsdeletecomponents/eam/src/physics/crm/test_fft_fortran/README.mddeletecomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90deletecomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shdeletecomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppdeletecomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shdeletecomponents/eam/src/physics/crm/test_fft_cpp/README.mddeletecomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hdeletecomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/bld/build-namelist3f5fe889dbd0fc4633049ecfecb5e9a1e72fc7a31609971152000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove ifdefs for MMF variance transport modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2021-01-06 15:12:32 -07003f5fe889dbd0fc4633049ecfecb5e9a1e72fc7a3Remove ifdefs for MMF variance transporteditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/bld/build-namelistf6a6ea4a80b05f55b65a69cb862e55cc8ebd83461609977996000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comVT namelist change modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2021-01-06 17:06:36 -0700f6a6ea4a80b05f55b65a69cb862e55cc8ebd8346VT namelist changeeditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/bld/build-namelisteditcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/bld/configure28f25afcf384c09acc8241bc177483d1ffc86ee41610052242000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govVT bug fix in configure modified: components/eam/bld/configure 2021-01-07 12:44:02 -080028f25afcf384c09acc8241bc177483d1ffc86ee4VT bug fix in configureeditcomponents/eam/bld/configurecomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/silhs/latin_hypercube_arrays.F90run_e3sm_scm_DYCOMSrf02.cshcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90components/eam/src/physics/silhs/generate_uniform_sample_module.F90components/eam/src/physics/silhs/math_utilities.F90cime_config/machines/config_compilers.xmlREPLAY/run_e3sm_anvil_gust.cshnightly_test/nightly_e3sm_scm_RICO.cshrun_e3sm_scm_BOMEX.cshrun_silhs_anvil_gust.cshrun_e3sm_scm_RICO.cshnightly_test/nightly_e3sm_scm_BOMEX.cshrun_e3sm_scm_ARM_shallow.cshcomponents/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/silhs/parameters_silhs.F90run_e3sm_scm_REPLAY.cshcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90run_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90components/eam/src/physics/silhs/transform_to_pdf_module.F90tau_clean_anvil.cshcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F9059648e41aa329daa78692274049621b7d1453ebe1610067520000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making this commit to fix the recent merge of the E3SM master branch into this branch. This includes re-adding the silhs/ directory and all SILHS files that were accidentally removed during the merge commit. 2021-01-07 18:58:40 -060059648e41aa329daa78692274049621b7d1453ebeI am making this commit to fix the recent merge of the E3SM master branch intoedittau_clean_anvil.csheditcime_config/machines/config_compilers.xmleditnightly_test/nightly_e3sm_scm_BOMEX.cshaddcomponents/eam/src/physics/silhs/latin_hypercube_arrays.F90addcomponents/eam/src/physics/silhs/silhs_api_module.F90addcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90editrun_e3sm_scm_DYCOMSrf02.cshaddcomponents/eam/src/physics/silhs/output_2D_samples_module.F90addcomponents/eam/src/physics/silhs/version_silhs.txtaddcomponents/eam/src/physics/silhs/parameters_silhs.F90editcomponents/eam/src/physics/cam/clubb_intr.F90addcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90addcomponents/eam/src/physics/silhs/transform_to_pdf_module.F90addcomponents/eam/src/physics/silhs/math_utilities.F90editREPLAY/run_e3sm_anvil_gust.csheditrun_e3sm_scm_BOMEX.cshaddcomponents/eam/src/physics/silhs/generate_uniform_sample_module.F90editnightly_test/nightly_e3sm_scm_RICO.csheditrun_e3sm_scm_ARM_shallow.csheditrun_e3sm_scm_DYCOMSrf01.cshaddcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90editnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshaddcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F90editrun_silhs_anvil_gust.csheditrun_e3sm_scm_RICO.csheditrun_e3sm_scm_REPLAY.cshcomponents/eam/src/physics/cam/clubb_intr.F9016c876658d24dfc67e362284355e125cd3ea85841610083868000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving a duplicate print statement for all CLUBB tunable parameters. 2021-01-07 23:31:08 -060016c876658d24dfc67e362284355e125cd3ea8584Removing a duplicate print statement for all CLUBB tunable parameters.editcomponents/eam/src/physics/cam/clubb_intr.F90components/homme/src/share/prim_driver_base.F9030845ddfcacf7c48fec6086ec233d15f84016fee1610126212000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz2306.llnl.govupdate comments 2021-01-08 09:16:52 -080030845ddfcacf7c48fec6086ec233d15f84016feeupdate commentseditcomponents/homme/src/share/prim_driver_base.F90components/homme/test/reg_test/namelists/thetah-nhgw.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nlcomponents/homme/test/reg_test/namelists/preqx-nhgw.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nlee6feea017b1f346458f316317b46f0459c073631610127773000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govfix planar test directories 2021-01-08 10:42:53 -0700ee6feea017b1f346458f316317b46f0459c07363fix planar test directorieseditcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nleditcomponents/homme/test/reg_test/namelists/thetah-nhgw.nleditcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nleditcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nleditcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nleditcomponents/homme/test/reg_test/namelists/preqx-nhgw.nleditcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlremap/make_climo.pypostprocessing/run_e3sm_diags.pyremap/function_cal_mean.pyrun_silhs_anvil_gust.cshremap/remap_ne30.cshremap/remap.cshremap/remap_ne30_3h.cshremap/remap_3h.cshbe4dfdb890bf85230155920824c0c666724b8aa41610133110000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made changes necessary for postprocessing the updated output files, where "eam" has replaced "cam" in the file names. 2021-01-08 13:11:50 -0600be4dfdb890bf85230155920824c0c666724b8aa4I made changes necessary for postprocessing the updated output files, whereeditremap/remap.csheditremap/remap_ne30.csheditpostprocessing/run_e3sm_diags.pyeditremap/remap_3h.csheditrun_silhs_anvil_gust.csheditremap/function_cal_mean.pyeditremap/remap_ne30_3h.csheditremap/make_climo.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/function_pick_out.py29dc13ba784cf2c86a796f4a8e9820c3930ac6821610134959000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the E3SM-CLUBB plot files to account for the file naming convention change from .cam. to .eam. 2021-01-08 13:42:39 -060029dc13ba784cf2c86a796f4a8e9820c3930ac682Changing the E3SM-CLUBB plot files to account for the file naming conventioneditdiagnostic_v2_0/function_pick_out.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/setperturb.cppcomponents/eam/src/physics/crm/crm_output_module.F90df57eba531fa565c73caf03df14012d156a035361610149005000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2021-01-08 18:36:45 -0500df57eba531fa565c73caf03df14012d156a03536Address PR commentseditcomponents/eam/src/physics/crm/samxx/setperturb.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/mpas-source52280eab6d3213621037bfe84352f0990e8d851f1610385527000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govWiden halo for Redi hmix computation 2021-01-11 09:18:47 -080052280eab6d3213621037bfe84352f0990e8d851fWiden halo for Redi hmix computationeditcomponents/mpas-sourcecomponents/eam/src/physics/crm/crm_physics.F906f7ea3fb35f8133f692a69d740fb7b7153b10bc41610391122000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govVT bug fix modified: components/eam/src/physics/crm/crm_physics.F90 2021-01-11 10:52:02 -08006f7ea3fb35f8133f692a69d740fb7b7153b10bc4VT bug fixeditcomponents/eam/src/physics/crm/crm_physics.F90cime899fa2cc8fa7681fd718ffcf70fcce954eac30dc1610392219000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule Updating to lastest CIME master: cc2fa1c8581c3e5aff5e9aa095f6fcb1cf19969d Changes: 1) Add a useful check to wait_for_tests to catch when TestStatus file is corrupted 2) Add a mask to seq_io_write_avscomp 3) NML gen: Facilitate adding defaults for a namelist group conditionally. 4) MCT: Add memory usage logging 5) SCREAM: Add some missing SCREAM config dirs 6) cime standalone testing: allow nuopc to skip some tests 7) PIO2: Update PIO2 to latest version and add testing support for PIO async tests 8) Makefile: Remove unused logic Bug fixes: 1) Fixes an issue in cpl hist avg files that caused the time variable not to be written correctly in pio2 2) Fix cleanup in scripts_regression_tests 3) PIO2: Seq io fix pio2, Don't rely on pio to do data conversions 4) env_batch.xml: need to get queue from case, not batch object 5) Need srun_binding to be an int, not float [BFB] 2021-01-11 12:10:19 -0700899fa2cc8fa7681fd718ffcf70fcce954eac30dcUpdate CIME submoduleeditcimecomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcime_config/allactive/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmlcomponents/eam/bld/build-namelist2c3aa23c11ad4650bc9070173f189f9e16808a0b1610394302000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename default v2 compsets and use_case files 2021-01-11 11:45:02 -08002c3aa23c11ad4650bc9070173f189f9e16808a0bRename default v2 compsets and use_case filesaddcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmladdcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmladdcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmleditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_component.xmleditcime_config/allactive/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcimef604e17ddbd18e10769f359e89b6cc7ea4a2c2a91610407525000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govSet back the CIME commit to avoid PIO issues 2021-01-11 16:25:25 -0700f604e17ddbd18e10769f359e89b6cc7ea4a2c2a9Set back the CIME commit to avoid PIO issueseditcimecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01a.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-02.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-03.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01a.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-03.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-01.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01b.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01b.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-02.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01b.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-00.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-01.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-01.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-00.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-03.xml3622da32e5902704f89e1e595841fe8a1092692c1610426854000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govClean up av1c/f series of compsets except *AV1C-L and FC5AV1C-H01A for nightly tests 2021-01-11 20:47:34 -08003622da32e5902704f89e1e595841fe8a1092692cClean up av1c/f series of compsets except *AV1C-L and FC5AV1C-H01A for nightly testsdeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-02.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01b.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01b.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-02.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01c.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01a.xmleditcomponents/eam/cime_config/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-00.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01b.xmleditcomponents/eam/cime_config/config_component.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01c.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01a.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-00.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/config_files/definition.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/build-namelistcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmldbba34f9733b861f1f410f31a3fc662beb9c03d41610467387000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename namelist_defaults_cam.xml to namelist_defaults_eam.xml 2021-01-12 08:03:07 -0800dbba34f9733b861f1f410f31a3fc662beb9c03d4Rename namelist_defaults_cam.xml to namelist_defaults_eam.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/build-namelistdeletecomponents/eam/bld/namelist_files/namelist_defaults_cam.xmladdcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/eam/bld/config_files/definition.xmlcimea6d130f5e48ea59ec38c32abd869ce21090dfc7e1610484177000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAdd chrysalis prov 2021-01-12 13:42:57 -0700a6d130f5e48ea59ec38c32abd869ce21090dfc7eAdd chrysalis proveditcimecomponents/homme/src/share/compose/compose_cedr.cpp7d86312b9b156602eca72d8cf6b3f5b3db33fac51610488474000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, SL: Add typedef to make SL transport run in a GPU build. SL transport currently runs only on the host, but one execution space was set to the device space. 2021-01-12 13:54:34 -08007d86312b9b156602eca72d8cf6b3f5b3db33fac5Homme, SL: Add typedef to make SL transport run in a GPU build.editcomponents/homme/src/share/compose/compose_cedr.cppcomponents/homme/src/share/control_mod.F90components/eam/bld/namelist_files/namelist_definition.xml082e68f2c402256274e77587e4b86135fbeffddd1610498905000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, EAM: More details for dt_remap_factor and dt_tracer_factor. Add additional output in the timesteps checking routine for one case. Add additional details to the XML descriptions for dt_tracer_factor and dt_remap_factor. 2021-01-12 16:48:25 -0800082e68f2c402256274e77587e4b86135fbeffdddHomme, EAM: More details for dt_remap_factor and dt_tracer_factor.editcomponents/homme/src/share/control_mod.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelist8d1cce3a053daf9e7d8edba35058aa539cdee20e1610562751000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.gov Add new semi-implicit namelist groups to ocean namelist 2021-01-13 10:32:31 -08008d1cce3a053daf9e7d8edba35058aa539cdee20eAdd new semi-implicit namelist groups to ocean namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-group-listeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist9a9ffaad07e4cebb7555c36e25b4a58396a2de051610562759000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate ocean build-namelist with new namelists for semi-implicit 2021-01-13 10:32:39 -08009a9ffaad07e4cebb7555c36e25b4a58396a2de05Update ocean build-namelist with new namelists for semi-impliciteditcomponents/mpas-ocean/bld/build-namelistcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist8039bbf44182a06a53bdc836ccf191f93900e9e91610562767000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd bfb thread mode for semi-implicit 2021-01-13 10:32:47 -08008039bbf44182a06a53bdc836ccf191f93900e9e9Add bfb thread mode for semi-impliciteditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist842c1db8d6bea474447cd744964d48db0220ac081610562776000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate flag name 2021-01-13 10:32:56 -0800842c1db8d6bea474447cd744964d48db0220ac08Update flag nameeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-source8c637c259a1c254f108b16301169bc52dd7d7b121610562858000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source 2021-01-13 10:34:18 -08008c637c259a1c254f108b16301169bc52dd7d7b12Update mpas-sourceeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml00d80d3011378e564a0ea13952c74366105147e81610562933000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds support for NA RRM grid on ELM - Adds northamericax4v1pg2 as a valid resolution - Adds mapping files needed to create surface datasets at northamericax4v1pg2 - Adds surface dataset for 1850 and 2010 2021-01-13 10:35:33 -080000d80d3011378e564a0ea13952c74366105147e8Adds support for NA RRM grid on ELMeditcomponents/elm/bld/namelist_files/namelist_definition.xmleditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml0bf34380371155b1a0f90a22b55b6485d58fae051610567748000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfix enax and twpx runs 2021-01-13 13:55:48 -06000bf34380371155b1a0f90a22b55b6485d58fae05fix enax and twpx runseditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xml6921b670bb4b31352089d0dcd87f02476a37aa341610583328000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-o namelist definitions with output from automated scripts 2021-01-13 18:15:28 -06006921b670bb4b31352089d0dcd87f02476a37aa34Update mpas-o namelist definitions with output from automated scriptseditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-source8e0fdf4205cfd0b414432dec859da0e1d701dcfe1610746541000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: cosine bell test case 2021-01-15 13:35:41 -08008e0fdf4205cfd0b414432dec859da0e1d701dcfeupdate mpas-source: cosine bell test caseeditcomponents/mpas-sourcecomponents/mpas-source3e2a11af1cd9f18676548a2df1bc5b40d7584e5c1611093034000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: Port ocean velocity to GPU 2021-01-19 13:50:34 -08003e2a11af1cd9f18676548a2df1bc5b40d7584e5cUpdate mpas-source: Port ocean velocity to GPUeditcomponents/mpas-sourcecime_config/machines/Depends.cray.cmakecime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml4ecf7f6bae6109df68aec1cfe3aad140583754eb1611095586000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable Cray compiler on Theta 2021-01-19 22:33:06 +00004ecf7f6bae6109df68aec1cfe3aad140583754ebEnable Cray compiler on Thetaeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmleditcime_config/machines/Depends.cray.cmakecime_config/machines/config_compilers.xmldde38a6d40a826e0c3006a5ae8000e9979aef8791611095817000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUse ceiling for number of job nodes 2021-01-19 22:36:57 +0000dde38a6d40a826e0c3006a5ae8000e9979aef879Use ceiling for number of job nodeseditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmla46a7155be9d88ac2d58c8ea057a994e103a560a1611096161000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate modules 2021-01-19 22:42:41 +0000a46a7155be9d88ac2d58c8ea057a994e103a560aUpdate moduleseditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmc85fdafe6ef3538bd3ea013369ad5ae0afa0933c1611096325000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd cray compiler to ChemPreprocess.pm 2021-01-19 22:45:25 +0000c85fdafe6ef3538bd3ea013369ad5ae0afa0933cAdd cray compiler to ChemPreprocess.pmeditcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmcimecime_config/machines/Depends.cray.cmakecime_config/machines/config_machines.xml806361e87be397678be26a7af29e6e209299efa81611102090000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate Cray compiler to cce/10.0.3 on Theta 2021-01-20 00:21:30 +0000806361e87be397678be26a7af29e6e209299efa8Update Cray compiler to cce/10.0.3 on Thetaeditcimeeditcime_config/machines/Depends.cray.cmakeeditcime_config/machines/config_machines.xmlcime_config/machines/config_machines.xmlae4e98ec8f03f60a53c318289fe36c839ef799231611106606000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRemove darshan for Cray compiler on Theta 2021-01-20 01:36:46 +0000ae4e98ec8f03f60a53c318289fe36c839ef79923Remove darshan for Cray compiler on Thetaeditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/zm_conv.F90c91bf8fd946b03d90919fc7012f0fc33ea248b3f1611125072000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes a NBFB issue when clubb_use_sgv and zmconv_tp_fac are used The model produces NBFB answers when run with phys_loadbalance =0 and phys_loadbalance=2 with the following settings in atm_in: clubb_use_sgv = .true. zmconv_tp_fac = 2.0D0 The reason is that the "tpert" variable is used in zm_convr subroutine directly without collecting the "gathered" columns of "tpert". To fix this, a new variable "tpertg" is declared which has the "gathered" columns of "tpert". "tpertg" is being used instead of "tpert" for cloud properties calculations. 2021-01-19 22:44:32 -0800c91bf8fd946b03d90919fc7012f0fc33ea248b3fFixes a NBFB issue when clubb_use_sgv and zmconv_tp_fac are usededitcomponents/eam/src/physics/cam/zm_conv.F90cime_config/config_grids.xmlef9b2edd849ce08a4729d8b1b6b4ad67eb7328d31611247050000http://carson.math.uwm.edu/jenkins/user/tang30tang30tang30@llnl.govAdd grid definition and maps for bi-grid NA RRM 2021-01-21 08:37:30 -0800ef9b2edd849ce08a4729d8b1b6b4ad67eb7328d3Add grid definition and maps for bi-grid NA RRMeditcime_config/config_grids.xmlcomponents/mpas-sourcefc4a1b262a7a364c64772189f46a707d7fba6e2d1611262525000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govmpas clean-up: remove compass/ocean, add doc template 2021-01-21 12:55:25 -0800fc4a1b262a7a364c64772189f46a707d7fba6e2dmpas clean-up: remove compass/ocean, add doc templateeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml90a7a88a2a2f1f098f89557bd80a6d8b8c1861ca1611263018000http://carson.math.uwm.edu/jenkins/user/tang30tang30tang30@llnl.govAdds support for NA RRM grid on ELM - Adds northamericax4v1pg2 as a valid resolution - Adds mapping files needed to create surface datasets at northamericax4v1pg2 - Adds surface dataset for 1850 and 2010 (cherry picked from commit 00d80d3011378e564a0ea13952c74366105147e8) 2021-01-21 13:03:38 -080090a7a88a2a2f1f098f89557bd80a6d8b8c1861caAdds support for NA RRM grid on ELMeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcime_config/machines/config_machines.xml50e9c8dbbc695eb5f2bb8172ff4ff1940071357b1611264838000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd gnu modules for intel-mpi on Chrysalis 2021-01-21 15:33:58 -060050e9c8dbbc695eb5f2bb8172ff4ff1940071357bAdd gnu modules for intel-mpi on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml9b91c5a5dd614434a028f72cf0d51466c2ab32721611272787000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the name of surface data files 2021-01-21 15:46:27 -08009b91c5a5dd614434a028f72cf0d51466c2ab3272Updates the name of surface data fileseditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xmlde45b4d06e3d54539a4b47dac35c164870a13de01611275174000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the hgrid names 2021-01-21 16:26:14 -0800de45b4d06e3d54539a4b47dac35c164870a13de0Updates the hgrid nameseditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml1493273817b4419174e45a4ca474983b4a5eeece1611276324000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govMore changes due to renmaing of hgrid 2021-01-21 16:45:24 -08001493273817b4419174e45a4ca474983b4a5eeeceMore changes due to renmaing of hgrideditcomponents/elm/bld/namelist_files/namelist_definition.xmleditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/ChangeLogcomponents/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/silhs/parameters_silhs.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/stats_variables.F903686274c140d6ed6d10d9a4267fb9cae5950c63e1611304148000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS in the latest E3SMv2 NGD branch to version f2dc5c2 from January 21, 2021. That's right ... the first update from the great post-Trump years! 2021-01-22 02:29:08 -06003686274c140d6ed6d10d9a4267fb9cae5950c63eI updated the version of CLUBB and SILHS in the latest E3SMv2 NGDeditcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/silhs/parameters_silhs.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90deletecomponents/eam/src/physics/clubb/ChangeLogeditcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.csh3b85f7b642121dd5d4e709cf10949c9802214b411611337459000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitted some E3SM-sided updates to work with the new version of CLUBB-SILHS. 2021-01-22 11:44:19 -06003b85f7b642121dd5d4e709cf10949c9802214b41Committed some E3SM-sided updates to work with the new version of CLUBB-SILHS.editrun_silhs_anvil_gust.csheditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/clubb_intr.F90cime_config/machines/config_machines.xmlf13091df87fc6b2ffbd8049628ffe76c5b60d3471611357741000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable test runs on compute nodes on Chrysalis 2021-01-22 17:22:21 -0600f13091df87fc6b2ffbd8049628ffe76c5b60d347Enable test runs on compute nodes on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/homme/cmake/machineFiles/chrysalis.cmakecomponents/homme/cmake/machineFiles/chrysalis-bfb.cmake98b385804d7ab2718a8852a4dc3316c5e0d7d9fc1611364712000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate HOMME cmake files on Chrysalis 2021-01-22 19:18:32 -060098b385804d7ab2718a8852a4dc3316c5e0d7d9fcUpdate HOMME cmake files on Chrysaliseditcomponents/homme/cmake/machineFiles/chrysalis.cmakeeditcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/eam/src/physics/cam/vertical_diffusion.F9097ba4e619e3a5e19343b43404527b44b141948a71611365140000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comReverted accidently modified vertical_diffusion.F90 file 2021-01-22 17:25:40 -080097ba4e619e3a5e19343b43404527b44b141948a7Reverted accidently modified vertical_diffusion.F90 fileeditcomponents/eam/src/physics/cam/vertical_diffusion.F90components/eam/src/physics/cam/zm_conv.F90cime_config/tests.py87975ca0a5b0557fecb8e7551a90c8548278e22b1611371130000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix uninitialized pblt600 and replace a remaining FC5AV1C-04P2 test Uninitialized pblt600 could be used when dCCAPE_ULL is used and surface pressure of the column is above 6000 hPa. It would impact how convective adjustment is performed, which could lead to instability. It is now initialized to 1. Also replace a remaining test that uses the now non-existent compset FC5AV1C-04P2 with FC5AV1C-L. The test name changes but the results will not. [BFB] except with dCAPE_ULL trigger -- as for v2 default setting -- on some systems 2021-01-22 19:05:30 -080087975ca0a5b0557fecb8e7551a90c8548278e22bFix uninitialized pblt600 and replace a remaining FC5AV1C-04P2 testeditcime_config/tests.pyeditcomponents/eam/src/physics/cam/zm_conv.F90components/homme/src/tool/tool_main.F90components/homme/src/interpolate_driver_mod.F90components/homme/src/share/interpolate_mod.F90e94f79b82d08f9bb79da53a86f1305bc78fd61fd1611424895000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orghomme_tool fixes for interpolating NE1024 data fix integer overflow in inputfile PIO decomp skip requiested variables that are not in the input file skip 2D string varaiables (not working in pio_copy_var ) add ability to thread the interpolating setup loop. Then we can save in I/O time by running fewer MPI tasks. 2021-01-23 10:01:35 -0800e94f79b82d08f9bb79da53a86f1305bc78fd61fdhomme_tool fixes for interpolating NE1024 dataeditcomponents/homme/src/tool/tool_main.F90editcomponents/homme/src/interpolate_driver_mod.F90editcomponents/homme/src/share/interpolate_mod.F90components/homme/src/interpolate_driver_mod.F905b1c0fa3ac99e528747cb618e1eb0e40997166631611446144000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgfix index bug 2021-01-23 15:55:44 -08005b1c0fa3ac99e528747cb618e1eb0e4099716663fix index bugeditcomponents/homme/src/interpolate_driver_mod.F90components/homme/test/tool/cori.joba14c8e0dbce3624b9d41d89528717856d3a9520c1611446467000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgupdate cori.job script to use threads 2021-01-23 16:01:07 -0800a14c8e0dbce3624b9d41d89528717856d3a9520cupdate cori.job script to use threadseditcomponents/homme/test/tool/cori.jobcomponents/eam/src/physics/silhs/parameters_silhs.F90components/eam/src/physics/silhs/silhs_api_module.F90decf67bbc9cee45cbe790eae6466c264370f57c71611610922000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFurther updates to CLUBB, which will be "made official" later. 2021-01-25 15:42:02 -0600decf67bbc9cee45cbe790eae6466c264370f57c7Further updates to CLUBB, which will be "made official" later.editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/silhs/parameters_silhs.F90run_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/subcol_SILHS.F90387863cf01965fb81cd783f854b02fd31fec1ccb1611612882000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added subcol_SILHS_vert_decorr_coef to the namelist. 2021-01-25 16:14:42 -0600387863cf01965fb81cd783f854b02fd31fec1ccbI added subcol_SILHS_vert_decorr_coef to the namelist.editrun_silhs_anvil_gust.csheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/bld/namelist_files/namelist_definition.xml89aa66fa39b048b9bd649d4a56ff07552331c16a1611613363000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added subcol_SILHS_vert_decorr_coef to namelist_definition.xml. 2021-01-25 16:22:43 -060089aa66fa39b048b9bd649d4a56ff07552331c16aI added subcol_SILHS_vert_decorr_coef to namelist_definition.xml.editcomponents/eam/bld/namelist_files/namelist_definition.xmlcime_config/machines/config_machines.xmla9b193f3fd4b5ddde910857ab6fbe9483852d1921611617343000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd procs-per-node option to intel-mpi mpirun on Chrysalis 2021-01-25 17:29:03 -0600a9b193f3fd4b5ddde910857ab6fbe9483852d192Add procs-per-node option to intel-mpi mpirun on Chrysaliseditcime_config/machines/config_machines.xmlcime_config/machines/config_machines.xml185a76baa1669dcdc11855e819683565ed3c78f81611684304000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate mappy to gcc-8.1.0 to match summit 2021-01-26 11:05:04 -0700185a76baa1669dcdc11855e819683565ed3c78f8Update mappy to gcc-8.1.0 to match summiteditcime_config/machines/config_machines.xmlcomponents/mpas-sourcea0d080b775a60db45f2a9f9ed1e7426c825823fd1611695363000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed seaice column message threading bug 2021-01-26 15:09:23 -0600a0d080b775a60db45f2a9f9ed1e7426c825823fdUpdate mpas-source: fixed seaice column message threading bugeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/namelist_definition.xmlrun_silhs_anvil_gust.csh351c49a679ff24b779a1f9c97d2058f01acefd251611695409000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduModifying E3SM to work with the latest version of CLUBB-SILHS. 2021-01-26 15:10:09 -0600351c49a679ff24b779a1f9c97d2058f01acefd25Modifying E3SM to work with the latest version of CLUBB-SILHS.editcomponents/eam/src/physics/cam/clubb_intr.F90editrun_silhs_anvil_gust.csheditcomponents/eam/bld/namelist_files/namelist_definition.xmlrun_silhs_anvil_gust.csh7e4352682c75f4e2e7cbc93a22480f22675c63f21611695634000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding clubb_C_invrs_tau_wpxp_Ri and clubb_C_invrs_tau_wpxp_N2_thresh entrees to the namelist for backwards compatibility. 2021-01-26 15:13:54 -06007e4352682c75f4e2e7cbc93a22480f22675c63f2Adding clubb_C_invrs_tau_wpxp_Ri and clubb_C_invrs_tau_wpxp_N2_thresheditrun_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/zm_conv_intr.F90components/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmlcomponents/eam/bld/configurecomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/bld/config_files/definition.xmlcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmlcomponents/eam/src/chemistry/aerosol/wetdep.F90components/eam/bld/build-namelist4f3768077b2bb13745755db05d45f3ea82c6a3871611700411000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govConsolidate v2 atm parameter values into a common default file Optimized atm parameter values for v2 were initially set in run script, then migrated to use case files for corresponding compsets. This PR further consolidates the common settings among the v2 compsets into namelist_defaults_eam.xml from use case files. This PR also renames physics package name used for v2 during configuration and runtime to 'default'. [NBFB] Tests using active atm component likely will be NBFB as many of the new default parameter values incorporated from use case files have not yet been used in the nightly test cases. 2021-01-26 14:33:31 -08004f3768077b2bb13745755db05d45f3ea82c6a387Consolidate v2 atm parameter values into a common default fileeditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/configureeditcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmleditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmleditcomponents/eam/bld/build-namelisteditcomponents/eam/src/chemistry/aerosol/wetdep.F90editcomponents/eam/src/physics/cam/zm_conv_intr.F90editcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcime_config/machines/config_machines.xml32b8d9193c150a5ae1cb9d71c0f17e6348d9f4df1611700428000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRun intel-mpi with slurm srun on Chrysalis 2021-01-26 16:33:48 -060032b8d9193c150a5ae1cb9d71c0f17e6348d9f4dfRun intel-mpi with slurm srun on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/version_clubb_core.txt8e9829aaf60e948acab38c316cf35eee372dbbf31611700626000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am officially upgrading the version of CLUBB and SILHS used in E3SM to version c689c7e from January 25, 2021. 2021-01-26 16:37:06 -06008e9829aaf60e948acab38c316cf35eee372dbbf3I am officially upgrading the version of CLUBB and SILHS used in E3SM toeditcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/version_clubb_core.txtrun_silhs_anvil_gust.csh62393ed1e01c4c9a02ebd7bf38a8e97e3daa460c1611700864000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAltered the git commit hash in the run script to reflect the updated version of CLUBB-SILHS in the code. 2021-01-26 16:41:04 -060062393ed1e01c4c9a02ebd7bf38a8e97e3daa460cAltered the git commit hash in the run script to reflect the updatededitrun_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/clubb_intr.F908a2d4eb4869961610039ce8737232ddb80677d351611701168000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduResetting clubb_debug_level from 3 to 2 allows us to get rid of the level 3 debug print statemements without needing to comment items out of the code. 2021-01-26 16:46:08 -06008a2d4eb4869961610039ce8737232ddb80677d35Resetting clubb_debug_level from 3 to 2 allows us to get rid of theeditcomponents/eam/src/physics/cam/clubb_intr.F90cime_config/tests.pycime_config/testmods_dirs/allactive/v2_wcprod/shell_commandscime_config/testmods_dirs/allactive/v2_wcprod/READMEcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassicime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplaf41e5be173a6098891eea13e08165298563afbd1611707429000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds test SMS.northamericax4v1pg2_WC14to60E2r3_ICG.A_WCYCL1850S_CMIP6 The test mods are in cime_config/testmods_dirs/allactive/v2_wcprod *********1*********2*********3*********4*********5*********6*********7** Longer commit message body describing the commit. Can contain lists as follows: * Item 1 * Item 2 * Item 3 A good commit message should be written like an email, a subject followed by a blank line, followed by a more descriptive body. Can also contain a tag at the bottom describing what type of commit this is. [BFB] - Bit-For-Bit [FCC] - Flag Climate Changing [Non-BFB] - Non Bit-For-Bit [CC] - Climate Changing [NML] - Namelist Changing See confluence for a more detailed description about these tags. 2021-01-26 16:30:29 -0800af41e5be173a6098891eea13e08165298563afbdAdds test SMS.northamericax4v1pg2_WC14to60E2r3_ICG.A_WCYCL1850S_CMIP6addcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassiaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosarteditcime_config/tests.pyaddcime_config/testmods_dirs/allactive/v2_wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasoaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cpladdcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamaddcime_config/testmods_dirs/allactive/v2_wcprod/READMEcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/homme/cmake/machineFiles/chrysalis.cmake0e5bfc64172553e65573787f44a7b8e676a8b6ef1611709950000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govSimplify and use srun for homme on Chrysalis 2021-01-26 19:12:30 -06000e5bfc64172553e65573787f44a7b8e676a8b6efSimplify and use srun for homme on Chrysaliseditcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakeeditcomponents/homme/cmake/machineFiles/chrysalis.cmakeexternals/scorpioexternals/scorpio_classic0bd41d0052f1f5690f8dd4bfea42468b150d5ede1611717727000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio ver 1.1.6 Updating to Scorpio version 1.1.6. Scorpio classic is also updated to version 1.1.6 This release includes, * A new asynchronous I/O interface required for compatibility with PIO2 and CIME * Performance improvements for the ADIOS conversion tool 2021-01-26 21:22:07 -06000bd41d0052f1f5690f8dd4bfea42468b150d5edeUpdating to Scorpio ver 1.1.6editexternals/scorpio_classiceditexternals/scorpiocimebf6e57f16a9c2588816a63f52601d0a0733254751611754066000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comFix calc. for max. number of levels when using noI8 and update comments Created a new CIME branch (worleyph/reprosum_i4_fix) with a modified shr_reprosum_mod.F90 that fixes an error when building with the CPP token noI8 defined (not currently used in E3SM) and adds comments to clarify logic in the code, as follows. i) Fix calculation for maximum number of levels when using noI8 When using 4-byte integers instead of 8-byte integers in shr_reprosum_mod.F90 (by defining the CPP token 'noI8' when compiling), certain 8-byte (real*8) reals are not being represented as a vector of integers exactly. We determined that this is because not enough integers are being used to represent the value, introducing an error in the sum by truncating the least significant bits for these values. We traced the error to the calculation of the maximum number of integers needed to represent each of the real*8 summands. The current logic is 2 + ((digits(0_i8) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) for 8-byte integers, and 2 + ((digits(0_i4) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) for 4-byte integers. The error is that in both we should be using the number of significant digits in the 8-byte real value, digits(0.0_r8), instead of the number of digits in the integer representation. The fix is to replace the above by 2 + ((digits(0.0_r8) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) When using 8-byte integers, digits(0_i8) is greater than digits(0.0_r8), so no error is incurred in the original logic. However, digits(0_i4) is less than digits(0.0_r8), resulting in occasional errors when using 4-byte integers. As the modified logic correctly calculates the maximum number of integers needed to represent each real*8 summand, changing from digits(0_i8) to digits(0.0_r8) does not change the results of shr_reprosum_mod.F90 calculations when using 8-byte integers. This modification will, however, eliminate the potential loss of accuracy when using 4-byte integers, and could change the resulting sums. Both statements have been verified in empirical studies, both standalone and in E3SM using a range of mesh resolutions and both F and fully coupled cases. ii) Add comment to explain logic in shr_reprosum_mod.F90 The logic for defining the maximum number of summands max_nsummands = (max_nsummands/omp_nthreads) + 1 max_nsummands = max(max_nsummands, tasks*omp_nthreads) is not obvious. max_nsummands is used to determine an upper bound on how many more bits an integer sum can require compared to the individual summands, and this is used to determine how to partition the real*8 summands and the intermediate sums into vectors of integers. The reason that the maximum is taken in the second step instead of a sum is that the integer vector representing the local sum (per thread) is postprocessed in shr_reprosum_int to reduce the number of bits for each integer to be no more than the assumed maximum for the original integer summands. The sum over the threads and processes is then applied to this modified vector. Therefore, the two sets of sums can be treated separately, and only the maximum used. Comments to this effect are added to the source code. iii) Clarify and correct comments in shr_reprosum.F90 Comments in the shr_reprosum_mod.F90 claim that "The algorithm will calculate the number of levels that is required for the sum to be essentially exact." Here another comment is added to be more precise about what is being claimed, as follows. "(The sum as represented by the integer expansion will be exact, but roundoff may perturb the least significant digit of the returned real*8 representation of the sum.)" Also, legacy references to "mean" are replaced by "sum" in two locations. Marking this BFB as we do not currently define the noI8 CPP token on our target systems. [BFB] 2021-01-27 08:27:46 -0500bf6e57f16a9c2588816a63f52601d0a073325475Fix calc. for max. number of levels when using noI8 and update commentseditcimecime_config/machines/config_machines.xml8920cc86daf7736cfe3d67cf9a2ff863cbd01ddd1611784288000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate mappy serial env [BFB] 2021-01-27 14:51:28 -07008920cc86daf7736cfe3d67cf9a2ff863cbd01dddUpdate mappy serial enveditcime_config/machines/config_machines.xmlremap/make_climo.pydiagnostic_v2_0/E3SM_CLUBB_diag.pypostprocessing/run_e3sm_diags.pycomponents/eam/src/physics/cam/clubb_intr.F90remap/remap_ne30.cshf3199472aaabc1a588fa4a6c4eaea4ed3f2e537e1611797962000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing TTEND_CLUBB back to STEND_CLUBB for use in output statistics. 2021-01-27 19:39:22 -0600f3199472aaabc1a588fa4a6c4eaea4ed3f2e537eI am changing TTEND_CLUBB back to STEND_CLUBB for use in output statistics.editremap/make_climo.pyeditcomponents/eam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditpostprocessing/run_e3sm_diags.pyeditremap/remap_ne30.cshcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcime_config/tests.pycime_config/testmods_dirs/allactive/v2_wcprod/shell_commandsb3c47241b88fe7b3820a2835c90c27fe8afa6da31611801251000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comSome mods to the test, shell commands and the use case files 2021-01-27 18:34:11 -0800b3c47241b88fe7b3820a2835c90c27fe8afa6da3Some mods to the test, shell commands and the use case fileseditcime_config/tests.pyeditcime_config/testmods_dirs/allactive/v2_wcprod/shell_commandseditcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassicime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplf591c2bae1316d87fc69fcd6bf9800a22ca335921611817060000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved some unused user_nl* files 2021-01-27 22:57:40 -0800f591c2bae1316d87fc69fcd6bf9800a22ca33592Removed some unused user_nl* filesdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassieditcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mpasocime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/testmods_dirs/allactive/v2_wcprod/shell_commandscime_config/tests.pycime_config/testmods_dirs/allactive/v2_wcprod/READMEcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamcime_config/testmods_dirs/allactive/wcprodrrm/READMEcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eam006fc1651663546c5e1ccf2ce5f75c2f81aa0b6c1611857392000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comChanges test name to remove "v2" 2021-01-28 10:09:52 -0800006fc1651663546c5e1ccf2ce5f75c2f81aa0b6cChanges test name to remove "v2"addcime_config/testmods_dirs/allactive/wcprodrrm/READMEaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mpasoaddcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandsdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasodeletecime_config/testmods_dirs/allactive/v2_wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eameditcime_config/tests.pydeletecime_config/testmods_dirs/allactive/v2_wcprod/READMEaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcomponents/mpas-source1014e7d6de80a2e2a2da437eb576fe8f7f52b7e71611860531000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: propagate ocn_diagnostics_variables to shared/ 2021-01-28 11:02:11 -08001014e7d6de80a2e2a2da437eb576fe8f7f52b7e7Update mpas-source: propagate ocn_diagnostics_variables to shared/editcomponents/mpas-sourcecomponents/mpas-ocean/driver/ocn_comp_mct.F7e5de4fc3123d79597b529212fe940d1988e84641611860603000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate argument lists in ocn_comp_mct for recent MPAS-O changes 2021-01-28 11:03:23 -08007e5de4fc3123d79597b529212fe940d1988e8464Update argument lists in ocn_comp_mct for recent MPAS-O changeseditcomponents/mpas-ocean/driver/ocn_comp_mct.Fcime3bc11f7ff417b114cb5cb565f85e8343243a0bab1611869859000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule Updating to CIME master: 6335dd8b8a02fdf1a6d2d738ac547268f60b1125 Changes: 1) mct: Remove collapse directives for Cray compiler 2) scripts: Better create_test/wait_for_tests integration, cdash improvements for nmls 3) Add support for Chrysalis in saving provenance info 4) Makefile: Remove unused logic 5) PIO2: Update PIO2 to latest version and add testing support for PIO async tests Bug fixes: 1) docs: Fix some documentation of EXEROOT 2) shr: FIx i4 in shr_reposum_mod and add comments 3) pio: bld fixes for issue with recognizing pnetcdf is in the build 4) pio2: pnetcdf detection correction [BFB] 2021-01-28 14:37:39 -07003bc11f7ff417b114cb5cb565f85e8343243a0babUpdate CIME submoduleeditcimediagnostic_v2_0/draw_clubb_budget.pyac260c9254268655a02907f439b084e8dc4a92541611883827000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated draw_clubb_budget.py to reflect the CLUBB stat name change from wp3_bp2 to wp3_pr_turb. 2021-01-28 19:30:27 -0600ac260c9254268655a02907f439b084e8dc4a9254I updated draw_clubb_budget.py to reflect the CLUBB stat name changeeditdiagnostic_v2_0/draw_clubb_budget.pycime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mosart2d919ec994fc4b4a545550df87b2560390ec68561611898900000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdded history fields back with cosp turned on 2021-01-28 21:41:40 -08002d919ec994fc4b4a545550df87b2560390ec6856Added history fields back with cosp turned oneditcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mosarteditcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmeditcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/allactive/config_pesall.xml1cb60ae45e9b72db2d7b8b915b336fe26f51bc231611934543000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds an "S" PE layout anvil 2021-01-29 09:35:43 -06001cb60ae45e9b72db2d7b8b915b336fe26f51bc23Adds an "S" PE layout anvileditcime_config/allactive/config_pesall.xmlcomponents/mpas-sourcefd1b54555674b59ee435c151922b1303174bebcd1612213414000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate framework in mpas-source 2021-02-01 13:03:34 -0800fd1b54555674b59ee435c151922b1303174bebcdUpdate framework in mpas-sourceeditcomponents/mpas-sourcecime_config/machines/config_compilers.xmle5d4c520dde286358e4838902d9aa3ccd7f584ae1612230164000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate CXXFLAGS 2021-02-02 01:42:44 +0000e5d4c520dde286358e4838902d9aa3ccd7f584aeUpdate CXXFLAGSeditcime_config/machines/config_compilers.xmlcomponents/mpas-ocean/driver/ocn_comp_mct.Fcfb7b56ff0d3a695866cf75763deabf58273e20e1612285285000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUse ocn_diagnostics_variables in ocn_comp_mct driver 2021-02-02 09:01:25 -0800cfb7b56ff0d3a695866cf75763deabf58273e20eUse ocn_diagnostics_variables in ocn_comp_mct drivereditcomponents/mpas-ocean/driver/ocn_comp_mct.Fcime_config/machines/config_machines.xml24c44bd73f6a7f0211d89ee701da8db7a6eacea21612285540000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govExplicitly specify UCX transport Explicitly specifying the UCX transport to use with OpenMPI on Chrysalis. This change fixes the data corruption seen with OpenMPI 4.0.4 on Chrysalis 2021-02-02 11:05:40 -060024c44bd73f6a7f0211d89ee701da8db7a6eacea2Explicitly specify UCX transporteditcime_config/machines/config_machines.xmlcomponents/mpas-source86bd07b70f73c2ae66cd89c0cd157681dc903e4e1612288420000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: finish propagating ocn_diagnostics_variables 2021-02-02 09:53:40 -080086bd07b70f73c2ae66cd89c0cd157681dc903e4eUpdate mpas-source: finish propagating ocn_diagnostics_variableseditcomponents/mpas-sourcecime8306e0e8e59469c4bcb3b4b12a691fcbf79d010b1612294877000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime again to remove PIO performance degradation 2021-02-02 12:41:17 -07008306e0e8e59469c4bcb3b4b12a691fcbf79d010bUpdate cime again to remove PIO performance degradationeditcimecomponents/eam/bld/build-namelistcomponents/eam/cime_config/config_component.xml209024f3bd30f549e39cce265c85bb65f9aef13b1612298855000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFixes for F-EAMv1 and F-MMF1 compsets needed after phys name change 2021-02-02 12:47:35 -0800209024f3bd30f549e39cce265c85bb65f9aef13bFixes for F-EAMv1 and F-MMF1 compsets needed after phys name changeeditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_component.xmlcime_config/allactive/config_pesall.xml06675f5a97e3d1eec0388b3b371f1763d68f862e1612338562000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdding PE layouts for v2RRM on cori-knl nodes sypd (estimate) 39 1.4 S 77 2.1 M 147 2.7 L 2021-02-02 23:49:22 -080006675f5a97e3d1eec0388b3b371f1763d68f862eAdding PE layouts for v2RRM on cori-knleditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/radiation_data.F90components/eam/src/physics/cam/wv_sat_scream.F90components/eam/src/physics/cam/microp_driver.F90components/eam/src/physics/cam/cloud_diagnostics.F90components/eam/src/physics/cam/micro_p3_utils.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/scream_abortutils.F90components/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/cam/debug_info.F90components/eam/src/physics/cam/physics_utils.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/bld/configurecomponents/eam/src/physics/cam/phys_control.F90components/eam/src/physics/cam/check_energy.F90components/eam/bld/build-namelist86f74f92519f53252df34ba757608aac0092b8bb1612392277000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am cherry-picking git commit 6e2592c from January 13, 2021 and adding it to this new E3SM-CLUBB-SILHS P3 branch: Coupling the P3 microphysics scheme as an option in the E3SMv2_alpha5_59 candidate Conflicts: components/eam/bld/namelist_files/namelist_defaults_cam.xml 2021-02-03 16:44:37 -060086f74f92519f53252df34ba757608aac0092b8bbI am cherry-picking git commit 6e2592c from January 13, 2021 and addingeditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/bld/configureeditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/cam/physpkg.F90addcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/microp_driver.F90editcomponents/eam/src/physics/cam/radiation_data.F90editcomponents/eam/src/physics/cam/check_energy.F90addcomponents/eam/src/physics/cam/physics_utils.F90addcomponents/eam/src/physics/cam/micro_p3_utils.F90addcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/bld/build-namelistaddcomponents/eam/src/physics/cam/scream_abortutils.F90addcomponents/eam/src/physics/cam/wv_sat_scream.F90editcomponents/eam/src/physics/cam/cloud_diagnostics.F90addcomponents/eam/src/physics/cam/debug_info.F90editcomponents/eam/bld/config_files/definition.xmlcime24788161ada510259f4b664552bbfb2baa851e351612393185000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCIME submodule update Update CIME submodule to 743a2c9670dabcff67058b80b30aac22b2d9633a Changes: 1) Add a new env_case XML value for E3SM: CASE_GROUP Fixes: 1) Fix run_exe handling in CIME [BFB] 2021-02-03 15:59:45 -070024788161ada510259f4b664552bbfb2baa851e35CIME submodule updateeditcimecomponents/mpas-sourcedb1eefe27f363f7abd22b5ca9ca27357b3581a481612397051000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Move surface pressure and zMid before EOS 2021-02-03 16:04:11 -0800db1eefe27f363f7abd22b5ca9ca27357b3581a48update mpas-source: Move surface pressure and zMid before EOSeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90f056a3d4e527c21f52d4fc8d0b92268b3bb70cd21612409015000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix restart NBFB when clubb_ipdf_call_placement=2 Restart tests would fail when clubb_ipdf_call_placement=2 is used. Five component variables (w_1, w_2, varnce_w_1, varnce_w_2, and mixt_frac.) in pdf_params_zm after returning from advance_clubb_core must be saved to restart file and read back to preserve BFB upon restart, when ipdf_call_placement equals ipdf_post_advance_fields (=2) The addition of these 5 variables increase the eam.r file size by 1.6% [BFB] for existing tests before #4033, but they are to be merged together. #4033 will be responsible for all diffs of tests involving active atmos except for wcprod tests. Fixes #4064 2021-02-03 19:23:35 -0800f056a3d4e527c21f52d4fc8d0b92268b3bb70cd2Fix restart NBFB when clubb_ipdf_call_placement=2editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/advect_all_scalars.cppcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/periodic.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/scalar_momentum.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/fftpack5_1d.F90components/eam/src/physics/crm/samxx/test/cpp_driver.F90components/eam/src/physics/crm/samxx/timeloop.hcomponents/eam/src/physics/crm/samxx/fftpack5.F90components/eam/src/physics/crm/samxx/scalar_momentum.ha9207f461ed39aeaea9db851f1f8295e5e61b4b61612454430000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govimplement esmt to samxx 2021-02-04 11:00:30 -0500a9207f461ed39aeaea9db851f1f8295e5e61b4b6implement esmt to samxxeditcomponents/eam/src/physics/crm/samxx/periodic.cppeditcomponents/eam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_physics.F90addcomponents/eam/src/physics/crm/samxx/scalar_momentum.heditcomponents/eam/src/physics/crm/samxx/vars.cppaddcomponents/eam/src/physics/crm/samxx/scalar_momentum.cppeditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/eam/src/physics/crm/samxx/timeloop.heditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/timeloop.cppaddcomponents/eam/src/physics/crm/samxx/fftpack5.F90editcomponents/eam/src/physics/crm/samxx/crm.cppaddcomponents/eam/src/physics/crm/samxx/fftpack5_1d.F90editcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F908a2d42389d6d8182111a335f66aa29fc24d77d8a1612456599000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govfix dmdf_write typo 2021-02-04 11:36:39 -05008a2d42389d6d8182111a335f66aa29fc24d77d8afix dmdf_write typoeditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/cime_config/buildnmleffdba8f9d4d5333f4fc40ae7bd00880b66f760c1612566173000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd 2 degree mosart grid as option 2021-02-05 17:02:53 -0600effdba8f9d4d5333f4fc40ae7bd00880b66f760cAdd 2 degree mosart grid as optioneditcomponents/mosart/cime_config/buildnmleditcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcime_config/config_grids.xmla922d7aac2f5e860b20c9e937ca4846e9e6effc11612566452000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd r2_r2 grid alias and r2 domain Add r2_r2 grid alias and r2 domain for the new 2 deg MOSART grid 2021-02-05 17:07:32 -0600a922d7aac2f5e860b20c9e937ca4846e9e6effc1Add r2_r2 grid alias and r2 domaineditcime_config/config_grids.xmlcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cpp0529897abfc9b2c0a861edf70234596980589ca51612802083000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govfix some VT implementation issues 2021-02-08 11:34:43 -05000529897abfc9b2c0a861edf70234596980589ca5fix some VT implementation issueseditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcime12e639010f259377cf8bafb2f98f7921908226c01612828569000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCIME submodule update Update CIME submodule to 6f2688798e6d65606514769124c276c943932d4b Fixes: 1) env_mach_specific needs to process all mpirun nodes from machobj. This will fix compy create_newcase problems. [BFB] 2021-02-08 16:56:09 -070012e639010f259377cf8bafb2f98f7921908226c0CIME submodule updateeditcimecomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/build-namelistcime_config/tests.pycomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/cime_config/config_component.xml3140a6922217df989b9d720d5054142a7abe91a31612831502000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove _ICG ocn/ice grids, instead cue off compset option SPUNUP 2021-02-08 18:45:02 -06003140a6922217df989b9d720d5054142a7abe91a3Remove _ICG ocn/ice grids, instead cue off compset option SPUNUPeditcomponents/mpas-ocean/cime_config/config_component.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcime_config/config_grids.xmleditcime_config/tests.pyeditcomponents/mpas-seaice/bld/build-namelisteditcomponents/mpas-ocean/cime_config/buildnmlcomponents/eam/bld/build-namelista93979c8938afd8680697f8634169559a1934c011612896277000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix for aero_model when chem is none after phys namm change A conditional block in build-namelist for prescribed_aero_model was not updated accordingly after the change for phys name (#4033). This causes prescribed_aero_model to be none and several tests that use modal model as default to fail during runtime. The tests affected are AQP1, RCEMIP and MMF tests [BFB] no impact on other tests. AQP1, RCEMIP, MMF tests will still be BFB but they are the results of #4033. 2021-02-09 10:44:37 -0800a93979c8938afd8680697f8634169559a1934c01Fix for aero_model when chem is none after phys namm changeeditcomponents/eam/bld/build-namelistcomponents/homme/src/theta-l_kokkos/cxx/RemapStateProvider.hpp052cfec7c888c622f0503e64e61dad9a09ac68251612897476000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: bug fix in RemapStateProvider Using ViewT::shmem_size returns *more* than the view size (one value type more, to be precise), which caused the creation of a temporary that was a bit larger than planned. Note: this error was innocuous in real runs (where the fuunctor buffers manager had enough memory to accommodate way more than the RemapStateProvider needed), but caused some valgrind errors during unit tests. 2021-02-09 12:04:36 -0700052cfec7c888c622f0503e64e61dad9a09ac6825Hommexx: bug fix in RemapStateProvidereditcomponents/homme/src/theta-l_kokkos/cxx/RemapStateProvider.hppcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_interface.F90components/homme/test_execs/thetal_kokkos_ut/remap_theta_ut.cpp74f652821db1ae9a91a3c60c7784826cc14c718f1612899833000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: test also tracers in remap_theta_ut 2021-02-09 12:43:53 -070074f652821db1ae9a91a3c60c7784826cc14c718fHommexx: test also tracers in remap_theta_uteditcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_interface.F90editcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_ut.cppcomponents/mpas-sourcee66659c23ade4046be7b0132545fddad0f6da9531612913798000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Improved sea ice column error messages 2021-02-09 17:36:38 -0600e66659c23ade4046be7b0132545fddad0f6da953Update mpas-source: Improved sea ice column error messageseditcomponents/mpas-sourcecomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/cime_config/config_component.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/cime_config/config_component.xmlcime_config/allactive/config_compsets.xml72cf0c3274b9c71844b95232534b7da0a458b9501612914579000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govChange from keying off %SPUNUP to including SOI in compset longname 2021-02-09 17:49:39 -060072cf0c3274b9c71844b95232534b7da0a458b950Change from keying off %SPUNUP to including SOI in compset longnameeditcomponents/mpas-seaice/cime_config/config_component.xmleditcime_config/allactive/config_compsets.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/config_component.xmlcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90ac1961793f4b2f0b93f6365f30ca42209898dcf21612945699000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering P3 for SILHS by making changes equivalent to the microp_uniform flag that is found in MG microphysics. Within the context of P3, I am using SILHS preprocessor flags to accomplish this. 2021-02-10 02:28:19 -0600ac1961793f4b2f0b93f6365f30ca42209898dcf2I am altering P3 for SILHS by making changes equivalent to theeditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/physpkg.F90506f8895e7838229bc18e47e5bb0740ec0d57af91612995136000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix an issue that uses dcape related codes when ZM is not used A block of codes in tphysac access pbuf for T_STAR and Q_STAR that are used for dcape calculation. The block should only be invoked when deep_scheme = 'ZM' but proper condition was not applied, causing the test F-EAMv1-AQP1.eam-clubb_only to fail as it sets deep_scheme = 'off'. The fix now adds a condition on deep_scheme. The above test only became an issue after #4033 which set default zmconv_trigdcape_ull = .true. [BFB] for all tests, while F-EAMv1-AQP1.eam-clubb_only would report diff due to #4033. 2021-02-10 14:12:16 -0800506f8895e7838229bc18e47e5bb0740ec0d57af9Fix an issue that uses dcape related codes when ZM is not usededitcomponents/eam/src/physics/cam/physpkg.F90components/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnml8fddd73862282f3d34eb023426d69894417b3d0a1613057834000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates MPAS ocean and sea ice conditions Updates apply to the EC30to60E2r2 and WC14 only, does not update 1900 conditions 2021-02-11 09:37:14 -06008fddd73862282f3d34eb023426d69894417b3d0aUpdates MPAS ocean and sea ice conditionseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlca65b204e19e487a7ba250d049b4be4245f2fd781613058667000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates defaults for EC30to60 and WC14 Some parameters were not consistent between these meshes. GM_closure=constant is used for both meshes and the eddy ramp is enabled There was also a small configuration error for GMPAS-JRA for the WC14 mesh that is fixed as well 2021-02-11 09:51:07 -0600ca65b204e19e487a7ba250d049b4be4245f2fd78Updates defaults for EC30to60 and WC14editcime_config/config_grids.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-source9df320f66919ce6387e3c0da5d45eee28f1814211613065000000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: make ocean init mode optional 2021-02-11 09:36:40 -08009df320f66919ce6387e3c0da5d45eee28f181421update mpas-source: make ocean init mode optionaleditcomponents/mpas-sourcecomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelistdcc4044d2e5e6b1d5743bc3266cd56802a65a0741613065010000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate E3SM bld scripts to reflect changes to the ocean Registry 2021-02-11 09:36:50 -0800dcc4044d2e5e6b1d5743bc3266cd56802a65a074Update E3SM bld scripts to reflect changes to the ocean Registryeditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelist-group-listeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmlcime_config/tests.pycomponents/mpas-ocean/cime_config/buildnml6e3483f2c63aa8ce424b7ea5a9b756b8d487f63e1613076653000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove the "-1900" grids as a mechanism for designating different ICs 2021-02-11 14:50:53 -06006e3483f2c63aa8ce424b7ea5a9b756b8d487f63eRemove the "-1900" grids as a mechanism for designating different ICseditcomponents/mpas-ocean/cime_config/buildnmleditcime_config/config_grids.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcime_config/tests.pycomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F9074917ed17f50ad60d9f1dc7a1b4b3354c8bb5ec91613079000000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am exporting the fields from P3 microphysics that are necessary for use in the SILHS hole filler. 2021-02-11 15:30:00 -060074917ed17f50ad60d9f1dc7a1b4b3354c8bb5ec9I am exporting the fields from P3 microphysics that are necessaryeditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90cime_config/allactive/config_pesall.xmlc58f43e168b497bc6b80acaca02ab288f46b150d1613080629000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd default layouts for G-cases using EC30to60 on anvil/chrysalis/compy 2021-02-11 15:57:09 -0600c58f43e168b497bc6b80acaca02ab288f46b150dAdd default layouts for G-cases using EC30to60 on anvil/chrysalis/compyeditcime_config/allactive/config_pesall.xmlcime_config/config_grids.xmlcfefcb17588af73cd2619e3411c2442bf5a39e6d1613081602000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd domain file for r2 Change mask to oQU480 for r2_r2 and add a matching domain file. This allows the case to run 2021-02-11 16:13:22 -0600cfefcb17588af73cd2619e3411c2442bf5a39e6dAdd domain file for r2editcime_config/config_grids.xmlcomponents/mpas-sourceb78968bd09feced267fb913e886157807dff6c6d1613148487000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fix core_ocean submodule checks in cmake 2021-02-12 08:48:07 -0800b78968bd09feced267fb913e886157807dff6c6dupdate mpas-source: Fix core_ocean submodule checks in cmakeeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmld1fc1278684f44452f6a27bd36e2c1efeaff635d1613157443000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govfor chrsyalis: initial set of PE layouts for RRMv2 2021-02-12 13:17:23 -0600d1fc1278684f44452f6a27bd36e2c1efeaff635dfor chrsyalis: initial set of PE layouts for RRMv2editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml1339c4fe82af428650c72d2f001f68dfc54628ab1613164269000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate default ne30-WC pelayout 2021-02-12 15:11:09 -06001339c4fe82af428650c72d2f001f68dfc54628abUpdate default ne30-WC pelayouteditcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml997d1639008d25fdc347470fb5551c6a8bb2cba21613184827000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govDefault to a 60-node pelayout 2021-02-12 20:53:47 -0600997d1639008d25fdc347470fb5551c6a8bb2cba2Default to a 60-node pelayouteditcime_config/allactive/config_pesall.xmlcime_config/machines/Depends.cray.cmake482bae6ffe7cdc76bfd9ffb1bdc48bd3072476d31613428773000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate cray-specific flags 2021-02-15 22:39:33 +0000482bae6ffe7cdc76bfd9ffb1bdc48bd3072476d3Update cray-specific flagseditcime_config/machines/Depends.cray.cmakecomponents/eam/src/chemistry/mozart/charge_neutrality.F90components/eam/src/chemistry/utils/mo_msis_ubc.F90components/homme/src/share/vertremap_base.F90components/eam/src/physics/waccm/qbo.F90components/eam/src/chemistry/utils/mo_flbc.F90components/eam/src/control/wrap_nf.F90components/eam/src/physics/cam/physics_update_mod.F90components/eam/src/chemistry/bulk_aero/dust_model.F90components/eam/src/physics/waccmx/majorsp_diffusion.F90components/eam/src/control/scamMod.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/chemistry/modal_aero/dust_model.F90components/eam/src/dynamics/eul/eul_single_column_mod.F90components/eam/src/chemistry/mozart/mo_neu_wetdep.F90components/eam/src/chemistry/modal_aero/seasalt_model.F90components/eam/src/chemistry/utils/modal_aero_deposition.F90components/eam/src/chemistry/mozart/mo_snoe.F90cime_config/machines/config_compilers.xmlcomponents/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/cam/phys_debug.F90components/eam/src/physics/waccm/iondrag.F90components/eam/src/chemistry/bulk_aero/aero_model.F90components/eam/src/chemistry/mozart/chemistry.F90components/eam/src/physics/cam/physics_types.F90components/eam/src/physics/cam/sslt_rebin.F90components/homme/src/share/control_mod.F90components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90components/eam/src/chemistry/mozart/mo_chm_diags.F90components/eam/src/dynamics/se/se_single_column_mod.F90components/eam/src/control/cam_history.F90components/eam/src/chemistry/bulk_aero/seasalt_model.F90components/eam/src/physics/cam/constituents.F90components/eam/src/chemistry/mozart/cfc11star.F90components/eam/src/physics/cam/check_energy.F9026a9f0b71f83bba8369598252dfb997f1467fe891613429294000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate FFLAGS and rename abort redeclarations Add '-vector0' and rename use-associated name 'abort'. 2021-02-15 22:48:14 +000026a9f0b71f83bba8369598252dfb997f1467fe89Update FFLAGS and rename abort redeclarationseditcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/chemistry/bulk_aero/aero_model.F90editcomponents/eam/src/chemistry/utils/mo_msis_ubc.F90editcomponents/eam/src/physics/cam/phys_debug.F90editcomponents/eam/src/chemistry/utils/mo_flbc.F90editcomponents/eam/src/chemistry/mozart/chemistry.F90editcomponents/eam/src/dynamics/eul/eul_single_column_mod.F90editcomponents/eam/src/physics/cam/sslt_rebin.F90editcomponents/homme/src/share/vertremap_base.F90editcime_config/machines/config_compilers.xmleditcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/chemistry/bulk_aero/dust_model.F90editcomponents/eam/src/chemistry/mozart/charge_neutrality.F90editcomponents/eam/src/physics/waccmx/majorsp_diffusion.F90editcomponents/eam/src/chemistry/mozart/mo_tgcm_ubc.F90editcomponents/eam/src/physics/waccm/iondrag.F90editcomponents/eam/src/chemistry/mozart/mo_chm_diags.F90editcomponents/eam/src/physics/cam/constituents.F90editcomponents/eam/src/control/scamMod.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/homme/src/share/control_mod.F90editcomponents/eam/src/chemistry/modal_aero/seasalt_model.F90editcomponents/eam/src/physics/waccm/qbo.F90editcomponents/eam/src/physics/cam/physics_types.F90editcomponents/eam/src/chemistry/mozart/cfc11star.F90editcomponents/eam/src/chemistry/mozart/mo_neu_wetdep.F90editcomponents/eam/src/chemistry/modal_aero/dust_model.F90editcomponents/eam/src/physics/cam/check_energy.F90editcomponents/eam/src/chemistry/mozart/mo_snoe.F90editcomponents/eam/src/control/wrap_nf.F90editcomponents/eam/src/physics/cam/physics_update_mod.F90editcomponents/eam/src/chemistry/utils/modal_aero_deposition.F90editcomponents/eam/src/physics/cam/rad_constituents.F90editcomponents/eam/src/chemistry/bulk_aero/seasalt_model.F90cime_config/machines/config_machines.xml545565e1711652e2a5ac5b74f5002370e119482c1613448531000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate cray modules 2021-02-16 04:08:51 +0000545565e1711652e2a5ac5b74f5002370e119482cUpdate cray moduleseditcime_config/machines/config_machines.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml99b5cada93bca6693e5348b864b6b8a7a0a56d271613536991000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comunifies WC14 and EC30to60 del2 and del4 2021-02-16 22:43:11 -060099b5cada93bca6693e5348b864b6b8a7a0a56d27unifies WC14 and EC30to60 del2 and del4editcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/cam/nudging.F90322fae08c0d585e93cf347fd57e86fe2e8d81af71613547642000http://carson.math.uwm.edu/jenkins/user/shixuan.zhangshixuan.zhangshixuan.zhang@pnnl.govFix an issue in nudging code This commits addresses two issues in nudging code (PR#4098) 1. Generally a user would like to run with nudging turned on if a nudging data file is mentioned in the namelist. However, current nudging code would allow the model to continue to run even if the nudging data file is not found. The code changes are made to add an endrun call so that the model exists with an error message if nudging file is not found rather than silently (or with a warning) continuing with the nudging turned OFF. 2. The character length of the nudging file name is defined as 80 in current nudging.f90. If the nudging file name is longer than 80 characters, the nudging code can not get the full name for the nudging file. In this way, nudging will not be applied. To avoid this problem, code changes are made to extend the character length of the nudging file name to 256. [BFB]: no impact on other tests. 2021-02-16 23:40:42 -0800322fae08c0d585e93cf347fd57e86fe2e8d81af7Fix an issue in nudging codeeditcomponents/eam/src/physics/cam/nudging.F90components/mpas-sourcec1906b954153083b18c10d7b33acf34e46f83d2a1613585374000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-ocean: Fixes shortwave absorption for shallow cells 2021-02-17 11:09:34 -0700c1906b954153083b18c10d7b33acf34e46f83d2aUpdate mpas-ocean: Fixes shortwave absorption for shallow cellseditcomponents/mpas-sourcecomponents/eam/src/control/cam_history.F9006e27230b24d04583bdb80a37daeb9b2075d604b1613615992000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAllow time:point cell method For any variable output as I (instantaneous) set the cell_method: time to "point" per CF requirements. 2021-02-17 20:39:52 -060006e27230b24d04583bdb80a37daeb9b2075d604bAllow time:point cell methodeditcomponents/eam/src/control/cam_history.F90components/mpas-source361d427f808cce1dea21f0248d23aa3f03aee4971613668021000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Simplify computing landIcePressure and vertical grid in ocean init mode 2021-02-18 09:07:01 -0800361d427f808cce1dea21f0248d23aa3f03aee497update mpas-source: Simplify computing landIcePressure and vertical grid in ocean init modeeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/subcol_SILHS.F90run_silhs_anvil_gust_wP3.cshcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/physpkg.F90b3e799c1b10e9d3b463a0e80cc8930433b9271c01613672873000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMade changes necessary for CLUBB-SILHS-P3 to compile. 2021-02-18 12:27:53 -0600b3e799c1b10e9d3b463a0e80cc8930433b9271c0Made changes necessary for CLUBB-SILHS-P3 to compile.editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/physpkg.F90addrun_silhs_anvil_gust_wP3.cshcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlaf5142c0922e94531386fbc2642fb472ce77bd9b1613686706000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govReplace "+=" for grid related settings with "=" 2021-02-18 16:18:26 -0600af5142c0922e94531386fbc2642fb472ce77bd9bReplace "+=" for grid related settings with "="editcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-source17cc5124d47b1a16ac0baadcc2c1170d9fe8cac71613690389000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: seaice regional stats bug 2021-02-18 17:19:49 -060017cc5124d47b1a16ac0baadcc2c1170d9fe8cac7Update mpas-source: seaice regional stats bugeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/ndrop.F90components/eam/src/chemistry/mozart/lin_strat_chem.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/cospsimulator_intr.F90components/eam/src/physics/cam/cloud_cover_diags.F90components/eam/src/physics/cam/cam_diagnostics.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/ndrop_bam.F90ee102dbdff20cfd3bd3855881b7bca05809274f51613693317000http://carson.math.uwm.edu/jenkins/user/zhang40zhang40zhang40@llnl.goveam h0 units CF compliance 2021-02-18 16:08:37 -0800ee102dbdff20cfd3bd3855881b7bca05809274f5eam h0 units CF complianceeditcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/physics/cam/cloud_cover_diags.F90editcomponents/eam/src/physics/cam/ndrop.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90editcomponents/eam/src/chemistry/mozart/lin_strat_chem.F90editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/ndrop_bam.F90editcomponents/eam/src/physics/cam/cospsimulator_intr.F90components/eam/src/control/cam_history_support.F90components/eam/src/control/cam_history.F90a37914339abe6772992affb6b16678b409df4a6b1613702134000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAllow standard_name on variable in EAM Steve Goldhaber had started to add standard_name. Finish that and, if defined, add it to the variable attribute. Update CF convention to 1.7 Change FillVaLUE TO NC_FILL (hardcoded) Add CMIP global attribute "product" 2021-02-18 20:35:34 -0600a37914339abe6772992affb6b16678b409df4a6bAllow standard_name on variable in EAMeditcomponents/eam/src/control/cam_history_support.F90editcomponents/eam/src/control/cam_history.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/cloud_diagnostics.F90f6b00795640f2861ebdecadc55751e8ba0d404a71613712956000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd standard_names to some EAM output variables Add standard_names to EAM output variables that were published as part of CMIP6 AND required no conversions. 2021-02-18 23:35:56 -0600f6b00795640f2861ebdecadc55751e8ba0d404a7Add standard_names to some EAM output variableseditcomponents/eam/src/physics/cam/cloud_diagnostics.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/crm/physpkg.F90e61094e7f30716254f591fbc6f05d055fa270ac31613753068000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd dummy args to the call of aircraft_emit_init for the crm version. 2021-02-19 08:44:28 -0800e61094e7f30716254f591fbc6f05d055fa270ac3Add dummy args to the call of aircraft_emit_init for the crm version.editcomponents/eam/src/physics/crm/physpkg.F90components/eam/src/control/cam_history_support.F90components/eam/src/physics/icarus-scops/icarus.f90components/eam/src/control/cam_history.F907d7468e70fc29a3d4f96399b0402523d52aa5d001613764434000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd more CMIP attributes Add realm, institution and source_id CMIP global attributes Change Fillvalue to CMIP default of 1.e+20 2021-02-19 13:53:54 -06007d7468e70fc29a3d4f96399b0402523d52aa5d00Add more CMIP attributeseditcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/control/cam_history_support.F90editcomponents/eam/src/physics/icarus-scops/icarus.f90components/eam/src/physics/crm/physpkg.F9032c37348b313ca42ab91a5f0d273e5d5d2c3a0b51613768907000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdditional changes to crm/physpkg.F90 made to cam/physpkg.F90 in this PR 2021-02-19 13:08:27 -080032c37348b313ca42ab91a5f0d273e5d5d2c3a0b5Additional changes to crm/physpkg.F90 made to cam/physpkg.F90 in this PReditcomponents/eam/src/physics/crm/physpkg.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/nudging.F90e1c9c0460e4c2254e003990373b20578732215701613780806000http://carson.math.uwm.edu/jenkins/user/shixuan.zhangshixuan.zhangshixuan.zhang@pnnl.govFix an issue in nudging code This commits further enhances the code changes that are made in nudging.f90 to adrress the issues of nudging when the nudged data files are not found: 1. For the endrun call when nudging data is not found, the error message is improved to print the F90 file name and line number where the error occurred. 2. Add a logical namelist variable "Nudge_Allow_Missing_File" to allow the user to decide whether the model should exist or conitinue to run when the nudged data files are not found 2021-02-19 16:26:46 -0800e1c9c0460e4c2254e003990373b2057873221570Fix an issue in nudging codeeditcomponents/eam/src/physics/cam/nudging.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/namelist_mod.F90components/homme/src/share/viscosity_base.F90components/homme/src/share/gllfvremap_util_mod.F90components/homme/test/tool/READMEcomponents/homme/src/tool/tool_main.F90components/homme/src/share/prim_driver_base.F90components/homme/src/share/control_mod.F90components/homme/test/tool/ncl/topospectra.ncl3c0c373a6b0d9c771fbd1fba25f749615b6a56221613934009000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgupdate to topo generation tool new p2 interpolation filter option ability of pg2/gll tool to read GLL data instead of PG4 data 2021-02-21 13:00:09 -06003c0c373a6b0d9c771fbd1fba25f749615b6a5622update to topo generation tooleditcomponents/homme/src/share/viscosity_base.F90editcomponents/homme/src/share/control_mod.F90editcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/tool/tool_main.F90editcomponents/homme/test/tool/READMEeditcomponents/homme/src/share/gllfvremap_util_mod.F90editcomponents/homme/test/tool/ncl/topospectra.ncleditcomponents/homme/src/share/namelist_mod.F90components/homme/src/share/interpolate_mod.F90adcc52bc821e0940a90ac8148db57046edd03d441613967327000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgimprove omp reduction 2021-02-21 21:15:27 -0700adcc52bc821e0940a90ac8148db57046edd03d44improve omp reductioneditcomponents/homme/src/share/interpolate_mod.F90components/homme/src/share/gllfvremap_util_mod.F900da380d6465f3593463a1c8ef65415d0180b94531613969156000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgfix incorrect comment 2021-02-21 21:45:56 -07000da380d6465f3593463a1c8ef65415d0180b9453fix incorrect commenteditcomponents/homme/src/share/gllfvremap_util_mod.F90components/homme/src/share/interpolate_mod.F90df2af18749715ff72648c54e6abb6283ba7ec8f21614026477000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgremove SHARED omp directive 2021-02-22 13:41:17 -0700df2af18749715ff72648c54e6abb6283ba7ec8f2remove SHARED omp directiveeditcomponents/homme/src/share/interpolate_mod.F90components/elm/cime_config/config_component.xmlcomponents/eam/cime_config/config_component.xml36d046a367f7c1b352b9b433f9e55e503fe6affe1614030383000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd optional pattern matching for SOI in compset names 2021-02-22 15:46:23 -060036d046a367f7c1b352b9b433f9e55e503fe6affeAdd optional pattern matching for SOI in compset nameseditcomponents/eam/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LRtunedHR.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_atmmod.xml546b85258733f36fc9a29c37d1a553189d579ac11614031454000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove some use_case files not used in v2 2021-02-22 14:04:14 -0800546b85258733f36fc9a29c37d1a553189d579ac1Remove some use_case files not used in v2deletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_atmmod.xmldeletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LRtunedHR.xmlcomponents/eam/src/physics/cam/cloud_diagnostics.F9071d63b3917f17c68b2ab8b65f05257bf064166d11614033339000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFix standard_name for TGCLDCWP TGCLDLWP After review, fix standard_name for TGCLDCWP TGCLDLWP 2021-02-22 16:35:39 -060071d63b3917f17c68b2ab8b65f05257bf064166d1Fix standard_name for TGCLDCWP TGCLDLWPeditcomponents/eam/src/physics/cam/cloud_diagnostics.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F90833bf54c25266dad0f1d9748e529e83fb0ff5c5e1614034744000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd standard_names for FLUT, SWCF, LWCF, PRECC, PRECT 2021-02-22 14:59:04 -0800833bf54c25266dad0f1d9748e529e83fb0ff5c5eAdd standard_names for FLUT, SWCF, LWCF, PRECC, PRECTeditcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/elm/src/main/histFileMod.F90components/elm/src/main/ncdio_pio.F90.in4837b70fda4d46a827d0efe220d89eb3bc98cde31614047034000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd ability to pass standard_name when defining history Add ability to pass standard_name as an argument in the history file routines. 2021-02-22 20:23:54 -06004837b70fda4d46a827d0efe220d89eb3bc98cde3Add ability to pass standard_name when defining historyeditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/ncdio_pio.F90.incomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F906b975b39cafe4e038d4d01c0de20039bd62488901614053464000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove standard_names for PRECC, PRECT, FLUT 2021-02-22 20:11:04 -08006b975b39cafe4e038d4d01c0de20039bd6248890Remove standard_names for PRECC, PRECT, FLUTeditcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/elm/src/main/histFileMod.F90e9998e1943ef7ca0a165fe106529b59f257a45841614058104000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMake sure standard_name is output Add rest of code to add standard_name to variable attribute. 2021-02-22 23:28:24 -0600e9998e1943ef7ca0a165fe106529b59f257a4584Make sure standard_name is outputeditcomponents/elm/src/main/histFileMod.F90components/mpas-source292ace29250fb713314e3820845bb572b5fee7451614102606000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Add Wright (1997) equation of state 2021-02-23 09:50:06 -0800292ace29250fb713314e3820845bb572b5fee745update mpas-source: Add Wright (1997) equation of stateeditcomponents/mpas-sourcecimed9a147b5740429662af6d54ca24543d4b701c2e31614104431000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule To 2b49cf54f1fb0a53832762dc29f19fc31c491d31 Changes: 1) Adds support of DATM_MODE=CLM1PT for ELM 2) Update driver-mct support for trigrid configuration where lnd is not on the atm grid Fixes: 1) Fix compare test results undefined 2) SCORPIO needs _PNETCDF 3) scripts_regression_tests: Fixes cleaning up only on success 4) bless/compare_test_results should not process build-only tests 5) wait_for_tests: Make update success more robust [BFB] 2021-02-23 11:20:31 -0700d9a147b5740429662af6d54ca24543d4b701c2e3Update CIME submoduleeditcimecomponents/eam/bld/namelist_files/use_cases/1850_cam4_trop_bam.xmlcomponents/eam/bld/namelist_files/use_cases/1950_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_linoz_plmod_plus_resus.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5.xmlcomponents/eam/bld/namelist_files/use_cases/1850S_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-HR.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcime_config/tests.pycomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-HR.xmlcomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-LR.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4_2xco2.xmlcime_config/allactive/config_compsets.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LR.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4_super_fast_llnl.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_cosp.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_plmod_plus_resus.xmlb6607f1b41a4531b514fd55b2fbd2a340f3b8a081614113647000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCleanup of unused compsets and grids for v2 This PR continues to clean up obsolete compsets from v1 and the associated entries in the config files and the use_case files. Default settings in namelist_defaults_eam.xml for non-SE grids and older physpkg are also removed. Several new compset aliases are also added: WCYCL1950, WCYCL20TR, F1850 and F1950. The longname for WCYCL1950 and WCYCL20TR (and pre-existing W1850) will need to be updated after PR #4085. So do hThe compset pattern matching for EAM use caae. Tests using the following compsets will be renamed as 'v1' is now dropped from the compset names. F-EAMv1-AQP1, F-EAMv1-RCEMIP. There are five such tests. [BFB] 2021-02-23 12:54:07 -0800b6607f1b41a4531b514fd55b2fbd2a340f3b8a08Cleanup of unused compsets and grids for v2deletecomponents/eam/bld/namelist_files/use_cases/1850_cam4.xmldeletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LR.xmleditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_component.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850S_cam5_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_trop_bam.xmldeletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-HR.xmleditcime_config/allactive/config_compsets.xmladdcomponents/eam/bld/namelist_files/use_cases/1950_eam_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-HR.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmleditcime_config/tests.pydeletecomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-LR.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_cosp.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_super_fast_llnl.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_2xco2.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_linoz_plmod_plus_resus.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_plmod_plus_resus.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelist9fd34fb41396c87f6ae9856c110669fe25fc52e91614117910000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate bld scripts to match changes in ocean core Registry 2021-02-23 16:05:10 -06009fd34fb41396c87f6ae9856c110669fe25fc52e9Update bld scripts to match changes in ocean core Registryeditcomponents/mpas-ocean/bld/build-namelist-group-listeditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/eam/src/physics/cam/subcol.F90components/eam/src/physics/cam/subcol_SILHS.F90run_silhs_anvil_gust_wP3.cshcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/physpkg.F90d0ded0101781d7c07b9c45767e1f92ab079ff63f1614122404000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for my changes so far to run P3. 2021-02-23 17:20:04 -0600d0ded0101781d7c07b9c45767e1f92ab079ff63fUpdated for my changes so far to run P3.editcomponents/eam/src/physics/cam/subcol.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90editrun_silhs_anvil_gust_wP3.csheditcomponents/eam/src/physics/cam/physpkg.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/histFileMod.F90d49a443f0d59525c106e290d9c1e40750b0c2abf1614123826000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd and update global attributies Add CMIP global attributes update CF to 1.7 2021-02-23 17:43:46 -0600d49a443f0d59525c106e290d9c1e40750b0c2abfAdd and update global attributieseditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/elm_varctl.F90components/elm/src/data_types/ColumnDataType.F902e5d9c2d62cfb7ccafb90ce5b60eb666ccb1f2ef1614123893000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd a couple of standard names Add a couple of standard names that were part of CMIP6 to ELM history. 2021-02-23 17:44:53 -06002e5d9c2d62cfb7ccafb90ce5b60eb666ccb1f2efAdd a couple of standard nameseditcomponents/elm/src/data_types/ColumnDataType.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/glcDiagnosticsMod.F90components/elm/src/main/histFileMod.F90components/elm/src/biogeochem/CropType.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/main/glc2lndMod.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/main/subgridRestMod.F90components/elm/src/main/elm_varcon.F90components/elm/src/biogeophys/SoilStateType.F900a1c04dbe83e6ff2aa64fa078534b736ef60c06c1614143322000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFix CF units and change spval Replace non-CF units "none" and "unitless" with "1". Replace spval with the CMIP value 1.e+20 Replace cell_method "instantaneous" with "point". 2021-02-23 23:08:42 -06000a1c04dbe83e6ff2aa64fa078534b736ef60c06cFix CF units and change spvaleditcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/main/glcDiagnosticsMod.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/biogeophys/WaterStateType.F90components/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/eam/cime_config/config_component.xml0208ec62e9f49f0ad1ce2ed9d357587eeab79d741614143658000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govPut back use_case 1850_cam5_av1c-04p2 to avoid diff of A_WCYCL1850 tests 2021-02-23 21:14:18 -08000208ec62e9f49f0ad1ce2ed9d357587eeab79d74Put back use_case 1850_cam5_av1c-04p2 to avoid diff of A_WCYCL1850 testseditcomponents/eam/cime_config/config_component.xmladdcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/mosart/src/riverroute/RtmIO.F90components/mosart/src/riverroute/RtmVar.F90components/mosart/src/riverroute/RtmHistFlds.F90components/mosart/src/riverroute/RtmTimeManager.F90components/mosart/src/riverroute/RtmHistFile.F90b811225446dc1c38a84be39fecea3fbf5e914c051614145888000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate MOSART output for CF and CMIP Update MOSART output for CF and CMIP CMIP: replace spval with 1.e_20 CMIP: add global attributes CF: replace non-compliant units "unitless" and "none". CF: Replace "instantaneous" cell_method with "point". 2021-02-23 23:51:28 -0600b811225446dc1c38a84be39fecea3fbf5e914c05Update MOSART output for CF and CMIPeditcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/mosart/src/riverroute/RtmTimeManager.F90editcomponents/mosart/src/riverroute/RtmIO.F90editcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/riverroute/RtmHistFile.F90components/eam/cime_config/config_compsets.xml13b647edd96bd8962578d8fb1df0fdb8120b72951614180516000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRestore accidentally removed compset FSCM5A97 2021-02-24 07:28:36 -080013b647edd96bd8962578d8fb1df0fdb8120b7295Restore accidentally removed compset FSCM5A97editcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-source2f03689881f1de211675bd3ee53f3afa68f2d18e1614184039000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: pgi syntax fix 2021-02-24 08:27:19 -08002f03689881f1de211675bd3ee53f3afa68f2d18eUpdate mpas-source: pgi syntax fixeditcomponents/mpas-source.circleci/config.yml83707617b3806c686b3f8e16e75510a1884a11141614283575000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduRun CircleCI on master branch only 2021-02-25 14:06:15 -060083707617b3806c686b3f8e16e75510a1884a1114Run CircleCI on master branch onlyedit.circleci/config.ymlcomponents/mpas-source734a30aa4e3dfdf20abd99a325651b6b9989f4fe1614285453000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Removes shortwave energy conservation fix 2021-02-25 12:37:33 -0800734a30aa4e3dfdf20abd99a325651b6b9989f4feupdate mpas-source: Removes shortwave energy conservation fixeditcomponents/mpas-sourcecomponents/eam/cime_config/config_component.xmle3c517d63831acd50886a66966bcbe8292c4d39d1614286321000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove 1950 and 2010 specific build-config entries The entries with -DAPPLY_POST_DECK_BUGFIXES which is for v1. 2021-02-25 12:52:01 -0800e3c517d63831acd50886a66966bcbe8292c4d39dRemove 1950 and 2010 specific build-config entrieseditcomponents/eam/cime_config/config_component.xmlcomponents/elm/src/main/elm_varcon.F90components/elm/src/main/ncdio_pio.F90.in15a53c975151126f884347aaf6113ef01c2b5f121614287488000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRestore spval and fillvalue to 1.e36 Restore spval and fillvalue to 1.e36. Changing it produced unexpected diffs with baselines. Need to consider more carefully how spval is used. finidat also has it set to 1.e36 2021-02-25 15:11:28 -060015a53c975151126f884347aaf6113ef01c2b5f12Restore spval and fillvalue to 1.e36editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/main/ncdio_pio.F90.incomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist2230b536f0c29e20a2599ae2c2ec65ea6041cd451614296757000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-ocean bld scripts to match changes to Registry 2021-02-25 17:45:57 -06002230b536f0c29e20a2599ae2c2ec65ea6041cd45Update mpas-ocean bld scripts to match changes to Registryeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelistcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlb38f9a93463c804d9668bc390c41ca9ac8469d8b1614356248000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govReorder check for bgc and spunup options to get the correct ICs 2021-02-26 10:17:28 -0600b38f9a93463c804d9668bc390c41ca9ac8469d8bReorder check for bgc and spunup options to get the correct ICseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-sourcee72917912751dc3f2e5a1208e7dfe677580b3e491614358532000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fixes missing edgeSignOnCell in redi_term2 2021-02-26 08:55:32 -0800e72917912751dc3f2e5a1208e7dfe677580b3e49update mpas-source: Fixes missing edgeSignOnCell in redi_term2editcomponents/mpas-source.circleci/config.yml95b24388aa8e34ea5e0855198bd06dc283d7d1681614365839000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduRun CircleCI on all branches 2021-02-26 12:57:19 -060095b24388aa8e34ea5e0855198bd06dc283d7d168Run CircleCI on all branchesedit.circleci/config.ymlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlaf3e7203c9f2df48cce4948d0421b95f80dd5a7f1614368971000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates WC14 and EC30to60 initial conditions 2021-02-26 13:49:31 -0600af3e7203c9f2df48cce4948d0421b95f80dd5a7fUpdates WC14 and EC30to60 initial conditionseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnml.circleci/run.sha4b7529e43e77ab07bb6801a3a754b3a538647d01614369971000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduGet verbose output from case.build in CircleCI test 2021-02-26 14:06:11 -0600a4b7529e43e77ab07bb6801a3a754b3a538647d0Get verbose output from case.build in CircleCI testedit.circleci/run.shcomponents/eam/cime_config/config_compsets.xml64846f917385548045e9a3a2b4d66af279c432ad1614460909000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCorrected the name for compset alias F-EAM-RCEMIP 2021-02-27 13:21:49 -080064846f917385548045e9a3a2b4d66af279c432adCorrected the name for compset alias F-EAM-RCEMIPeditcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-source5b1f712c612fb90c97310afc479c5e1b176c21241614632001000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: framework update 2021-03-01 12:53:21 -08005b1f712c612fb90c97310afc479c5e1b176c2124update mpas-source: framework updateeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmlbda54e6088bb4abddc4550d26f91df7c17bc57331614632766000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove redundant compy G-case layout, use previous layout for new grid 2021-03-01 13:06:06 -0800bda54e6088bb4abddc4550d26f91df7c17bc5733Remove redundant compy G-case layout, use previous layout for new grideditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F9050b4464ed1dea32200ebe4b3653d4591dd13efb51614644849000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore changes for running CLUBB-SILHS with P3 ... 2021-03-01 18:27:29 -060050b4464ed1dea32200ebe4b3653d4591dd13efb5More changes for running CLUBB-SILHS with P3 ...editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/mpas-source10e72e184c0fe1dfde494414cb38e9fd9ebf7b2e1614711594000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: stand-alone makefile addition 2021-03-02 10:59:54 -080010e72e184c0fe1dfde494414cb38e9fd9ebf7b2eupdate mpas-source: stand-alone makefile additioneditcomponents/mpas-sourcecomponents/mpas-source3d79e7a8f04ec3131448c17fc75bb689e46fb6751614793499000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: stand-alone ocean output to single precision 2021-03-03 09:44:59 -08003d79e7a8f04ec3131448c17fc75bb689e46fb675update mpas-source: stand-alone ocean output to single precisioneditcomponents/mpas-sourcecomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F90a26671283e4960a446e29ae06d0e163276ab3e5c1614803539000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTrying to get CLUBB-SILHS-P3 to run 2021-03-03 14:32:19 -0600a26671283e4960a446e29ae06d0e163276ab3e5cTrying to get CLUBB-SILHS-P3 to runeditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/mpas-source70aed30d291080e3fb398c07b44d2f16036847411614884813000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Simplifies the shortwave fixer formulation 2021-03-04 11:06:53 -080070aed30d291080e3fb398c07b44d2f1603684741update mpas-source: Simplifies the shortwave fixer formulationeditcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml038851efe1acedddd6fcbc3a38a6d912a5550f101614897889000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd bottomLayerShortwaveTemperatureFlux to timeSeriesStatsMonthlyOutput stream 2021-03-04 16:44:49 -0600038851efe1acedddd6fcbc3a38a6d912a5550f10Add bottomLayerShortwaveTemperatureFlux to timeSeriesStatsMonthlyOutput streameditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml9c9625191d7fd828859340b9a05a8716e7241e281614900304000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govEnable shortwave_energy_fixer by default 2021-03-04 17:25:04 -06009c9625191d7fd828859340b9a05a8716e7241e28Enable shortwave_energy_fixer by defaulteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/src/share/control_mod.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/namelist_mod.F90components/homme/src/theta-l/share/prim_advance_mod.F90e87e8ccc4684ea431e1c2411eb1c2655c8ee43071614901636000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgmake vtheta_thresh a namelist variable 2021-03-04 16:47:16 -0700e87e8ccc4684ea431e1c2411eb1c2655c8ee4307make vtheta_thresh a namelist variableeditcomponents/homme/src/share/control_mod.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/homme/src/theta-l/share/prim_advance_mod.F90editcomponents/homme/src/share/namelist_mod.F90components/eam/bld/namelist_files/namelist_definition.xmlf247d9884324ec0c1e1bb84cb8096a5b0447c2a31614902093000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgtypo 2021-03-04 16:54:53 -0700f247d9884324ec0c1e1bb84cb8096a5b0447c2a3typoeditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcb411451162a6e13146c522935a5fccc518b2bdf1614902292000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgimprove comments 2021-03-04 16:58:12 -0700cb411451162a6e13146c522935a5fccc518b2bdfimprove commentseditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/mpas-sourcedef85d26b99e69f1f704f56a42bed86cb6d804eb1614962583000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: sediment transport design document 2021-03-05 08:43:03 -0800def85d26b99e69f1f704f56a42bed86cb6d804ebupdate mpas-source: sediment transport design documenteditcomponents/mpas-sourcecomponents/mpas-sourceddd8d221dd23bdaa83400291d9e09da408d659941615223275000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: cleanup of ocean split-explicit driver 2021-03-08 09:07:55 -0800ddd8d221dd23bdaa83400291d9e09da408d65994update mpas-source: cleanup of ocean split-explicit drivereditcomponents/mpas-sourcecomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hpp60bff179fb4d5b594369ce79d71d47614357bb601615244646000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comadjust constant 2021-03-08 17:04:06 -060060bff179fb4d5b594369ce79d71d47614357bb60adjust constanteditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppexternals/scorpioc6eb93dff24dd8f66dfc465e1999046d488832331615258975000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio version 1.2.0 This release includes the following major changes, * Scorpio I/O performance statistics * Performance improvements for the BOX rearranger * Misc fixes for ADIOS 2021-03-08 21:02:55 -0600c6eb93dff24dd8f66dfc465e1999046d48883233Updating to Scorpio version 1.2.0editexternals/scorpiocomponents/mpas-source549d4ef098e55dc1d7b4fef61b46d225f725de421615310236000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: init mode case 2021-03-09 09:17:16 -0800549d4ef098e55dc1d7b4fef61b46d225f725de42Update mpas-source: init mode caseeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/micro_p3_interface.F90ceb3498d84f4ee2353bc0506a7be827241727a211615932496000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have edited the P3 interface in an attempt to get everything working. 2021-03-16 17:08:16 -0500ceb3498d84f4ee2353bc0506a7be827241727a21I have edited the P3 interface in an attempt to get everything working.editcomponents/eam/src/physics/cam/micro_p3_interface.F90externals/scorpio0347dd041740fdb8627a872566fcec0556f055f61616097318000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the checkout of scorpio so we'd have a bug fix. 2021-03-18 14:55:18 -05000347dd041740fdb8627a872566fcec0556f055f6I updated the checkout of scorpio so we'd have a bug fix.editexternals/scorpiocomponents/eam/src/physics/cam/subcol_SILHS.F90ef92e8333e6a554b55a965026681e8f978365d291616780066000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWith these changes to some of the code in SILHS, CLUBB-SILHS-P3 finally runs to completion!! 2021-03-26 12:34:26 -0500ef92e8333e6a554b55a965026681e8f978365d29With these changes to some of the code in SILHS, CLUBB-SILHS-P3 finally runs to completion!!editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/physpkg.F90926ca5298713cfde1c8c56355af769646fbb03231616822993000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduEdited so that the code still works with MG microphysics. 2021-03-27 00:29:53 -0500926ca5298713cfde1c8c56355af769646fbb0323Edited so that the code still works with MG microphysics.editcomponents/eam/src/physics/cam/physpkg.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90c9b1c8a7a78e86ff56daab7be1e949ac136b0ceb1618608877000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI officially updated the code to read in version 4.1.1 of the P3 lookup tables. 2021-04-16 16:34:37 -0500c9b1c8a7a78e86ff56daab7be1e949ac136b0cebI officially updated the code to read in version 4.1.1 of the P3 lookup tables.editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/subcol_SILHS.F90a0f12d7dbfda2686db78405cd92b0a51d8f7ce041618869490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed the memory bug. 2021-04-19 16:58:10 -0500a0f12d7dbfda2686db78405cd92b0a51d8f7ce04Fixed the memory bug.editcomponents/eam/src/physics/cam/subcol_SILHS.F90.gitmodulescomponents/eam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.cshexternals/scorpio_classiccomponents/homme/src/share/control_mod.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcimecomponents/eam/src/physics/cam/micro_mg2_0.F90components/eam/src/physics/cam/micro_p3.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlexternals/scorpiocime_config/config_grids.xmltau_clean_anvil.cshrun_silhs_anvil_gust_wP3.csh7a689e5f2434269994cc10014026321f22a327621620093385000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe made some code changes to get these runs in Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 1) shut off the detrainment scheme in clubb_intr.F90, 2) reduce v_qit=v_nit by 2 in micro_p3.F90 2021-05-03 20:56:25 -05007a689e5f2434269994cc10014026321f22a32762We made some code changes to get these runs in Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 1) shut off the detrainment scheme in clubb_intr.F90, 2) reduce v_qit=v_nit by 2 in micro_p3.F90edit.gitmoduleseditcimeeditexternals/scorpio_classiceditrun_silhs_anvil_gust.csheditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/homme/src/share/control_mod.F90editcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmledittau_clean_anvil.csheditcomponents/eam/src/physics/cam/micro_mg2_0.F90editexternals/scorpioeditcime_config/config_grids.xmleditrun_silhs_anvil_gust_wP3.csheditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/src/physics/cam/clubb_intr.F90NGD_wP3.csh2dd021dec02bae3be06684370c232522d99e86fc1620093892000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnNGD_wP3.csh is the new script for Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 2021-05-03 21:04:52 -05002dd021dec02bae3be06684370c232522d99e86fcNGD_wP3.csh is the new script for Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272.addNGD_wP3.cshNGD_wP3.csh606ff8db2fcdbb5c723f977e903fd10ba8c8d5f21620094089000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnC_invrs_tau_N2_wpxp_thresh = 2.3 for run D in Issue 36,https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 2021-05-03 21:08:09 -0500606ff8db2fcdbb5c723f977e903fd10ba8c8d5f2C_invrs_tau_N2_wpxp_thresh = 2.3 for run D in Issue 36,https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272.editNGD_wP3.cshcimecomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F90f7ef7dbda657dca04e50ab0e05d11db03967b2691620343908000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of uninitialized memory when P3 is used. 2021-05-06 18:31:48 -0500f7ef7dbda657dca04e50ab0e05d11db03967b269Getting rid of uninitialized memory when P3 is used.deletecimeeditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90607a98dd78f67d169777076a589d993be01480d71620346255000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdditional correction to go along with the previous commit. 2021-05-06 19:10:55 -0500607a98dd78f67d169777076a589d993be01480d7Additional correction to go along with the previous commit.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3.F90f4bc960c6ff8851652d4126ebc540c462a3160ff1620550566000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 We set Vqit=Vqit*0.4, Vnit=Vnit*0.4. Result can be found in run [E](https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/P3_0504_ANN/2D.htm). 2021-05-09 16:56:06 +0800f4bc960c6ff8851652d4126ebc540c462a3160ffUpdate micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3.F90b416fc2584c383b8920c75fe26f4931079dce7881620691598000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am officially committing the official fix to the memory bug that has plagued us for a month (and actually, it's been around since we merged in P3 microphysics). 2021-05-10 19:06:38 -0500b416fc2584c383b8920c75fe26f4931079dce788I am officially committing the official fix to the memory bug thateditcomponents/eam/src/physics/cam/micro_p3.F90.gitmodules9a8cb006b14d7db443f1c456e12e7b2b77c349fa1620794357000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe path to cime in .gitmodules was not correct. 2021-05-11 23:39:17 -05009a8cb006b14d7db443f1c456e12e7b2b77c349faThe path to cime in .gitmodules was not correct.edit.gitmodulescomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/check_energy.F90components/eam/src/physics/cam/subcol_SILHS.F90d502ec5f4c304bb550c380f01359465b8a3185521620849572000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMopping up after the recent merge of the master. This version of the code actually runs now ... 2021-05-12 14:59:32 -0500d502ec5f4c304bb550c380f01359465b8a318552Mopping up after the recent merge of the master. This version of the code actually runs now ...editcomponents/eam/src/physics/cam/check_energy.F90editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlcomponents/eam/bld/namelist_files/use_cases/2010_P3_control.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/build-namelistcomponents/elm/bld/namelist_files/use_cases/2010_P3_control.xml7c28cc33648c4319eb3529e004a038bcacee040d1620850591000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding F2010SC5-P3 compset 2021-05-12 15:16:31 -05007c28cc33648c4319eb3529e004a038bcacee040dAdding F2010SC5-P3 compseteditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmladdcomponents/eam/bld/namelist_files/use_cases/2010_P3_control.xmleditcomponents/eam/bld/build-namelistaddcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmleditcomponents/eam/cime_config/config_compsets.xmladdcomponents/elm/bld/namelist_files/use_cases/2010_P3_control.xmleditcomponents/eam/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xml297ace756f54bcad178c9ef8955a6e49f0ad9c121620850703000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd CO2 mixing ratio to be consistent with CMIP6 compset 2021-05-12 15:18:23 -0500297ace756f54bcad178c9ef8955a6e49f0ad9c12Add CO2 mixing ratio to be consistent with CMIP6 compseteditcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csheb7f15d93fdc4a7c9bffe8fd3ab614e39d266cfb1620852204000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd run script for Compy; ne120 cld_macmic_num_steps = 6 2021-05-12 15:43:24 -0500eb7f15d93fdc4a7c9bffe8fd3ab614e39d266cfbAdd run script for Compy; ne120 cld_macmic_num_steps = 6editcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmladdrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshaddrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshbc36d2e7ba839dd6b42a5b23b7756bde6fad9e711620852324000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduComment-out the explicit physical setting that are applied through the compset 2021-05-12 15:45:24 -0500bc36d2e7ba839dd6b42a5b23b7756bde6fad9e71Comment-out the explicit physical setting that are applied through the compseteditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csheditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshREPLAY/run_e3sm_anvil_gust.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csh05d54c1e4ffbe46f7f6c6fc7ec093f9784e8c8dc1620852508000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd/remove IC for run script 2021-05-12 15:48:28 -050005d54c1e4ffbe46f7f6c6fc7ec093f9784e8c8dcAdd/remove IC for run scripteditREPLAY/run_e3sm_anvil_gust.csheditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshREPLAY/run_e3sm_anvil_gust.csh252bd0a3f0419762251ab61d6528301f0ec1ded11620852647000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving gibberish added during the most recent cherry-pick merge. 2021-05-12 15:50:47 -0500252bd0a3f0419762251ab61d6528301f0ec1ded1Removing gibberish added during the most recent cherry-pick merge.editREPLAY/run_e3sm_anvil_gust.cshcomponents/eam/src/physics/cam/micro_p3.F9019a09e9f8919cd47f02ab7082d9dd9aa2da4288b1620893240000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding the KK-2000/Accretion tuning params 2021-05-13 03:07:20 -050019a09e9f8919cd47f02ab7082d9dd9aa2da4288bAdding the KK-2000/Accretion tuning paramseditcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/nucleate_ice.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3_utils.F90components/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/build-namelist38113ba9ebdd07d48f4d15a5920901639888319b1620893342000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduP3 + Cooper; Adding new flag to control the usage of Cooper scheme, while disable the Meyers scheme in <nucleate_ice.F90> 2021-05-13 03:09:02 -050038113ba9ebdd07d48f4d15a5920901639888319bP3 + Cooper; Adding new flag to control the usage of Cooper scheme, while disable the Meyers scheme in <nucleate_ice.F90>editcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3_utils.F90editcomponents/eam/src/physics/cam/nucleate_ice.F90NGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_prod_run.csh8f939b692241d5f92f5723695f54d5ab74f8b3ef1621194714000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting new runscripts 2021-05-16 14:51:54 -05008f939b692241d5f92f5723695f54d5ab74f8b3efCommitting new runscriptsaddNGD_wP3_1deg_prod_run.cshaddNGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_prod_run.csha87cb67fae315c98e394f460843ed6c163deb4b81621194953000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the setting of CLUBB stats output variables from the runscript since they aren't necessary here. 2021-05-16 14:55:53 -0500a87cb67fae315c98e394f460843ed6c163deb4b8Removing the setting of CLUBB stats output variables from the runscripteditNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run.csh269c356720246506645414494dc5b9983fc8c1cb1621195692000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated run script 2021-05-16 15:08:12 -0500269c356720246506645414494dc5b9983fc8c1cbUpdated run scripteditNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_prod_run.cshaa1046ffdc9bbd8886b3b5cba7a2cda17d9934a71621900319000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing some small changes to my 1 degree run scripts. 2021-05-24 18:51:59 -0500aa1046ffdc9bbd8886b3b5cba7a2cda17d9934a7I am committing some small changes to my 1 degree run scripts.editNGD_wP3_1deg_prod_run.csheditNGD_wP3_1deg_full_stats.cshremap/make_climo.pyremap/function_cal_mean.pyremap/remap_ne30.cshff3e9643384a9a97a1e647503f656a0f59e4bad11621901297000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added "seasonally continuous" and "seasonally discontinuous" functionality to the post-processing scripts. 2021-05-24 19:08:17 -0500ff3e9643384a9a97a1e647503f656a0f59e4bad1I added "seasonally continuous" and "seasonally discontinuous" functionalityeditremap/make_climo.pyeditremap/function_cal_mean.pyeditremap/remap_ne30.cshNGD_wP3_0p25deg_prod_run.cshcd340a09d68a5cf38eae29b1a484e786eabd995b1621958967000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the run script for quarter degree production runs. 2021-05-25 11:09:27 -0500cd340a09d68a5cf38eae29b1a484e786eabd995bI am adding the run script for quarter degree production runs.addNGD_wP3_0p25deg_prod_run.cshcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/turbulent_adv_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/stats_zm_module.F90components/eam/src/physics/clubb/sigma_sqd_w_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/clubb/saturation.F90components/eam/src/physics/clubb/calc_pressure.F90components/eam/src/physics/clubb/stats_clubb_utilities.F90components/eam/src/physics/silhs/math_utilities.F90components/eam/src/physics/clubb/clip_explicit.F90components/eam/src/physics/clubb/diagnose_correlations_module.F90components/eam/src/physics/clubb/calendar.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/surface_varnce_module.F90components/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/fill_holes.F90components/eam/src/physics/clubb/precipitation_fraction.F90components/eam/src/physics/silhs/silhs_importance_sample_module.F90components/eam/src/physics/clubb/sfc_varnce_module.F90components/eam/src/physics/silhs/est_kessler_microphys_module.F90components/eam/src/physics/clubb/lapack_wrap.F90components/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/file_functions.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/output_netcdf.F90components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90components/eam/src/physics/clubb/stats_type_utilities.F90components/eam/src/physics/clubb/new_pdf.F90components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/pdf_utilities.F90components/eam/src/physics/clubb/stats_variables.F90components/eam/src/physics/clubb/input_reader.F90components/eam/src/physics/clubb/output_grads.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/corr_varnce_module.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/sponge_layer_damping.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/new_hybrid_pdf_main.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/clubb/numerical_check.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/pos_definite_module.F90components/eam/src/physics/silhs/transform_to_pdf_module.F90components/eam/src/physics/clubb/interpolation.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/matrix_operations.F909dd78e7a7af311288eded135e21a7c5fbeb8e1f51622235032000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS to version b0feee8 from May 27, 2021. 2021-05-28 15:50:32 -05009dd78e7a7af311288eded135e21a7c5fbeb8e1f5I updated the version of CLUBB and SILHS to version b0feee8 from May 27, 2021.editcomponents/eam/src/physics/clubb/new_pdf.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90editcomponents/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/silhs/math_utilities.F90editcomponents/eam/src/physics/clubb/saturation.F90editcomponents/eam/src/physics/clubb/calendar.F90editcomponents/eam/src/physics/clubb/pos_definite_module.F90editcomponents/eam/src/physics/clubb/numerical_check.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/eam/src/physics/silhs/transform_to_pdf_module.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/sigma_sqd_w_module.F90editcomponents/eam/src/physics/clubb/calc_pressure.F90deletecomponents/eam/src/physics/clubb/surface_varnce_module.F90editcomponents/eam/src/physics/silhs/output_2D_samples_module.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/clip_explicit.F90editcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F90editcomponents/eam/src/physics/clubb/sponge_layer_damping.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/clubb/output_netcdf.F90addcomponents/eam/src/physics/clubb/sfc_varnce_module.F90editcomponents/eam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/eam/src/physics/clubb/pdf_utilities.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/input_reader.F90editcomponents/eam/src/physics/clubb/matrix_operations.F90editcomponents/eam/src/physics/clubb/interpolation.F90editcomponents/eam/src/physics/clubb/precipitation_fraction.F90editcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/corr_varnce_module.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/clubb/stats_zm_module.F90editcomponents/eam/src/physics/clubb/lapack_wrap.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/eam/src/physics/clubb/fill_holes.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/output_grads.F90editcomponents/eam/src/physics/clubb/stats_type_utilities.F90editcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90editcomponents/eam/src/physics/clubb/file_functions.F90components/eam/src/physics/cam/subcol_SILHS.F908006e05af6e10c46186357043f362722854c10e31622276191000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA by-hand redo of commit 814dc04 to the clubb_silhs_devel branch on Feb 4, 2021. 2021-05-29 03:16:31 -05008006e05af6e10c46186357043f362722854c10e3A by-hand redo of commit 814dc04 to the clubb_silhs_devel branch on Feb 4, 2021.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90bb485f794c31e3a94f59f11d2dd51bf90824083e1622575146000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a hand-merge of commit 9b7b8b6 to the clubb_silhs_devel branch on March 15, 2021. 2021-06-01 14:19:06 -0500bb485f794c31e3a94f59f11d2dd51bf90824083eThis is a hand-merge of commit 9b7b8b6 to the clubb_silhs_devel branch on March 15, 2021.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F909ae57fd27d599a1ca1fcc4e3e011c9975d7d01bf1622578621000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a hand re-do of commit e708e6e to the clubb_silhs_devel branch on March 15, 2021. 2021-06-01 15:17:01 -05009ae57fd27d599a1ca1fcc4e3e011c9975d7d01bfThis is a hand re-do of commit e708e6e to the clubb_silhs_devel brancheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90273ec1f9795db690ffb6e658d39cb5f98b49b7301622582081000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand redo of commit 2f1647c to the clubb_silhs_devel branch that was originally made on April 8, 2021. 2021-06-01 16:14:41 -0500273ec1f9795db690ffb6e658d39cb5f98b49b730This is a by-hand redo of commit 2f1647c to the clubb_silhs_devel brancheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F9054d8d523805ec14d0df4ae6969d47756502b79f71622582653000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA by-hand redo of commit b4fd9aa to the clubb_silhs_devel branch from April 22, 2021. 2021-06-01 16:24:13 -050054d8d523805ec14d0df4ae6969d47756502b79f7A by-hand redo of commit b4fd9aa to the clubb_silhs_devel branch fromeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90e80f9ac2a82b19b80adc3e43de277a84869b6c761622585084000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand cherry-pick of commit 0af8b9a (to the clubb_silhs_devel branch) on April 22, 2021. 2021-06-01 17:04:44 -0500e80f9ac2a82b19b80adc3e43de277a84869b6c76This is a by-hand cherry-pick of commit 0af8b9a (to the clubb_silhs_develeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90ef9f52b81079e6e4768127e70268f8bdf9c93e171622586824000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit f3d5061 that was made to the clubb_silhs_devel branch on April 23, 2021. 2021-06-01 17:33:44 -0500ef9f52b81079e6e4768127e70268f8bdf9c93e17I am committing a by-hand cherry-pick of commit f3d5061 that was made to theeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F900c96b5b7eb3c3a419786f6192bdbb083398daa1a1622754530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of revision 1f63abb from April 29, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 16:08:50 -05000c96b5b7eb3c3a419786f6192bdbb083398daa1aI am committing a by-hand cherry-pick of revision 1f63abb from April 29, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F905182ef3e218491981d193e9be690275fce77614c1622755200000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand cherry-pick of commit 853a408 from May 4, 2021, which was made to the clubb_silhs_devel branch. 2021-06-03 16:20:00 -05005182ef3e218491981d193e9be690275fce77614cThis is a by-hand cherry-pick of commit 853a408 from May 4, 2021, whicheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F905ff3c1ebf66d0d665564315c500fbb005841cfaa1622756178000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 85ff2e6 from May 4, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 16:36:18 -05005ff3c1ebf66d0d665564315c500fbb005841cfaaI am committing a by-hand cherry-pick of commit 85ff2e6 from May 4, 2021,editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/clubb_intr.F90897ccc9b3a79dc4438622492892520a92d92f4301622756834000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 33d4507 from May 4, 2021, which was orignally made to the clubb_silhs_devel branch. 2021-06-03 16:47:14 -0500897ccc9b3a79dc4438622492892520a92d92f430I am committing a by-hand cherry-pick of commit 33d4507 from May 4, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F901c0cd0634dd4c4529af50f911100ae4cd0d206741622757131000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 3482c3a from March 7, 2021, which was made to the clubb_silhs_devel branch. 2021-06-03 16:52:11 -05001c0cd0634dd4c4529af50f911100ae4cd0d20674I am committing a by-hand cherry-pick of commit 3482c3a from March 7, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90a68826416a9ca272f28523411eb860b116f4a96b1622757367000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis by-hand cherry-pick is actually 2 cherry-picks for the price of 1!!! Both commit 6967709 from February 27, 2021 and commit 021e06b5 from January 26, 2021 are included in this commit. Both of these commits were originally made to the clubb_silhs_devel branch. 2021-06-03 16:56:07 -0500a68826416a9ca272f28523411eb860b116f4a96bThis by-hand cherry-pick is actually 2 cherry-picks for the price of 1!!!editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/namelist_definition.xml3d21e23d77ec3a740403d15729375135691183571622759074000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit ad5378e from May 12, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 17:24:34 -05003d21e23d77ec3a740403d1572937513569118357I am committing a by-hand cherry-pick of commit ad5378e from May 12, 2021, whicheditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/namelist_files/namelist_definition.xml1bb9544be93dc8877396de84d4f3b9e50d6e31dc1622759417000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging clubb_up2_vp2_factor to clubb_up2_sfc_coef to correspond with recent CLUBB code changes. 2021-06-03 17:30:17 -05001bb9544be93dc8877396de84d4f3b9e50d6e31dcChanging clubb_up2_vp2_factor to clubb_up2_sfc_coef to correspond witheditcomponents/eam/bld/namelist_files/namelist_definition.xmlNGD_wP3.cshNGD_wP3_1deg_full_stats.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_1deg_prod_run.cshrun_silhs_anvil_gust.cshrun_silhs_anvil_gust_wP3.cshd85ef240b60462705e851a4b85a34d7fe2d47c301622760791000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing some of the run scripts to reflect a recent name change in CLUBB. 2021-06-03 17:53:11 -0500d85ef240b60462705e851a4b85a34d7fe2d47c30I am changing some of the run scripts to reflect a recent name change in CLUBB.editNGD_wP3.csheditrun_silhs_anvil_gust.csheditNGD_wP3_0p25deg_prod_run.csheditNGD_wP3_1deg_prod_run.csheditNGD_wP3_1deg_full_stats.csheditrun_silhs_anvil_gust_wP3.cshNGD_wP3.cshNGD_wP3_1deg_full_stats.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_1deg_prod_run.cshrun_silhs_anvil_gust.cshrun_silhs_anvil_gust_wP3.csh13db57d1e03643c77386e23622d4ca8a83ab47da1622761426000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating runscripts based on a recent name change in CLUBB, where clubb_up2_vp2_factor was changed to clubb_up2_sfc_coef. 2021-06-03 18:03:46 -050013db57d1e03643c77386e23622d4ca8a83ab47daI am updating runscripts based on a recent name change in CLUBB, whereeditNGD_wP3.csheditNGD_wP3_0p25deg_prod_run.csheditNGD_wP3_1deg_full_stats.csheditrun_silhs_anvil_gust.csheditNGD_wP3_1deg_prod_run.csheditrun_silhs_anvil_gust_wP3.cshcomponents/eam/src/physics/cam/subcol_SILHS.F901219bb5b4846ae9d74481329150e1443127bd6fd1622763450000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed some whoopsies 2021-06-03 18:37:30 -05001219bb5b4846ae9d74481329150e1443127bd6fdFixed some whoopsieseditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90f9f518303282be72067c2a5eea625e3ed270410f1624403415000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing the bug that reorded the column/subcolumn indices in state_sc. This commit puts them back the way they were so that the code can function again. 2021-06-22 18:10:15 -0500f9f518303282be72067c2a5eea625e3ed270410fI am fixing the bug that reorded the column/subcolumn indices in state_sc. Thiseditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/elm/src/biogeophys/BalanceCheckMod.F9069249e6b8405f2b912fd827af2afdf64c08a01091624945953000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the tolerance on the snow balance error check in the land module so that SILHS could run to completion with the PG2 grid. 2021-06-29 00:52:33 -050069249e6b8405f2b912fd827af2afdf64c08a0109I changed the tolerance on the snow balance error check in the land moduleeditcomponents/elm/src/biogeophys/BalanceCheckMod.F90cime_config/machines/config_machines.xmle38dc8094ba64301abbda46cd2f1b6eb83b894801625115319000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd module load per5-extras for cori machines 2021-06-30 23:55:19 -0500e38dc8094ba64301abbda46cd2f1b6eb83b89480Add module load per5-extras for cori machineseditcime_config/machines/config_machines.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_utils.F90components/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6_piAEROSOL.xmlcomponents/eam/bld/build-namelist5bc0d9c61f24819c586d7e06d642e756d90600121625188001000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduP3 update and new compsets for AMIP simulations P3 updates include new lookup table and bug fixes. Additional output fields are made available for offline arm radar simulator. New AMIP compsets are F20TR-P3 for transient AMIP simulations, and companion F20TR-P3-piAEROSOL for estimation of aerosol effective radiative forcing. EAM's build-namelist is also updated to support P3 compsets with compatibility for MG2 microphysics. [non-BFB] for all configuration using P3 microphysics. Conflicts: components/eam/bld/namelist_files/namelist_defaults_eam.xml components/eam/src/physics/cam/micro_p3.F90 components/eam/src/physics/cam/micro_p3_interface.F90 All the conflicts have been resolved. 2021-07-01 20:06:41 -05005bc0d9c61f24819c586d7e06d642e756d9060012P3 update and new compsets for AMIP simulationseditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/elm/cime_config/config_component.xmladdcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6_piAEROSOL.xmleditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/src/physics/cam/micro_p3_utils.F90editcomponents/eam/bld/build-namelistrun.F20TR-P3.template.sh42754f9c30c94d47b51c95ec6197c158ca7537571625188068000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd simplied v2 run script template run.F20TR-P3.template.sh 2021-07-01 20:07:48 -050042754f9c30c94d47b51c95ec6197c158ca753757Add simplied v2 run script template run.F20TR-P3.template.shaddrun.F20TR-P3.template.shrun.F20TR-P3.template.shf536041f23dce9c0535b8e9dcce8476e6ba2a99c1625188089000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange pe-layout to 64x2 on 338 nodes for ne120 on cori-knl 2021-07-01 20:08:09 -0500f536041f23dce9c0535b8e9dcce8476e6ba2a99cChange pe-layout to 64x2 on 338 nodes for ne120 on cori-knleditrun.F20TR-P3.template.shcomponents/eam/src/physics/cam/micro_p3_interface.F90ccb5a0e4bb3af662766b44a8dfdf7f7843e3ca2b1625208425000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a typo and commented out a line to get the code to compile and run! 2021-07-02 01:47:05 -0500ccb5a0e4bb3af662766b44a8dfdf7f7843e3ca2bFixed a typo and commented out a line to get the code to compile and run!editcomponents/eam/src/physics/cam/micro_p3_interface.F90NGD_wP3_0p25deg_prod_run.csh7490621f2f921ed003b3112428b30862b1764fd31626376097000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated to use the correct finidat and fsurdat for a 0.25 degree production run. 2021-07-15 14:08:17 -05007490621f2f921ed003b3112428b30862b1764fd3Updated to use the correct finidat and fsurdat for a 0.25 degree production run.editNGD_wP3_0p25deg_prod_run.cshNGD_wP3.cshNGD_wP3_1deg_prod_run.cshcomponents/mpas-sourcecomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F9066665b3434d1a02aa4923bda39653fb28e4fdff71626615519000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnThis run repeat the [simulation](https://github.com/larson-group/e3sm/issues/36#issuecomment-881690516). Parameters setting is suggested by the tunner. 2021-07-18 08:38:39 -050066665b3434d1a02aa4923bda39653fb28e4fdff7This run repeat the [simulation](https://github.com/larson-group/e3sm/issues/36#issuecomment-881690516). Parameters setting is suggested by the tunner.editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editNGD_wP3_1deg_prod_run.csheditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/mpas-sourceeditNGD_wP3.cshcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmlNGD_wP3_1deg_prod_run.cshbb22f888e7867ce72231988ee9cb18a6b781e6d91627096158000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnUpdate the Machine files for Anvil. Issue #36. 2021-07-23 22:09:18 -0500bb22f888e7867ce72231988ee9cb18a6b781e6d9Update the Machine files for Anvil. Issue #36.editcime_config/machines/config_machines.xmleditNGD_wP3_1deg_prod_run.csheditcime_config/machines/config_compilers.xmlNGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_0p25deg_prod_run_anvil.cshc5d85b35a01185881c4bd144fdd8083dd35bacbd1627426536000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMake two different production run files for the 0.25 degree simulations: one for Anvil and one for Cori. 2021-07-27 15:55:36 -0700c5d85b35a01185881c4bd144fdd8083dd35bacbdMake two different production run files for the 0.25 degree simulations:addNGD_wP3_0p25deg_prod_run_cori.cshdeleteNGD_wP3_0p25deg_prod_run.cshaddNGD_wP3_0p25deg_prod_run_anvil.cshNGD_wP3_1deg_prod_run.csh8539ebbd497eef90374a010d283dbf6cf4e3be531627974921000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run.csh configuration 0706 with vqit=0.45 to branch b0feee8, https://github.com/larson-group/e3sm/issues/36#issuecomment-891440909 2021-08-03 15:15:21 +08008539ebbd497eef90374a010d283dbf6cf4e3be53Update NGD_wP3_1deg_prod_run.csheditNGD_wP3_1deg_prod_run.cshcomponents/eam/src/physics/cam/micro_p3.F908b25546a4c1a8ebf91e82d9bdd04bec973555f331627975132000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 Configuration 0706 with vqit=0.45 to branch b0feee8. 2021-08-03 15:18:52 +08008b25546a4c1a8ebf91e82d9bdd04bec973555f33Update micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90NGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3.cshNGD_wP3_1deg_prod_run.cshNGD_wP3_0p25deg_prod_run_anvil.csh062a511f3e2650a7a73e374d1c509b465c48fc621628022999000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduReadying scripts for production runs using the final tuning. 2021-08-03 15:36:39 -0500062a511f3e2650a7a73e374d1c509b465c48fc62Readying scripts for production runs using the final tuning.editNGD_wP3_0p25deg_prod_run_cori.csheditNGD_wP3_1deg_prod_run.csheditNGD_wP3.csheditNGD_wP3_0p25deg_prod_run_anvil.cshNGD_wP3_1deg_prod_run.cshb545439ec48ac6ed3a6078ebc76cc7e8df0fabc51628023071000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRenaming the 1 degree production run script to specify use on Anvil. 2021-08-03 15:37:51 -0500b545439ec48ac6ed3a6078ebc76cc7e8df0fabc5Renaming the 1 degree production run script to specify use on Anvil.deleteNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run_anvil.cshd1980afc6629005fd70f508c7a97694faa792c0f1628023338000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNew file name 2021-08-03 15:42:18 -0500d1980afc6629005fd70f508c7a97694faa792c0fNew file nameaddNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.cshe8b7f3de56d10f9d21ab0484dd43537405478e1f1628027608000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for new AMIP run script, plus updated stats on 1 deg run script. 2021-08-03 16:53:28 -0500e8b7f3de56d10f9d21ab0484dd43537405478e1fUpdated for new AMIP run script, plus updated stats on 1 deg run script.addNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.csh14ab96b3875baa6cebfb2b4b96569e08bff728231628029281000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the offensive ZM variables out of the fincl5 list, allowing the simulations to run again. 2021-08-03 17:21:21 -050014ab96b3875baa6cebfb2b4b96569e08bff72823Removing the offensive ZM variables out of the fincl5 list, allowingeditNGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh31bd75b9006640d0e4bee742605432d149081e4e1628030144000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a special runscript for AMIP sstplus4K 2021-08-03 17:35:44 -050031bd75b9006640d0e4bee742605432d149081e4eAdded a special runscript for AMIP sstplus4KaddNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh2e433a96af52d5b78b20bbe07eb5b99a3b0729bd1628032413000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange the dang name! 2021-08-03 18:13:33 -05002e433a96af52d5b78b20bbe07eb5b99a3b0729bdChange the dang name!editNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csh56fcae343a7cde5c8189f73faba2e82f90891b041628057462000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run_anvil.csh 2021-08-04 14:11:02 +080056fcae343a7cde5c8189f73faba2e82f90891b04Update NGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_0p25deg_prod_run_anvil.csheae9e89d98b522b3a509e13a3ed6a047568475f31628060750000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging clubb_rainevap_turb to false. 2021-08-04 02:05:50 -0500eae9e89d98b522b3a509e13a3ed6a047568475f3Changing clubb_rainevap_turb to false.editNGD_wP3_0p25deg_prod_run_anvil.csheditNGD_wP3_0p25deg_prod_run_cori.csheditNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshf09e7859670151103e837fdf1bab2ffb05a398791628111796000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving finidat (initial condition files) for the AMIP runs, following Chris Terai's e-mail. 2021-08-04 16:16:36 -0500f09e7859670151103e837fdf1bab2ffb05a39879Removing finidat (initial condition files) for the AMIP runs, followingeditNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_F2010-CTL_prod_run_anvil.csha9b3c135bafaac9a4bf1998a9d567e7fd36b18c91628115729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding the runscript for the 25 month control run for aerosol production. 2021-08-04 17:22:09 -0500a9b3c135bafaac9a4bf1998a9d567e7fd36b18c9Adding the runscript for the 25 month control run for aerosol production.addNGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csh23dc5f8e8f15027b3a5f87d0db4abdea0ae04a561628119132000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded the script for the active end of the Aerosol-Cloud Interaction Simulation. 2021-08-04 18:18:52 -050023dc5f8e8f15027b3a5f87d0db4abdea0ae04a56Added the script for the active end of the Aerosol-Cloud InteractionaddNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshremap/remap_ne30pg2.csh696eb5674bf5867d1201671a71b0724cb61eb3291628197221000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding Zhun's remap_ne30pg2.csh script to the remap directory. 2021-08-05 16:00:21 -0500696eb5674bf5867d1201671a71b0724cb61eb329I am adding Zhun's remap_ne30pg2.csh script to the remap directory.addremap/remap_ne30pg2.cshremap/make_climo.pyremap/remap_ne30pg2.csh0afe5e6ae16506c6fddca4a9b4691b1481734c441628197707000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed an error 2021-08-05 16:08:27 -05000afe5e6ae16506c6fddca4a9b4691b1481734c44Fixed an erroreditremap/remap_ne30pg2.csheditremap/make_climo.pyNGD_wP3_1deg_prod_sens.csh1a50240252d682f474e62fb5b3a6a28bda42c8611628493420000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd files via upload We create a new script that can prepare and run the default run and all sensitivity runs automatically. https://github.com/larson-group/e3sm/issues/36#issuecomment-891447115 2021-08-09 15:17:00 +08001a50240252d682f474e62fb5b3a6a28bda42c861Add files via uploadaddNGD_wP3_1deg_prod_sens.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshpostprocessing/run_e3sm_diags.pyNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csh4818f926042bce92955859e2b0b3c58881da6eeb1628700554000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting temporary changes 2021-08-11 11:49:14 -05004818f926042bce92955859e2b0b3c58881da6eebCommitting temporary changeseditNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csheditpostprocessing/run_e3sm_diags.pyeditNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csha58714d8627e73889b42f0f921d7f479ba2e99d51628700719000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run_anvil.csh 2021-08-11 11:51:59 -0500a58714d8627e73889b42f0f921d7f479ba2e99d5Update NGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.csh050556061d5b42f3e07afab2177958580e9b54311628700804000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_AMIP_prod_run_anvil.csh 2021-08-11 11:53:24 -0500050556061d5b42f3e07afab2177958580e9b5431Update NGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshe2f12b7b200f656f69231dd7c889668f0740094d1628700923000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh 2021-08-11 11:55:23 -0500e2f12b7b200f656f69231dd7c889668f0740094dUpdate NGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshcomponents/eam/src/physics/cam/micro_p3.F900a251c8c220734cc8065f29a643107d11ff6cbb71628701099000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 2021-08-11 11:58:19 -05000a251c8c220734cc8065f29a643107d11ff6cbb7Update micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90NGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshda11cc052eace5e32dc802899425f6d6d9247cdd1628878073000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_F2010-CTL_prod_run_anvil.csh 2021-08-13 13:07:53 -0500da11cc052eace5e32dc802899425f6d6d9247cddUpdate NGD_wP3_1deg_F2010-CTL_prod_run_anvil.csheditNGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csha6a7f670f1a042d0f06eb26232cb79d2ce3729ed1628878141000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csh 2021-08-13 13:09:01 -0500a6a7f670f1a042d0f06eb26232cb79d2ce3729edUpdate NGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csheditNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshNGD_wP3_1deg_prod_sens.csh446330d55d1bd891c15b3b1d5a3ef61b2bab27b91629008104000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_sens.csh We make `micro_vqit` tunable. https://github.com/larson-group/e3sm/issues/36#issuecomment-899001464 2021-08-15 14:15:04 +0800446330d55d1bd891c15b3b1d5a3ef61b2bab27b9Update NGD_wP3_1deg_prod_sens.csheditNGD_wP3_1deg_prod_sens.cshcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/turbulent_adv_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/stats_zm_module.F90components/eam/src/physics/clubb/error_code.F90components/eam/src/physics/clubb/clip_semi_implicit.F90components/eam/src/physics/clubb/code_timer_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/clubb/saturation.F90components/eam/src/physics/clubb/stats_clubb_utilities.F90components/eam/src/physics/clubb/calc_pressure.F90components/eam/src/physics/clubb/clip_explicit.F90components/eam/src/physics/clubb/new_tsdadg_pdf.F90components/eam/src/physics/clubb/diagnose_correlations_module.F90components/eam/src/physics/clubb/calendar.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/endian.F90components/eam/src/physics/clubb/parameters_model.F90components/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/fill_holes.F90components/eam/src/physics/clubb/precipitation_fraction.F90components/eam/src/physics/clubb/stats_sfc_module.F90components/eam/src/physics/clubb/stats_lh_zt_module.F90components/eam/src/physics/clubb/sfc_varnce_module.F90components/eam/src/physics/clubb/lapack_wrap.F90components/eam/src/physics/clubb/Skx_module.F90components/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/file_functions.F90components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/output_netcdf.F90components/eam/src/physics/clubb/advance_xp3_module.F90components/eam/src/physics/clubb/stats_type_utilities.F90components/eam/src/physics/clubb/new_pdf.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/LY93_pdf.F90components/eam/src/physics/clubb/stats_lh_sfc_module.F90components/eam/src/physics/clubb/stats_variables.F90components/eam/src/physics/clubb/input_reader.F90components/eam/src/physics/clubb/output_grads.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/corr_varnce_module.F90components/eam/src/physics/clubb/stats_rad_zm_module.F90components/eam/src/physics/clubb/sponge_layer_damping.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/mt95.f90components/eam/src/physics/clubb/new_hybrid_pdf_main.F90components/eam/src/physics/clubb/stats_rad_zt_module.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/clubb/numerical_check.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/new_pdf_main.F90components/eam/src/physics/clubb/diffusion.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/pos_definite_module.F90components/eam/src/physics/clubb/mean_adv.F90components/eam/src/physics/clubb/T_in_K_module.F90components/eam/src/physics/clubb/interpolation.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/matrix_operations.F9080245b69e443e81bfd0cc69c1836ddb07200d3b91637185344000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the version of CLUBB and SILHS used in E3SM to version 1c77ed3 from November 15, 2021. 2021-11-17 15:42:24 -060080245b69e443e81bfd0cc69c1836ddb07200d3b9I am updating the version of CLUBB and SILHS used in E3SM toeditcomponents/eam/src/physics/clubb/input_reader.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/clubb/stats_sfc_module.F90editcomponents/eam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/eam/src/physics/clubb/pos_definite_module.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/sponge_layer_damping.F90editcomponents/eam/src/physics/clubb/fill_holes.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/lapack_wrap.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/clubb/saturation.F90editcomponents/eam/src/physics/clubb/output_netcdf.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/calendar.F90editcomponents/eam/src/physics/clubb/stats_rad_zt_module.F90editcomponents/eam/src/physics/clubb/numerical_check.F90editcomponents/eam/src/physics/clubb/stats_lh_sfc_module.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/eam/src/physics/clubb/advance_xp3_module.F90editcomponents/eam/src/physics/clubb/new_pdf_main.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/clubb/LY93_pdf.F90editcomponents/eam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/eam/src/physics/clubb/stats_rad_zm_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/interpolation.F90editcomponents/eam/src/physics/clubb/parameters_model.F90editcomponents/eam/src/physics/silhs/output_2D_samples_module.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/T_in_K_module.F90editcomponents/eam/src/physics/clubb/clip_semi_implicit.F90editcomponents/eam/src/physics/clubb/mean_adv.F90editcomponents/eam/src/physics/clubb/Skx_module.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/precipitation_fraction.F90editcomponents/eam/src/physics/clubb/calc_pressure.F90editcomponents/eam/src/physics/clubb/matrix_operations.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90editcomponents/eam/src/physics/clubb/clip_explicit.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/code_timer_module.F90editcomponents/eam/src/physics/clubb/endian.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/file_functions.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/new_tsdadg_pdf.F90editcomponents/eam/src/physics/clubb/sfc_varnce_module.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/diffusion.F90editcomponents/eam/src/physics/clubb/mt95.f90editcomponents/eam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/eam/src/physics/clubb/new_pdf.F90editcomponents/eam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/eam/src/physics/clubb/stats_type_utilities.F90editcomponents/eam/src/physics/clubb/corr_varnce_module.F90editcomponents/eam/src/physics/clubb/stats_zm_module.F90editcomponents/eam/src/physics/clubb/output_grads.F90editcomponents/eam/src/physics/clubb/error_code.F90editcomponents/eam/src/physics/clubb/stats_lh_zt_module.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F9073d84c48c9426bfa251fa9da34feb0f715bae47a1637187729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMade updates to both clubb_intr.F90 and subcol_SILHS.F90 in order to update the E3SM-CLUBB-SILHS code for version 1c77ed3 of CLUBB from November 15, 2021. 2021-11-17 16:22:09 -060073d84c48c9426bfa251fa9da34feb0f715bae47aMade updates to both clubb_intr.F90 and subcol_SILHS.F90 in ordereditcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_BOMEX.cshnightly_test/nightly_e3sm_scm_RICO.cshe74184ed52c3c9ca495b2d578e68c7b4f686f7b91637190181000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the nightly test run scripts to be consistent with what's found in the current clubb_silhs_devel branch. 2021-11-17 17:03:01 -0600e74184ed52c3c9ca495b2d578e68c7b4f686f7b9I altered the nightly test run scripts to be consistent with what'seditnightly_test/nightly_e3sm_scm_BOMEX.csheditnightly_test/nightly_e3sm_scm_DYCOMSrf01.csheditnightly_test/nightly_e3sm_scm_RICO.cshjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_ne4_silhs.cshjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilee4764d4ccc9ff7f4f1dcfdf2731485a8283381951637190382000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding some additional files that need to be ported over from the current clubb_silhs_devel branch. 2021-11-17 17:06:22 -0600e4764d4ccc9ff7f4f1dcfdf2731485a828338195Adding some additional files that need to be ported over fromaddjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfileaddjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_ne4_silhs.cshcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F904caa54803a26ee1064e20fd4135cfdb581ce2f991637304683000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing compilation bugs. 2021-11-19 00:51:23 -06004caa54803a26ee1064e20fd4135cfdb581ce2f99Fixing compilation bugs.editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F90a0a1613ab741ee785aab12b53185e0c7bf575d5f1637361754000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding ifdef SILHS preprocessor flags around a conditional in subcol_SILHS.F90 to help allow for compilation when -DSILHS is turned off. 2021-11-19 16:42:34 -0600a0a1613ab741ee785aab12b53185e0c7bf575d5fAdding ifdef SILHS preprocessor flags around a conditional in subcol_SILHS.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90diagnostic_v2_0/analyze_sensitivity_matrix.py7c10cae66009f8f17d94c1f3c4ebaac0ce51c77e1637363087000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded analyze_sensitivity_matrix.py to the diagnostic_v2_0 directory. This file was previously found only in the (old) clubb_silhs_devel branch. 2021-11-19 17:04:47 -06007c10cae66009f8f17d94c1f3c4ebaac0ce51c77eAdded analyze_sensitivity_matrix.py to the diagnostic_v2_0 directory.adddiagnostic_v2_0/analyze_sensitivity_matrix.pycime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml8da91950496adb7af36c5f0d702cb2a5be1d23201637364792000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating config_machines.xml and config_compilers.xml so that they contain all the changes that have been made recently to the (old) clubb_silhs_devel branch. 2021-11-19 17:33:12 -06008da91950496adb7af36c5f0d702cb2a5be1d2320I am updating config_machines.xml and config_compilers.xmleditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/clubb_intr.F902aae3eccbac106aeef9514c8abf6b7e80ff9930d1637703538000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed the bug where clubb_params was reported to have parameters that had values of 0. There was a second, local declaration of clubb_params that needed to be removed when clubb_params became a module variable. 2021-11-23 15:38:58 -06002aae3eccbac106aeef9514c8abf6b7e80ff9930dFixed the bug where clubb_params was reported to have parameters thateditcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_ne4_silhs.cshba623886b19d1bb3e3c061d138f3dc949bdbbb9e1640818293000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange user namelist name from "user_nl_cam" to "user_nl_eam". 2021-12-29 16:51:33 -0600ba623886b19d1bb3e3c061d138f3dc949bdbbb9eChange user namelist name from "user_nl_cam" to "user_nl_eam".editnightly_test/nightly_e3sm_ne4_silhs.cshnightly_test/nightly_e3sm_scm_BOMEX.csh0c23f58d77d9922918d5b25fb1392db25f088f021640820708000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:31:48 -06000c23f58d77d9922918d5b25fb1392db25f088f02Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_BOMEX.cshnightly_test/nightly_e3sm_scm_DYCOMSrf01.csh26aea7440d0ae3c1e437f59d0d2980b64c9222e61640820760000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:32:40 -060026aea7440d0ae3c1e437f59d0d2980b64c9222e6Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshbfa71a09b1a72fa06fd3aa25503e6e4c5127feff1640820849000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:34:09 -0600bfa71a09b1a72fa06fd3aa25503e6e4c5127feffChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_RICO.cshcime_config/machines/config_compilers.xmlc99918ee5a320c30300dd289e3de3b5e624b1e301641243985000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the nelson's FFLAGS in config_compilers.xml 2022-01-03 15:06:25 -0600c99918ee5a320c30300dd289e3de3b5e624b1e30Updating the nelson's FFLAGS in config_compilers.xmleditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xml055b469d8873020292fca142c7d77f60440690d51641515116000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Updating the nelson's FFLAGS in config_compilers.xml" This is possibly temporary to allow us to go back to the last state of the compiler flags while we compile with gfortran 8. This reverts commit c99918ee5a320c30300dd289e3de3b5e624b1e30. 2022-01-06 18:25:16 -0600055b469d8873020292fca142c7d77f60440690d5Revert "Updating the nelson's FFLAGS in config_compilers.xml"editcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml382ef495458e95b439d464793de0f24e7aff33a81641943493000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_devel branch. 2022-01-11 17:24:53 -0600382ef495458e95b439d464793de0f24e7aff33a8I am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_develeditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90c9563ef663afe0f6f8ea5241ea892114365885ae1641944304000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler. 2022-01-11 17:38:24 -0600c9563ef663afe0f6f8ea5241ea892114365885aeUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler.editcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/clubb_intr.F90e9362052b2fd593508834067b59c8bb63c3ba8f01642028438000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding w_up_in_cloud to the pbuf, which will eventually allow it to be ported for use in another area of the model. 2022-01-12 17:00:38 -0600e9362052b2fd593508834067b59c8bb63c3ba8f0Adding w_up_in_cloud to the pbuf, which will eventually allow it to be portededitcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F902f2cde7827bf04feabf5c3ecb85b400ab2e9750e1642029037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB). 2022-01-12 17:10:37 -06002f2cde7827bf04feabf5c3ecb85b400ab2e9750eAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB).editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F909df1fbd0716106e791faecd131c982b3ae1802dc1642033579000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev') rather than momentum levels ('ilev'). 2022-01-12 18:26:19 -06009df1fbd0716106e791faecd131c982b3ae1802dcThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev')editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90897a1afcceaf9c03a5e2421c631ebd9d91ec29051642115926000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing some of the statistical output level listings for variable CLUBB variables. In other words, what should be on thermodynamic levels ('lev') vs. what should be on momemtum levels ('ilev'). 2022-01-13 17:18:46 -0600897a1afcceaf9c03a5e2421c631ebd9d91ec2905I am fixing some of the statistical output level listings for variable CLUBBeditcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshnightly_test/nightly_e3sm_scm_BOMEX.csh9cc3523947fc0e16063926af4819366e4415276b1645134909000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01, and RICO) to work on Nelson for the E3SM V2 code. 2022-02-17 15:55:09 -06009cc3523947fc0e16063926af4819366e4415276bI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01,editnightly_test/nightly_e3sm_scm_RICO.csheditnightly_test/nightly_e3sm_scm_BOMEX.csheditnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_scm_ARM97.csh94ef289947968beb12579a7f39b4ecde5cd15f6d1645142742000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd arm_97 case to the Jenkins e3sm_run_gfortran_test 2022-02-17 18:05:42 -060094ef289947968beb12579a7f39b4ecde5cd15f6dAdd arm_97 case to the Jenkins e3sm_run_gfortran_testeditjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_scm_ARM97.cshnightly_test/nightly_e3sm_scm_ARM97.csh418ff2c22e23bba4d3986205e8df83215ed471251645143204000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated the E3SM SCM runscript for ARM 97 for E3SM v2 code. 2022-02-17 18:13:24 -0600418ff2c22e23bba4d3986205e8df83215ed47125Updated the E3SM SCM runscript for ARM 97 for E3SM v2 code.editnightly_test/nightly_e3sm_scm_ARM97.cshnightly_test/nightly_e3sm_scm_ARM97.csh50bb9b393a2114b6ea19b94c4ab94fdf0595f05f1645223514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating the ARM 97 E3SM SCM run script so that it runs with E3SM v2. 2022-02-18 16:31:54 -060050bb9b393a2114b6ea19b94c4ab94fdf0595f05fUpdating the ARM 97 E3SM SCM run script so that it runs witheditnightly_test/nightly_e3sm_scm_ARM97.cshcomponents/eam/src/physics/cam/micro_mg2_0.F90f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da721645224074000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of this hyper-annoying print statement. 2022-02-18 16:41:14 -0600f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72Getting rid of this hyper-annoying print statement.editcomponents/eam/src/physics/cam/micro_mg2_0.F90components/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/Skx_module.F90components/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/sigma_sqd_w_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/constants_clubb.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/stats_variables.F90d2fc66198cfee1f3a7904d91e5ad172da5c036ae1645226486000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the version of CLUBB and SILHS in the brand new future CLUBB-SILHS devel branch to version 7e2a226 from February 17, 2022. 2022-02-18 17:21:26 -0600d2fc66198cfee1f3a7904d91e5ad172da5c036aeI am updating the version of CLUBB and SILHS in the brand new futureeditcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/constants_clubb.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/Skx_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/sigma_sqd_w_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/cam/clubb_intr.F90bc68d98020d155635e77c3978097abc5751db9121645654026000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBringing the branch up-to-date with the changes that needed to be made in order to interface with version 7e2a226 of CLUBB from February 17, 2022. 2022-02-23 16:07:06 -0600bc68d98020d155635e77c3978097abc5751db912Bringing the branch up-to-date with the changes that needed to beeditcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/version_clubb_core.txtc9092a6e71199123e696048843bcf416605ae0b01645802555000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB in the future clubb_silhs_devel branch to be the version as of the close of the day on February 24, 2022. 2022-02-25 09:22:35 -0600c9092a6e71199123e696048843bcf416605ae0b0I updated the version of CLUBB in the future clubb_silhs_devel branch to beeditcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/advance_helper_module.F901f572936bf191bb31671a41f8fe9daedc98bdfb41645853537000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/eam/src/physics/clubb 2022-02-25 23:32:17 -06001f572936bf191bb31671a41f8fe9daedc98bdfb4Raw-copy updating components/eam/src/physics/clubbeditcomponents/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/precipitation_fraction.F908ff93a20f2306d954662162b2565070a0448009c1646199142000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/eam/src/physics/clubb 2022-03-01 23:32:22 -06008ff93a20f2306d954662162b2565070a0448009cRaw-copy updating components/eam/src/physics/clubbeditcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/precipitation_fraction.F90jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile416ecc016b75103c17885956057f93aa56b6db581646262741000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduFixing error where test could not find CXX definition. #46 2022-03-02 17:12:21 -0600416ecc016b75103c17885956057f93aa56b6db58Fixing error where test could not find CXX definition. 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#6060false6013481SUCCESS1645567048560http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/60/grid_class.F90advance_clubb_core_module.F90f1154aed2f15410ec35a99adb03d2d517f9fad2d1643747310000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into zm2zt and zt2zm. larson-group/clubb#972 2022-02-01 14:28:30 -0600f1154aed2f15410ec35a99adb03d2d517f9fad2dPushing column index into zm2zt and zt2zm. larson-group/clubb#972editgrid_class.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90Skx_module.F90932c80e272c18da1ccf51719eed39b370ca459121643751025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into Skx_func and making it a subroutine. larson-group/clubb#972 2022-02-01 15:30:25 -0600932c80e272c18da1ccf51719eed39b370ca45912Pushing column index into Skx_func and making it a subroutine. larson-group/clubb#972editadvance_clubb_core_module.F90editSkx_module.F90sigma_sqd_w_module.F90advance_clubb_core_module.F90grid_class.F90advance_helper_module.F90a3665dbc5e18abd7e8281d753abed2bbb03d8f1c1643762869000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA variety of small loop pushing. larson-group/clubb#972 2022-02-01 18:47:49 -0600a3665dbc5e18abd7e8281d753abed2bbb03d8f1cA variety of small loop pushing. larson-group/clubb#972editadvance_helper_module.F90editadvance_clubb_core_module.F90editgrid_class.F90editsigma_sqd_w_module.F90sigma_sqd_w_module.F907f7db11cab062c725e5fe2787d45f0225e4ba60f1643831947000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed small bug that slipped through because the G_unit tests use nz=1. 2022-02-02 13:59:07 -06007f7db11cab062c725e5fe2787d45f0225e4ba60fFixed small bug that slipped through because the G_unit tests use nz=1.editsigma_sqd_w_module.F90mixing_length.F90advance_clubb_core_module.F90advance_helper_module.F903c97bd65f2133f211f2d8502473f2cf32a025be11643840875000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972 2022-02-02 16:27:55 -06003c97bd65f2133f211f2d8502473f2cf32a025be1Pushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972editmixing_length.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90pdf_parameter_module.F90df7da80153115bfa7df377decb342e4aee4481cf1643927836000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a subroutine that prints that values of all PDF parameters in type pdf_parameter, which is a useful debugging tool. 2022-02-03 16:37:16 -0600df7da80153115bfa7df377decb342e4aee4481cfI added a subroutine that prints that values of all PDF parameters ineditpdf_parameter_module.F90advance_clubb_core_module.F90Skx_module.F90445f590cf1d278eee326fe3a3355fdc0deab0d211643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall changes and a loop push. larson-group/clubb#972 2022-02-03 18:15:33 -0600445f590cf1d278eee326fe3a3355fdc0deab0d21Small changes and a loop push. larson-group/clubb#972editSkx_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c9f575df03cc82bf9e0783bd2608ef27d0b4b6371643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into advance_xm_wpxp. larson-group/clubb#972 2022-02-03 18:15:33 -0600c9f575df03cc82bf9e0783bd2608ef27d0b4b637Pushing loop into advance_xm_wpxp. larson-group/clubb#972editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90sigma_sqd_w_module.F90eb106afc75f2daab341edd31b7508557525f6fb21643933733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the G_unit test use a dummy column index. This makes it so we don't need an interface for compute_sigma_sqd_w since now we only use it with 2 dimensions. This is just nicer. larson-group/clubb#972 2022-02-03 18:15:33 -0600eb106afc75f2daab341edd31b7508557525f6fb2Making the G_unit test use a dummy column index. This makes it so we don't need an interface for compute_sigma_sqd_w since now we only use it with 2 dimensions. This is just nicer. larson-group/clubb#972editsigma_sqd_w_module.F90advance_xm_wpxp_module.F90bcda3f8c752053316304a5ce21d56977f49c53b41644004220000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in advance_xm_wpxp_module. larson-group/clubb#972 2022-02-04 13:50:20 -0600bcda3f8c752053316304a5ce21d56977f49c53b4Breaking up column loop in advance_xm_wpxp_module. larson-group/clubb#972editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F900a7b2cda84e35cf4f34a3a582daf8b67a6a621941644016923000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column loop into local functions. larson-group/clubb#972 2022-02-04 17:22:03 -06000a7b2cda84e35cf4f34a3a582daf8b67a6a62194Pushing column loop into local functions. larson-group/clubb#972editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90775ab377c5ff0ed340e9dbfa0bcb7af76d1687d01644444703000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving stats call for uprcp and vprcp to after they are calculated. This fixes the silhs restart test. But does not seem to fix the E3SM or CAM tests that are still failing. 2022-02-09 16:11:43 -0600775ab377c5ff0ed340e9dbfa0bcb7af76d1687d0Moving stats call for uprcp and vprcp to after they are calculated. This fixes the silhs restart test. But does not seem to fix the E3SM or CAM tests that are still failing.editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilejenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilef7f5162caf9fcc31b370ccdf9a7e29f9d3ba084f1644445324000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduAdded log file output in the post step so it is displayed when the test fails. 2022-02-09 16:22:04 -0600f7f5162caf9fcc31b370ccdf9a7e29f9d3ba084fAdded log file output in the post step so it is displayed when the test fails.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileeditjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilejenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfiledcbf32239739d2f3d5ab6b77bc5be4ca68b8780c1644517351000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing ne4 jenkins script from small copy-paste error. 2022-02-10 12:22:31 -0600dcbf32239739d2f3d5ab6b77bc5be4ca68b8780cFixing ne4 jenkins script from small copy-paste error.editjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_ne4_silhs.cshc199a8ecb82516a7f84fe65546de2fbc5ee7030f1644526203000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduScript now exits with 1 when run fails. 2022-02-10 14:50:03 -0600c199a8ecb82516a7f84fe65546de2fbc5ee7030fScript now exits with 1 when run fails.editnightly_test/nightly_e3sm_ne4_silhs.cshcomponents/cam/src/physics/cam/clubb_intr.F90c0812f5b4814b6e066052217a0340ad3f2d5e1fa1644534505000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing the issue with clubb_silhs_devel branch. The arrays for the variables that need to be saved when the PDF is in the "post" position (wp2rtp, etc.) were declared as 2-D to be passed into CLUBB, but they should only be 1-D. 2022-02-10 17:08:25 -0600c0812f5b4814b6e066052217a0340ad3f2d5e1faI am fixing the issue with clubb_silhs_devel branch. The arrayseditcomponents/cam/src/physics/cam/clubb_intr.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilefd7317fdfdbe3098d972dc0de91a8af6b4d3e8741644872392000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduChanging post step order to read log files before removing them. 2022-02-14 14:59:52 -0600fd7317fdfdbe3098d972dc0de91a8af6b4d3e874Changing post step order to read log files before removing them.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_ne4_silhs.cshed44885d646ef9ec5e89a3eec1288f5ed874464f1644876086000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing script to make the error code correct upon exit 2022-02-14 16:01:26 -0600ed44885d646ef9ec5e89a3eec1288f5ed874464fFixing script to make the error code correct upon exiteditnightly_test/nightly_e3sm_ne4_silhs.cshjenkins_tests/e3sm_run_gfortran_test/Jenkinsfile1d594527b82dbed888727235832b22121a2f54361644959464000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing log copy statements to allow test to run. 2022-02-15 15:11:04 -06001d594527b82dbed888727235832b22121a2f5436Fixing log copy statements to allow test to run.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileclubb_api_module.F90402036c07820f647c23fbe11eae422423adacad71645044208000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding 2D version of zt2zm and zm2zt to clubb_api 2022-02-16 14:43:28 -0600402036c07820f647c23fbe11eae422423adacad7Adding 2D version of zt2zm and zm2zt to clubb_apieditclubb_api_module.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_scm_ARM97.csh3470afcb6bb75eae50d10d4106393e6a7ebde09b1645137813000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd arm_97 case to the Jenkins e3sm_run_gfortran_test 2022-02-17 16:43:33 -06003470afcb6bb75eae50d10d4106393e6a7ebde09bAdd arm_97 case to the Jenkins e3sm_run_gfortran_testeditjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_scm_ARM97.cshadvance_xm_wpxp_module.F9076ade90ca6c58592fb9ad1ed4232a03249257f021645143350000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPushing loop into solve_xm_wpxp_with_single_lhs (#986) Co-authored-by: Peter Roels <56004443+pbroels@users.noreply.github.com> 2022-02-17 18:15:50 -060076ade90ca6c58592fb9ad1ed4232a03249257f02Pushing loop into solve_xm_wpxp_with_single_lhs (#986)editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F905c71aa30cb7d3a8d1d12c9fcfee59669157b08961645475225000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRefactoring to remove need for global stats scratch variables. (#988) * Refactoring to remove need for global stats scratch variables. larson-group/clubb#972 * Changing name of new stats_scratch variables to be more descriptive. 2022-02-21 14:27:05 -06005c71aa30cb7d3a8d1d12c9fcfee59669157b0896Refactoring to remove need for global stats scratch variables. (#988)editadvance_xm_wpxp_module.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/pbroelspbroelsfalse61http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/61/59http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/59/BRANCHorigin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3TESTe3sm_run_gfortran_testStarted by user 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#5959false5913479FAILURE1645566595981http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/59/nightly_test/nightly_e3sm_scm_ARM97.csh50bb9b393a2114b6ea19b94c4ab94fdf0595f05f1645223514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating the ARM 97 E3SM SCM run script so that it runs with E3SM v2. 2022-02-18 16:31:54 -060050bb9b393a2114b6ea19b94c4ab94fdf0595f05fUpdating the ARM 97 E3SM SCM run script so that it runs witheditnightly_test/nightly_e3sm_scm_ARM97.cshcomponents/eam/src/physics/cam/micro_mg2_0.F90f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da721645224074000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of this hyper-annoying print statement. 2022-02-18 16:41:14 -0600f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72Getting rid of this hyper-annoying print statement.editcomponents/eam/src/physics/cam/micro_mg2_0.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2false60http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/60/58http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/58/BRANCHorigin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3TESTe3sm_run_gfortran_testStarted by user Brian GriffingriffinbBrian 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#5858false5813324FAILURE1645143904042http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/58/jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_scm_ARM97.csh94ef289947968beb12579a7f39b4ecde5cd15f6d1645142742000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd arm_97 case to the Jenkins e3sm_run_gfortran_test 2022-02-17 18:05:42 -060094ef289947968beb12579a7f39b4ecde5cd15f6dAdd arm_97 case to the Jenkins e3sm_run_gfortran_testeditjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_scm_ARM97.cshnightly_test/nightly_e3sm_scm_ARM97.csh418ff2c22e23bba4d3986205e8df83215ed471251645143204000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated the E3SM SCM runscript for ARM 97 for E3SM v2 code. 2022-02-17 18:13:24 -0600418ff2c22e23bba4d3986205e8df83215ed47125Updated the E3SM SCM runscript for ARM 97 for E3SM v2 code.editnightly_test/nightly_e3sm_scm_ARM97.cshgithttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2false59http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/59/57http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/57/BRANCHorigin/quick_testTESTe3sm_run_gfortran_testStarted by user Gunther HueblerhueblerGunther 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#5656false5613318FAILURE1645139404034http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/56/http://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse57http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/57/55http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/55/BRANCHorigin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3TESTe3sm_run_gfortran_testStarted by user Brian GriffingriffinbBrian 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#5555false5513316FAILURE1645138541083http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/55/nightly_test/nightly_e3sm_scm_BOMEX.csh0c23f58d77d9922918d5b25fb1392db25f088f021640820708000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:31:48 -06000c23f58d77d9922918d5b25fb1392db25f088f02Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_BOMEX.cshnightly_test/nightly_e3sm_scm_DYCOMSrf01.csh26aea7440d0ae3c1e437f59d0d2980b64c9222e61640820760000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:32:40 -060026aea7440d0ae3c1e437f59d0d2980b64c9222e6Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshbfa71a09b1a72fa06fd3aa25503e6e4c5127feff1640820849000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:34:09 -0600bfa71a09b1a72fa06fd3aa25503e6e4c5127feffChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_RICO.cshcime_config/machines/config_compilers.xmlc99918ee5a320c30300dd289e3de3b5e624b1e301641243985000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the nelson's FFLAGS in config_compilers.xml 2022-01-03 15:06:25 -0600c99918ee5a320c30300dd289e3de3b5e624b1e30Updating the nelson's FFLAGS in config_compilers.xmleditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xml055b469d8873020292fca142c7d77f60440690d51641515116000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Updating the nelson's FFLAGS in config_compilers.xml" This is possibly temporary to allow us to go back to the last state of the compiler flags while we compile with gfortran 8. This reverts commit c99918ee5a320c30300dd289e3de3b5e624b1e30. 2022-01-06 18:25:16 -0600055b469d8873020292fca142c7d77f60440690d5Revert "Updating the nelson's FFLAGS in config_compilers.xml"editcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml382ef495458e95b439d464793de0f24e7aff33a81641943493000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_devel branch. 2022-01-11 17:24:53 -0600382ef495458e95b439d464793de0f24e7aff33a8I am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_develeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90c9563ef663afe0f6f8ea5241ea892114365885ae1641944304000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler. 2022-01-11 17:38:24 -0600c9563ef663afe0f6f8ea5241ea892114365885aeUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler.editcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/clubb_intr.F90e9362052b2fd593508834067b59c8bb63c3ba8f01642028438000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding w_up_in_cloud to the pbuf, which will eventually allow it to be ported for use in another area of the model. 2022-01-12 17:00:38 -0600e9362052b2fd593508834067b59c8bb63c3ba8f0Adding w_up_in_cloud to the pbuf, which will eventually allow it to be portededitcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F902f2cde7827bf04feabf5c3ecb85b400ab2e9750e1642029037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB). 2022-01-12 17:10:37 -06002f2cde7827bf04feabf5c3ecb85b400ab2e9750eAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB).editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F909df1fbd0716106e791faecd131c982b3ae1802dc1642033579000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev') rather than momentum levels ('ilev'). 2022-01-12 18:26:19 -06009df1fbd0716106e791faecd131c982b3ae1802dcThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev')editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90897a1afcceaf9c03a5e2421c631ebd9d91ec29051642115926000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing some of the statistical output level listings for variable CLUBB variables. In other words, what should be on thermodynamic levels ('lev') vs. what should be on momemtum levels ('ilev'). 2022-01-13 17:18:46 -0600897a1afcceaf9c03a5e2421c631ebd9d91ec2905I am fixing some of the statistical output level listings for variable CLUBBeditcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshnightly_test/nightly_e3sm_scm_BOMEX.csh9cc3523947fc0e16063926af4819366e4415276b1645134909000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01, and RICO) to work on Nelson for the E3SM V2 code. 2022-02-17 15:55:09 -06009cc3523947fc0e16063926af4819366e4415276bI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01,editnightly_test/nightly_e3sm_scm_RICO.csheditnightly_test/nightly_e3sm_scm_BOMEX.csheditnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshgithttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse56http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/56/54http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/54/BRANCHorigin/arm97_addTESTe3sm_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal517d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test7d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing54a154f40e46aadea1c285080ace7b99ca2f6610b5a154f40e46aadea1c285080ace7b99ca2f6610b5refs/remotes/origin/arm97_adda154f40e46aadea1c285080ace7b99ca2f6610b5a154f40e46aadea1c285080ace7b99ca2f6610b5refs/remotes/origin/arm97_add20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devela154f40e46aadea1c285080ace7b99ca2f6610b5a154f40e46aadea1c285080ace7b99ca2f6610b5refs/remotes/origin/arm97_addhttps://github.com/larson-group/e3sm.gitfalse#548197851949700branch_e3sm_test #5454false5413314SUCCESS1645136461953http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/54/nightly_test/nightly_e3sm_scm_ARM97.csha154f40e46aadea1c285080ace7b99ca2f6610b51645136452000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging flags. 2022-02-17 16:20:52 -0600a154f40e46aadea1c285080ace7b99ca2f6610b5Changing flags.editnightly_test/nightly_e3sm_scm_ARM97.cshgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse55http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/55/53http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/53/BRANCHorigin/arm97_addTESTe3sm_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal517d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test7d2e05bae78a36e8fb982572537047adc37c41977d2e05bae78a36e8fb982572537047adc37c4197refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing53a0713e8e85d32f519047ba743a98c0d9154baf9aa0713e8e85d32f519047ba743a98c0d9154baf9arefs/remotes/origin/arm97_adda0713e8e85d32f519047ba743a98c0d9154baf9aa0713e8e85d32f519047ba743a98c0d9154baf9arefs/remotes/origin/arm97_add20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devela0713e8e85d32f519047ba743a98c0d9154baf9aa0713e8e85d32f519047ba743a98c0d9154baf9arefs/remotes/origin/arm97_addhttps://github.com/larson-group/e3sm.gitfalse#538174991949700branch_e3sm_test #5353false5313312SUCCESS1645135048349http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/53/jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilea0713e8e85d32f519047ba743a98c0d9154baf9a1645135011000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug. 2022-02-17 15:56:51 -0600a0713e8e85d32f519047ba743a98c0d9154baf9aFixing bug.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse54http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/54/52http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/52/BRANCHorigin/arm97_addTESTe3sm_run_gfortran_testStarted by user Gunther HueblerhueblerGunther 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#5252false5213311FAILURE1645134914053http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/52/http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse53http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/53/51http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/51/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther 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#5151false5113128FAILURE1644532215408http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/51/components/cam/src/physics/cam/clubb_intr.F907d2e05bae78a36e8fb982572537047adc37c41971644532184000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick check for brians fix 2022-02-10 16:29:44 -06007d2e05bae78a36e8fb982572537047adc37c4197quick check for brians fixeditcomponents/cam/src/physics/cam/clubb_intr.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse52http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/52/50http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/50/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther 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#4343false4312832SUCCESS1643928372952http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/43/components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/mixing_length.F904481e953eafb558ff8b73871ce898e0e413725171643928335000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick_test aghrhrj 2022-02-03 16:45:35 -06004481e953eafb558ff8b73871ce898e0e41372517quick_test aghrhrjeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/mixing_length.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse44http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/44/42http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/42/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal429ea4aefff169312a6c4aed088f9edad65ebe2dcd9ea4aefff169312a6c4aed088f9edad65ebe2dcdrefs/remotes/origin/quick_test9ea4aefff169312a6c4aed088f9edad65ebe2dcd9ea4aefff169312a6c4aed088f9edad65ebe2dcdrefs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel9ea4aefff169312a6c4aed088f9edad65ebe2dcd9ea4aefff169312a6c4aed088f9edad65ebe2dcdrefs/remotes/origin/quick_testhttps://github.com/larson-group/e3sm.gitfalse#4232840491949700branch_e3sm_test #4242false4212830ABORTED1643924989271http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/42/components/cam/src/physics/clubb/model_flags.F909ea4aefff169312a6c4aed088f9edad65ebe2dcd1643924969000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick_test awrrfg 2022-02-03 15:49:29 -06009ea4aefff169312a6c4aed088f9edad65ebe2dcdquick_test awrrfgeditcomponents/cam/src/physics/clubb/model_flags.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse43http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/43/41http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/41/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal416fd6cb60752591b463ac7a930238dffbd546a96a6fd6cb60752591b463ac7a930238dffbd546a96arefs/remotes/origin/quick_test6fd6cb60752591b463ac7a930238dffbd546a96a6fd6cb60752591b463ac7a930238dffbd546a96arefs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel6fd6cb60752591b463ac7a930238dffbd546a96a6fd6cb60752591b463ac7a930238dffbd546a96arefs/remotes/origin/quick_testhttps://github.com/larson-group/e3sm.gitfalse#412469151949700branch_e3sm_test #4141false4112828FAILURE1643922292775http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/41/components/cam/src/physics/clubb/advance_clubb_core_module.F906fd6cb60752591b463ac7a930238dffbd546a96a1643922276000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick_test agdgh 2022-02-03 15:04:36 -06006fd6cb60752591b463ac7a930238dffbd546a96aquick_test agdgheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse42http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/42/40http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/40/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal40ac5d6f0f086c595c3c196a0414acedf24ec9a244ac5d6f0f086c595c3c196a0414acedf24ec9a244refs/remotes/origin/quick_testac5d6f0f086c595c3c196a0414acedf24ec9a244ac5d6f0f086c595c3c196a0414acedf24ec9a244refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_develac5d6f0f086c595c3c196a0414acedf24ec9a244ac5d6f0f086c595c3c196a0414acedf24ec9a244refs/remotes/origin/quick_testhttps://github.com/larson-group/e3sm.gitfalse#402550421949700branch_e3sm_test #4040false4012826FAILURE1643921634830http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/40/advance_clubb_core_module.F90aa44cb502926842665f158cbfab7c8cf1df5c3c51643406577000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduIntializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972 2022-01-28 15:49:37 -0600aa44cb502926842665f158cbfab7c8cf1df5c3c5Intializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972editadvance_clubb_core_module.F90components/cam/src/physics/cam/clubb_intr.F909b36b8ae61869fdf50fdf165fdaeff5ec70009f21643407403000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking sure that ice_supersat_frac is configured properly for restarts and saving the variable from timestep to timestep for input into advance_clubb_core_api. 2022-01-28 16:03:23 -06009b36b8ae61869fdf50fdf165fdaeff5ec70009f2Making sure that ice_supersat_frac is configured properly for restartseditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90d46a438555ccdb8cb5fc73a8e56c44b592f2658a1643408348000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed an array size mismatch 2022-01-28 16:19:08 -0600d46a438555ccdb8cb5fc73a8e56c44b592f2658aFixed an array size mismatcheditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F902b088c335181cb9897821a3d593edbaf1ab3bfbc1643410166000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded an initialization for ice_supersat_frac 2022-01-28 16:49:26 -06002b088c335181cb9897821a3d593edbaf1ab3bfbcAdded an initialization for ice_supersat_fraceditcomponents/cam/src/physics/cam/clubb_intr.F90pdf_parameter_module.F905088c109e589f0398450ea86996147836b8b75d81643411572000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972 2022-01-28 17:12:52 -06005088c109e589f0398450ea86996147836b8b75d8Fixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972editpdf_parameter_module.F90advance_clubb_core_module.F90grid_class.F90f1154aed2f15410ec35a99adb03d2d517f9fad2d1643747310000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into zm2zt and zt2zm. larson-group/clubb#972 2022-02-01 14:28:30 -0600f1154aed2f15410ec35a99adb03d2d517f9fad2dPushing column index into zm2zt and zt2zm. larson-group/clubb#972editadvance_clubb_core_module.F90editgrid_class.F90advance_clubb_core_module.F90Skx_module.F90932c80e272c18da1ccf51719eed39b370ca459121643751025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into Skx_func and making it a subroutine. larson-group/clubb#972 2022-02-01 15:30:25 -0600932c80e272c18da1ccf51719eed39b370ca45912Pushing column index into Skx_func and making it a subroutine. larson-group/clubb#972editadvance_clubb_core_module.F90editSkx_module.F90sigma_sqd_w_module.F90grid_class.F90advance_clubb_core_module.F90advance_helper_module.F90a3665dbc5e18abd7e8281d753abed2bbb03d8f1c1643762869000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA variety of small loop pushing. larson-group/clubb#972 2022-02-01 18:47:49 -0600a3665dbc5e18abd7e8281d753abed2bbb03d8f1cA variety of small loop pushing. larson-group/clubb#972editsigma_sqd_w_module.F90editgrid_class.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90sigma_sqd_w_module.F907f7db11cab062c725e5fe2787d45f0225e4ba60f1643831947000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed small bug that slipped through because the G_unit tests use nz=1. 2022-02-02 13:59:07 -06007f7db11cab062c725e5fe2787d45f0225e4ba60fFixed small bug that slipped through because the G_unit tests use nz=1.editsigma_sqd_w_module.F90mixing_length.F90advance_clubb_core_module.F90advance_helper_module.F903c97bd65f2133f211f2d8502473f2cf32a025be11643840875000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972 2022-02-02 16:27:55 -06003c97bd65f2133f211f2d8502473f2cf32a025be1Pushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972editmixing_length.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90components/cam/src/physics/clubb/mixing_length.F90ac5d6f0f086c595c3c196a0414acedf24ec9a2441643921599000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick_test sodgjk 2022-02-03 14:53:19 -0600ac5d6f0f086c595c3c196a0414acedf24ec9a244quick_test sodgjkeditcomponents/cam/src/physics/clubb/mixing_length.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse41http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/41/39http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/39/BRANCHorigin/clubb_silhs_develTESTe3sm_ne4_silhs_run_gfortran_testStarted by user pbroelspbroelspbroels17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal38ec1e8c1892efa662e666736369ec3b7ff1350782ec1e8c1892efa662e666736369ec3b7ff1350782refs/remotes/origin/quick_testec1e8c1892efa662e666736369ec3b7ff1350782ec1e8c1892efa662e666736369ec3b7ff1350782refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts394b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_devel4b220203ed7aa3e02c0fbc30bfb02fb53a561fec4b220203ed7aa3e02c0fbc30bfb02fb53a561fecrefs/remotes/origin/clubb_silhs_develhttps://github.com/larson-group/e3sm.gitfalse#392526381949700branch_e3sm_test #3939false3912614FAILURE1643668832972http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/39/advance_clubb_core_module.F900bae8e4aaa7651515c8d5df797909bd9de345c2f1642725231000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in advance_clubb_core. larson-group/clubb#972 2022-01-20 18:33:51 -06000bae8e4aaa7651515c8d5df797909bd9de345c2fBreaking up column loop in advance_clubb_core. larson-group/clubb#972editadvance_clubb_core_module.F90advance_clubb_core_module.F90d55d2cbc2faec828838317f478b04fa8ea410f7a1642801850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure and breaking it up. larson-group/clubb#972 2022-01-21 15:50:50 -0600d55d2cbc2faec828838317f478b04fa8ea410f7aPushing loop into pdf_closure and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90parameters_tunable.F90fabb386b09890bd8a64d59b5ae24bae937af9f931642810666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulence from going to the model top, which ultimately caused MC3E to crash by becoming too cold. Additionally, I set C_invrs_tau_shear back to 0.15 from 0.16. This commit is BIT_CHANGING. 2022-01-21 18:17:46 -0600fabb386b09890bd8a64d59b5ae24bae937af9f93I changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulenceeditparameters_tunable.F90advance_clubb_core_module.F90pdf_closure_module.F902c6b628542302815ac566410bfa583f64b2524641643072201000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972 2022-01-24 18:56:41 -06002c6b628542302815ac566410bfa583f64b252464Pushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90af9c183212dde92967cca80d87ef80f1aabd76b11643141070000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972 2022-01-25 14:04:30 -0600af9c183212dde92967cca80d87ef80f1aabd76b1Making the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972editpdf_closure_module.F90editadvance_clubb_core_module.F90model_flags.F90c0b2297dad094c1121026e8520de001748c1d0a71643148928000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking a commit that officially places the call to the PDF in the "post" position (meaning after CLUBB's predictive fields have been advanced). This commit is BIT_CHANGING 2022-01-25 16:15:28 -0600c0b2297dad094c1121026e8520de001748c1d0a7Making a commit that officially places the call to the PDF in the "post"editmodel_flags.F90advance_clubb_core_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90f1c545226c133b42ec11c523daee00e938910cf31643158136000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972 2022-01-25 18:48:56 -0600f1c545226c133b42ec11c523daee00e938910cf3Pushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972editpdf_closure_module.F90editadvance_clubb_core_module.F90editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F9007b04afa6c644e22e0a920739ba49eab985c08821643158635000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot an & symbol. 2022-01-25 18:57:15 -060007b04afa6c644e22e0a920739ba49eab985c0882Forgot an & symbol.editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90376d0e4907dc788fce6a52b6d0dc5ad4d7481f341643238890000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduWe need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972 2022-01-26 17:14:50 -0600376d0e4907dc788fce6a52b6d0dc5ad4d7481f34We need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90clubb_api_module.F900201571e2624e4580ec5e4f44582e187d7908ebb1643342499000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating ice_supersat_frac to be an intent(inout) variable for advance_clubb_core. When the PDF is in the "post" position, there is a chance that it can be used before it is set unless it is preserved from timestep to timestep. 2022-01-27 22:01:39 -06000201571e2624e4580ec5e4f44582e187d7908ebbI am updating ice_supersat_frac to be an intent(inout) variable foreditadvance_clubb_core_module.F90editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F901037d7413da3d46060b17cf8589d8afb9797c98f1643396679000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-01-28 13:04:39 -06001037d7413da3d46060b17cf8589d8afb9797c98fMaking compatible with latest clubb change.editcomponents/cam/src/physics/cam/clubb_intr.F90advance_clubb_core_module.F90aa44cb502926842665f158cbfab7c8cf1df5c3c51643406577000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduIntializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972 2022-01-28 15:49:37 -0600aa44cb502926842665f158cbfab7c8cf1df5c3c5Intializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972editadvance_clubb_core_module.F90components/cam/src/physics/cam/clubb_intr.F909b36b8ae61869fdf50fdf165fdaeff5ec70009f21643407403000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking sure that ice_supersat_frac is configured properly for restarts and saving the variable from timestep to timestep for input into advance_clubb_core_api. 2022-01-28 16:03:23 -06009b36b8ae61869fdf50fdf165fdaeff5ec70009f2Making sure that ice_supersat_frac is configured properly for restartseditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90d46a438555ccdb8cb5fc73a8e56c44b592f2658a1643408348000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed an array size mismatch 2022-01-28 16:19:08 -0600d46a438555ccdb8cb5fc73a8e56c44b592f2658aFixed an array size mismatcheditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F902b088c335181cb9897821a3d593edbaf1ab3bfbc1643410166000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded an initialization for ice_supersat_frac 2022-01-28 16:49:26 -06002b088c335181cb9897821a3d593edbaf1ab3bfbcAdded an initialization for ice_supersat_fraceditcomponents/cam/src/physics/cam/clubb_intr.F90pdf_parameter_module.F905088c109e589f0398450ea86996147836b8b75d81643411572000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972 2022-01-28 17:12:52 -06005088c109e589f0398450ea86996147836b8b75d8Fixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972editpdf_parameter_module.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse40http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/40/38http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/38/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal38ec1e8c1892efa662e666736369ec3b7ff1350782ec1e8c1892efa662e666736369ec3b7ff1350782refs/remotes/origin/quick_testec1e8c1892efa662e666736369ec3b7ff1350782ec1e8c1892efa662e666736369ec3b7ff1350782refs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts376adba402c5df8819383f0728669ffc3ed186edb66adba402c5df8819383f0728669ffc3ed186edb6refs/remotes/origin/clubb_silhs_devel6adba402c5df8819383f0728669ffc3ed186edb66adba402c5df8819383f0728669ffc3ed186edb6refs/remotes/origin/clubb_silhs_develec1e8c1892efa662e666736369ec3b7ff1350782ec1e8c1892efa662e666736369ec3b7ff1350782refs/remotes/origin/quick_testhttps://github.com/larson-group/e3sm.gitfalse#387685851949700branch_e3sm_test #3838false3812534SUCCESS1643404190413http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/38/clubb_api_module.F90946ca541e9acab72c5dbd52b2df8651bfc0bfb761642618464000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972 2022-01-19 12:54:24 -0600946ca541e9acab72c5dbd52b2df8651bfc0bfb76Adding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F90db4593f73e3fe65968cdee9579c6d6996f3f83c81642631245000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking e3sm use the single column version of advance clubb core directly, since it does not want to use the interface version. larson-group/clubb#972 2022-01-19 16:27:25 -0600db4593f73e3fe65968cdee9579c6d6996f3f83c8Making e3sm use the single column version of advance clubb core directly, since it does not want to use the interface version. larson-group/clubb#972editcomponents/cam/src/physics/cam/clubb_intr.F90clubb_api_module.F907e6744fa4864a0219f8e4a32d0d72fb2664598d91642631316000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972 2022-01-19 16:28:36 -06007e6744fa4864a0219f8e4a32d0d72fb2664598d9Making single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972editclubb_api_module.F90advance_clubb_core_module.F900bae8e4aaa7651515c8d5df797909bd9de345c2f1642725231000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBreaking up column loop in advance_clubb_core. larson-group/clubb#972 2022-01-20 18:33:51 -06000bae8e4aaa7651515c8d5df797909bd9de345c2fBreaking up column loop in advance_clubb_core. larson-group/clubb#972editadvance_clubb_core_module.F90advance_clubb_core_module.F90d55d2cbc2faec828838317f478b04fa8ea410f7a1642801850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure and breaking it up. larson-group/clubb#972 2022-01-21 15:50:50 -0600d55d2cbc2faec828838317f478b04fa8ea410f7aPushing loop into pdf_closure and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90parameters_tunable.F90fabb386b09890bd8a64d59b5ae24bae937af9f931642810666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulence from going to the model top, which ultimately caused MC3E to crash by becoming too cold. Additionally, I set C_invrs_tau_shear back to 0.15 from 0.16. This commit is BIT_CHANGING. 2022-01-21 18:17:46 -0600fabb386b09890bd8a64d59b5ae24bae937af9f93I changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulenceeditparameters_tunable.F90advance_clubb_core_module.F90pdf_closure_module.F902c6b628542302815ac566410bfa583f64b2524641643072201000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972 2022-01-24 18:56:41 -06002c6b628542302815ac566410bfa583f64b252464Pushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90af9c183212dde92967cca80d87ef80f1aabd76b11643141070000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972 2022-01-25 14:04:30 -0600af9c183212dde92967cca80d87ef80f1aabd76b1Making the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972editpdf_closure_module.F90editadvance_clubb_core_module.F90model_flags.F90c0b2297dad094c1121026e8520de001748c1d0a71643148928000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking a commit that officially places the call to the PDF in the "post" position (meaning after CLUBB's predictive fields have been advanced). This commit is BIT_CHANGING 2022-01-25 16:15:28 -0600c0b2297dad094c1121026e8520de001748c1d0a7Making a commit that officially places the call to the PDF in the "post"editmodel_flags.F90advance_clubb_core_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90f1c545226c133b42ec11c523daee00e938910cf31643158136000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972 2022-01-25 18:48:56 -0600f1c545226c133b42ec11c523daee00e938910cf3Pushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972editpdf_closure_module.F90editadvance_clubb_core_module.F90editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F9007b04afa6c644e22e0a920739ba49eab985c08821643158635000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot an & symbol. 2022-01-25 18:57:15 -060007b04afa6c644e22e0a920739ba49eab985c0882Forgot an & symbol.editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F90376d0e4907dc788fce6a52b6d0dc5ad4d7481f341643238890000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduWe need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972 2022-01-26 17:14:50 -0600376d0e4907dc788fce6a52b6d0dc5ad4d7481f34We need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90clubb_api_module.F900201571e2624e4580ec5e4f44582e187d7908ebb1643342499000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating ice_supersat_frac to be an intent(inout) variable for advance_clubb_core. When the PDF is in the "post" position, there is a chance that it can be used before it is set unless it is preserved from timestep to timestep. 2022-01-27 22:01:39 -06000201571e2624e4580ec5e4f44582e187d7908ebbI am updating ice_supersat_frac to be an intent(inout) variable foreditadvance_clubb_core_module.F90editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F901037d7413da3d46060b17cf8589d8afb9797c98f1643396679000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-01-28 13:04:39 -06001037d7413da3d46060b17cf8589d8afb9797c98fMaking compatible with latest clubb change.editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/model_flags.F90ec1e8c1892efa662e666736369ec3b7ff13507821643404150000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduquick_test 2022-01-28 15:09:10 -0600ec1e8c1892efa662e666736369ec3b7ff1350782quick_testeditcomponents/cam/src/physics/clubb/model_flags.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse39http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/39/37http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/37/BRANCHorigin/clubb_silhs_develTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther Huebler17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal361e06a5688bd7f057c27553e8d412db1e523c615e1e06a5688bd7f057c27553e8d412db1e523c615erefs/remotes/origin/quick_test1e06a5688bd7f057c27553e8d412db1e523c615e1e06a5688bd7f057c27553e8d412db1e523c615erefs/remotes/origin/quick_test716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break28ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P3ba623886b19d1bb3e3c061d138f3dc949bdbbb9eba623886b19d1bb3e3c061d138f3dc949bdbbb9erefs/remotes/origin/bmg929/atm/E3SM_clubb_silhs_1c77ed3_20211115_P31589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts376adba402c5df8819383f0728669ffc3ed186edb66adba402c5df8819383f0728669ffc3ed186edb6refs/remotes/origin/clubb_silhs_devel6adba402c5df8819383f0728669ffc3ed186edb66adba402c5df8819383f0728669ffc3ed186edb6refs/remotes/origin/clubb_silhs_devel6adba402c5df8819383f0728669ffc3ed186edb66adba402c5df8819383f0728669ffc3ed186edb6refs/remotes/origin/clubb_silhs_develhttps://github.com/larson-group/e3sm.gitfalse#377815161949700branch_e3sm_test #3737false3712036SUCCESS1642711517913http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/37/advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90ecf50b7dd71b99418e7b378199bec3f540f9ab8f1631318520000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have passed clubb_params down into advance_xm_wpxp_module.F90. The results from this revision are an exact match to the results from the previous revision for all cases. 2021-09-10 19:02:00 -0500ecf50b7dd71b99418e7b378199bec3f540f9ab8fI have passed clubb_params down into advance_xm_wpxp_module.F90.editadvance_xm_wpxp_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90pdf_closure_module.F9069a9f213c5189310355d117e82d7047829f4e5501632504823000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comSee ticket #958 2021-09-24 12:33:43 -050069a9f213c5189310355d117e82d7047829f4e550See ticketeditpdf_closure_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90b33af07b27883cd48fed63d9fa1557d3b2d4464d1632791429000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have passed down CLUBB's tunable parameters into advance_wp2_wp3_module.F90. The results in NetCDF output files from this revision are an exact match to the results in NetCDF output files from the previous revision for all cases. 2021-09-27 20:10:29 -0500b33af07b27883cd48fed63d9fa1557d3b2d4464dI have passed down CLUBB's tunable parameters into advance_wp2_wp3_module.F90.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F90pdf_closure_module.F90f743922fbd8e78ed86270101cb28dbcbb5f5c0f71633009731000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comadded some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk 2021-09-30 08:48:51 -0500f743922fbd8e78ed86270101cb28dbcbb5f5c0f7added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to diskeditpdf_closure_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90advance_xp2_xpyp_module.F900f9530e65dbeccc6103c09e4497072ffef4fbf361633124125000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates to separate out C4 and C14 in advance_xp2 module. This will make it easier to control which invrs_tau_* variable multiplies each term for example. This commit is BIT_CHANGING owing to order of operations differences, but the pyplotgen output for most cases looks identical to the naked eye. 2021-10-01 16:35:25 -05000f9530e65dbeccc6103c09e4497072ffef4fbf36Updates to separate out C4 and C14 in advance_xp2 module. This will make it easier to control which invrs_tau_* variable multiplies each term for example.editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F904a3fe3288e95f3ff0042b328a2221113baa445a81633124125000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comChanging the name of dummy_1d variables for clarity. 2021-10-01 16:35:25 -05004a3fe3288e95f3ff0042b328a2221113baa445a8Changing the name of dummy_1d variables for clarity.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90724a970d8e0b0977d63512e25c4462d2600392901633127377000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI passed down CLUBB's tunable parameters into advance_xp2_xpyp_module.F90 for most parameters, excluding C4 and C14. Results are unchanged. 2021-10-01 17:29:37 -0500724a970d8e0b0977d63512e25c4462d260039290I passed down CLUBB's tunable parameters into advance_xp2_xpyp_module.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90860a184b28c1e3889801dfc39a1c96768fd870461633359161000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd a blank line to trigger nightly tests. 2021-10-04 09:52:41 -0500860a184b28c1e3889801dfc39a1c96768fd87046Add a blank line to trigger nightly tests.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90pdf_closure_module.F909ac836f8b76e39e820b5fecaae969f70a7b39c211633470307000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more of CLUBB's tunable parameters. 2021-10-05 16:45:07 -05009ac836f8b76e39e820b5fecaae969f70a7b39c21Passing down more of CLUBB's tunable parameters.editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F907b950575ac2c00c63de42c11f33c459e649af0281633470537000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI accidentally removed an important comment in the previous commit. 2021-10-05 16:48:57 -05007b950575ac2c00c63de42c11f33c459e649af028I accidentally removed an important comment in the previous commit.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F90835d3d3155f98b2a9b6ba60cb9fa02a94fb7800b1633637871000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more CLUBB tunable parameters. Everything is bit-for-bit. 2021-10-07 15:17:51 -0500835d3d3155f98b2a9b6ba60cb9fa02a94fb7800bPassing down more CLUBB tunable parameters.editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90b65e4cfa8ab2923db015ef2723e3e69071d2c83c1633728172000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore passing down CLUBB parameters ... whoop-de-doo 2021-10-08 16:22:52 -0500b65e4cfa8ab2923db015ef2723e3e69071d2c83cMore passing down CLUBB parameters ... whoop-de-dooeditadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90Skx_module.F90diagnose_correlations_module.F90advance_clubb_core_module.F90sfc_varnce_module.F90351cc9aa27aa212ef6cefb48b6c85ec601a993b01633732238000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down more tunable parameters and removing references to parameters_tunable. Results are bit-for-bit. 2021-10-08 17:30:38 -0500351cc9aa27aa212ef6cefb48b6c85ec601a993b0Passing down more tunable parameters and removing references toeditSkx_module.F90editdiagnose_correlations_module.F90editadvance_clubb_core_module.F90editsfc_varnce_module.F90advance_clubb_core_module.F903c883d2e41e77b89ea758961d5e11ac577a1fa821634055768000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving line to trigger the nightly tests for all repos. 2021-10-12 11:22:48 -05003c883d2e41e77b89ea758961d5e11ac577a1fa82Removing line to trigger the nightly tests for all repos.editadvance_clubb_core_module.F90pdf_closure_module.F90stats_variables.F90advance_clubb_core_module.F90stats_clubb_utilities.F90model_flags.F90stats_zt_module.F9024ab4b2089583ab183efc1963c23fb3153fd20481634058263000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comSee respective messages on the issue 958 on date 10/12/2021 2021-10-12 12:04:23 -050024ab4b2089583ab183efc1963c23fb3153fd2048See respective messages on the issue 958 on date 10/12/2021editstats_variables.F90editmodel_flags.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90mixing_length.F90advance_clubb_core_module.F90parameters_tunable.F90clubb_api_module.F9040e87490f501202d6d95e7fd2c9c2ccab164ab731634087718000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduHandling the abomination that is lmin. 2021-10-12 20:15:18 -050040e87490f501202d6d95e7fd2c9c2ccab164ab73Handling the abomination that is lmin.editmixing_length.F90editadvance_clubb_core_module.F90editparameters_tunable.F90editclubb_api_module.F90diffusion.F90db7584133b87452bedc0538fed00f339dca49ae31634219703000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCommented out the k=1 boundary conditions in diffusion_zm_lhs and diffusion_zt_lhs, since these are not currently fed into the final LHS matrix. I included comments to describe why this was done. Results are b4b. See https://github.com/larson-group/clubb/issues/920#issuecomment-942735433. 2021-10-14 08:55:03 -0500db7584133b87452bedc0538fed00f339dca49ae3Commented out the k=1 boundary conditions in diffusion_zm_lhs and diffusion_zt_lhs, since these are not currently fed into the final LHS matrix. I included comments to describe why this was done. Results are b4b.editdiffusion.F90mixing_length.F90advance_clubb_core_module.F90c8cadb5e9708e898ac688db79e1da0ec0ff2ad291634254172000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing tunable parameters into the new tau code. 2021-10-14 18:29:32 -0500c8cadb5e9708e898ac688db79e1da0ec0ff2ad29Passing tunable parameters into the new tau code.editmixing_length.F90editadvance_clubb_core_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90clip_explicit.F90e6aa931ab2aa8134704c137db183ec06ee9dfcee1634768140000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassed down more parameters. Results are bit-for-bit. 2021-10-20 17:15:40 -0500e6aa931ab2aa8134704c137db183ec06ee9dfceePassed down more parameters. Results are bit-for-bit.editclip_explicit.F90editmixing_length.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90parameters_model.F90d07f2f6c2df3af24ddc90862bc2a656bdd9015d51634771341000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing through more clubb parameters. Bit-for-bit 2021-10-20 18:09:01 -0500d07f2f6c2df3af24ddc90862bc2a656bdd9015d5Passing through more clubb parameters. Bit-for-biteditadvance_clubb_core_module.F90editparameters_model.F90precipitation_fraction.F90setup_clubb_pdf_params.F90clubb_api_module.F90704eedf20b71e552fe32df3633005d50af58c27f1634854899000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down CLUBB's tunable parameters into the setup_pdf_parameters and precipitation fraction portions of the code. Everything is bit-for-bit. 2021-10-21 17:21:39 -0500704eedf20b71e552fe32df3633005d50af58c27fPassing down CLUBB's tunable parameters into the setup_pdf_parameters andeditprecipitation_fraction.F90editsetup_clubb_pdf_params.F90editclubb_api_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90diffusion.F90model_flags.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F902ee6d2a1e31e43bca3e03a406917c4454cb71e671634935501000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThese updates incorporate some of Shixuan Zhang's changes, including: (1) upwind scheme for the eddy diffusion code, which Shixuan says does not make a huge difference; and (2) l_smooth_heaviside_tau_wpxp flag in the mixing_length.F90 code, which is intended to give smoother results. Both of the flags for these changes are turned off, but these updates are BIT_CHANGING because of some minor changes to the way that factors of rho_ds_* and invrs_rho_ds_* are handled going into the diffusion.F90 subroutines. Most cases look identical in pyplotgen, but sensitive cases like arm_97 and rico look slightly different. These changes were originally in pull request #962, but because of conflicts with the master branch code base that developed, they could not be rebased and merged, so I incorporated them into this new commit. 2021-10-22 15:45:01 -05002ee6d2a1e31e43bca3e03a406917c4454cb71e67These updates incorporate some of Shixuan Zhang's changes, including:editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editdiffusion.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editmixing_length.F90editadvance_windm_edsclrm_module.F90pdf_closure_module.F90advance_clubb_core_module.F90new_hybrid_pdf_main.F90new_pdf_main.F9062d364561a81e2b878f95a327df36a4ca4bc31491635207177000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing down CLUBB's tunable parameters into the remainder of the PDF subroutines. Everything is bit-for-bit. 2021-10-25 19:12:57 -050062d364561a81e2b878f95a327df36a4ca4bc3149Passing down CLUBB's tunable parameters into the remainder of theeditnew_hybrid_pdf_main.F90editnew_pdf_main.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F9040315247ab8dc38382642bf30f1d96b329c1304d1635210039000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI passed down the forgotten thlp2_rad_coef tunable parameter. All bit-for-bit. 2021-10-25 20:00:39 -050040315247ab8dc38382642bf30f1d96b329c1304dI passed down the forgotten thlp2_rad_coef tunable parameter.editadvance_clubb_core_module.F90editclubb_api_module.F90diffusion.F9059c90454cd1a93522940f998c123795db4f23b171635271688000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables. 2021-10-26 13:08:08 -050059c90454cd1a93522940f998c123795db4f23b17Uncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables.editdiffusion.F90advance_xm_wpxp_module.F9024592ec9879d2c704c4d7301c8d18c794f2ff7441635291046000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am passing down the forgotten parameter, altitude threshold, in advance_xm_wpxp_module.F90. 2021-10-26 18:30:46 -050024592ec9879d2c704c4d7301c8d18c794f2ff744I am passing down the forgotten parameter, altitude threshold, ineditadvance_xm_wpxp_module.F90components/cam/src/physics/cam/clubb_intr.F9027c5227c6454362cb873c745fd7c69a3505239591635369265000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/968. 2021-10-27 16:14:25 -050027c5227c6454362cb873c745fd7c69a350523959Updating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/968.editcomponents/cam/src/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90bda6b42375dfc09907e7f9b37719b0d149f456711635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920. Results are b4b when the flag is turned off, which it currently is. 2021-10-27 16:16:11 -0500bda6b42375dfc09907e7f9b37719b0d149f45671Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.editclubb_api_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90fecf90bda798d6330f0c3982e5f24ef5dce274a31635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates as requested to the l_use_tke_in_K_dfsn code: - The name of the flag is changed to l_use_tke_in_wp2_wp3_K_dfsn - Comments are added to the main pieces of code in advance_wp2_wp3 - The flag is added to the "compatible_r8029" configurable flags file. See this comment https://github.com/larson-group/clubb/issues/920#issuecomment-931446401 and following for more information. 2021-10-27 16:16:11 -0500fecf90bda798d6330f0c3982e5f24ef5dce274a3Updates as requested to the l_use_tke_in_K_dfsn code:editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmodel_flags.F90output_netcdf.F90parameters_tunable.F90stats_clubb_utilities.F90clubb_api_module.F9048d34a44dac4e6c069b8edf7484da102a7b3e03c1635542624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the final stage of the "pass-down params" project. The results are bit-for-bit identical. 2021-10-29 16:23:44 -050048d34a44dac4e6c069b8edf7484da102a7b3e03cI am committing the final stage of the "pass-down params" project.editparameters_tunable.F90editstats_clubb_utilities.F90editclubb_api_module.F90editoutput_netcdf.F90silhs_api_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F90a59d8a9d971fa58d96ca0c7c0e3a8999903394011635542624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the final stage of the "pass-down params" project. The results are bit-for-bit identical. 2021-10-29 16:23:44 -0500a59d8a9d971fa58d96ca0c7c0e3a899990339401I am committing the final stage of the "pass-down params" project.editoutput_2D_samples_module.F90editsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90e21f33631a9962fc7af096d0f7c4a7a3f6ff021b1635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding an option to use invrs_tau_N2_iso for C4 terms. The same invrs_tau had been used for C4 and C14 terms, so some adjustments had to be made to separate them out (this was started with an earlier commit: https://github.com/larson-group/clubb/commit/ef3be1b1378bcd1a447f3866c9f88f8cc4764233). The flag is currently set to false so results will be b4b. See also the discussion here: https://github.com/larson-group/clubb/issues/920#issuecomment-920338746 and following comments. 2021-10-29 16:24:33 -0500e21f33631a9962fc7af096d0f7c4a7a3f6ff021bAdding an option to use invrs_tau_N2_iso for C4 terms. The same invrs_tau had been used for C4 and C14 terms, so some adjustments had to be made to separate them out (this was started with an earlier commit: https://github.com/larson-group/clubb/commit/ef3be1b1378bcd1a447f3866c9f88f8cc4764233). The flag is currently set to false so results will be b4b.editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editmixing_length.F90advance_wp2_wp3_module.F90575d6fe14ed80295cce4f30a51ff3d6aac83b5ee1635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comRenaming invrs_tau_zt and invrs_tauw3t to "invrs_tau_wp3_zt" in advance_wp2_wp3 to avoid confusion. This variable is only used for the wp3 C8 term, so one consistent name is simpler, and the name "invrs_tau_zt" is already used by another variable in advance_clubb_core. 2021-10-29 16:24:33 -0500575d6fe14ed80295cce4f30a51ff3d6aac83b5eeRenaming invrs_tau_zt and invrs_tauw3t to "invrs_tau_wp3_zt" in advance_wp2_wp3 to avoid confusion. This variable is only used for the wp3 C8 term, so one consistent name is simpler, and the name "invrs_tau_zt" is already used by another variable in advance_clubb_core.editadvance_wp2_wp3_module.F90mixing_length.F90b1a5dc605454ba0bd6ce90b50c1b1c4e5238daa21635542673000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding comments for clarity. 2021-10-29 16:24:33 -0500b1a5dc605454ba0bd6ce90b50c1b1c4e5238daa2Adding comments for clarity.editmixing_length.F90clubb_api_module.F903cc2a48057cff47763a8de0fc7a9c2d6bd1717821635637985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot to add this necessary subroutine call to the clubb API. 2021-10-30 18:53:05 -05003cc2a48057cff47763a8de0fc7a9c2d6bd171782I forgot to add this necessary subroutine call to the clubb API.editclubb_api_module.F90advance_wp2_wp3_module.F9043b0e9b176c2c5f8d2537b61e1f1781a147878961635789347000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixing a minor accounting bug related to the changes in https://github.com/larson-group/clubb/commit/987d63de489d2baa09ad6e1538b2c6dbb7551690. There was some overcounting of the relevant terms. Results are b4b since the l_use_tke_in_wp2_wp3_K_dfsn flag is false. 2021-11-01 12:55:47 -050043b0e9b176c2c5f8d2537b61e1f1781a14787896Fixing a minor accounting bug related to the changes in https://github.com/larson-group/clubb/commit/987d63de489d2baa09ad6e1538b2c6dbb7551690. There was some overcounting of the relevant terms.editadvance_wp2_wp3_module.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F909af53143676f1f868706d65621089805e201becc1635843469000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduApplying the fix for the new CLUBB code to the developmental branch of clubb_silhs_devel. 2021-11-02 03:57:49 -05009af53143676f1f868706d65621089805e201beccApplying the fix for the new CLUBB code to the developmentaleditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F9015dbad3a48411bb76ee616c649eb070e31812d1f1636021064000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a couple of errors. 2021-11-04 05:17:44 -050015dbad3a48411bb76ee616c649eb070e31812d1fI fixed a couple of errors.editcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90advance_windm_edsclrm_module.F900c99971894e34f471bb13a0608799da3e26fd75b1636150605000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have turned the nu_vert_res_dep family of variables into a derived type and that variable is now being passed throughout the CLUBB code, rather than accessing variables through a USE statement. Everything is 100% bit-for-bit! 2021-11-05 17:16:45 -05000c99971894e34f471bb13a0608799da3e26fd75bI have turned the nu_vert_res_dep family of variables into a derivededitdiffusion.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90editparameters_tunable.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90components/cam/src/physics/cam/clubb_intr.F90d537da58fda63a3fd7ba59c3692deb7700c6c5e61636188879000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating for changes to CLUBB. 2021-11-06 03:54:39 -0500d537da58fda63a3fd7ba59c3692deb7700c6c5e6Updating for changes to CLUBB.editcomponents/cam/src/physics/cam/clubb_intr.F90pdf_closure_module.F90stats_zt_module.F905aad62fb6b44998c8eeea4e274d53e9f5b6fda2a1636491816000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90 2021-11-09 15:03:36 -06005aad62fb6b44998c8eeea4e274d53e9f5b6fda2aAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90editstats_zt_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90pdf_closure_module.F900918704e4ca667f2dd901df9481fcab6d04ad5591636651886000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comResolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details 2021-11-11 11:31:26 -06000918704e4ca667f2dd901df9481fcab6d04ad559Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for detailseditpdf_closure_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90pdf_closure_module.F9081d326f9c04198f2635a6b56b25bc395da7414351636664054000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge 2021-11-11 14:54:14 -060081d326f9c04198f2635a6b56b25bc395da741435Included a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after mergeeditpdf_closure_module.F90pdf_closure_module.F90dc3c4b8f58acb3383731109218706676f789be071636664205000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comfixed a typo in pdf_closure_module.f90, line 1284 2021-11-11 14:56:45 -0600dc3c4b8f58acb3383731109218706676f789be07fixed a typo in pdf_closure_module.f90, line 1284editpdf_closure_module.F90pdf_closure_module.F903c5029210448e2a9df59b5757f5cd952d8ab41881636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comSee ticket #958 2021-11-11 15:45:54 -06003c5029210448e2a9df59b5757f5cd952d8ab4188See ticketeditpdf_closure_module.F90stats_clubb_utilities.F90pdf_closure_module.F90a75256d61b53e5e09ec2e386790c89d4e51f04721636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comadded some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk 2021-11-11 15:45:54 -0600a75256d61b53e5e09ec2e386790c89d4e51f0472added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to diskeditpdf_closure_module.F90editstats_clubb_utilities.F90pdf_closure_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F90stats_variables.F90model_flags.F90stats_zt_module.F90a83e91f008656f68d7535574cd90be52d82dd50f1636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comSee respective messages on the issue 958 on date 10/12/2021 2021-11-11 15:45:54 -0600a83e91f008656f68d7535574cd90be52d82dd50fSee respective messages on the issue 958 on date 10/12/2021editadvance_clubb_core_module.F90editmodel_flags.F90editpdf_closure_module.F90editstats_clubb_utilities.F90editstats_variables.F90editstats_zt_module.F90pdf_closure_module.F90stats_zt_module.F900ba99cd44f06718d995fadd8eacb1b6b191c8cf51636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comAdded sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90 2021-11-11 15:45:54 -06000ba99cd44f06718d995fadd8eacb1b6b191c8cf5Added sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90editstats_zt_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90pdf_closure_module.F90f4f26820fd4d03cd818e862b342716e11ea0c6731636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comResolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details 2021-11-11 15:45:54 -0600f4f26820fd4d03cd818e862b342716e11ea0c673Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for detailseditpdf_closure_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90pdf_closure_module.F902b90c415701478f497ef1b01769bff21fd75e46a1636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge 2021-11-11 15:45:54 -06002b90c415701478f497ef1b01769bff21fd75e46aIncluded a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after mergeeditpdf_closure_module.F90pdf_closure_module.F90e235fe78eae6527a511973ecdc46aaa4cb2b23791636667154000http://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrn68997723+JanGrn@users.noreply.github.comfixed a typo in pdf_closure_module.f90, line 1284 2021-11-11 15:45:54 -0600e235fe78eae6527a511973ecdc46aaa4cb2b2379fixed a typo in pdf_closure_module.f90, line 1284editpdf_closure_module.F90advance_clubb_core_module.F90clubb_api_module.F90a3f3633376a9a95a1ddbab690425c6b71a4efbff1637038777000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPassing w_up_in_cloud out of advance_clubb_core 2021-11-15 22:59:37 -0600a3f3633376a9a95a1ddbab690425c6b71a4efbffPassing w_up_in_cloud out of advance_clubb_coreeditadvance_clubb_core_module.F90editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F903eec0569a27a14548a1bd1832acdbc7b660e38171637051928000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating clubb_intr.F90 for the changes to advance_clubb_core_api 2021-11-16 02:38:48 -06003eec0569a27a14548a1bd1832acdbc7b660e3817Updating clubb_intr.F90 for the changes to advance_clubb_core_apieditcomponents/cam/src/physics/cam/clubb_intr.F90stats_variables.F90e1572555370199b4fe0abf791462f1a0830a22f71638465215000http://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldjan.gruenenwald@gmail.comfixed compiler warning regarding w_up_in_cloud 2021-12-02 11:13:35 -0600e1572555370199b4fe0abf791462f1a0830a22f7fixed compiler warning regarding w_up_in_cloudeditstats_variables.F90advance_clubb_core_module.F90fcf74be3a201e5043cabaad104cc37cdbb8c0e9d1638567586000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove clipping from a3_coef. In principle, removing the clipping should reduce noise. In practice, it makes rico noiser but mpace_b less noisy. It also allows twp_ice to run to completion with the gfortran compiler. This commit is BIT_CHANGING. For #965. 2021-12-03 15:39:46 -0600fcf74be3a201e5043cabaad104cc37cdbb8c0e9dRemove clipping from a3_coef.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90fe10a3988ec9c5ae38f9a6521364e5114303dc971639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comThese changes allow you to call the 4 clubb "advance" subroutines in any order that you want to try. In the default order (where the order is the same as found in the current version of the CLUBB master), results are bit-for-bit when compared to CLUBB master. 2021-12-17 17:36:25 -0600fe10a3988ec9c5ae38f9a6521364e5114303dc97These changes allow you to call the 4 clubb "advance" subroutines in anyeditadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90da7e393336c65553c3897fdb66f276cc70ba5a581639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comPlacing the order variables in a nice, convenient place for testing use. 2021-12-17 17:36:25 -0600da7e393336c65553c3897fdb66f276cc70ba5a58Placing the order variables in a nice, convenient place for testing use.editadvance_clubb_core_module.F90advance_clubb_core_module.F908aae767c4fcc474647d6b76867a06416de8057bd1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI reordered advance_clubb_core so that the "Advance xp3" (which is a basic calculation of xp3 by the ansatz by default) section is moved out of the way of the "advance loop" to a point that is after advance_windm_edsclrm (or whatever will be called last in the advance loop. This change does not alter the default results. Everything is still bit-for-bit. 2021-12-17 17:36:25 -06008aae767c4fcc474647d6b76867a06416de8057bdI reordered advance_clubb_core so that the "Advance xp3" (which is aeditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F9089ceef8b3be53379b14beba84d90cef1f9ec9a391639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI am committing the idiot-proofing code that forces l_min_xp2_from_corr_wx and l_enable_relaxed_clipping to have opposite values (one must be true and the other must be false). In this commit, both are set to true, so the code will produce an exception. 2021-12-17 17:36:25 -060089ceef8b3be53379b14beba84d90cef1f9ec9a39I am committing the idiot-proofing code that forces l_min_xp2_from_corr_wxeditadvance_clubb_core_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F9051776de85578ab39a37d41b3a28771e66d58657f1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comI am indenting the portion of the code where the advance subroutines are located within the new ordering loop. 2021-12-17 17:36:25 -060051776de85578ab39a37d41b3a28771e66d58657fI am indenting the portion of the code where the advance subroutineseditadvance_clubb_core_module.F90advance_clubb_core_module.F909ffac7f447029ffd2f8bac3d59fb93019127171e1639784185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comTemporarily commenting out the idiot proofing in order to run some tests ... The results from this branch are still bit-for-bit with the master branch. 2021-12-17 17:36:25 -06009ffac7f447029ffd2f8bac3d59fb93019127171eTemporarily commenting out the idiot proofing in order to run some tests ...editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c587754da66182880513b7c16ccc23c289952ab51639784501000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow official reinstating the idiot-proofing and turning off the l_enable_relaxed_clipping flag. This commit is BIT_CHANGING 2021-12-17 17:41:41 -0600c587754da66182880513b7c16ccc23c289952ab5Now official reinstating the idiot-proofing and turning off theeditadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90b778226f990c7e852735312d0123c76452338a211639787077000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing some idiot proofing in regards to the advance subroutines ordering. No index can have a value of less than 1, greater than 4, and no index can have the same value as any other index. Each adv routine order index must have a unique value. 2021-12-17 18:24:37 -0600b778226f990c7e852735312d0123c76452338a21I am committing some idiot proofing in regards to the advanceeditadvance_clubb_core_module.F90components/cam/src/physics/cam/clubb_intr.F90821bc5a0c2628d9fb13ac3f5933fd1e8fe9d98cb1639788262000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating for the latest version of CLUBB. 2021-12-17 18:44:22 -0600821bc5a0c2628d9fb13ac3f5933fd1e8fe9d98cbUpdating for the latest version of CLUBB.editcomponents/cam/src/physics/cam/clubb_intr.F90advance_clubb_core_module.F90clubb_api_module.F901e234f56b4722f109ec9d657776244a94dadfc181640706464000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating CLUBB to pass uprcp and vprcp into and out of advance_clubb_core. 2021-12-28 09:47:44 -06001e234f56b4722f109ec9d657776244a94dadfc18Updating CLUBB to pass uprcp and vprcp into and out of advance_clubb_core.editadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F90aa0da18281105ee85a148af1640952342bc058ec1640706663000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow that uprcp and vprcp have been passed through advance_clubb_core, I can get rid of this idiot-proofing code that stops the run when l_predict_upwp_vpwp is enabled and the PDF is in the "post" position. 2021-12-28 09:51:03 -0600aa0da18281105ee85a148af1640952342bc058ecNow that uprcp and vprcp have been passed through advance_clubb_core,editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90clubb_api_module.F90af8d23225e3393b52c07fbe123f01444d14124f01640825295000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding more arguments to the argument list for advance_clubb_core so that the model now runs with the PDF in the post position. Result from this change are still bit-for-bit. 2021-12-29 18:48:15 -0600af8d23225e3393b52c07fbe123f01444d14124f0I am adding more arguments to the argument list for advance_clubb_coreeditclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90components/cam/src/physics/cam/clubb_intr.F90f7714d3432c0768eaa82c6a65cf24470fc066b861640884170000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating clubb_intr.F90 to account for recent changes to the call to advance_clubb_core_api. 2021-12-30 11:09:30 -0600f7714d3432c0768eaa82c6a65cf24470fc066b86I am updating clubb_intr.F90 to account for recent changes to the call toeditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90224edcd49d7ddd2da841869bf61e2415a096f1bc1641508280000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding omitted lines to the call to advance_clubb_core_api. 2022-01-06 16:31:20 -0600224edcd49d7ddd2da841869bf61e2415a096f1bcAdding omitted lines to the call to advance_clubb_core_api.editcomponents/cam/src/physics/cam/clubb_intr.F90cime/config/e3sm/machines/config_compilers.xmlcime/config/e3sm/machines/config_machines.xml1b238fec0edfdb459fed113c86476201aaa642e81641511612000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduReverting to using Gfortran 8 temporarily to get things working. 2022-01-06 17:26:52 -06001b238fec0edfdb459fed113c86476201aaa642e8Reverting to using Gfortran 8 temporarily to get things working.editcime/config/e3sm/machines/config_machines.xmleditcime/config/e3sm/machines/config_compilers.xmlmodel_flags.F90af2e320388670ca0a57e2f176c1bc5d627b9098d1641839832000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comInsert print about overwriting default flags with namelist values 2022-01-10 12:37:12 -0600af2e320388670ca0a57e2f176c1bc5d627b9098dInsert print about overwriting default flags with namelist valueseditmodel_flags.F90parameters_tunable.F908f225830ad630ade0b0f818521e3420cf71da15d1641840286000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comInsert print about overwriting default parameters with namelist values 2022-01-10 12:44:46 -06008f225830ad630ade0b0f818521e3420cf71da15dInsert print about overwriting default parameters with namelist valueseditparameters_tunable.F90clubb_api_module.F90f3942b808f629c080b43dfaca5c50c6ce080ef9a1641936564000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking api version of setup_grid. larson-group/clubb#972 2022-01-11 15:29:24 -0600f3942b808f629c080b43dfaca5c50c6ce080ef9aMaking api version of setup_grid. larson-group/clubb#972editclubb_api_module.F90silhs_api_module.F903db947c8588aef8f34322cfdf19bc0b3e0e7be791642027821000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking some paramters_silhs variables available from the silhs api 2022-01-12 16:50:21 -06003db947c8588aef8f34322cfdf19bc0b3e0e7be79Making some paramters_silhs variables available from the silhs apieditsilhs_api_module.F90advance_clubb_core_module.F9065acb9b0c8906c6bd4001aa5eb2cb31b117608351642031683000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comComment out setting of fatal error when l_min_xp2_from_corr_wx = F and l_enable_relaxed_clipping = F. The goal is to allow the clubb_backwards_compatibility_gfortran_test Jenkins test to pass again. For #846. 2022-01-12 17:54:43 -060065acb9b0c8906c6bd4001aa5eb2cb31b11760835Comment out setting of fatal erroreditadvance_clubb_core_module.F90parameters_tunable.F907ec140fc6d8e5e40e4dd195f225d62cdaa8fbabe1642115849000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should be BIT_CHANGING, but only because the value of Cx_min should change in the netcdf file. This will not be answer changing. 2022-01-13 17:17:29 -06007ec140fc6d8e5e40e4dd195f225d62cdaa8fbabeThis should be BIT_CHANGING, but only because the value of Cx_min should change in the netcdf file. This will not be answer changing.editparameters_tunable.F90parameters_tunable.F905bf9927ebb2fdd8006f9aee4380dd467515d2c061642119958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the value of C_invrs_tau_shear from 0.02 to 0.15. This commit is BIT_CHANGING 2022-01-13 18:25:58 -06005bf9927ebb2fdd8006f9aee4380dd467515d2c06Changing the value of C_invrs_tau_shear from 0.02 to 0.15.editparameters_tunable.F90advance_clubb_core_module.F9004279f676a57a9710d4b60f0dafcd0c331a4f18e1642120044000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAvoiding stats call for variables that are not set when l_diag_Lscale_from_tau is not true. 2022-01-13 18:27:24 -060004279f676a57a9710d4b60f0dafcd0c331a4f18eAvoiding stats call for variables that are not set when l_diag_Lscale_from_tau is not true.editadvance_clubb_core_module.F90components/cam/src/physics/cam/clubb_intr.F90ce06da177efa476dc19c2bae854401287ff202891642197360000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdated e3sm to fit the new clubb driver api 2022-01-14 15:56:00 -0600ce06da177efa476dc19c2bae854401287ff20289Updated e3sm to fit the new clubb driver apieditcomponents/cam/src/physics/cam/clubb_intr.F90parameters_tunable.F9003f14dd627f8df25c1e8c40b407a2c60b943f9721642203316000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so that CLUBB (particularly the MC3E case) completes successfully for all compiler tests. You might say that this is BIT_CHANGING. 2022-01-14 17:35:16 -060003f14dd627f8df25c1e8c40b407a2c60b943f972Adjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so thateditparameters_tunable.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90constants_clubb.F90advance_helper_module.F90d8836de198f0c3f3457f195fb08642497dead21b1642358928000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zm This option calls subroutine smooth_heaviside_peskin, which implements the smooth Peskin Heaviside function. The option is turned off for now, and so the results should remain bit for bit. For #965. 2022-01-16 12:48:48 -0600d8836de198f0c3f3457f195fb08642497dead21bAdd l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zmeditclubb_api_module.F90editconstants_clubb.F90editmixing_length.F90editmodel_flags.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90pdf_parameter_module.F90advance_clubb_core_module.F90clubb_api_module.F904d506fc219eb83b1977f318f6b46c3a1f75f09c51642541581000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing column loop into advance_clubb_core, and adding interface for it so that we will not need to update any host models. Everything is bit-for-bit, testing all standalone cases and our cam_coarse res run. larson-group/clubb#972 2022-01-18 15:33:01 -06004d506fc219eb83b1977f318f6b46c3a1f75f09c5Pushing column loop into advance_clubb_core, and adding interface for it so that we will not need to update any host models. Everything is bit-for-bit, testing all standalone cases and our cam_coarse res run. larson-group/clubb#972editclubb_api_module.F90editpdf_parameter_module.F90editadvance_clubb_core_module.F90cime/config/e3sm/machines/config_compilers.xmlace1154e69e709b4d0d8886866e168131e21b42d1642550232000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate the config_compilers.xml for carson. I changed the flag `-lrefblas` to `-lblas` for a fix to the carson nightly tests. 2022-01-18 17:57:12 -0600ace1154e69e709b4d0d8886866e168131e21b42dUpdate the config_compilers.xml for carson.editcime/config/e3sm/machines/config_compilers.xmlclubb_api_module.F90946ca541e9acab72c5dbd52b2df8651bfc0bfb761642618464000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972 2022-01-19 12:54:24 -0600946ca541e9acab72c5dbd52b2df8651bfc0bfb76Adding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F90db4593f73e3fe65968cdee9579c6d6996f3f83c81642631245000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking e3sm use the single column version of advance clubb core directly, since it does not want to use the interface version. larson-group/clubb#972 2022-01-19 16:27:25 -0600db4593f73e3fe65968cdee9579c6d6996f3f83c8Making e3sm use the single column version of advance clubb core directly, since it does not want to use the interface version. larson-group/clubb#972editcomponents/cam/src/physics/cam/clubb_intr.F90clubb_api_module.F907e6744fa4864a0219f8e4a32d0d72fb2664598d91642631316000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972 2022-01-19 16:28:36 -06007e6744fa4864a0219f8e4a32d0d72fb2664598d9Making single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972editclubb_api_module.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/68997723+jangrn68997723+JanGrnhttp://carson.math.uwm.edu/jenkins/user/jan.gruenenwaldjan.gruenenwaldhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/pbroelspbroelsfalse38http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/38/36http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/36/BRANCHorigin/quick_testTESTe3sm_ne4_silhs_run_gfortran_testStarted by user Gunther HueblerhueblerGunther 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pbroelspbroelspbroels17f3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removalf3d45e4040e92e34f6b549a0229302abbabfdb57f3d45e4040e92e34f6b549a0229302abbabfdb57refs/remotes/origin/flag_removal716ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing16ecd9e153a67ca03ff5f5911eee202adab3c4b316ecd9e153a67ca03ff5f5911eee202adab3c4b3refs/remotes/origin/stats_testing20f8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_additionf8cf673e3f3a9375ba57fba3a55961dcb8f4c47cf8cf673e3f3a9375ba57fba3a55961dcb8f4c47crefs/remotes/origin/l_vary_convect_depth_addition1541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break541429a51ebc3f3fd440aca4bbe7d1a36de05030541429a51ebc3f3fd440aca4bbe7d1a36de05030refs/remotes/origin/changes_to_not_break1589a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts89a5bb84d2469f135f7d600724cf0471a85f6cdc89a5bb84d2469f135f7d600724cf0471a85f6cdcrefs/remotes/origin/stats_to_hosts24ab6ac3abff93fdd589da0a7706be51c8d9d34fe8ab6ac3abff93fdd589da0a7706be51c8d9d34fe8refs/remotes/origin/clubb_silhs_develab6ac3abff93fdd589da0a7706be51c8d9d34fe8ab6ac3abff93fdd589da0a7706be51c8d9d34fe8refs/remotes/origin/clubb_silhs_develab6ac3abff93fdd589da0a7706be51c8d9d34fe8ab6ac3abff93fdd589da0a7706be51c8d9d34fe8refs/remotes/origin/clubb_silhs_develhttps://github.com/larson-group/e3sm.gitfalse#246432711949700branch_e3sm_test #2424false249346SUCCESS1633012089644http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/24/advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90model_flags.F90clubb_api_module.F90output_netcdf.F90parameters_tunable.F90stats_clubb_utilities.F90d6771b9ce7eaf03049fb5a7a002028ea528139e31628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -0500d6771b9ce7eaf03049fb5a7a002028ea528139e3Eliminating l_single_C2_Skw flag.editparameters_tunable.F90editstats_clubb_utilities.F90editadvance_xp2_xpyp_module.F90editparameter_indices.F90editmodel_flags.F90editoutput_netcdf.F90editclubb_api_module.F90editadvance_clubb_core_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90fff33198f774b25a969928de6793f4d56edeec231628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -0500fff33198f774b25a969928de6793f4d56edeec23Eliminating l_single_C2_Skw flag.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90editoutput_2D_samples_module.F90mixing_length.F906a1e0902cf77eeba533be047f9e84b621f397bce1628883473000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_include_ice and sat_ice_ratio. For ticket #926 Results are BFB identical. 2021-08-13 14:37:53 -05006a1e0902cf77eeba533be047f9e84b621f397bceEliminating l_include_ice and sat_ice_ratio.editmixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F905a57001670ee7b7d03e59cd02523bb9828e354821629213967000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_update_pressure flag. For ticket #926. Results are confirmed to be BFB identical. 2021-08-17 10:26:07 -05005a57001670ee7b7d03e59cd02523bb9828e35482Eliminating l_update_pressure flag.editadvance_clubb_core_module.F90editmodel_flags.F90editclubb_api_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_xm_wpxp_module.F90d0851f0cae643c24780d106d61a78fb1593c9b5f1629473006000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_upwind_wpxp_ta flag. For issue #926. Results are confirmed BFB identical. 2021-08-20 10:23:26 -0500d0851f0cae643c24780d106d61a78fb1593c9b5fEliminating l_upwind_wpxp_ta flag.editadvance_clubb_core_module.F90editclubb_api_module.F90editmodel_flags.F90editadvance_xm_wpxp_module.F90jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilee9a34488c0c7252ef8603a1663cd2139cad6c1201629829101000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comFixing small pathing error in log reading step. larson-group/sys_admin#735 2021-08-24 13:18:21 -0500e9a34488c0c7252ef8603a1663cd2139cad6c120Fixing small pathing error in log reading step. larson-group/sys_admin#735editjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfileclip_explicit.F900578ed505c5ca0ef84141586d6c18195c4e28fdf1629917460000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the surface clipping coefficient... ...to avoid MC3E failure with PGI compiler. I find all cases run successfully with this coefficient, with ifort, gfortran, and PGI. 2021-08-25 13:51:00 -05000578ed505c5ca0ef84141586d6c18195c4e28fdfUpdating the surface clipping coefficient...editclip_explicit.F90clip_explicit.F908a6392b854e8b0d8c8b72f94aa18dce014c77b6b1629917460000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the surface clipping coefficient... ...to avoid MC3E failure with PGI compiler. I find all cases run successfully with this coefficient, with ifort, gfortran, and PGI. 2021-08-25 13:51:00 -05008a6392b854e8b0d8c8b72f94aa18dce014c77b6bUpdating the surface clipping coefficient...editclip_explicit.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90sfc_varnce_module.F9064c2cdc41031f3088268356bf8e8149aa33c54591630332047000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comAdding in l_vary_convect_depth as requested. For ticket #905. Results are confirmed to be BFB identical. 2021-08-30 09:00:47 -050064c2cdc41031f3088268356bf8e8149aa33c5459Adding in l_vary_convect_depth as requested.editclubb_api_module.F90editsfc_varnce_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90advance_clubb_core_module.F90model_flags.F90sfc_varnce_module.F90clubb_api_module.F90cebe3ad6391c3d2ba0720cbe910b43c78b9ef0f61630332047000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comAdding in l_vary_convect_depth as requested. For ticket #905. Results are confirmed to be BFB identical. 2021-08-30 09:00:47 -0500cebe3ad6391c3d2ba0720cbe910b43c78b9ef0f6Adding in l_vary_convect_depth as requested.editsfc_varnce_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90editclubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F90724446ae50688335e193fde8f8b56947ba78b3c41630332050000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comReflecting changes made to clubb in host models 2021-08-30 09:00:50 -0500724446ae50688335e193fde8f8b56947ba78b3c4Reflecting changes made to clubb in host modelseditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/sfc_varnce_module.F909879587e179912038c6af5152520626b117dd84c1630332050000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comAdding clubb directory for testing 2021-08-30 09:00:50 -05009879587e179912038c6af5152520626b117dd84cAdding clubb directory for testingeditcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/sfc_varnce_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/sfc_varnce_module.F9093d5d8d4ec44e318fa3194a48cae2e41f9f61a901630332050000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comRemoving clubb and silhs directory for tonight's merge 2021-08-30 09:00:50 -050093d5d8d4ec44e318fa3194a48cae2e41f9f61a90Removing clubb and silhs directory for tonight's mergeeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/sfc_varnce_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90advance_clubb_core_module.F901016f8e33ad0f6476ee40bc5dd690451bc0b869b1630547434000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving a couple of unused parameters from use statement. These are not caught by the gfortran compiler for whatever reason but the ifort compiler warned about them. 2021-09-01 20:50:34 -05001016f8e33ad0f6476ee40bc5dd690451bc0b869bRemoving a couple of unused parameters from use statement.editadvance_clubb_core_module.F90advance_clubb_core_module.F90b24820513db462e4a5b1cae18b4a901d7e9bd8a21630547434000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving a couple of unused parameters from use statement. These are not caught by the gfortran compiler for whatever reason but the ifort compiler warned about them. 2021-09-01 20:50:34 -0500b24820513db462e4a5b1cae18b4a901d7e9bd8a2Removing a couple of unused parameters from use statement.editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90clip_explicit.F90advance_xp2_xpyp_module.F90dafbfbd0f0baf9f01fcb08b22f2a17333606a56a1630599690000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduPushing k loop down through clip_variance_level. This change is for the files advance_wp2_wp3_module and advance_xp2_xpyp_module. In order to make this change, I added a new variable in the upper-level subroutine that is an array version of the variable 'threshold' and passed it along to the lower subroutine. The loop is still present in order to calculate the values of threshold, however, the calls to the subroutine is outside of the loop. The only calculations inside the loop is for and intrensic function, max. All results are BFB identical for default case along with l_stats_samp being set to true. For ticket #951. 2021-09-02 11:21:30 -0500dafbfbd0f0baf9f01fcb08b22f2a17333606a56aPushing k loop down through clip_variance_level.editclip_explicit.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90clip_explicit.F90ed78e345853d9af1f71e7300220392469b690b671630599690000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduPushing k loop down through clip_variance_level. This change is for the files advance_wp2_wp3_module and advance_xp2_xpyp_module. In order to make this change, I added a new variable in the upper-level subroutine that is an array version of the variable 'threshold' and passed it along to the lower subroutine. The loop is still present in order to calculate the values of threshold, however, the calls to the subroutine is outside of the loop. The only calculations inside the loop is for and intrensic function, max. All results are BFB identical for default case along with l_stats_samp being set to true. For ticket #951. 2021-09-02 11:21:30 -0500ed78e345853d9af1f71e7300220392469b690b67Pushing k loop down through clip_variance_level.editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editclip_explicit.F90parameters_tunable.F9072b5c72ac5985e9a585e44d615243bcbc6582ae81630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUdpates to make it possible for us to keep certain parameters equal to each other during tuning. Includes: * a new subroutine in parameters_tunable.F90 that will read a new namelist in the error_*.in files * updates to src/error.F90 to make sure the intended parameters are held equal throughout the tuning run * updates to src.error.F90 to print the variables that were held equal at the end of the tuning run, together with their beginning and ending values, and updates to ensure that the new tuned values are copied into the new paramters_tunable_*.in file so they can be used for plotting or restarting the tuner. * includes several simple error checks See #939. 2021-09-02 19:47:00 -050072b5c72ac5985e9a585e44d615243bcbc6582ae8Udpates to make it possible for us to keep certain parameters equal to each other during tuning.editparameters_tunable.F90parameters_tunable.F90747e30bcbd918a4dde0b1491b3ebfeaebdac9b591630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUdpates to make it possible for us to keep certain parameters equal to each other during tuning. Includes: * a new subroutine in parameters_tunable.F90 that will read a new namelist in the error_*.in files * updates to src/error.F90 to make sure the intended parameters are held equal throughout the tuning run * updates to src.error.F90 to print the variables that were held equal at the end of the tuning run, together with their beginning and ending values, and updates to ensure that the new tuned values are copied into the new paramters_tunable_*.in file so they can be used for plotting or restarting the tuner. * includes several simple error checks See #939. 2021-09-02 19:47:00 -0500747e30bcbd918a4dde0b1491b3ebfeaebdac9b59Udpates to make it possible for us to keep certain parameters equal to each other during tuning.editparameters_tunable.F90parameters_tunable.F9094146014302b085c13961f6e0eab2dadedca02431630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFurther tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included. See #939. 2021-09-02 19:47:00 -050094146014302b085c13961f6e0eab2dadedca0243Further tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included.editparameters_tunable.F90parameters_tunable.F90c787271c923e08a7bfa8db303bfee6588f840abf1630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFurther tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included. See #939. 2021-09-02 19:47:00 -0500c787271c923e08a7bfa8db303bfee6588f840abfFurther tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included.editparameters_tunable.F90parameters_tunable.F905c73ee72a0175108bcc4b103ebd44c696a92a50a1630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating some comments related to the tuner updates. See #939. 2021-09-02 19:47:00 -05005c73ee72a0175108bcc4b103ebd44c696a92a50aUpdating some comments related to the tuner updates.editparameters_tunable.F90parameters_tunable.F9068848116981910e70725c5fcc14d78e78f3f87ed1630630020000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating some comments related to the tuner updates. See #939. 2021-09-02 19:47:00 -050068848116981910e70725c5fcc14d78e78f3f87edUpdating some comments related to the tuner updates.editparameters_tunable.F90advance_clubb_core_module.F903b29c310d2e96d7e9fe9e5078ac6ee6a2f2fb7591631320025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space to trigger autoupdate. larson-group/sys_admin#755 2021-09-10 19:27:05 -05003b29c310d2e96d7e9fe9e5078ac6ee6a2f2fb759Adding space to trigger autoupdate. larson-group/sys_admin#755editadvance_clubb_core_module.F90advance_clubb_core_module.F90ed5bed1dc8054413f5792e6d3abe64789523d7301631320025000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space to trigger autoupdate. larson-group/sys_admin#755 2021-09-10 19:27:05 -0500ed5bed1dc8054413f5792e6d3abe64789523d730Adding space to trigger autoupdate. larson-group/sys_admin#755editadvance_clubb_core_module.F90advance_clubb_core_module.F90a7a1f100a8a3938b9a1717165b7daa1a6858c5141631562742000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove space to trigger autoupdate. larson-group/sys_admin#755 2021-09-13 14:52:22 -0500a7a1f100a8a3938b9a1717165b7daa1a6858c514Remove space to trigger autoupdate. larson-group/sys_admin#755editadvance_clubb_core_module.F90advance_clubb_core_module.F90579ae7bf3eba658a981d771ded27f16906ed78961631743991000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd space to trigger nightly tests. For larson-group/sys_admin#755. 2021-09-15 17:13:11 -0500579ae7bf3eba658a981d771ded27f16906ed7896Add space to trigger nightly tests. For larson-group/sys_admin#755.editadvance_clubb_core_module.F90advance_clubb_core_module.F903f4274296a097f61485983e5106c6480143821141632526019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug that was introduced in 6b0348e, where the logical flow was distorted within the trapezoidal rule code. This change does not affect standard CLUBB, where the trapezoidal rule is not used by default. However, it is important for CAM-CLUBB. 2021-09-24 18:26:59 -05003f4274296a097f61485983e5106c648014382114I am fixing a bug that was introduced in 6b0348e, where the logicaleditadvance_clubb_core_module.F90githttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/pbroelspbroelsfalse25http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/25/23http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/23/BRANCHorigin/clubb_silhs_develTESTe3sm_run_gfortran_testStarted by user 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#2323false238453SUCCESS1629824962808http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/23/jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile11681a8101a9f4d1d6d7ba911b631247ccaf38281629824263000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comChanging log reading proceedure since run logs for standard run test are not compressed. larson-group/sys_admin#735 2021-08-24 11:57:43 -050011681a8101a9f4d1d6d7ba911b631247ccaf3828Changing log reading proceedure since run logs for standard run test are not compressed. larson-group/sys_admin#735editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldchttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/nselkenselkehttp://carson.math.uwm.edu/jenkins/user/roessle9roessle9http://carson.math.uwm.edu/jenkins/user/pbroelspbroelshttp://carson.math.uwm.edu/jenkins/user/nchiefnchiefhttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/weberjkweberjkhttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/strikestrikehttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false24http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/24/22http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/22/BRANCHorigin/clubb_silhs_develTESTe3sm_run_gfortran_testStarted by user 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#2222false228451FAILURE1629824269863http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/22/http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldchttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/nselkenselkehttp://carson.math.uwm.edu/jenkins/user/roessle9roessle9http://carson.math.uwm.edu/jenkins/user/pbroelspbroelshttp://carson.math.uwm.edu/jenkins/user/nchiefnchiefhttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/weberjkweberjkhttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/strikestrikehttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false23http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/23/21http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/21/BRANCHorigin/clubb_silhs_develTESTe3sm_run_gfortran_testStarted by user 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#2121false218449FAILURE1629821058738http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/21/advance_clubb_core_module.F9078cfb14b8fa5de38bd6fb61a3f5aca221d6011e51436554493000http://carson.math.uwm.edu/jenkins/user/weberjkweberjkweberjk@uwm.eduFor clubb:ticket:770, the Oracle compiler was throwing a floating point exception here. wpxp2 and xp2 were being fed in as Nans. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7819 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6a633ba12a025460419d06b5f05531cb60776dff 2015-07-10 18:54:53 +000078cfb14b8fa5de38bd6fb61a3f5aca221d6011e5For clubb:ticket:770, the Oracle compiler was throwing a floating point exception here. wpxp2 and xp2 were being fed in as Nans.editadvance_clubb_core_module.F90calc_roots.F9023b83be5cb345e758984087986aa513cfe770db81436899091000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe new file calc_roots.F90 contains functions that solve for the roots of a cubic polynomial (function cubic_solve), the roots of a quadratic polynomial (function quadratic_solve), as well as cube root (function cube_root, which is called by the function that solves the cubic polynomial). These are general purpose functions which can aid in many solutions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7827 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9320a395d5164202f5bbe38aa3067fa66372035d 2015-07-14 18:38:11 +000023b83be5cb345e758984087986aa513cfe770db8The new file calc_roots.F90 contains functions that solve for the roots of aaddcalc_roots.F90precipitation_fraction.F90setup_clubb_pdf_params.F90cea3875a9022bfe5bbb7bc6d231f689a42ff91751438106080000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI tweaked the precipitation fraction code so that the weighted ith PDF component preciptation fractions (mixt_frac_i * precip_frac_i) remain proportional to each other when overall precipitation fraction is not equal to the sum of the two weighted component precipitation fractions (e.g. while there can be some slight discrepancies in a standalone run, but this will have the greatest effect when precipitation fraction is supplied by the LES). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7868 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d012def7452f348a844a9f24849730ecd58eb53e 2015-07-28 17:54:40 +0000cea3875a9022bfe5bbb7bc6d231f689a42ff9175I tweaked the precipitation fraction code so that the weighted ith PDF componenteditprecipitation_fraction.F90editsetup_clubb_pdf_params.F90stats_variables.F90stats_clubb_utilities.F90stats_lh_zt_module.F908dd99699dcf36a52272f3ed4fe69e214ff81b6621439353819000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:740, I added an output for the "sampling fractions" in each category, which are the SILHS approximations of S_j. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7881 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3809b00b3a69243036f98e13528481d72fa50621 2015-08-12 04:30:19 +00008dd99699dcf36a52272f3ed4fe69e214ff81b662For clubb:ticket:740, I added an output for the "sampling fractions" in each category, which are the SILHS approximations of S_j.editstats_lh_zt_module.F90editstats_variables.F90editstats_clubb_utilities.F90pdf_closure_module.F900f34241b7bbf1ccf0805b6357bea04573a51d5c11442593771000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated pdf_closure_module.F90 by integrating changes I made in the Brian_special_input_fields_r7565 branch. The changes are formatting, variable names, and some small improvements to the 3-D Luhar closure. This does not effect the default ADG1 closure. The results in GrADS output files from the this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7899 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b74c29c8fdd46473694efb1b2c91a66bd22a85c2 2015-09-18 16:29:31 +00000f34241b7bbf1ccf0805b6357bea04573a51d5c1I updated pdf_closure_module.F90 by integrating changes I made in theeditpdf_closure_module.F90clubb_api_module.F90ab2e38486b0a1adf323e8b58922473771113f37a1446161772000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:36: I meant to apply clubb:r7916 to the trunk. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7917 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4d6ddb360ce0a8fdd50b24bc2d19e0522f2c8bf8 2015-10-29 23:36:12 +0000ab2e38486b0a1adf323e8b58922473771113f37aFor cam:ticket:36:editclubb_api_module.F90clubb_api_module.F90e917230571da0d9992cebe933575a3a0f058bc411446496362000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:36#comment:132, I removed `gr` from the use statement in `setup_grid_heights_api`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7918 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c625a4f22f57a4ae514f60a2aa8769a678a855c3 2015-11-02 20:32:42 +0000e917230571da0d9992cebe933575a3a0f058bc41For cam:ticket:36#comment:132, I removed `gr` from the use statement in `setup_grid_heights_api`.editclubb_api_module.F90endian.F90parameters_model.F900f06bb5311bde1161de7347d363d3a57d551faf11446868880000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:773, I fixed some unsoundness in our code regarding kinds, specifically in `parameters_model.F90` and `endian.F90`. GrADS output is bin-diff identical for all priority cases! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7920 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 64a44bab443b257dc08482146a99a9f3b701a694 2015-11-07 04:01:20 +00000f06bb5311bde1161de7347d363d3a57d551faf1For clubb:ticket:773, I fixed some unsoundness in our code regarding kinds, specifically in `parameters_model.F90` and `endian.F90`.editendian.F90editparameters_model.F90clubb_api_module.F90e6bacda8d9b14bf0886c9c840ae2a9892a46188e1448063758000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:41, the change in clubb:r7921 should be applied to the trunk as well. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7931 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a44255272b0264ffa148779ae06623ea74a061d3 2015-11-20 23:55:58 +0000e6bacda8d9b14bf0886c9c840ae2a9892a46188eFor cam:ticket:41, the change in clubb:r7921 should be applied to the trunk as well.editclubb_api_module.F90code_timer_module.F90e48ac26999cd9b7c4cd6df95028cf842693bbee71448328589000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:775: I dug up some old timing code from an obsolete CLUBB branch and found that it gives accurate results. Therefore, I am committing it to the trunk of CLUBB, inside the `CLUBB_core` directory. It is not used right now; it is simply designed to be a utility for code analysis. I cleaned up the code and added comments to make it suitable for the "official" CLUBB. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7934 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 10dcb3e8aaf7b5d36530bcbbb34e3787686f6403 2015-11-24 01:29:49 +0000e48ac26999cd9b7c4cd6df95028cf842693bbee7For clubb:ticket:775:addcode_timer_module.F90code_timer_module.F90de48143312d64ba3c84d8363ed7c164ec1edb73d1448654722000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:775: I found a better (more precise) way to time code using `cpu_time`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7939 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ba495771c41d466065d79323fcb3e2065ea870e1 2015-11-27 20:05:22 +0000de48143312d64ba3c84d8363ed7c164ec1edb73dFor clubb:ticket:775:editcode_timer_module.F90code_timer_module.F90dd1186e7c5f4efe426972dc7634d8549de4414b41448654880000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduMisc. code cleanup git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7940 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d06b87ca91e3cbb735187dc2534e6a736e46f557 2015-11-27 20:08:00 +0000dd1186e7c5f4efe426972dc7634d8549de4414b4Misc. code cleanupeditcode_timer_module.F90precipitation_fraction.F906915abd02fc590a68cf65e0b1f078fb9044461e51451599338000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating default CLUBB to use the same hydrometeor PDF parameters that are used in the Brian_special_input_fields_r7465 branch as well as in the paper on Hydrometeor PDF shapes. There are small changes to all cases that use analytic microphysics or SILHS. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7963 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 92187f595acfabf21a05e04d24a46688c868e428 2015-12-31 22:02:18 +00006915abd02fc590a68cf65e0b1f078fb9044461e5I am updating default CLUBB to use the same hydrometeor PDF parameters that areeditprecipitation_fraction.F90advance_clubb_core_module.F90b52d3abbdcfaf6908711a08b85a1c64097ceac751454030468000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:50: I added some fool-proofing to the code that stops the run with an error if the user sets `l_Lscale_plume_centered = .true.` and `l_avg_Lscale = .false.`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7972 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f11ede285a96bf2c04bdd7471bc0f7359b194a80 2016-01-29 01:21:08 +0000b52d3abbdcfaf6908711a08b85a1c64097ceac75For cam:ticket:50:editadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90c4366bf950382ebbc45905a6a961de1df29c3d7c1455745962000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:52: I moved `l_stability_correct_tau_zm` to `model_flags.F90`, and made it a variable instead of a compile-time constant. This should be the only change we need to make to CLUBB to do away with the branch. CLUBB standalone output is bin-diff identical for a fine selection of CLUBB cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7978 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 25a8690cba226668f8eb62e75b86b6a43782a8c2 2016-02-17 21:52:42 +0000c4366bf950382ebbc45905a6a961de1df29c3d7cFor cam:ticket:52:editadvance_clubb_core_module.F90editmodel_flags.F90clubb_api_module.F90afd352985083952f77c4cbcfc616f482aa4346711455747785000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:52, I added some parameter indices to the API. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7980 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6e6fa65c78c57c47d118dc5825f370b620bb56cd 2016-02-17 22:23:05 +0000afd352985083952f77c4cbcfc616f482aa434671For cam:ticket:52, I added some parameter indices to the API.editclubb_api_module.F90clubb_api_module.F90cd647d184035d2add22118d108274fe8e330b12c1455748595000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI forgot a parameter! cam:ticket:52. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7982 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2f2dc8e11b099c5aea3986de77b291e945720ec7 2016-02-17 22:36:35 +0000cd647d184035d2add22118d108274fe8e330b12cI forgot a parameter!editclubb_api_module.F90stats_zm_module.F90stats_variables.F9061f401a444b13eb465b007134bbfe7ed447060351456103321000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:753: I added statistical output for the SILHS estimates of `rtp2_mc`, `thlp2_mc`, `wprtp_mc`, `wpthlp_mc`, and `rtpthlp_mc`. Output ought to be bin-diff identical for all cases, aside from the new outputs (which are not output by default). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7987 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a8e9a4db95398ec9024a1e17f0763969a102fc36 2016-02-22 01:08:41 +000061f401a444b13eb465b007134bbfe7ed44706035For clubb:ticket:753:editstats_zm_module.F90editstats_variables.F90advance_clubb_core_module.F90interpolation.F90model_flags.F905de08c8becc16a5b83c3bf0a6908bcaeb6cdecd61456190792000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: I merged in NCAR's changes to `advance_clubb_core_module.F90` and `interpolation.F90`. This is probably at least half the battle. I added some flags to `model_flags.F90`. They are set to the values that preserve answers in CLUBB standalone. Output is bin-diff identical for a comprehensive selection of test cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7989 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 09326d9dfe1aaff864a12cd1c7c0773002d912f4 2016-02-23 01:26:32 +00005de08c8becc16a5b83c3bf0a6908bcaeb6cdecd6For clubb:ticket:782:editadvance_clubb_core_module.F90editinterpolation.F90editmodel_flags.F90advance_clubb_core_module.F901e6552e61c15a0c39c0a556625694c2dc50d00c61456190930000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI forgot a flag. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7990 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 36100d67534c0bce1c278b7bd6da1e9e8b3931a7 2016-02-23 01:28:50 +00001e6552e61c15a0c39c0a556625694c2dc50d00c6I forgot a flag.editadvance_clubb_core_module.F90saturation.F90model_flags.F90clubb_api_module.F90mt95.f90csr_matrix_module.F90pdf_parameter_module.F90stats_variables.F90parameters_tunable.F90sponge_layer_damping.F90parameters_model.F90gmres_cache.F90variables_prognostic_module.F905d190297215985f31583c4a206fc173b56bc52e81456259763000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: I completed merging in NCAR's changes. The changes include a LOT of missing `!$omp threadprivate` directives. I wonder how they manage to find these. Maybe they have a script? I also eliminated all CAM preprocessors from `parameters_tunable.F90`!! Output is bin-diff identical for a selection of cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7991 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7ac98ef43fe88b5c9936db4becc53e2579b172a7 2016-02-23 20:36:03 +00005d190297215985f31583c4a206fc173b56bc52e8For clubb:ticket:782:editcsr_matrix_module.F90editvariables_prognostic_module.F90editparameters_model.F90editpdf_parameter_module.F90editstats_variables.F90editmt95.f90editsaturation.F90editclubb_api_module.F90editsponge_layer_damping.F90editmodel_flags.F90editparameters_tunable.F90editgmres_cache.F90clubb_api_module.F9068c38299b84040772fd03108779fc63f5c0e34851456268330000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:55, I added some parameters to CLUBB's API. Output is highly unlikely to change in any configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7992 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 328e2a42184ddd72b4d584391edef45de2285526 2016-02-23 22:58:50 +000068c38299b84040772fd03108779fc63f5c0e3485For cam:ticket:55, I added some parameters to CLUBB's API.editclubb_api_module.F90clubb_api_module.F9026ad189a39a78c215af30e67ac15fd2369ed90911456269331000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:55: Apprarently, I had some indices declared twice. Also apparently, `gfortran` accepts this but Intel doesn't. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7993 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a47cfe4bd86442b727ba24412b5a52f48e798945 2016-02-23 23:15:31 +000026ad189a39a78c215af30e67ac15fd2369ed9091For cam:ticket:55:editclubb_api_module.F90stats_clubb_utilities.F90clubb_api_module.F90corr_varnce_module.F9056f87be8850c283ce00a8d858ec00d2f6b4af11c1457044956000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI cleaned up some warnings from the Mac compiler. (build:14977) Output ought to be bin-diff identical for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8001 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b7d4d071dbdd3704e5fe09b274aa82de9b146fd 2016-03-03 22:42:36 +000056f87be8850c283ce00a8d858ec00d2f6b4af11cI cleaned up some warnings from the Mac compiler. (build:14977)editstats_clubb_utilities.F90editclubb_api_module.F90editcorr_varnce_module.F90parameters_tunable.F90parameter_indices.F908025ab1342a7a1b3e085b1783856426c1a92a89e1457567876000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:785, I renamed `initvars` to `clubb_params_nl`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8010 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bd3995e594614e659c8491539a29167fbd4cb318 2016-03-09 23:57:56 +00008025ab1342a7a1b3e085b1783856426c1a92a89eFor clubb:ticket:785, I renamed `initvars` to `clubb_params_nl`.editparameter_indices.F90editparameters_tunable.F90model_flags.F901889cc7cdabe616805708d52c269b35192b3ec771457568472000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:785: I renamed `silhs_flags_nl` to `configurable_silhs_flags_nl` and `configurable_model_flags` (only the namelist) to `configurable_clubb_flags_nl`. The output from this revision is bin-for-diff identical to the output from clubb:r8007. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8011 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3e443cf08251c8b4b090c622ad44c54933323ea3 2016-03-10 00:07:52 +00001889cc7cdabe616805708d52c269b35192b3ec77For clubb:ticket:785:editmodel_flags.F90output_grads.F90input_reader.F90stats_type.F90stats_type_utilities.F90csr_matrix_module.F90stat_file_module.F90stats_clubb_utilities.F90grid_class.F90sponge_layer_damping.F90gmres_cache.F90c44ad4365657039db80b07ad3e2240211c9c80641457744058000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:779: I replaced `pointer` with `allocatable` in (almost) the entirety of `CLUBB_core`. All compilers in `compiler_tests.bash` can compile this version of CLUBB and none emit any warnings related to these changes. Further, with `gfortran`, output is bin-diff identical for all cases. CLUBB has officially joined the 21st century! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8014 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b0a141cc435acc5e0343523eb79307d33da7a711 2016-03-12 00:54:18 +0000c44ad4365657039db80b07ad3e2240211c9c8064For clubb:ticket:779:editstats_clubb_utilities.F90editstats_type.F90editsponge_layer_damping.F90editstats_type_utilities.F90editcsr_matrix_module.F90editgmres_cache.F90editinput_reader.F90editgrid_class.F90editstat_file_module.F90editoutput_grads.F90stats_clubb_utilities.F90variables_diagnostic_module.F90variables_prognostic_module.F90cac8541445e3db6df096fc04655670471a646ae91458599317000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:786: I am attempting to fix two related problems in CLUBB: 1. We need to make sure CLUBB is completely cleaned up before exiting `run_clubb`, otherwise we have memory leaks and potential errors. 2. We should make sure variables are allocated before we attempt to deallocate them. For (1), I refactored CLUBB's cleanup code into a single subroutine and am calling it in some places that a "return" statement appears. For (2), I attempted to add some appropriate conditions to look for before deallocating variables. Output ought to be bin-diff identical. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8020 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 224a4ecb0e3aebba959a50ffb56f2975de192aff 2016-03-21 22:28:37 +0000cac8541445e3db6df096fc04655670471a646ae9For clubb:ticket:786:editvariables_prognostic_module.F90editvariables_diagnostic_module.F90editstats_clubb_utilities.F90stats_clubb_utilities.F902be0615c817b980139e9df1bbc39b5bd91285cfb1458850471000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:786: I fixed two tuner related problems. I made the SILHS parameters namelist optional, so that a warning message is simply printed if the namelist is not found. I'm not particularly fond of this solution, but the difficult alternative is to track down the places in the tuner where the SILHS namelist needs to be placed. Maybe some other day. I also deallocated a variable in SILHS that wasn't deallocated before. Output ought not to change. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8023 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ccef9fe7bcd6531d3a6903fbe2c6a8db763830ea 2016-03-24 20:14:31 +00002be0615c817b980139e9df1bbc39b5bd91285cfbFor clubb:ticket:786:editstats_clubb_utilities.F90clubb_api_module.F9076ffc1e665c4e26d1668c2efc9df9cdb5bbc142f1459894240000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782, I added all CLUBB's parameter indices to the API. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8029 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 129197ab3782d5708e97fa61b72e3e1d6bc29cdd 2016-04-05 22:10:40 +000076ffc1e665c4e26d1668c2efc9df9cdb5bbc142fFor clubb:ticket:782, I added all CLUBB's parameter indices to the API.editclubb_api_module.F90parameters_tunable.F903a6793ec01bbe473ddf6d0583c662432bbbc45071459899281000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduhelpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8030 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f1a1a51bab997a8957a9878542c03b55d2eae5ac 2016-04-05 23:34:41 +00003a6793ec01bbe473ddf6d0583c662432bbbc4507helpful noteeditparameters_tunable.F90parameters_tunable.F904d2d0eb0e397482dacaa804e257fdad814b540fc1459899376000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.edumore helpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8031 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 24e0650cb14be00b26b35e9314c0886b249a6099 2016-04-05 23:36:16 +00004d2d0eb0e397482dacaa804e257fdad814b540fcmore helpful noteeditparameters_tunable.F90parameters_tunable.F90ee33663d3cd6174fe4feefaec16f7a837f227bcb1459899640000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.edumost helpful note git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8032 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fa7f961b7b520e654a30096415d1ba60fd4f1807 2016-04-05 23:40:40 +0000ee33663d3cd6174fe4feefaec16f7a837f227bcbmost helpful noteeditparameters_tunable.F90stats_zm_module.F90stats_zt_module.F9072529d6d77d14863829ec0b2dd173e88561e8ac71460749629000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:56: While looking through plots, I noticed that for some reason, CLUBB output files list `cloud_frac` as having units of "count", which in fact it is a fraction between 0 and 1. I have changed the units to be "-", as is done elsewhere. Note that this commit is BIT_CHANGING, but only because of the metadata change. Numerical values of all variables should be identical. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8039 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 386dd79390ff0720658e567be846b45f1267b596 2016-04-15 19:47:09 +000072529d6d77d14863829ec0b2dd173e88561e8ac7For cam:ticket:56:editstats_zt_module.F90editstats_zm_module.F90advance_clubb_core_module.F90c6500cfe559a78be80cba8e53e2fdd19ca853f3b1461627613000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduWhile working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation. This shouldn't change answers. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8051 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56c350b1b4e1bd8cbc7337c7f3d3b5d5b6a7f7b3 2016-04-25 23:40:13 +0000c6500cfe559a78be80cba8e53e2fdd19ca853f3bWhile working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation.editadvance_clubb_core_module.F90advance_helper_module.F90cb412fb54cc283d26552c72d98c21a225df26cc81461629167000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduDat crazy indentation, though... git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8052 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bbb1955eaad91f06f5fea34e40eb6ea168b7d959 2016-04-26 00:06:07 +0000cb412fb54cc283d26552c72d98c21a225df26cc8Dat crazy indentation, though...editadvance_helper_module.F90advance_helper_module.F90fb63f2634b6063fef6e6aaa7cd11a2c0175165011461698001000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`. Output is bin-diff identical for a test case. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8053 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6131eda3cc0829d2900c24ffeac3e1cfdf9196f 2016-04-26 19:13:21 +0000fb63f2634b6063fef6e6aaa7cd11a2c017516501For cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`.editadvance_helper_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F9042e5348649c5fe2849b9f3f4f75a64cee941e8421461713891000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added an option to compute `C7_Skw_fnc` based on the Richardson number. This change is wrapped in a flag, `l_use_C7_Richardson`, which is false by default. Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8056 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f545aa262b505691bcbc7a6a0dff5a6561bdb64d 2016-04-26 23:38:11 +000042e5348649c5fe2849b9f3f4f75a64cee941e842For cam:ticket:59:editadvance_clubb_core_module.F90editmodel_flags.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90model_flags.F90185167896321573e6a27bb1994ac28aa75203fed1461880889000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am incorporating Vince's changes into the trunk. This commit introduces a new flag, `l_damp_wp2_using_em`, which, if true, will use a dissipation formula based on `em` in the `wp2` equation. The flag is false by default, and output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8066 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 39fb65cf92cbd275653e062e6e5603abc28dd1bd 2016-04-28 22:01:29 +0000185167896321573e6a27bb1994ac28aa75203fedFor cam:ticket:59:editmodel_flags.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F9029d9ce8ac3458638923b4ac461a5a569774cd6041461883559000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added a check that ensures `C1=C14` and `l_stability_correct_tau_zm=F` if `l_damp_wp2_using_em=T`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8067 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 90a2faf25065f00bda5220403e7cdb654c114f50 2016-04-28 22:45:59 +000029d9ce8ac3458638923b4ac461a5a569774cd604For cam:ticket:59:editadvance_clubb_core_module.F90stats_zm_module.F90stats_variables.F90advance_xm_wpxp_module.F90c32284c78f7aa9070afc4f0b61bed73ccf7ccdf31461896081000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I added a new output for Richardson number. It is not added to the default output file, so output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8068 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cad331d6bd01ccc55b8b797a5f502ed45477530f 2016-04-29 02:14:41 +0000c32284c78f7aa9070afc4f0b61bed73ccf7ccdf3For cam:ticket:59, I added a new output for Richardson number.editadvance_xm_wpxp_module.F90editstats_zm_module.F90editstats_variables.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90advance_helper_module.F909d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe61461965345000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am adding an option to use a different formulation of `brunt_vaisala_frequency_sqd` in saturated air. This formula comes from Durran and Klemp (1982). As always, the change is wrapped in a flag, and output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8069 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41dcf2571aeebbf3725a54ad3c0da5e062769577 2016-04-29 21:29:05 +00009d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe6For cam:ticket:59:editadvance_xm_wpxp_module.F90editadvance_helper_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_helper_module.F909e607955d0c529d4ef6b36f9378b6d08fa21137c1461965528000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduPer cam:ticket:59#comment:21, using `T_in_K_zm` in "the formula". git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8070 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56b84fdb1a791cbe02cc4c810a8bac7f49c7704e 2016-04-29 21:32:08 +00009e607955d0c529d4ef6b36f9378b6d08fa21137cPer cam:ticket:59#comment:21, using `T_in_K_zm` in "the formula".editadvance_helper_module.F90advance_helper_module.F907682bbc205b4cd2c20021752e41e29fc76a4a8d01461966004000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59. Also, `rsat` should be `rsat_zm` where it appears in the formula, ''except'' when it appears inside of `ddzt()`. Right? git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8071 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3f69d0d4521af585b55d8462f1eaa98e180189d6 2016-04-29 21:40:04 +00007682bbc205b4cd2c20021752e41e29fc76a4a8d0For cam:ticket:59.editadvance_helper_module.F90stats_zm_module.F90stats_variables.F90advance_xm_wpxp_module.F90f82218e2933997790453ec1d4f6990fdda8415e51462207493000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8072 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fdb08f1446b21bf3ba54158aac38d49e4d5ef7bd 2016-05-02 16:44:53 +0000f82218e2933997790453ec1d4f6990fdda8415e5For cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`.editstats_zm_module.F90editadvance_xm_wpxp_module.F90editstats_variables.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90c74225d16f9673c358f062b6f1e77a2c7cbd06381462231736000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8074 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8fc0610745db2bf6e686f9d315b46fc8395c1cb9 2016-05-02 23:28:56 +0000c74225d16f9673c358f062b6f1e77a2c7cbd0638For cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`.editstats_variables.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90604739065495ff559f032f191e99e9837e6671061462569196000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I added functionality to vertically average Richardson number based on Lscale. The option is turned off by default, so output should be bin-diff identical by default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8083 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6821e86becfff5f3144b4398a27ba261903f486d 2016-05-06 21:13:16 +0000604739065495ff559f032f191e99e9837e667106For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90197f846d43da2f87e5f6f03a1862bd2ceeecc7cf1462570298000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Oops. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8084 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e452ee71e4c3a0ec7bbb1dae710efe4b1209806f 2016-05-06 21:31:38 +0000197f846d43da2f87e5f6f03a1862bd2ceeecc7cfFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_helper_module.F90193b2356409331ff90c897b93d468ed501771a771462843057000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: While reading through the code, I found an important bug in the moist Brunt-Vaisala code. Inside a `where` statement, I had calls to functions that take in an entire profile as input, such as `zt2zm` and `ddzt`. But the arguments to these functions where themselves initialized in the `where` statement! Therefore, much of the input profiles to these functions were likely uninitialized. Not good. This change affects only the case where `l_brunt_vaisala_freq_moist = T`, which is not the default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8085 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8ca078a9223a3a07a90e115f1f1d3296ea196896 2016-05-10 01:17:37 +0000193b2356409331ff90c897b93d468ed501771a77For cam:ticket:59:editadvance_helper_module.F90advance_xm_wpxp_module.F90c7d55c72919e58648dae4e5003586d21008765711463004560000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59. Refactoring: I renamed function `Richardson_num_vert_avg` to `Lscale_width_vert_avg` to make it clear it can be used for other variables. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8086 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f56b3f11144798216e670da4f77fcd1579428676 2016-05-11 22:09:20 +0000c7d55c72919e58648dae4e5003586d2100876571For cam:ticket:59.editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F900522c9f194d6b51ad08844e40e84d5099e7820fc1463018454000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I set `Richardson_num_max` to five, and enabled by default code that vertically averages `C7_Skw_fnc` over a distance of `Lscale_zm`, as this seems to be closer to what we want. This only affects results when `l_use_C7_Richardson = T`, which is not the default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8087 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 087970848c0e815d6b87a84d5d538e720ed6e95b 2016-05-12 02:00:54 +00000522c9f194d6b51ad08844e40e84d5099e7820fcFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F904f0028b1d246bd6d16b5435fc172ecb34a354fc91463018684000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduApparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement. Ref: cam:ticket:59. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8088 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d3a45797366bc238c5b19441707cc0c9f7d99883 2016-05-12 02:04:44 +00004f0028b1d246bd6d16b5435fc172ecb34a354fc9Apparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement.editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F9033af548fec392e63dabb9e2adc048c7c70c9fb861463086723000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am adding exciting support for density-weighted vertical averaging (using function `fill_holes`) in averaging `C7_Skw_fnc`. This affects output if and only if `l_use_C7_Richardson = T`, which is not default. Changes are fairly minor. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8089 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e37640c3132cadc52f0385ba3c8c3c832bccdf28 2016-05-12 20:58:43 +000033af548fec392e63dabb9e2adc048c7c70c9fb86For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90d685dd943a6c479c2997e19bb4e8726eb947042b1463089066000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Refactoring: Virtual levels!!! I am refactoring the code to make use of "virtual levels". This lays the framework to allow below-ground levels to affect the vertical averaging. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8090 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a6bdc7a8634bcac9b9caf5beb7f47313d515a0c6 2016-05-12 21:37:46 +0000d685dd943a6c479c2997e19bb4e8726eb947042bFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90c48216a85ed26f6c6f973e7e9bfad6ae6f6ff1731463093570000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I have set up the `l_use_C7_Richardson = T` code to include "virtual" vertical levels below ground in the vertical averaging of `C7_Skw_fnc`. Output shouldn't change in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8091 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 54d6826625f5e603cd3e348f3fd91c90a578ff83 2016-05-12 22:52:50 +0000c48216a85ed26f6c6f973e7e9bfad6ae6f6ff173For cam:ticket:59:editadvance_xm_wpxp_module.F90parameters_tunable.F90advance_clubb_core_module.F90parameter_indices.F90advance_windm_edsclrm_module.F90clubb_api_module.F900f756d77d387e7bbf34196f019648ffd855834601463518449000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: I merged NCAR's tag, !^/tags/ncar_tags/clubb_cK10_tags/clubb_cK10_n05_r8096, into the trunk. This commit mainly adds a new tuning parameter, `c_K10h`, which is related to `c_K10` but `c_K10h` is for thermodynamic levels. Keeping `c_K10 = c_K10h = 1.0` maintains current results. This commit is BIT_CHANGING, but only because a new tuning parameter was added, and apparently we are in the habit of outputting all tunable parameters in our NetCDF files. Numerically, NetCDF results should be identical. GrADS results are bin-diff identical for all (priority) cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8099 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 06bb00ff2f9e355d4115f2d3b0023e628fec704a 2016-05-17 20:54:09 +00000f756d77d387e7bbf34196f019648ffd85583460For clubb:ticket:782:editadvance_windm_edsclrm_module.F90editparameters_tunable.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editparameter_indices.F90stats_zm_module.F90stats_variables.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90advance_helper_module.F90fabce99c9f3c6239be758f17fa091f1615b44d171463527741000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am bringing in the latest and greatest features from the `diag` branch back into the trunk. The changes are enhancements to the case where `l_use_C7_Richardson = T` (not default). Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8106 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71595a55488b9463768ec15182052bbe4c767470 2016-05-17 23:29:01 +0000fabce99c9f3c6239be758f17fa091f1615b44d17For cam:ticket:59:editstats_zm_module.F90editadvance_xm_wpxp_module.F90editstats_variables.F90editmodel_flags.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90stats_zm_module.F90d47e9225511e6b87d16e1a95e6aaec700ef71fdd1463590697000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I had to increase `nvarmax_zm` due to new statistics being added. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8108 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 50ad45cdc9d10b94c9245b6007e09262696c43c5 2016-05-18 16:58:17 +0000d47e9225511e6b87d16e1a95e6aaec700ef71fddFor cam:ticket:59:editstats_zm_module.F90advance_xm_wpxp_module.F90cc7ff036228d237f5777ed263151c838cd0a3d1b1463604255000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I reintroduced the ability to use `turb_freq_sqd` in the denominator of `Richardson_num` as a option set to false. I suppose this is better than commented out code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8109 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4de028682e1994f0206331aba28c9b3ac14c5ab7 2016-05-18 20:44:15 +0000cc7ff036228d237f5777ed263151c838cd0a3d1bFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F902107752e392902007942d6fdf4b344f1f10bdf8e1463605180000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am introducing a new option (non-default) to vertically average clipped `Richardson_num`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8110 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f5efc2c4006252b3d5f5278dab026c7f2a8ffdd6 2016-05-18 20:59:40 +00002107752e392902007942d6fdf4b344f1f10bdf8eFor cam:ticket:59:editadvance_xm_wpxp_module.F90advance_clubb_core_module.F9097c842511dae89f61397c68fe463edda9a62d84e1463625758000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:782: These changes augment clubb:r8099. I confined the declaration of `RHpostPDF` in a `CLUBB_CAM` preprocessor directive to resolve a compiler warning. I also added `c_K10h` to some error_*.in files for the tuner. This resolves the failure of the nightly FIRE tuner test last night. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8111 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a3e3d9ef33520631972c02276aac7cd4df1459b8 2016-05-19 02:42:38 +000097c842511dae89f61397c68fe463edda9a62d84eFor clubb:ticket:782:editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90491b13f63db3f99e5095c89562ecf4065fc69a181463700393000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am committing parameter changes to the `l_use_C7_Richardson = T` code: * `Richardson_num_max = 200` * Vertical averaging of `Richardson_num` is enabled. * `Richardson_num` below ground is `0.5 * Richardson_num_max`. Output should be bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8112 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c4131f9f29baedbd678035f8d8aadecb08b68358 2016-05-19 23:26:33 +0000491b13f63db3f99e5095c89562ecf4065fc69a18For cam:ticket:59:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F9078b1837f3871084d821505278bbb3f493870d6ed1464124838000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code: 1. The averaging levels should be within 0.5*Lscale, not Lscale. 2. The equation for the number of "below ground" levels was totally wrong. I must have been half asleep when I wrote that equation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8113 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0d38c52c98c6060f95ccb6e35be4b497ff8fff56 2016-05-24 21:20:38 +000078b1837f3871084d821505278bbb3f493870d6edFor cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code:editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90922aa61598b0b75ff0e72446efbc31737cd5b5e71464127537000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI adjusted a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8114 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: da6f1c25f65f4f89af732ac5081fe1ea932915c3 2016-05-24 22:05:37 +0000922aa61598b0b75ff0e72446efbc31737cd5b5e7I adjusted a comment.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90model_flags.F900fceb83bc012d5304422b23d42dd3b5ab083a9191464137943000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I am adding support for "pressure term 3" (pr3) in wp3's equation set. `wp3_pr3` will be included in the equation only if `l_use_wp3_pr3 = T` (default false). The magnitude of `wp3_pr3` is dependent on `C16_fnc`. Currently, `C16_fnc` is hardcoded to be 0.5. In the near future, `wp3_pr3` will instead be based on `Richardson_num`, analogously to `C7_Skw_fnc`. Output is bin-diff identical in the default configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8115 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 216c85147d343dad788bd34689f333e854ffb660 2016-05-25 00:59:03 +00000fceb83bc012d5304422b23d42dd3b5ab083a919For clubb:ticket:788:editmodel_flags.F90editadvance_wp2_wp3_module.F90stats_zm_module.F9065085f8ad1cd4a0a49f60d764d36faa0d47d18691464201509000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: Minor correction to units: the Skw_fnc variables should have units of "-", not "count". Of course, this commit is BIT_CHANGING because units, which are written to the NetCDF files, have been changed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8116 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7d892a1ae271bf6e3c6f8a20ff0ca2046b2b215 2016-05-25 18:38:29 +000065085f8ad1cd4a0a49f60d764d36faa0d47d1869For cam:ticket:59:editstats_zm_module.F90advance_wp2_wp3_module.F90stats_variables.F90stats_zt_module.F90f6f7a5aa8bc79938d9294f1d0d79c93f885daa481464315410000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: After a long battle, I finally got successful statistics outputting of the `wp3_pr3` term!!! Tests run: 1. Output is bin-diff if `l_use_wp3_pr3 = F` (default). 2. Output is bin-diff if `l_use_wp3_pr3 = T` and `C16_fnc(:) = 0.0`. 3. If `C16_fnc(:) = 1.0`, then the `wp3_pr3` term exactly opposes the sum of the `wp3_ta` and `wp3_tp` terms when overplotted. Furthermore, after adding `wp3_pr3` into the `wp3_residual` equation, `wp3_residual` is zero! (That is, the bu dget balances.) That code in `advance_wp2_wp3_module.F90` is pretty intricate, eh? git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8117 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 313f0faf6a0fc63ab241027943c8498096bbe599 2016-05-27 02:16:50 +0000f6f7a5aa8bc79938d9294f1d0d79c93f885daa48For clubb:ticket:788:editadvance_wp2_wp3_module.F90editstats_variables.F90editstats_zt_module.F90advance_xm_wpxp_module.F90advance_helper_module.F9011fdf543bc3a7f58254d8fbe13b5153b70823f431464625455000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Refactoring: I moved `compute_C7_Skw_fnc_Richardson` and `Lscale_width_vert_avg` to `advance_helper_module.F90`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8118 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0811835821202839f23ac52b2703a7ef1fc95472 2016-05-30 16:24:15 +000011fdf543bc3a7f58254d8fbe13b5153b70823f43For clubb:ticket:788:editadvance_xm_wpxp_module.F90editadvance_helper_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F90206f04854099eb063ed1693d2920c0c7645630c01464628703000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Refactoring: I renamed `compute_C7_Skw_fnc_Richardson` to `compute_Cx_fnc_Richardson`. I pulled out the computation of `Cx_fnc_Richardson` to `advance_clubb_core_module` and passed `Cx_fnc_Richardson` to `advance_xm_wpxp`, where it is used to set `C7_Skw_fnc`. Output is bin-diff identical for some test cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8119 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9d6955c8a6dff6139dbc4945304625a4477c0d1 2016-05-30 17:18:23 +0000206f04854099eb063ed1693d2920c0c7645630c0For clubb:ticket:788:editadvance_helper_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F904e1247dd422e18086b059476e7133b703d36ac811464629432000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I am using `Cx_fnc_Richardson` to set `C16_fnc` in subroutine `advance_wp2_wp3`. This should affect output if and only if `l_use_wp3_pr3 = T` (default `F`). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8120 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 918f896b3a551678cf5c156adfd2c04000958a12 2016-05-30 17:30:32 +00004e1247dd422e18086b059476e7133b703d36ac81For clubb:ticket:788:editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_helper_module.F9043a1c71b99857c13815467fcdacd4d0cc18253f71464747298000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: Damage control: I am adding lines that clip `C7_Skw_fnc` (which should now be renamed to `Cx_fnc_Richardson` in this context) to be within the range [0,1]. Apparently, on at least Intel (see build:15667), roundoff error can leave `C7_Skw_fnc` slightly outside this range. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8129 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4675048a0d54c86064366ca667174c5a403d6462 2016-06-01 02:14:58 +000043a1c71b99857c13815467fcdacd4d0cc18253f7For clubb:ticket:788:editadvance_helper_module.F90advance_helper_module.F90a962121436c1d8fe111f625513733b6e28d5c9831465496116000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduRenamed C7 to Cx in appropriate places. Ref: cam:ticket:59 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8130 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9db4228a9996907f46488ec7e6733cdf28e58ab0 2016-06-09 18:15:16 +0000a962121436c1d8fe111f625513733b6e28d5c983Renamed C7 to Cx in appropriate places.editadvance_helper_module.F90advance_helper_module.F9071e67a099e4ecd80abfd3d6e0d25acfa5c6334cb1465587760000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am effectively disabling the use of `shear_sqd` in computing `Richardson_num` in the default code. Output should be affected only in non-default code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8131 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6f10cf99569442c0bfb8b4814d6528669e5f1b00 2016-06-10 19:42:40 +000071e67a099e4ecd80abfd3d6e0d25acfa5c6334cbFor cam:ticket:59:editadvance_helper_module.F90advance_helper_module.F90d49aa6e935a68e226ab41d125afb5e1a8c68d0521465606774000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:59: I am committing various changes to the `Richardson_num` code, such as increasing the averaging width and the `Richardson_num` below-ground value. Output changes only in non-default (i.e., esoteric) configurations of CLUBB. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8132 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0fb298192f03271b416be42967f0283db679eade 2016-06-11 00:59:34 +0000d49aa6e935a68e226ab41d125afb5e1a8c68d052For cam:ticket:59:editadvance_helper_module.F90advance_helper_module.F90b5cf8ffd94155c1b1eb83dc383b8adffc62e150a1465758756000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation. I also changed `Richardson_num_max` to 400. This commit will affect CLUBB output only in non-default configurations. Ref: cam:ticket:61. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8133 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e9cf12eca6b97bf81881796ef7f1ebcde68a4e7 2016-06-12 19:12:36 +0000b5cf8ffd94155c1b1eb83dc383b8adffc62e150aI made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation.editadvance_helper_module.F90mixing_length.F90be1c3106832fe19595c6446e12a254d55b452fc11467930965000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:67: I refactored the computation of rsatl_par_j into a function. Output is bin-diff identical. In the future, this function will do many exciting things. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8180 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6939bd1b43cee733a2028da7bbb654f5427a106f 2016-07-07 22:36:05 +0000be1c3106832fe19595c6446e12a254d55b452fc1For cam:ticket:67:editmixing_length.F90mixing_length.F909241d3160bc3f08cea06a367363bac429b0a48011467933236000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:67: I added the ability to use ice in the computation of rsatl_par. This is wrapped in a flag, `l_include_ice`, which is F by default, keeping output bin-diff. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8182 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f69754e5f7c966f12ce435d22662adcb41959f50 2016-07-07 23:13:56 +00009241d3160bc3f08cea06a367363bac429b0a4801For cam:ticket:67:editmixing_length.F90mixing_length.F90a65a2716e9a84c14d8ce00274c7d8ceb64cec15b1467934375000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduCode improvements. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8183 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 784a92ac88af2f4b23ccd2a75d95f6044beef1d5 2016-07-07 23:32:55 +0000a65a2716e9a84c14d8ce00274c7d8ceb64cec15bCode improvements.editmixing_length.F90mixing_length.F901241c9306c125114c5e2cf74fa5ddf3c0c575ce21467935024000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduVince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more! For cam:ticket:67. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8185 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1a2d64da0eaa23681153f9377c943ba076f6f7d9 2016-07-07 23:43:44 +00001241c9306c125114c5e2cf74fa5ddf3c0c575ce2Vince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more!editmixing_length.F90setup_clubb_pdf_params.F90bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bb1468432966000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8195 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4bfa90e34669bb3e6b15b9b4307a62567624763a 2016-07-13 18:02:46 +0000bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bbFor cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used.editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90aa8a3d9da135f520be59cdf4a39b6835519350ab1468433903000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFixed a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8196 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8551b37c3d21f0eefe0678cb265e12d0d7546021 2016-07-13 18:18:23 +0000aa8a3d9da135f520be59cdf4a39b6835519350abFixed a comment.editsetup_clubb_pdf_params.F90advance_wp2_wp3_module.F904457ce79704986f96788b965685a759a6a14654d1468627919000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788: I made sure `wp3_pr3_rhs` was initialized when `l_use_wp3_pr3 = F`, so that zero is output to stats, rather than an uninitialized variable. This should resolve the failures of the Nightly Uninitialized Variables Test (build:15959) and the Nightly OpenMP Test (build:15953) last night. This commit is BIT_CHANGING because a variable which was output as uninitialized (usually NaN) before is now output as zero. However, answers remain unchanged as long as `l_use_wp3_pr3 = F`. It is worth noting that clubb:r8198 also caused the Nightly Bin Diff Regression Test (build:15948) to fail because it added a stats output and was not marked with a BIT_CHANGING tag. Including the tag in this commit will resolve that failure, and we should see a lovely shade of spring green tomorrow morning. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8199 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 88ee4f1f9682fbaf959972a78008162165f1b04f 2016-07-16 00:11:59 +00004457ce79704986f96788b965685a759a6a14654dFor clubb:ticket:788:editadvance_wp2_wp3_module.F90model_flags.F90942ecdc6d4c071de7a24f6eb24c549ec417eddb41468876031000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I changed some CLUBB parameters: {{{ l_vert_avg_closure = .false. l_trapezoidal_rule_zt = .false. l_trapezoidal_rule_zm = .false. l_call_pdf_closure_twice = .false. l_use_cloud_cover = .false. }}} This commit is BIT_CHANGING: answers will be changed in all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8200 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b469e885afa1be9b6055abc2a7d52ae6fe7d8fe 2016-07-18 21:07:11 +0000942ecdc6d4c071de7a24f6eb24c549ec417eddb4For clubb:ticket:792:editmodel_flags.F90advance_clubb_core_module.F90842f4771aae526e1c2614eecca67aa77b12ac1ce1468888712000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I initialized some variables that were before uninitialized when `l_vert_avg_closure = F`. These uninitialized variables were used only for stats. This commit is BIT_CHANGING in the "_zm" output file because some variables, such as `cloud_frac_zm`, that were output as undefined before are now output as zero. However, the simulation result does not change as a result of this commit. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8201 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 21ad814bfcfd439dd5faf226745d30aad397a9f7 2016-07-19 00:38:32 +0000842f4771aae526e1c2614eecca67aa77b12ac1ceFor clubb:ticket:792:editadvance_clubb_core_module.F90advance_clubb_core_module.F905097bb3b46bc376688d970c63fcfc2b2dbe81ea51468951858000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792, I added more initializations for uninitialized variables. This commit is probably BIT_CHANGING, because output variables that were uninitialized are now output as zero. With this commit, CLUBB runs to completion with the Oracle compiler, resolving build:15997. Hopefully the OpenMP test (build:15991) will follow suit. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8202 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e37f06af1cecae4ccd91298942c3fc3c9bb3780f 2016-07-19 18:10:58 +00005097bb3b46bc376688d970c63fcfc2b2dbe81ea5For clubb:ticket:792, I added more initializations for uninitialized variables.editadvance_clubb_core_module.F90advance_clubb_core_module.F90afa64ca95f3398b1df10f9d3159711a052d12a6b1468957085000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen l_avg_Lscale is turned on but the plume-centered calculation is disabled, I changed the "sample points" chosen to pick the theta-l point associated with the rt point based on the sign of rtpthlp. Since the l_avg_Lscale flag is turned off my default, the results found in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8203 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a98b05fd3e2d332d890fbdf8130ed339f2238b09 2016-07-19 19:38:05 +0000afa64ca95f3398b1df10f9d3159711a052d12a6bWhen l_avg_Lscale is turned on but the plume-centered calculation is disabled,editadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90output_grads.F90eb0be9200bae51409573b16aaab4d408214770031468966137000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792: I removed the `CLUBB_CAM` preprocessor directive surrounding the RH_postPDF fix, and instead added a new flag, `l_rcm_supersat_adj`, set to false by default. This changeset produces bin-diff identical output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8204 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d2869a87f94e19e634e8eaaf6ca296f21994506f 2016-07-19 22:08:57 +0000eb0be9200bae51409573b16aaab4d40821477003For clubb:ticket:792:editadvance_clubb_core_module.F90editmodel_flags.F90editoutput_grads.F90advance_clubb_core_module.F90stats_variables.F90stats_clubb_utilities.F90stats_zt_module.F903137b73c6c8a14a6eec8eee3cf7c53ae38420b2e1468967755000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8205 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c399236ebfe9a2691198f3f87952e0a757833a2e 2016-07-19 22:35:55 +00003137b73c6c8a14a6eec8eee3cf7c53ae38420b2eFor clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output.editadvance_clubb_core_module.F90editstats_variables.F90editstats_zt_module.F90editstats_clubb_utilities.F90advance_clubb_core_module.F90f61e9048127a441fc4fce451ecf7a25f4a3eb9c51468971135000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI renamed RH_postPDF to rel_humidity. For clubb:ticket:792. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8206 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3a4c87b8438e6b3bd9404e5b16a5fb09d05e391 2016-07-19 23:32:15 +0000f61e9048127a441fc4fce451ecf7a25f4a3eb9c5I renamed RH_postPDF to rel_humidity.editadvance_clubb_core_module.F90advance_clubb_core_module.F902b9c0abf5f05672f14e2ffc9c479ec51c03eb1871468977586000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`. This commit doesn't change output by default, because `l_rcm_supersat_adj = F`. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8207 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 424d83775df122fb2114c6dc7a3276a63690a881 2016-07-20 01:19:46 +00002b9c0abf5f05672f14e2ffc9c479ec51c03eb187For clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`.editadvance_clubb_core_module.F90advance_clubb_core_module.F90b5e36c5cc98bee2a71b6e1aac647ef04740481ca1468977936000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8208 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3aef1ca27eb0b5ce179c9910fe52cea575dbb33 2016-07-20 01:25:36 +0000b5e36c5cc98bee2a71b6e1aac647ef04740481caFor clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason.editadvance_clubb_core_module.F90model_flags.F90f0c489f1ec91fede9e93674f5ad8da5adcc72ff21468978272000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist. This commit is BIT_CHANGING. For most cases, results do not change because `l_vert_avg_closure = F`. However, at least twp_ice changes slightly. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8209 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6bc9207fc8f2130454a06cbca7fbcffe4860805 2016-07-20 01:31:12 +0000f0c489f1ec91fede9e93674f5ad8da5adcc72ff2For clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist.editmodel_flags.F90advance_clubb_core_module.F9085557a043ebf71d33df4cb766e602ecc4a5073461468979135000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduAs requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed. For clubb:ticket:792. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8210 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a2c8d6b5c2bfd632c12e47335b95d5fba6e9dc1a 2016-07-20 01:45:35 +000085557a043ebf71d33df4cb766e602ecc4a507346As requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed.editadvance_clubb_core_module.F90advance_clubb_core_module.F905a524a2d05c67e5b0eba255e0804760871ccbca61468979203000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduComment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8211 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d58325cd8606f6c4461777a20d0d1b0c3f13a68d 2016-07-20 01:46:43 +00005a524a2d05c67e5b0eba255e0804760871ccbca6Comment.editadvance_clubb_core_module.F90stats_variables.F90421941ece8fe45eff7e5382bf99596c2c681e5271469028463000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8212 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41002aa1be883eea7f5cee997cf5384d81c4a333 2016-07-20 15:27:43 +0000421941ece8fe45eff7e5382bf99596c2c681e527For clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010).editstats_variables.F90output_grads.F903cd78611e048d03e25589bae4bd6d754156d9a991469031826000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduI removed a spurious print statement. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8216 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d0b98149fb8261c773b77d91b7feada06c134e41 2016-07-20 16:23:46 +00003cd78611e048d03e25589bae4bd6d754156d9a99I removed a spurious print statement.editoutput_grads.F90advance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90model_flags.F90clubb_api_module.F90surface_varnce_module.F90e20752ab491ab93d8c23011bad3f73e6c914a7c91469126912000http://carson.math.uwm.edu/jenkins/user/rautrautraut@uwm.eduFor cam:ticket:73: To facilitate committing tuning changes to CAM, I added a new tuning parameter, `up2_vp2_factor`, and a new flag, `l_use_C11_Richardson`. I made various other changes. Output is bin-diff identical for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8220 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: adaa047dde0e71089e9f336095fa038de4fb2a6d 2016-07-21 18:48:32 +0000e20752ab491ab93d8c23011bad3f73e6c914a7c9For cam:ticket:73:editparameters_tunable.F90editparameter_indices.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmodel_flags.F90editsurface_varnce_module.F90sponge_layer_damping.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90644805cc11020c09f7f7341fac1620b7cdb6200e1470267879000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am beginning to generalize the sponge damping code so that it can be applied to fields such as wp2, up2, and vp2. As part of this change, I am reverting the interpolation of sponge damping time scale, tau_sponge_damp, from linear interpolation to the kind of interpolation that is used in SAM LES. Since the CGILS cases use sponge damping for mean fields toward the top of the domain, the results of this change will be BIT_CHANGING. However, the effect is minor. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8228 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23464bb22b7d8a9ce22bd69c0495c047bb5cc36c 2016-08-03 23:44:39 +0000644805cc11020c09f7f7341fac1620b7cdb6200eI am beginning to generalize the sponge damping code so that it can be applied toeditadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editsponge_layer_damping.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90stats_variables.F90stats_zm_module.F90sponge_layer_damping.F90stats_zt_module.F900c83ceeaa0aa916808a262473b8df43bb02fdfb31470353741000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added all the coding infrastructure to perform sponge damping (and record its effects on the budgets) for wp2, wp3, up2, and vp2. This code is turned off by default. Additionally, I haven't added the stats to stats.in files yet. As a result, the results found in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. Larson Group Internal Trac System Reference: papers:ticket:14. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8229 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: abe95893a6e5716d55769a9090c78f29be20d886 2016-08-04 23:35:41 +00000c83ceeaa0aa916808a262473b8df43bb02fdfb3I have added all the coding infrastructure to perform sponge damping (and recordeditstats_variables.F90editsponge_layer_damping.F90editadvance_xp2_xpyp_module.F90editstats_zm_module.F90editadvance_wp2_wp3_module.F90editstats_zt_module.F90index_mapping.F90bde6e65ded8cec97c1df34c94091e882b55408e41475159422000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added comments about the two sets of indices in CLUBB, the ii indices and the iiPDF indices. These are used to index the hydrometeors and PDF variates, respectively. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8255 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9657730a0639973c1006be330637e3d9fcc56150 2016-09-29 14:30:22 +0000bde6e65ded8cec97c1df34c94091e882b55408e4editindex_mapping.F90stats_variables.F90stats_lh_sfc_module.F90b6c2764136da24f7734273fe582d1021db667c101476799815000http://carson.math.uwm.edu/jenkins/user/roessle9roessle9roessle9@uwm.educlubb:ticket:796 I added the sum and the average of the sample point weights to the lh surface output. The variables are called lh_sample_weights_sum and lh_sample_weights_avg and will be written with the standard_stats output configuration. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8261 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 367b148899348e1a912288af135c165818fab7e9 2016-10-18 14:10:15 +0000b6c2764136da24f7734273fe582d1021db667c10clubb:ticket:796editstats_variables.F90editstats_lh_sfc_module.F90parameters_tunable.F90a3ffb88e1500efe97673ee2d43487617c0a0ff241476822775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some parameter value checking in subroutine setup_parameters. When l_clip_semi_implicit is set to .false. (which it is by default), the new code enforces C6rt = C6thl, C6rtb = C6thlb, C6rtc = C6thlc, and C6rt_Lscale0 = C6thl_Lscale0. This will prevent an inconsistent calculation of wpthlp_pr1 in this scenario, while preventing the user from thinking that the C6thl set of parameters do anything in this scenario. Larson Group Internal Trac System Reference: clubb:ticket:794. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8262 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bf2c9cc9ecbd57d0b8023e100f1d73156d055b65 2016-10-18 20:32:55 +0000a3ffb88e1500efe97673ee2d43487617c0a0ff24I added some parameter value checking in subroutine setup_parameters.editparameters_tunable.F90advance_clubb_core_module.F90c0f71070adf163ea058fe79592c6d476aadc2aa61480576433000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI finally have a standalone version of the new subroutine, generate_pdf_params, that compiles. It is not currently called from any point in the code. Just getting this ready has been an accomplishment. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8281 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8d6c7c4529e72e216b9de62b7dfe2aedf44f438 2016-12-01 07:13:53 +0000c0f71070adf163ea058fe79592c6d476aadc2aa6I finally have a standalone version of the new subroutine, generate_pdf_params,editadvance_clubb_core_module.F90advance_clubb_core_module.F90f5ee4a59559816b441a43d16faeb8b458ea8065a1480577925000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSome code within advance_clubb_core that is found within CAM_CLUBB preprocessor flags requests rcp2_zt and thlprcp as output. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8282 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 198ec6e782719c2321a23acf48820ea841761e1c 2016-12-01 07:38:45 +0000f5ee4a59559816b441a43d16faeb8b458ea8065aSome code within advance_clubb_core that is found within CAM_CLUBB preprocessoreditadvance_clubb_core_module.F90advance_clubb_core_module.F9033092de95e77d84d9857adebcf870b293cb613cd1480581434000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz to be output from generate_pdf_params, and the stats_accumulate code requires that rcm_supersat_adj is output as well. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8283 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1cb9f8be3845cc6a7aa6cf3c372cdf9491c02d19 2016-12-01 08:37:14 +000033092de95e77d84d9857adebcf870b293cb613cdThe perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz toeditadvance_clubb_core_module.F90advance_clubb_core_module.F90617c5f2a850ab442bd934af221554ae218fcccbb1480581973000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a missing intent(out) statement. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8284 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b5482df6be9a1bf3edac10c606dfb183ca5c6cd6 2016-12-01 08:46:13 +0000617c5f2a850ab442bd934af221554ae218fcccbbI added a missing intent(out) statement.editadvance_clubb_core_module.F90advance_clubb_core_module.F907cc27e32c42a7c9441b678648e3aa91f8280d0381480615444000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have interfaced the new subroutine containing all of the PDF closure-related stuff with the code. When the subroutine call is made from the location of the code it is replacing, the results in GrADS output files from the new revision are an exact match to the results in GrADS output files from the previous revision for all cases using CLUBB's default configuration. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8285 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ce07a9d5a621c43d084c67071fa3f694be010651 2016-12-01 18:04:04 +00007cc27e32c42a7c9441b678648e3aa91f8280d038I have interfaced the new subroutine containing all of the PDF closure-relatededitadvance_clubb_core_module.F90advance_clubb_core_module.F901cece97462a9a5d534b5130012ed38d5b9e23d661480616963000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of some variables that were brought into advance_clubb_core by use statements that are no longer necessary. This eliminates new compiler warnings. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8286 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 48e38f266be67c2ef7af997b682505434d7541c3 2016-12-01 18:29:23 +00001cece97462a9a5d534b5130012ed38d5b9e23d66I got rid of some variables that were brought into advance_clubb_core by use statementseditadvance_clubb_core_module.F90advance_clubb_core_module.F9074d4f7f23ddc2d22d680a6c63cd3fedd86ab83f91480617705000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI cleaned up more compiler warnings for unused variables. The warnings came from g95. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8287 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ae7227875369b954d7e996e6ba845fb0cf8e6fdb 2016-12-01 18:41:45 +000074d4f7f23ddc2d22d680a6c63cd3fedd86ab83f9I cleaned up more compiler warnings for unused variables. The warnings came from g95.editadvance_clubb_core_module.F90advance_clubb_core_module.F9065844eccfd6e78d303f9e2b529eabf24f0e95fd61480696738000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a second call to subroutine generate_pdf_params. This one occurs after predictive fields have been advanced. I have also added code to call generate_pdf_params at its original location, at the new location, or at both locations. The appropriate anti-idiot code is currently located in advance_clubb_core, but will be moved in the future. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8288 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: da44da508e6af8609aa44a634f1a8a8ecfef9fd5 2016-12-02 16:38:58 +000065844eccfd6e78d303f9e2b529eabf24f0e95fd6I have added a second call to subroutine generate_pdf_params. This one occurseditadvance_clubb_core_module.F90advance_clubb_core_module.F90652b8ad1bd732665a1c5e813186c434fe84ef4f41480701998000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the setting of qclvar and thlprcp_out to after the second call to subroutine generate_pdf_params. This way, rcp2_zt and thlprcp don't need to be passed in and out of subroutine advance_clubb_core. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8289 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b0697278dc51c875d2131da2dd818c6566983029 2016-12-02 18:06:38 +0000652b8ad1bd732665a1c5e813186c434fe84ef4f4I moved the setting of qclvar and thlprcp_out to after the second call toeditadvance_clubb_core_module.F90advance_clubb_core_module.F90f2b2a33f8d2799df9309411d6a38c945f6e0d69d1480704149000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have declared the l_use_ice_latent option and the l_call_pdf_closure_twice option to be imcompatible with the ipdf_post_advance_fields option. This prevents seldom-used variables, such as rtm_frz, thlm_prz, pdf_params_frz, and pdf_params_zm, from having to be passed in and out of subroutine advance_clubb_core when the PDF is only called after predictive fields have been advanced. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8290 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fd1cf79fe8112f1d96b0e8eb56b700190daef28 2016-12-02 18:42:29 +0000f2b2a33f8d2799df9309411d6a38c945f6e0d69dI have declared the l_use_ice_latent option and the l_call_pdf_closure_twiceeditadvance_clubb_core_module.F90advance_clubb_core_module.F9066ed30caf14d248db6cf1fcdf4f13abb1a2ec0531480705448000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a local cslculation of sigma_sqd_w near the top of subroutine advance_clubb_core in a scenario when the PDF is not called until after the advancement of the predictive fields (in other words, when ipdf_post_advance_fields is selected). Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8291 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b8c687375bd2a3ba9f8f113597ee02e6a66b440b 2016-12-02 19:04:08 +000066ed30caf14d248db6cf1fcdf4f13abb1a2ec053I added a local cslculation of sigma_sqd_w near the top of subroutineeditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F905d635a9256509ec7a5a327a323966cc64f5c58a41480710048000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the inputs and outputs of subroutine advance_clubb_core so that rcm, cloud_frac, wpthvp, wp2thvp, rtpthvp, thlpthvp, sclrpthvp, and pdf_params are all passed through as intent(inout) variables. This change allows for CLUBB's PDF to be called after the predictive fields are advanced when the appropriate option is set. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. The default option is still to call CLUBB's PDF in its historical location, which is prior to the advancement of the predictive fields. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8293 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e49c5e8030cb7838d4a1582f3a6c2aa3ee93f05 2016-12-02 20:20:48 +00005d635a9256509ec7a5a327a323966cc64f5c58a4I am changing the inputs and outputs of subroutine advance_clubb_core so thateditclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90090114c800f5dbd574978c07c4d5558ca86c69ee1480785769000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code so that stats that are internal to subroutine generate_pdf_params are only called once every model timestep when the ipdf_pre_post_advance_fields option, which calls the aforementioned subroutine twice, is called. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8294 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1b25e9166559c4323fc8182969a948e9397c9c39 2016-12-03 17:22:49 +0000090114c800f5dbd574978c07c4d5558ca86c69eeI added code so that stats that are internal to subroutine generate_pdf_paramseditadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90582c3bf747b2fa69443e8f75e18dae7c861ecb4c1481662775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated subroutine advance_clubb_core so that pdf_params_zm is now passed into and out of it as an intent(inout) variables. This enables it to be preserved from timestep to timestep. This also removes the flag l_call_pdf_closure_twice from being blacklisted when ipdf_post_advance_fields is used as the ipdf_call_placement option. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision of this branch for all cases (with the default configuration of ipdf_call_placement = ipdf_pre_advance_fields). Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8314 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7326a7a09d64f47ad1738b2f42b3752f9ccc1bcf 2016-12-13 20:59:35 +0000582c3bf747b2fa69443e8f75e18dae7c861ecb4cI have updated subroutine advance_clubb_core so that pdf_params_zm is now passededitadvance_clubb_core_module.F90editclubb_api_module.F90diagnose_correlations_module.F90index_mapping.F90setup_clubb_pdf_params.F90clubb_api_module.F90array_index.F90corr_varnce_module.F90cdaeea61eda638c5b85824407830ec4b16a5abe51484122852000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8339 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: eebc4d9c6aec2d6a54b9769d4dbac2a14ee20c8f 2017-01-11 08:20:52 +0000cdaeea61eda638c5b85824407830ec4b16a5abe5Ticket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identicaleditdiagnose_correlations_module.F90editsetup_clubb_pdf_params.F90editcorr_varnce_module.F90editindex_mapping.F90editclubb_api_module.F90editarray_index.F90index_mapping.F90diagnose_correlations_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90matrix_operations.F90corr_varnce_module.F902d21676fa45bca8e71ae19a0844aba77789b41271484287146000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.eduTicket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identical git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8341 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 94b0bd96aa64476c342b0fa90bbf9c28df1fb468 2017-01-13 05:59:06 +00002d21676fa45bca8e71ae19a0844aba77789b4127Ticket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identicaleditindex_mapping.F90editsetup_clubb_pdf_params.F90editmatrix_operations.F90editclubb_api_module.F90editcorr_varnce_module.F90editdiagnose_correlations_module.F90advance_clubb_core_module.F90729952dc7d1cce36a1243a7968fc10b1f9d5e4821484944004000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added a blank line, which will not change answers. However, it will test if the AUTO_COMMIT feature is still working after other:r537. For other:ticket:439. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8346 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b9caa5a3e8936342fc662afee698c65f32fe02cb 2017-01-20 20:26:44 +0000729952dc7d1cce36a1243a7968fc10b1f9d5e482editadvance_clubb_core_module.F90advance_clubb_core_module.F90129209e51573452d8eef3328cff95a1aa34db1e91485187160000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu I added a blank line merely to trigger the AUTO_COMMIT updater. It won't change answers. For other:ticket:439. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8347 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 15a16bb6e0e12fb0b4afa9e1f386936a471d7f93 2017-01-23 15:59:20 +0000129209e51573452d8eef3328cff95a1aa34db1e9editadvance_clubb_core_module.F90pdf_parameter_module.F90f613fb4ce5602b4624d4637df30dd3069057a94c1485383631000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new subroutine, init_pdf_params, to pdf_parameter_module.F90. This allows for an easier way of initializing variables of type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8348 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0411cc2ab856908a8153bc51bdcdc93638767e24 2017-01-25 22:33:51 +0000f613fb4ce5602b4624d4637df30dd3069057a94cI added a new subroutine, init_pdf_params, to pdf_parameter_module.F90.editpdf_parameter_module.F90pdf_parameter_module.F90setup_clubb_pdf_params.F90baeba5205aa0fdde1c16c1d735011a9d6eeb96fd1485385275000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90 as subroutine pack_hydromet_pdf_params. I took out the ifdef CLUBB_CAM preprocessor flags around some declarations and subroutines in pdf_parameter_module.F90 because they are also going to be called by WRF-CLUBB (and possibly SAM-CLUBB). The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8349 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7fe6b09e563382cdf65378edd286fa3d6b9c7c9 2017-01-25 23:01:15 +0000baeba5205aa0fdde1c16c1d735011a9d6eeb96fdI renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90editsetup_clubb_pdf_params.F90editpdf_parameter_module.F90variables_diagnostic_module.F90variables_prognostic_module.F9092d57479e3f56b93ba46a1773be93ab46078b8b81485386473000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am now using the new subroutine init_pdf_params to initialize the values of the PDF parameters of type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8350 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 24899b7617ce4e89fd6ba4406625230c9f18dfbb 2017-01-25 23:21:13 +000092d57479e3f56b93ba46a1773be93ab46078b8b8I am now using the new subroutine init_pdf_params to initialize theeditvariables_diagnostic_module.F90editvariables_prognostic_module.F90clubb_api_module.F90149845b7ef749677b049d594d2e87e8fd4e0ce921485387548000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api, unpack_pdf_params_api, and num_pdf_params so that they can be accessed from WRF-CLUBB. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8351 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 749c0e32563c60a53b924f1ff350fbc0e82e03e3 2017-01-25 23:39:08 +0000149845b7ef749677b049d594d2e87e8fd4e0ce92I removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api,editclubb_api_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90matrix_operations.F900e6ad4f7bd68117de009609e955a67219d3966551486693085000http://carson.math.uwm.edu/jenkins/user/savvasavvasavva@uwm.educlubb:ticket:800 -- Changed fatal errors statements to debug level 0. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8355 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 842caa8112d9655db44e72c6906c8b6efd4e60fe 2017-02-10 02:18:05 +00000e6ad4f7bd68117de009609e955a67219d396655clubb:ticket:800 -- Changed fatal errors statements to debug level 0.editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editmatrix_operations.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editmixing_length.F90editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F908907a3787230cb9be6c3fea6254676a199330a131487706416000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvp are passed into subroutine stats_accumulate rather than be brought in by USE statements. This will allow these variables to be output correctly in the CLUBB stats grid column in WRF-CLUBB runs. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8361 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b7dbabdfea13cf54aa5d8f089ccbc780be0ddd1d 2017-02-21 19:46:56 +00008907a3787230cb9be6c3fea6254676a199330a13I updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvpeditadvance_clubb_core_module.F90editstats_clubb_utilities.F90stats_variables.F90stats_clubb_utilities.F90advance_clubb_core_module.F90stats_zm_module.F90cf19b99a6421ab461a8aba9db5cffe0045a2c8c21487877183000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the coding infrastructure to output additional statistics w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm. These are necessary for CLUBB restarts if the ipdf_call_placement flag is set to ipdf_post_advance_fields and the l_call_pdf_closure_twice flag is turned on. Additionally, I have added all the necessary CLUBB fields to input fields and to CLUBB restarts so that restarts should be successful if the ipdf_call_placement flag is set to ipdf_post_advance_fields. I have not added the new stats to the stats.in files yet. With that, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group Internal Trac System Reference: cam:ticket:87. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8362 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4289d2475f8d595b9e6dc2bb91286da307b49241 2017-02-23 19:13:03 +0000cf19b99a6421ab461a8aba9db5cffe0045a2c8c2I have added the coding infrastructure to output additional statisticseditstats_variables.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editstats_zm_module.F90advance_clubb_core_module.F90797509049869e44636489bd02d8d7359dd85ed0d1488057545000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a bug fix for the Sun compiler. The variables pdf_params_zm and pdf_params_frz, which aren't used with CLUBB's current default settings, are intent(out) of subroutine generate_pdf_params. While they are initialized in CLUBB, they were not initialized in subroutine generate_pdf_params, and since they weren't being used by default, NaN values were being passed out of generate_pdf_params, overwriting the 0 values that they had been initialized to. This bug fix initializes pdf_params_zm and pdf_params_frz locally within subroutine generate_pdf_params. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8366 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dff11a1927e522b0c5ff0acb47da029ee6750ed5 2017-02-25 21:19:05 +0000797509049869e44636489bd02d8d7359dd85ed0dThis is a bug fix for the Sun compiler. The variables pdf_params_zm andeditadvance_clubb_core_module.F90setup_clubb_pdf_params.F90da1e6e93f57c3b5937ce93743d13f2c8698fafe81488089851000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the hydrometeor PDF code to set mu_hm_1 and mu_hm_2 based on mu_thl_1 and mu_thl_2. This will help improve the increase of thlp2 from evaporation of rain near ground in cases that use analytic microphysics or SILHS. The results of this change are BIT_CHANGING for all cases that use any type of microphysics. Larson Group Internal Trac System Reference: papers:ticket:14. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8368 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ec62851ec33aa701989b4a4cac6dee344a642277 2017-02-26 06:17:31 +0000da1e6e93f57c3b5937ce93743d13f2c8698fafe8I am updating the hydrometeor PDF code to set mu_hm_1 andeditsetup_clubb_pdf_params.F90advance_clubb_core_module.F902849e9ec8d8be6daa3f5c9db5f17bf33290447f61488347866000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRunning the Bitten tests. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8370 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6aaf5c5e07d2bc8e122b2a68f5d92bed5ae7bc78 2017-03-01 05:57:46 +00002849e9ec8d8be6daa3f5c9db5f17bf33290447f6Running the Bitten tests.editadvance_clubb_core_module.F90advance_clubb_core_module.F90eb63cc3ecb36c7abf5b3dc60006f1285c707ffe11494005902000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some comments so that CLUBB-SILHS would be consistent with the CLUBB-SILHS overview document that I am writing. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8375 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f3f8fc84aa3c36b96796c683052f3f443980e0a7 2017-05-05 17:38:22 +0000eb63cc3ecb36c7abf5b3dc60006f1285c707ffe1I added some comments so that CLUBB-SILHS would be consistent witheditadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_zt_module.F90numerical_check.F90pdf_closure_module.F90pdf_parameter_module.F90stats_clubb_utilities.F90stats_variables.F901bdf138739edb357345723bef5f76f60b0df026c1500069477000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAs a first step, I changed all instances of rrtthl to corr_rt_thl_1. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8405 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 79fdfb7e6a2ee9170090af10d080d8d936a149c1 2017-07-14 21:57:57 +00001bdf138739edb357345723bef5f76f60b0df026cAs a first step, I changed all instances of rrtthl to corr_rt_thl_1.editpdf_parameter_module.F90editstats_zt_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editnumerical_check.F90editpdf_closure_module.F90editstats_variables.F90advance_clubb_core_module.F90stats_zt_module.F90numerical_check.F90pdf_closure_module.F90stats_clubb_utilities.F90pdf_parameter_module.F90stats_variables.F902f64d7d1fad1935e490184a2f226e249b4dadeee1500071690000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2. Since an additional stat has been added to output, this particular change is BIT_CHANGING. However, this is only for GrADS _zt output files. Results in GrADS _zm and _sfc output files remain the same. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8406 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b4b6c041f955df44b7e95fbcc72b4bfbfabf91a1 2017-07-14 22:34:50 +00002f64d7d1fad1935e490184a2f226e249b4dadeeeI have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2.editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editstats_zt_module.F90editpdf_parameter_module.F90editnumerical_check.F90editstats_variables.F90editpdf_closure_module.F90pdf_closure_module.F90pdf_parameter_module.F90advance_clubb_core_module.F90numerical_check.F909e72781b4211e81e73b40cafe2fc4f0f0ad3a30d1500529380000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2 to the pdf_parameter derived data type. The value of these variables is simply set to 0 for the ADG1 PDF. They have not yet been output to stats. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8407 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6a265cc291b093421e23178aaf0a2793a513fdbc 2017-07-20 05:43:00 +00009e72781b4211e81e73b40cafe2fc4f0f0ad3a30dI have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2editpdf_closure_module.F90editnumerical_check.F90editpdf_parameter_module.F90editadvance_clubb_core_module.F90stats_variables.F90stats_clubb_utilities.F90stats_zt_module.F905c7d2be0e9f62502f81ce75fe3741456dae750ed1500601225000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2. The results in GrADS _zt output files change, owing to additional statistics. This commit is BIT_CHANGING. Otherwise, all the other GrADS output files stay exactly the same. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8408 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71c2743e87f125b0e60ccae83fc1fff07e69cb6f 2017-07-21 01:40:25 +00005c7d2be0e9f62502f81ce75fe3741456dae750edI added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2,editstats_zt_module.F90editstats_variables.F90editstats_clubb_utilities.F90pdf_closure_module.F90d854c55ef50cfb617782f166fb066c43ceb8ada71501016894000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to include within-component correlations of w and rt or w and theta-l. I am also replacing the hardwired settng of corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2 to 0 (for ADG1) with the equations that solve for these correlations. For the ADG1, the result of the equation is within-component correlations that have a value of 0 --- well, within numerical roundoff error of 0 (such as 1.0e-14). Since this code change technically changes results, this commit is BIT_CHANGING. However, plotgen shows profiles exactly overlap for almost all cases. The ultra-sensitive ARM 97 case is the most notable exception. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8409 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e5487001c112145b1f562684e41498d04ef27f89 2017-07-25 21:08:14 +0000d854c55ef50cfb617782f166fb066c43ceb8ada7I am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to includeeditpdf_closure_module.F90pdf_utilities.F9065c599a0a6b342524a4e151d6a5fe6b29f792af21501124070000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a special function to calculate the within-component correlation of eta and variable x (such as w), which depends, in part, on the within-component correlaton of rt and x and the within-component correlation of theta-l and x. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8410 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fb019f47f4446c226d298f7219d77628c879392 2017-07-27 02:54:30 +000065c599a0a6b342524a4e151d6a5fe6b29f792af2I am adding a special function to calculate the within-component correlation ofeditpdf_utilities.F90pdf_closure_module.F90ec0c789074314e3ce17bafe76ff0f03d46431f7c1501134625000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to subroutine pdf_closure. They calculate the within-component correlations by calling utility functions in PDF utilities. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8411 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9ca795e3b8d60784a00b76016f8b209c9a93203 2017-07-27 05:50:25 +0000ec0c789074314e3ce17bafe76ff0f03d46431f7cI added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2editpdf_closure_module.F90pdf_parameter_module.F90pdf_closure_module.F90numerical_check.F90c5840a13dc0ebcb6ee34e88c8c56ba714373b3121501709183000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to type pdf_parameter. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8412 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a43fc0230324a470f3d7ab7c3f1345b54994ad84 2017-08-02 21:26:23 +0000c5840a13dc0ebcb6ee34e88c8c56ba714373b312I am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to typeeditnumerical_check.F90editpdf_parameter_module.F90editpdf_closure_module.F90stats_variables.F90setup_clubb_pdf_params.F90stats_zt_module.F90a1089add9c25d5324dde3dbd23e95e3b33821b081501714052000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow that the PDF component correlations of w and chi, as well as w and eta, will be allowed to be something other than 0 when a new PDF is used, stats needs to account for that. Already in the code, corr_chi_eta_1 is the value calculated in PDF closure, while corr_chi_eta_1_ca is the actual value used in the correlation array. This depends on whether the calculated value or a prescribed value is used in the array. This code is now being mimicked for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2. The first step is change the current stats output corr_w_chi_1 to corr_w_chi_1_ca, etc. The results in GrADS *.dat output files from this revision are an exact match to the results in GrADS *.dat output files from the previous revision for all cases. The GrADS *.ctl files differ because the stat names have changed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8413 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8a0b4efb9a160adb315c099462bcc07dc5b9359e 2017-08-02 22:47:32 +0000a1089add9c25d5324dde3dbd23e95e3b33821b08Now that the PDF component correlations of w and chi, as well as w and eta,editstats_zt_module.F90editstats_variables.F90editsetup_clubb_pdf_params.F90stats_clubb_utilities.F90stats_variables.F90stats_zt_module.F90ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f61501716478000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2. The results in GrADS output files differ because of the additional statistics, so this revision is BIT_CHANGING. However, this is only for the *_zt output files. The results in GrADS *_zm and *_sfc output files from this revision are and exact match to the results in GrADS *_zm and *_sfc files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8414 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 309a5fed35104c5422cc4ad24efc8c0c241ad858 2017-08-02 23:27:58 +0000ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f6I am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1,editstats_clubb_utilities.F90editstats_variables.F90editstats_zt_module.F90model_flags.F90setup_clubb_pdf_params.F90clubb_api_module.F90corr_varnce_module.F908ca31ccec167f25a7f32ddbf3ca7b54d3a8230321501719775000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the name of the flag l_fix_chi_eta_correlations to l_fix_w_chi_eta_correlations. This is because code will need to be introduced to fix the PDF component correlations of w and chi and w and eta for SILHS. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8415 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 32b0f55832325418462852f9fc611c2ed25a7b2c 2017-08-03 00:22:55 +00008ca31ccec167f25a7f32ddbf3ca7b54d3a823032I am changing the name of the flag l_fix_chi_eta_correlations toeditclubb_api_module.F90editcorr_varnce_module.F90editmodel_flags.F90editsetup_clubb_pdf_params.F90pdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F905779b395cf8ca60cdd2b751d238da3b2c45421291501828308000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe two component normal (double Gaussian) PDF used by CLUBB will now be selected by an integer index, rather than multiple logical flags. The PDF type used by CLUBB is called iiPDF_type. The value of iiPDF_type can be set to one of the following: iiPDF_ADG1 = 1: ADG1 PDF (default) iiPDF_ADG2 = 2: ADG2 PDF (can only be used with input fields) iiPDF_3D_Luhar = 3: 3D Luhar PDF (can only be used with input fields). Additional PDF types will be added in the near future. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:770. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8416 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b7157d59487b308c22704bc6f37dc39fb1acb0b 2017-08-04 06:31:48 +00005779b395cf8ca60cdd2b751d238da3b2c4542129The two component normal (double Gaussian) PDF used by CLUBB will now beeditclubb_api_module.F90editmodel_flags.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F908edb8709cbdb95f0e8ae17bf23a57d9863c9d77d1501887618000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the checking of the options for the PDF call placement to subroutine setup_clubb_core, which is the same place where the options for the PDF type are checked. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8418 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7d2573b3d770b6f6f0b3a899a49f2ea17978e381 2017-08-04 23:00:18 +00008edb8709cbdb95f0e8ae17bf23a57d9863c9d77dI moved the checking of the options for the PDF call placement to subroutineeditadvance_clubb_core_module.F90setup_clubb_pdf_params.F9026a1ae6570d7ca0c695eab9bd90bd6e66bb6f3131502394562000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering setup PDF parameters to be able to read in the values of corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 calculated by CLUBB's PDF closure when l_fix_w_chi_eta_correlations is turned off. Since RICO and RICO SILHS have l_fix_w_chi_eta_correlations turned off by default, and since the values of corr_w_chi_1 are within numerical roundoff of 0, but are not exactly 0 (since they aren't hardwired to 0 anymore in this situation), the GrADS output results for the RICO cases are technically BIT_CHANGING. However, for all other cases, the results in GrADS output files from this revison are an exact match to the results in GrADS output files from the previous revison. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8420 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f78b2d5236cd3ee28677ab616d9a3189fb3e1cde 2017-08-10 19:49:22 +000026a1ae6570d7ca0c695eab9bd90bd6e66bb6f313I am altering setup PDF parameters to be able to read in the values ofeditsetup_clubb_pdf_params.F90new_pdf.F90c07ab5ccd5a6e475db0719d161e28b3928b9331c1502937779000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the new file new_pdf.F90 to the CLUBB core directory. So far, it basically contains a few comments. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8424 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 907fafe42349a2f36c433b92f7e96fd9206a182f 2017-08-17 02:42:59 +0000c07ab5ccd5a6e475db0719d161e28b3928b9331cI am adding the new file new_pdf.F90 to the CLUBB core directory. So far, itaddnew_pdf.F90new_pdf.F90ce75f5ce98726c064acad7ff3b291699db00bf2e1503201511000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a large amount of code to the new PDF. I have filled in the driver subroutine, and I have added functions and subroutines for mixture fraction, the PDF component means and standard deviations for the "setter" variable, and the PDF component means and standard deviations for the "responder" variables. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8427 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 014bdf1009c7ade517a2a13b457a8d0dfcbc915e 2017-08-20 03:58:31 +0000ce75f5ce98726c064acad7ff3b291699db00bf2eI am adding a large amount of code to the new PDF. I have filled in the drivereditnew_pdf.F90new_pdf.F9085308f4beb5f735c34d9d8e875a722134919d6a71504037851000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding code to the new PDF that calculates the minimum and maximum allowable values of F_x for a responding variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8431 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e00f9da2367b8a8c40031b8d2f9817458ef1533 2017-08-29 20:17:31 +000085308f4beb5f735c34d9d8e875a722134919d6a7I am adding code to the new PDF that calculates the minimum and maximumeditnew_pdf.F90pdf_closure_module.F9011d7a9d84753ae52c284a70bf29849bc744ed9c41504043430000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new iiPDF entry for the new PDF, and I neatened some of the current code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8432 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8f478d6814c6a69b3677af8309f4a145fe85090e 2017-08-29 21:50:30 +000011d7a9d84753ae52c284a70bf29849bc744ed9c4I added a new iiPDF entry for the new PDF, and I neatened some of the currenteditpdf_closure_module.F90pdf_closure_module.F907ae91ab288665049bbef456846c14561ab3ac1081504044268000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added an option to call the new PDF from subroutine pdf_closure. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8433 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 208d82318173789a7c7d6e09277832b2d5fb39f4 2017-08-29 22:04:28 +00007ae91ab288665049bbef456846c14561ab3ac108I added an option to call the new PDF from subroutine pdf_closure.editpdf_closure_module.F90advance_clubb_core_module.F90df45d687af4c60ee9f4d8dc3ed58df880c4e90f11504045491000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI had to add checking for the new PDF so someone does not try to run it interactively until it is ready for that. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8435 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ee48cae5f28e2184bf87cd80351fc1987fddb28d 2017-08-29 22:24:51 +0000df45d687af4c60ee9f4d8dc3ed58df880c4e90f1I had to add checking for the new PDF so someone does not try to run iteditadvance_clubb_core_module.F90advance_clubb_core_module.F90pdf_closure_module.F90250072e68b4e2047771089a721f91f5648f686ee1504104485000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a couple changes to (1) initialize two variables that aren't used by the new PDF (alpha_rt and alpha_thl) to default values in order to avoid them being set to NaN and causing a runtime error, and (2) calculate skewness from thlp3 and thlp2 (or rtp3 and rtp2) for the new PDF. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8437 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7fb0580861183c3d696238bd7168d1cfbc97bcd3 2017-08-30 14:48:05 +0000250072e68b4e2047771089a721f91f5648f686eeI made a couple changes to (1) initialize two variables that aren't used by theeditpdf_closure_module.F90editadvance_clubb_core_module.F90new_pdf.F90122a9c185ebc5211667fef6f3500c821a50366141504114265000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a conditional to the subroutine that sets the responder parameters. When both Skx and F_x are exactly 0 (and the only Skx that can be represented when F_x is 0 is a Skx of 0), a couple of equations end up with an undefined 0/0. In this scenario, the PDF is converging to a single Gaussian. When both Skx and F_x have a value of 0, the PDF of responder variable x is now defined to be a single Gaussian (which is the shape it was converging to). CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8439 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 816a6b607a2d470e1e21faaba2cae46905211943 2017-08-30 17:31:05 +0000122a9c185ebc5211667fef6f3500c821a5036614I added a conditional to the subroutine that sets the responder parameters.editnew_pdf.F90new_pdf.F907760911823e32928409cbe64bf70121141891a341504332693000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the beginnings of a new unit test for the PDF parameters. Currently, it tests the new PDF, but only the "setter" variable. It checks based on a variety of input values and loops over many different tunable parameter values. Once mu_w_1, mu_w_2, sigma_w_1, sigma_w_2, and mixt_frac have been calculated, the values of wm, wp2, wp3, and Skw are recalculated using PDF parameters and compared to their original values. Additionally, the test also checks that sigma_w_1 >= 0, sigma_w_2 >= 0, and 0 < mixt_frac < 1. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8441 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 116cd507bfb549e1fd9678dc1207a98de3d8bb52 2017-09-02 06:11:33 +00007760911823e32928409cbe64bf70121141891a34I have added the beginnings of a new unit test for the PDF parameters.editnew_pdf.F90new_pdf.F9082a034dfa874b3e850244853312a754392e823bd1504736013000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated the PDF parameter unit test to make a call to the full PDF (for the new PDF). CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8442 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b3c8936e8d546569a1877900dc53dcc7cffdb9a4 2017-09-06 22:13:33 +000082a034dfa874b3e850244853312a754392e823bdI have updated the PDF parameter unit test to make a call to the full PDF (foreditnew_pdf.F90pdf_closure_module.F908e609886fe423733d4568c845d91d3847cc808741504766042000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a feature to the PDF parameter unit tests which allows the user to declare which PDF is being tested. With this, I have added some code to test the "setter" variable for ADG1 (which is always w). The test loops over incremental values of sigma_sqd_w for each of the PDF input parameter sets, calculates the PDF component means, component variances, and mixture fraction, and then recalculates wm, wp2, wp3, and Skw. I still have to add code to test the full PDF for ADG1. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8443 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 645ed2b73204952f8d3cc9193f516576d13ef6ae 2017-09-07 06:34:02 +00008e609886fe423733d4568c845d91d3847cc80874I have added a feature to the PDF parameter unit tests which allows the usereditpdf_closure_module.F90new_pdf.F90df8d5977e025ede94c6b058b97856c0bed8cb3261504842829000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn the setter variable description and subprograms, I made a name change from mu_w_1, etc., to mu_x_1, etc. This was done because other variables besides w might be used as the setter variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8444 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 04ecfc94c1d512f4815f332ea0d6271b413b7394 2017-09-08 03:53:49 +0000df8d5977e025ede94c6b058b97856c0bed8cb326In the setter variable description and subprograms, I made a name change fromeditnew_pdf.F90new_pdf.F90f191465a17f26341952b058689a1d428c0a4bfdd1504846771000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have updated the method of calculating the setter variable so that mu_x_1 and mu_x_2 are set based on the sign of <w'x'>. This is described in the back pages of the derivation of the method for the setting variable. In a nutshell, sqrt(F_x) is replaced by sqrt(F_x) * sgn( <w'x'> ) in the entire equation set. Most equations use F_x (or an integer power of F_x). Even after the replacement, F_x remains F_x (because the square, etc., of sgn( <w'x'> ) is always 1). The only equations that are altered are the equations for mu_x_1 and mu_x_2. When the sign of <w'x'> is positive, mu_x_1 >= mu_x_2. Otherwise, when the sign of <w'x'> is negative, mu_x_1 <= mu_x_2. When variable x is w, the sign of wp2 is always postive, and mu_w_1 >= mu_w_2, following previous conventions. This change allows for things such as mu_thl_1 <= mu_thl_2 when <w'thl'> < 0 in the event that theta-l is the setting variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8445 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 733f5f36dad88f0ecaef746b8e01c4ffbff39ef5 2017-09-08 04:59:31 +0000f191465a17f26341952b058689a1d428c0a4bfddI have updated the method of calculating the setter variable so that mu_x_1editnew_pdf.F90new_pdf.F902dcf994553dc649bcd496308117a8b6a97113d4b1504933930000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added primarily some more documentation and notes. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8446 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7b3f11bef3737730d2d558cff2e12e27c75b139 2017-09-09 05:12:10 +00002dcf994553dc649bcd496308117a8b6a97113d4bI added primarily some more documentation and notes.editnew_pdf.F90new_pdf.F90e81daa5f055f4c99b63bd444bce743bd8f92c8971505141754000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some more comments documenting the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8447 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 08c4a3ab5eebcd45cefffb401c35386c88a872b6 2017-09-11 14:55:54 +0000e81daa5f055f4c99b63bd444bce743bd8f92c897I added some more comments documenting the code.editnew_pdf.F90new_pdf.F90pdf_closure_module.F90constants_clubb.F9046632b4b96b05fb8079924794420043194c5ee011505152039000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of some of the expressions that a script might try to flag as "magic numbers" by doing something that I started a while ago --- declaring those numbers as constant parameters in the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8448 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e99a65715204e9382dfb6357ac1a76ebf4517581 2017-09-11 17:47:19 +000046632b4b96b05fb8079924794420043194c5ee01I got rid of some of the expressions that a script might try to flag aseditpdf_closure_module.F90editconstants_clubb.F90editnew_pdf.F90new_pdf.F90b7a9edf6cdf37b4d301a5426e8f7f787fac26ccc1505255733000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added much more documentation about the responder variable. Specifically, much of the new documentation is about how the limits of F_x are calculated. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8449 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a8d6f95d883a38bf345324b717d3f1955d5688d5 2017-09-12 22:35:33 +0000b7a9edf6cdf37b4d301a5426e8f7f787fac26cccI added much more documentation about the responder variable. Specifically,editnew_pdf.F90original_pdf.F9096dd4a8d1759e5ed899571e92df95527e3995d871505371440000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2, and 3D Luhar PDF closures. As of right now, the original code still remains in PDF closure, and this code is not currently interface with any part of CLUBB. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8450 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4d83bf47bf1260f79b1584952743991e1d4af68a 2017-09-14 06:44:00 +000096dd4a8d1759e5ed899571e92df95527e3995d87I am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2,addoriginal_pdf.F90original_pdf.F90pdf_closure_module.F90e45432703a561cdc6e81c106568c3cab71b56bba1505406315000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have now switched the PDF closure code over to calling the code that had been moved to original_pdf.F90 in r8450. The code that remained in PDF closure has now been deleted. I have also moved the code to calculate the PDF parameters for passive scalars to inside the driver subroutines for ADG1 and ADG2. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8451 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5b68933fc999bc8258625b0d9a3fd8c1b3128d46 2017-09-14 16:25:15 +0000e45432703a561cdc6e81c106568c3cab71b56bbaI have now switched the PDF closure code over to calling the code that had beeneditoriginal_pdf.F90editpdf_closure_module.F90new_pdf.F901a2c52b7d840dea49e23776c4d9591929663b5bc1505617261000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the documentation in the code comments for the setter method and generalized the mixture fraction code so that any variable, x, can be used as the setter variable, not just w. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8453 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 319e3ff46c48a3a9efea5d7e7b977ddeb203ee4b 2017-09-17 03:01:01 +00001a2c52b7d840dea49e23776c4d9591929663b5bcI updated the documentation in the code comments for the setter method andeditnew_pdf.F90new_pdf.F901b93dd6436c3a08431325786bfc77e3a0ed10c5f1505617722000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a comment. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8454 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 476d92833ba72680bb61cee9e1a5846e2df19a53 2017-09-17 03:08:42 +00001b93dd6436c3a08431325786bfc77e3a0ed10c5fI added a comment.editnew_pdf.F90pdf_utilities.F90new_pdf.F90pdf_closure_module.F909638daee00cbed38db5adb3d64ec7cdba43206c51505856406000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. This function calculates the PDF component correlations of two variables that are both distributed as part of a two component normal distribution. The code is a copy of code that was previously found in subroutine pdf_closure. Now, pdf_closure calls this function multiple times over, rather than repeating the same code multiple times in a row. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8455 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ee93f6bfb3c984fdec7a851189dfc4c502aae5c0 2017-09-19 21:26:46 +00009638daee00cbed38db5adb3d64ec7cdba43206c5I added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. Thiseditpdf_utilities.F90editnew_pdf.F90editpdf_closure_module.F90new_pdf.F90512906b3f915322181776bee28aa6abd4bb7703a1505887818000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some more descriptive comments and a new function that calculates the coefficient of the wp4 equation (for implicit time stepping), where: wp4 = coef_wp4_implicit * wp2^2^ CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8456 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4336f01d26892857c38991297e10d652737d4754 2017-09-20 06:10:18 +0000512906b3f915322181776bee28aa6abd4bb7703aI added some more descriptive comments and a new function that calculates theeditnew_pdf.F90new_pdf.F90376bd21e269d7d0c874d2dc5fb12d05f99d8794f1505965326000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passed out of the subroutine that calculates the PDF parameters for the setter variable. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8457 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dd22397b49b2096afb51cdefa80f672f93bc5c50 2017-09-21 03:42:06 +0000376bd21e269d7d0c874d2dc5fb12d05f99d8794fI updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passededitnew_pdf.F90new_pdf.F90ec87600ee30f3e74fb2037e0166318973b4b54161505965630000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a mistake. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8458 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56c95f8615f28064b8a74c51c26d791616eb2cb4 2017-09-21 03:47:10 +0000ec87600ee30f3e74fb2037e0166318973b4b5416I fixed a mistake.editnew_pdf.F90new_pdf.F90060c2e9f5a165d0db494d1fa22ead556ef6a717d1506056092000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code to call the new function that calculates wp4 implicitly from the unit testing code. I also added some more comments. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8459 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 98fe8bf67b016720bdc77236c765ea80c681ea57 2017-09-22 04:54:52 +0000060c2e9f5a165d0db494d1fa22ead556ef6a717dI have added code to call the new function that calculates wp4 implicitly fromeditnew_pdf.F90pdf_closure_module.F90a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd51506058934000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2 and wpthlp2) into their own functions. At most timesteps, results are exactly the same. On occassion, very, very small discrepancies between the previous version and the new revision show up. The calculations occur with everything in the exact same order as they were performed in previously. They only thing different is passing code out of functions and back to the main program. This odd behavior makes this code technically BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8460 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 79030bc1913e95ecb36bd613713658d726944188 2017-09-22 05:42:14 +0000a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd5I moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2editpdf_closure_module.F90new_pdf.F905384d9d0de5cbfa54786e0022ac45d03923528bb1506234447000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added another function to the new PDF. This function helps to calculate wpxp2 implicitly as part of the xp2 predictive equation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8462 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 33547d862fbf9fecded1db6f1b8f0d4c27db176d 2017-09-24 06:27:27 +00005384d9d0de5cbfa54786e0022ac45d03923528bbI added another function to the new PDF. This function helps to calculateeditnew_pdf.F90new_pdf.F90a104dde34400e73f7996e9b0528415d6529defc61506460821000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a special case for the wpxp2 implicit code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8463 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5d60384202b85e0e30d3b33c1ec996550e5e485f 2017-09-26 21:20:21 +0000a104dde34400e73f7996e9b0528415d6529defc6I added a special case for the wpxp2 implicit code.editnew_pdf.F90pdf_closure_module.F90b20f067da35fa0881ebe6ca019282953548d637d1506464947000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBack in clubb:r8409, the PDF component correlations of w and rt and w and theta-l were calculated rather than assumed to be 0. For ADG1 and ADG2, the resulting values of the correlations were within numerical roundoff error of 0 (for example, 1.0e-14). However, in the interest of trying to keep results in-line as much as possible with historical results, this commitment introduces code to simply set these PDF component correlations to 0 (and avoid the calculation) when the chosen PDF is ADG1 or ADG2. Otherwise, when other PDFs are used, the correlations will be calculated. This commitment is BIT_CHANGING. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8464 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 03e97996f9e5aace3643cf8da3a7019b8f864ed1 2017-09-26 22:29:07 +0000b20f067da35fa0881ebe6ca019282953548d637dBack in clubb:r8409, the PDF component correlations of w and rt and w andeditpdf_closure_module.F90new_pdf.F90315aa47cfb4f0803b723148723f70a5771b634441506568243000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a subroutine that calculates the implicit and explicit portions of the wp2xp equation, where: wp2xp = coef_wp2xp_implicit * wpxp + coef_wp2xp_explicit. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8465 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e6e7a3c61a7ea3f44564e4ab82f73facba6c7115 2017-09-28 03:10:43 +0000315aa47cfb4f0803b723148723f70a5771b63444I added a subroutine that calculates the implicit and explicit portions of theeditnew_pdf.F90original_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90682b8167989760c5e3bdb5fe3112632a480988011506568869000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8466 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ea939d307f723c18aba6dff8ef2a0c739263e2a0 2017-09-28 03:21:09 +0000682b8167989760c5e3bdb5fe3112632a48098801I renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90.deleteoriginal_pdf.F90addadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90pdf_closure_module.F90advance_clubb_core_module.F90stats_variables.F90new_pdf.F90stats_zt_module.F9016b439a231f958d7434c9945fda5b0a33f5659561506643797000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt, max_F_rt, min_F_thl, and max_F_thl. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases for all output files besides the *_zt.dat output files. Owing to the new stats, the *_zt.dat output files make this revision BIT_CHANGING. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8467 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2243298ace53299c9e0222adf2cd233026fe6268 2017-09-29 00:09:57 +000016b439a231f958d7434c9945fda5b0a33f565956I added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt,editadvance_clubb_core_module.F90editpdf_closure_module.F90editnew_pdf.F90editstats_variables.F90editstats_zt_module.F90new_pdf.F90pdf_closure_module.F90new_pdf_main.F9014cd9184faf1cd20250b7dafa64a794f0097225b1506664323000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI split the new PDF into two files. I added a new file that currently houses the driver. The core functions and subroutines of the new PDF remain in the original file. The Happy Birthday to me CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8469 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 68224186fc824f10965e7f887d79f6a3b6d414d4 2017-09-29 05:52:03 +000014cd9184faf1cd20250b7dafa64a794f0097225bI split the new PDF into two files. I added a new file that currently houseseditpdf_closure_module.F90editnew_pdf.F90addnew_pdf_main.F90saturation.F907fa72c493db849383093c4b14b73e1e5567b47c61507128630000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI clipped temperature within the Goff-Gratch functions for saturation over liquid and ice. The goal was to avoid the creation of NaNs that caused CAM to crash over the Himalayas. The result of applying a minimal threshold on temperature is to set saturation to the same small value in all cold areas. To test the code change, I ran the priority cases and determined that the new code produces bin-diff identical results for these cases. That just means that these cases are not cold. However, the code change might increase saturation in cold areas in CAM, thereby diminishing condensation in the upper atmosphere. It would be prudent to check a WACCM simulation for degradation. If there is degradation, the minimum temperatures could be set to smaller values. For cam:ticket:98. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8470 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6c2c6fc13a7673bcdf5da93bde0a350086383b4e 2017-10-04 14:50:30 +00007fa72c493db849383093c4b14b73e1e5567b47c6I clipped temperature within the Goff-Gratch functions for saturation over liquid and ice.editsaturation.F90pdf_closure_module.F902056a9a395e6d8d41d25f58d5e65da97dc4f46bf1507164340000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI initialized some output variables in order to prevent a runtime error. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8472 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3047483573f92b8e310d3f1529a9870a3bdf8446 2017-10-05 00:45:40 +00002056a9a395e6d8d41d25f58d5e65da97dc4f46bfI initialized some output variables in order to prevent a runtime error.editpdf_closure_module.F90new_pdf_main.F90d6bbb281bffd128da2be6a16fa6275df12f972f31507177058000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a sub-driver level subroutine for the calculations necessary for a responder variable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8473 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b930c433b4f7c0162637737a57bd4b5dd51c663 2017-10-05 04:17:38 +0000d6bbb281bffd128da2be6a16fa6275df12f972f3I made a sub-driver level subroutine for the calculations necessary for aeditnew_pdf_main.F90new_pdf.F90new_pdf_main.F9009094b52ced98602026e3ba4b157d17c07c46b6e1507338548000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to allow the variable (of w, rt, or theta-l) with the greatest magnitude of skewness be the setter variable (the variable that sets the mixture fraction). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8476 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5c0be9f8b54edea4f614fe27d7bdcbabf21071d9 2017-10-07 01:09:08 +000009094b52ced98602026e3ba4b157d17c07c46b6eI added code to allow the variable (of w, rt, or theta-l) with the greatesteditnew_pdf_main.F90editnew_pdf.F90new_pdf_main.F90b8df0b0f7f07bbafe999455169a9e03c928f7b741507356781000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added calls to the functions and subroutines that calculate the implicit and explicit components of equations for wp4, wpxp2, and wp2xp. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8477 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bd5eb61264aed108784e8a104833036e2737d08d 2017-10-07 06:13:01 +0000b8df0b0f7f07bbafe999455169a9e03c928f7b74I added calls to the functions and subroutines that calculate the implicit andeditnew_pdf_main.F90new_pdf.F90new_pdf_main.F90796393862523d0e2dc6dcd049937db3fc8702b861508011950000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit) to term_wp2xp_explicit (term_wp2rtp_explicit and term_wp2thlp_explicit) because "term" is a more accurate description here than "coef". git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8480 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3518be4233b5b02e269e2f3d65518d5006cc64ee 2017-10-14 20:12:30 +0000796393862523d0e2dc6dcd049937db3fc8702b86I changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit)editnew_pdf_main.F90editnew_pdf.F90new_tsdadg_pdf.F90pdf_closure_module.F9058cd28c513082639da7ed8a8c98ea851cfd53ce91508023017000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new file for the new trivariate skewness-dependent analaytic double Gaussian (TSDADG) PDF. I have added an interface in the unit tests, although the standard tests aren't conducted yet. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8481 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f6b6b4d8826565e3a7efe3f7b0ad3004d67fd74b 2017-10-14 23:16:57 +000058cd28c513082639da7ed8a8c98ea851cfd53ce9I am adding a new file for the new trivariate skewness-dependent analayticaddnew_tsdadg_pdf.F90editpdf_closure_module.F90new_tsdadg_pdf.F90628c9ccf8a8ec694e55e2a305f72feadc5fc31341508296514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the new Trivariate skewness-dependent analytic double Gaussian PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8482 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 2bbab551f1c16a8aacee8191faf4e6fe9f078a03 2017-10-18 03:15:14 +0000628c9ccf8a8ec694e55e2a305f72feadc5fc3134I fixed a bug in the new Trivariate skewness-dependent analytic double Gaussianeditnew_tsdadg_pdf.F90new_tsdadg_pdf.F90514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f11508302674000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order for the TSDADG PDF to work correctly, when Skx * sgn( <w'x'> ) >= 0, l_x_1 > 2/3 and 0 < l_x_2 < 1. However, when Skx * sgn( <w'x'> ) < 0, the limits need to be reversed. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8483 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 430ba9fb82f4868373f7d7b04e9f578d7d2a7aaa 2017-10-18 04:57:54 +0000514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f1In order for the TSDADG PDF to work correctly, when Skx * sgn( <w'x'> ) >= 0,editnew_tsdadg_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F901be60070880272802ecd85639370eaaa7130eead1508884727000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order to clarify coding in CLUBB, I am moving a block of code that is specific to ADG1 and ADG2 to inside their driver subroutines, rather than keep it outside the driver subroutines, in subroutine pdf_closure, where it is more confusing to someone trying to understand the flow of the code. I also added the full PDF unit test for ADG1. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8484 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dcefdbe88476adfa5843797ca9b175f0532ba91d 2017-10-24 22:38:47 +00001be60070880272802ecd85639370eaaa7130eeadIn order to clarify coding in CLUBB, I am moving a block of code that iseditpdf_closure_module.F90editadg1_adg2_3d_luhar_pdf.F90adg1_adg2_3d_luhar_pdf.F90284816e2267c454cec10b226e2a9e4f5beed04791509086030000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved when wp2 became very small. This bug is being fixed by treating the rtp2, thlp2, and sclrp2 distributions as single Gaussians in this limit. CLUBB Trac ticket reference: clubb:ticket:809. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8485 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6fc49c6d8ff3e053530b7120b4085ec62f6b1c3c 2017-10-27 06:33:50 +0000284816e2267c454cec10b226e2a9e4f5beed0479I am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved wheneditadg1_adg2_3d_luhar_pdf.F90new_tsdadg_pdf.F90f254c056660b61f160ad0ddb4add793c7fb6cedb1509086289000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the TSDADG PDF by adding the responding variable description, the responding variable subroutine, and the driver subroutine. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8486 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5aee19d916b7c32862b399d9be7cf52aa8cc95e9 2017-10-27 06:38:09 +0000f254c056660b61f160ad0ddb4add793c7fb6cedbI updated the TSDADG PDF by adding the responding variable description, theeditnew_tsdadg_pdf.F90pdf_closure_module.F908c5f2d26747d7b6a9fbd65eae0ce0a4dc8d6fb241509142043000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen ADG1 or ADG2 are not used, we have to set alpha_rt, alpha_thl, and alpha_sclr to values (their default values) in order to avoid a runtime error from the Oracle compiler. Previous, we had been adding statements after the call to every non-ADG1-or-ADG2 PDF. I am changing that to do it in one spot, similar to the setting of the F_w, etc. output when the new PDF is used. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8488 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3dda9fdc4aa7793281899453d947140fd8e9e9ab 2017-10-27 22:07:23 +00008c5f2d26747d7b6a9fbd65eae0ce0a4dc8d6fb24When ADG1 or ADG2 are not used, we have to set alpha_rt, alpha_thl, andeditpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F9082e4512cd314dd9167d6fdf34c1c0131f534bae41509144224000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am calling the new TSDADG PDF from subroutine pdf_closure. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8489 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 47b687afb77aba9f3ad508722183a92a76cafff7 2017-10-27 22:43:44 +000082e4512cd314dd9167d6fdf34c1c0131f534bae4I am calling the new TSDADG PDF from subroutine pdf_closure.editpdf_closure_module.F90editadvance_clubb_core_module.F90new_tsdadg_pdf.F909e30e75783f5497150bf902e5ad196bf0c6644441509146193000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClarity changes to the new TSDADG PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8490 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 90d307cbedb920815bea8b4cb3e38bbf678ceee6 2017-10-27 23:16:33 +00009e30e75783f5497150bf902e5ad196bf0c664444Clarity changes to the new TSDADG PDF.editnew_tsdadg_pdf.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F904f8df90fd67b0ffb5fd8b8529e1ec87c7b49e7101509402367000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added some references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8491 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0909638d763d531940e2c39d0f29781bc944ba30 2017-10-30 22:26:07 +00004f8df90fd67b0ffb5fd8b8529e1ec87c7b49e710I added some references to the CLUBB-SILHS tech doc.editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90new_tsdadg_pdf.F90d619f5f53cd31fd5e70aed41cdcab497d5e3bde31509666227000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the calculation of PDF component variances in the new TSDADG PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8492 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0f2d324713d9aceaeb79e1068f22a5961d392fdb 2017-11-02 23:43:47 +0000d619f5f53cd31fd5e70aed41cdcab497d5e3bde3I fixed a bug in the calculation of PDF component variances in the new TSDADGeditnew_tsdadg_pdf.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90grid_class.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F9019feff73609725876ea3aecc264562c49276db711509740754000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added more references to the CLUBB-SILHS tech doc. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8493 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9bbd2e209eb3c3eabfc3bb809173a9c749aa91bf 2017-11-03 20:25:54 +000019feff73609725876ea3aecc264562c49276db71I added more references to the CLUBB-SILHS tech doc.editgrid_class.F90editadvance_xm_wpxp_module.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90new_pdf_main.F9098527ca18b054a23337b2f533c07615fa3ea4eaa1510125763000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have set the tunable parameters F_x and zeta_x to skewness functions for the new PDF. Coefficients are currently declared in the driver subroutine and then passed into subroutines and functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8496 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c22cd4b53994328617fc67e53a7790cf1126a814 2017-11-08 07:22:43 +000098527ca18b054a23337b2f533c07615fa3ea4eaaI have set the tunable parameters F_x and zeta_x to skewness functions for theeditnew_pdf_main.F90stats_clubb_utilities.F90stats_zt_module.F90ccc0b6d541c0713648245747ab1eadaf9cfe888a1510273958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI needed to increase the limit of nvarmax_zt so that LBA (and other cases that use Morrison microphysics) could be run with all_stats.in. I also improved the warning messages when the number of variables exceeds nvarmax_***. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8500 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3f2cd8d90c71f059c2a0f5fe634139e31b77e32d 2017-11-10 00:32:38 +0000ccc0b6d541c0713648245747ab1eadaf9cfe888aI needed to increase the limit of nvarmax_zt so that LBA (and othereditstats_zt_module.F90editstats_clubb_utilities.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90grid_class.F90advance_xm_wpxp_module.F9010430950c7c61a6d3a595323d24a1307aab1a0571510584442000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI changed the URL references to the CLUBB-SILHS overview document. Instead of pointing to the larson-group.com webpage, they now point to arxiv.org. The shorter URL forestalls error messages from the CLUBB standards script. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8501 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9a8b38e22f389eff1c4a482ad5b599746d904ca5 2017-11-13 14:47:22 +000010430950c7c61a6d3a595323d24a1307aab1a057I changed the URL references to the CLUBB-SILHS overview document.editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editpdf_closure_module.F90editgrid_class.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90mixing_length.F90advance_wp2_wp3_module.F90index_mapping.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90Nc_Ncn_eqns.F90stats_clubb_utilities.F90surface_varnce_module.F90array_index.F90corr_varnce_module.F905d4fb30b6c9723bafca4801a43b485a2ff04d90e1510970587000http://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhoc_browserChanged variable and subroutine names, see ticket 810 and 811 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8505 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 70c6930d3e20937b44ab1952c25f13703271bcf4 2017-11-18 02:03:07 +00005d4fb30b6c9723bafca4801a43b485a2ff04d90eChanged variable and subroutine names, see ticket 810 and 811editadvance_clubb_core_module.F90editclubb_api_module.F90editmixing_length.F90editstats_clubb_utilities.F90editindex_mapping.F90editsurface_varnce_module.F90editarray_index.F90editcorr_varnce_module.F90editnumerical_check.F90editNc_Ncn_eqns.F90editadvance_wp2_wp3_module.F90LY93_pdf.F90advance_clubb_core_module.F90pdf_closure_module.F9087941baa3c7e8cac1b5fc43eb23d3f5376ce79291511303535000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the Lewellen and Yoh (1993) PDF to CLUBB for testing and comparison purposes. It has also been interfaced to CLUBB's unit testing and passes all unit tests. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8507 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b69cefc1eaee288c3bb9148f29f217bde5d22c2 2017-11-21 22:32:15 +000087941baa3c7e8cac1b5fc43eb23d3f5376ce7929I have added the Lewellen and Yoh (1993) PDF to CLUBB for testing and comparisoneditpdf_closure_module.F90addLY93_pdf.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90155144632ea823a8aad31c4e92c5dd2b12bd62fc1511310324000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed line length exceding 100 characters warnings git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8510 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5abcc9ff7571f0b1ee60353d593f0c9f6145e5ea 2017-11-22 00:25:24 +0000155144632ea823a8aad31c4e92c5dd2b12bd62fcFixed line length exceding 100 characters warningseditadvance_clubb_core_module.F90advance_clubb_core_module.F90mixing_length.F90cf54191c724355605855f800ef1e96aef010a2cb1512172470000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the arrangement of variables in the subroutine compute_mixing_length as well as calls to it clubb:ticket:815 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8513 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cafe9e697d9af413bdcfeee991fd94f7813cc6b7 2017-12-01 23:54:30 +0000cf54191c724355605855f800ef1e96aef010a2cbChanged the arrangement of variables in the subroutine compute_mixing_length as well as calls to it clubb:ticket:815editadvance_clubb_core_module.F90editmixing_length.F90advance_clubb_core_module.F901261bdb1eb0192241599c0695e77dbb74f33b4ab1512410380000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed lines exceeding 100 characters warnings clubb:ticket:815 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8514 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5706620361cc9b71e02f6527da0fe30869e37fe0 2017-12-04 17:59:40 +00001261bdb1eb0192241599c0695e77dbb74f33b4abFixed lines exceeding 100 characters warnings clubb:ticket:815editadvance_clubb_core_module.F90advance_clubb_core_module.F90b9d643f8efaabb8279bdb89230899dc95569bd321513099575000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added an option to incorporate the buoyancy term into CLUBB's eddy diffusivity for momentum. This option is controlled by the flag l_use_buoy_mod_Km_zm, but that flag is set to false, and so this commit should leave the answers bit for bit identical. For clubb:ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8515 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1f56ceb1efb1b3d32e2fe232bdfa180a952e1aaf 2017-12-12 17:26:15 +0000b9d643f8efaabb8279bdb89230899dc95569bd32I added an option to incorporate the buoyancy term into CLUBB's eddy diffusivity for momentum.editadvance_clubb_core_module.F90advance_clubb_core_module.F907dbb97784343b514c33d7f8b85578d0af7b9cb2d1513100152000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added c_K10 as a tuning parameter in front of the new momentum eddy diffusivity. Again, the results shouldn't change because the option is shut off. For clubb:ticket:791 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8516 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c31cb2119386f1d98fd944e43db018ed1356d27c 2017-12-12 17:35:52 +00007dbb97784343b514c33d7f8b85578d0af7b9cb2dI added c_K10 as a tuning parameter in front of the new momentum eddy diffusivity.editadvance_clubb_core_module.F90output_grads.F90clubb_api_module.F90output_netcdf.F90Skx_module.F90setup_clubb_pdf_params.F90variables_diagnostic_module.F90anl_erf.F90advance_helper_module.F90852d264a2c802e30cd4e0f83cab4c9d417c77d061515116246000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved unused parameters to clear warnings clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8519 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9b8095c6e057e7c0aa9d430ad419ad03a4065683 2018-01-05 01:37:26 +0000852d264a2c802e30cd4e0f83cab4c9d417c77d06Removed unused parameters to clear warnings clubb:ticket:803editsetup_clubb_pdf_params.F90editvariables_diagnostic_module.F90editSkx_module.F90editclubb_api_module.F90editadvance_helper_module.F90editoutput_netcdf.F90editanl_erf.F90editoutput_grads.F90advance_clubb_core_module.F90a63e4c88b6bcbd69a45cd2c6216327a9b01cffb01515451999000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI multiplied the eddy diffusivity for momentum by a skewness-dependent factor that is intended to reduce momentum flux in cumulus layers. The idea is that the cumuli contribute an upgradient flux that is not taken into account by our prior downgradient formulation. However, the results should be bit-for-bit identical since the flag that implements this, l_use_buoy_mod_Km_zm, is set to false. For ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8520 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4b601fea96554aac3e98e5bc3745bac6d2205c25 2018-01-08 22:53:19 +0000a63e4c88b6bcbd69a45cd2c6216327a9b01cffb0I multiplied the eddy diffusivity for momentum by a skewness-dependent factoreditadvance_clubb_core_module.F90pdf_closure_module.F90new_pdf_main.F90c5944a96c830d5fbbe8595c7673cbfbe30c90c3e1515477099000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the way that F_rt and F_thl are set in the new PDF. They are now set as a constant interpolation between min_F_x and max_F_x (where x is rt or thl), and the F_rt value can be reduced (toward min_F_rt) by exp_factor_rt, which is dependent on the adjusted (overall) correlation of rt and thl. The adjusted (overall) correlation of rt and thl is: adj_corr_rt_thl = rtpthlp / ( sqrt( rtp ) * sqrt( thlp2 ) ) * sgn( wprtp ) * sgn( wpthlp ). The exp_factor_rt is: exp_factor_rt = 1 - exp{ -0.2 * ( adj_corr_rt_thl + 1 )^5^ }. The equation for F_rt is: F_rt = min_F_rt + ( max_F_rt - min_F_rt ) * coef_rt * exp_factor_rt; where 0 <= coef_rt <= 1. The equation for F_thl is: F_thl = min_F_thl + ( max_F_thl - min_F_thl ) * coef_thl; where 0 <= coef_thl <= 1 (and where exp_factor_thl is simply set to 1). CLUBB Trac ticket references: clubb:ticket:777 and clubb:ticket:808. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8521 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c7465ccca8ca132cae3740697ffb3ecf87b45781 2018-01-09 05:51:39 +0000c5944a96c830d5fbbe8595c7673cbfbe30c90c3eI changed the way that F_rt and F_thl are set in the new PDF. They are now seteditpdf_closure_module.F90editnew_pdf_main.F90new_pdf_main.F90085d3f50af1eebbbaa47033513bccf03506ab3ec1515477557000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the flag setting on the new PDF so that it always uses w as the setter variable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8522 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8df06311b269503e0721d31861f86af7a560f3d 2018-01-09 05:59:17 +0000085d3f50af1eebbbaa47033513bccf03506ab3ecI changed the flag setting on the new PDF so that it always uses w as the settereditnew_pdf_main.F90advance_wp2_wp3_module.F90mixing_length.F90pdf_utilities.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90fill_holes.F90Nc_Ncn_eqns.F90adg1_adg2_3d_luhar_pdf.F90surface_varnce_module.F90corr_varnce_module.F90mono_flux_limiter.F90ae9ae3e3dc30bd359760c86bee918562732d78591516236601000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8535 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 83f1ba5f428ff05246a994886955eca43d7cfe7b 2018-01-18 00:50:01 +0000ae9ae3e3dc30bd359760c86bee918562732d7859Changed many equality comparisons using == to a safer epsilon method, this should end up being BIT_CHANGING, clubb:ticket:803editfill_holes.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editmixing_length.F90editsurface_varnce_module.F90editcorr_varnce_module.F90editNc_Ncn_eqns.F90editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90editpdf_utilities.F90editadg1_adg2_3d_luhar_pdf.F90interpolation.F900f8a60bbc1f530c8ff72359bad1438b0a5ee610f1516410520000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved binary search algorithm clubb:ticket:818 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8536 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8f8b516d82350d2ceff815e5fa1a153d1908f4ac 2018-01-20 01:08:40 +00000f8a60bbc1f530c8ff72359bad1438b0a5ee610fImproved binary search algorithm clubb:ticket:818editinterpolation.F90interpolation.F901cbe16fb05b01b1b4cf50b2c65deb6c5ceb310981516661233000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded warning messages to function binary_search clubb:ticket:818 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8537 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 55a8aaab680d5c3fc8c5d26479a4a3ec00dd25f0 2018-01-22 22:47:13 +00001cbe16fb05b01b1b4cf50b2c65deb6c5ceb31098Added warning messages to function binary_search clubb:ticket:818editinterpolation.F90Nc_Ncn_eqns.F90advance_xp2_xpyp_module.F90adg1_adg2_3d_luhar_pdf.F906f7801daba3f1a59ce0a4c8c41d6c871fe9595021516662112000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved unused variables causing warnings clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8538 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 447dda2b6f9f50dbdc0ead7ebb04c82173e5ad39 2018-01-22 23:01:52 +00006f7801daba3f1a59ce0a4c8c41d6c871fe959502Removed unused variables causing warnings clubb:ticket:803editNc_Ncn_eqns.F90editadvance_xp2_xpyp_module.F90editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F90new_pdf_main.F9032948e0ff5444ecbf76708f75bd469a8bd2dbf271516688723000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the call to the new PDF so that Skrt and Skthl are intent INOUT variables. In the scenario that either one (or both) of these skewnesses are clipped in the new PDF, the updated values of Skrt and Skthl are passed out. This is necessary for the PDF parameter unit tests to work properly. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8539 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8c597babe3e55f0052ca3b582ed7f5aaf64a3e3e 2018-01-23 06:25:23 +000032948e0ff5444ecbf76708f75bd469a8bd2dbf27I updated the call to the new PDF so that Skrt and Skthl are intent INOUTeditpdf_closure_module.F90editnew_pdf_main.F90precipitation_fraction.F901911423245af862a7eb5e57f8e9bcc91b8af88d81516832610000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8545 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bf1ce0c334d2290189095d16da33b3298eea51be 2018-01-24 22:23:30 +00001911423245af862a7eb5e57f8e9bcc91b8af88d8Removed many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803editprecipitation_fraction.F90pdf_closure_module.F90d56edc54adcaea428260146d038a0f6893a6bcdc1516914489000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. This function calculates the <w'x'y'> term that I derived by integrating over the PDF. This function is used to calculate <w'rt'thl'>. Shortly, it will also be used to calculate <w'sclr'rt'> and <w'sclr'thl'>. This new calculation of <w'x'y'> allows for the PDF component correlations involving w to have a value other than 0. This generalizes the calculation for a PDF other than ADG1 or ADG2. CLUBB's calculation of wprtpthlp in pdf_closure is currently just used for statistical output. For ADG1, the old form and the new form of wprtpthlp produce the same result mathematically. However, owing to numerical roundoff, the results of the wprtpthlp in the new revision are BIT_CHANGING compared to the old revision. Otherwise, the results in GrADS output files for all other outputs from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:777 and clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8546 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 85a115499facd5577647492c2a1cc8c1419b2426 2018-01-25 21:08:09 +0000d56edc54adcaea428260146d038a0f6893a6bcdcI am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. Thiseditpdf_closure_module.F90pdf_closure_module.F90fd7aa20bb54009799ca395df136dc7703462c6981516914792000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI finished adding the units to the variable descriptions in function calc_wpxpyp_pdf. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8547 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 227018a956203820e0e6e3deb63d7064442e00ad 2018-01-25 21:13:12 +0000fd7aa20bb54009799ca395df136dc7703462c698I finished adding the units to the variable descriptions ineditpdf_closure_module.F90pdf_closure_module.F905c5313f5a0d4fc7b43a834ff3603f7ea4312d8b31516921136000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe calculation of higher-order scalar terms <w'^2^ sclr'>, <w'sclr'^2^>, <w'sclr'rt'>, and <w'sclr'thl'> are now generalzed for any PDF type. For ADG1, the old form and the new form of these scalar terms produce the same results mathematically. However, owing to numerical roundoff, the results of the calculations in the new revision are altered compared to the old revision. Since scalar calculations aren't output to standard stats, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8548 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1de02e2e856ebe28ccf7fa96e26e146a7c1de5fe 2018-01-25 22:58:56 +00005c5313f5a0d4fc7b43a834ff3603f7ea4312d8b3The calculation of higher-order scalar terms <w'^2^ sclr'>, <w'sclr'^2^>,editpdf_closure_module.F90parameters_tunable.F90parameter_indices.F90new_pdf_main.F90clubb_api_module.F90e6afdac47f9659f2f9d0616bf08f7f036ecde46f1517097814000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the tunable or adjustable parameters for the new PDF to CLUBB's list of tunable parameters. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8550 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c2d6df498f894b70febc252006b96502a6877d88 2018-01-28 00:03:34 +0000e6afdac47f9659f2f9d0616bf08f7f036ecde46fI added the tunable or adjustable parameters for the new PDF to CLUBB's listeditnew_pdf_main.F90editparameters_tunable.F90editclubb_api_module.F90editparameter_indices.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90numerical_check.F90pdf_closure_module.F90diagnose_correlations_module.F90new_pdf_main.F90advance_helper_module.F903a41920e95d798623cc40f94168d709e0654c81a1517876940000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed various warnings. Mainly by removing unused variables and commenting out unused procedures. See clubb:ticket:803 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8567 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9fcc71ba9fe9e105b1180b1357a4a8513073d9fc 2018-02-06 00:29:00 +00003a41920e95d798623cc40f94168d709e0654c81aFixed various warnings. Mainly by removing unused variables and commenting out unused procedures. See clubb:ticket:803editdiagnose_correlations_module.F90editnew_pdf_main.F90editpdf_closure_module.F90editadvance_helper_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90editnumerical_check.F90editadvance_clubb_core_module.F90new_pdf_main.F904200fe360ce72c7377df0b0f5c80643f8d7497f01517981333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a line of code that limits the adjusted correlation of rt and theta-l at max_mag_correlation or -max_mag_correlation. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8569 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b92144149facd0a7521fbcdba3baac2f3cd6a4c6 2018-02-07 05:28:53 +00004200fe360ce72c7377df0b0f5c80643f8d7497f0I am committing a line of code that limits the adjusted correlation of rt andeditnew_pdf_main.F90advance_clubb_core_module.F908dc0d797bb099c02aed79d9360606e549e23ff5e1518207624000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI implemented a new method to handle cumulus momentum fluxes. It approximates upthvp in terms of dthlm/dz. The old method, based on Skw, has been commented out. This should not change answers because l_use_buoy_mod_Km_zm = .false. For clubb:ticket:791. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8577 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 97de0326fbb8c32763efecac95e27e8fe7204361 2018-02-09 20:20:24 +00008dc0d797bb099c02aed79d9360606e549e23ff5eI implemented a new method to handle cumulus momentum fluxes.editadvance_clubb_core_module.F90pdf_closure_module.F90Nc_Ncn_eqns.F90mono_flux_limiter.F903290e0eba4a72f8a7ec08d543e1105ab05cc85971519264565000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwitched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8581 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c47f680bc0e4fa7ba6a8989a2c15a9f3b1a3ece3 2018-02-22 01:56:05 +00003290e0eba4a72f8a7ec08d543e1105ab05cc8597Switched from using the erf function defined by anl_erf to the intristic erf function. This should be BIT_CHANGING see clubb:ticket:804editpdf_closure_module.F90editmono_flux_limiter.F90editNc_Ncn_eqns.F90anl_erf.F9067891bdb3d2819c6e890c4ea998b2c25fc64607a1519264797000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved file anl_erf.F90, it is no longer used git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8582 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 889fed911d2db4710e36ccacba8ee82ebc6cb85c 2018-02-22 01:59:57 +000067891bdb3d2819c6e890c4ea998b2c25fc64607aRemoved file anl_erf.F90, it is no longer useddeleteanl_erf.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90496afc42dfa487aa03127eaae63bef0ab026d5531519716378000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering the solution to the wp3 predictive equation to calculate the turbulent advection term and the turbulent production term independently. Mathematically, the code is still the same, but numerically, there will be round-off level differences between the old version and the new version. This revision is BIT_CHANGING. However, plotgen shows that lines for the old version and the new version overlap. The only cases that show any differences are the cases that are traditionally extremely sensitive. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8584 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 817ad4cce25c98568f8b5f7239e623c56505195d 2018-02-27 07:26:18 +0000496afc42dfa487aa03127eaae63bef0ab026d553I am altering the solution to the wp3 predictive equation to calculate theeditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90model_flags.F9058ac5319ebb7dbec2410e3dff1fa80c3999a9be51519792557000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed the problem with the wp3 budgets as a result of r8584. The budgets in the new revision now match (lines overlap) the budgets from r8583. I also added the l_use_explicit_turbulent_adv flag, which will be used to allow an explicit treatment of the turbulent advection term (for those equations where the turbulent advection term is calculated by integrating over the PDF). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8585 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 15e67de170ecb2fe141ad76cccf699e67883d1e0 2018-02-28 04:35:57 +000058ac5319ebb7dbec2410e3dff1fa80c3999a9be5I fixed the problem with the wp3 budgets as a result of r8584. The budgets ineditmodel_flags.F90editadvance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F900908a71238f2462ae5f5b6b88c52689ba918e13f1519940856000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the names of the turbulent advection functions that are closed by the PDF (from integration over the PDF). The current functions have been altered to include ADG1 in their names, because the closure is done by assuming ADG1 is the PDF used. The results of this revision are an exact match to the results from the previous revision for all cases. However, yesterday's clubb:r8587 changed results without including BIT_CHANGING in the commit message, so that is being added here to reset the appropriate Bitten test. CLUBB Trac ticket reference: clubb:ticket:804. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8589 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 59983e00cb8d7b0d64af979ab088c411ff760466 2018-03-01 21:47:36 +00000908a71238f2462ae5f5b6b88c52689ba918e13fI altered the names of the turbulent advection functions that are closed byeditadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F9054acce1ef42b67cfeff425f4b147f1a396d108f21519941671000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a couple comments about how the discretization of the turbulent advection terms are specific to the ADG1 PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8590 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6759e06e920dd46cbd647292b8f39a9f1fe53acd 2018-03-01 22:01:11 +000054acce1ef42b67cfeff425f4b147f1a396d108f2I added a couple comments about how the discretization of the turbulenteditadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F906bbed2efbc5d562a7f4aded4c5b0d5eadba2912b1519976572000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the function that sets up the implicit calculation of the wp3 turbulent advection term for the new PDF. This has not yet been interfaced with the code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8591 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 782eb348eff41c4908448320d84b859108e3bcd6 2018-03-02 07:42:52 +00006bbed2efbc5d562a7f4aded4c5b0d5eadba2912bI added the function that sets up the implicit calculation of the wp3 turbulenteditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F9060e6f11dd819cafcfa5a4c6b1f7c3ed713d1f6541520044506000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a function that calculates the explicit form of the wp3 turbulent advection term to advance_wp2_wp3_module.F90. This option works for any PDF type. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8592 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3e9e64e2476e7196d4b35f62eabb21b4fb684a1f 2018-03-03 02:35:06 +000060e6f11dd819cafcfa5a4c6b1f7c3ed713d1f654I added a function that calculates the explicit form of the wp3 turbulenteditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90821c06bfa97f773d98c40085edb2645fd6e407be1520281347000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a function to calculate the turbulent advection of wpxp explicitly. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8593 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23fe1bf4037d21c1827c4ff9e46012a5f88090b5 2018-03-05 20:22:27 +0000821c06bfa97f773d98c40085edb2645fd6e407beI am adding a function to calculate the turbulent advection of wpxp explicitly.editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90advance_xp2_xpyp_module.F905234cd6880cd9f87b335bc9ad183df7bb74a59921520286920000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a function to calculate the turbulent advection of xp2 and xpyp explicitly. This option works for any PDF type. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8594 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 501c3fde5d6941d5913c78f7106c70681d33d9b6 2018-03-05 21:55:20 +00005234cd6880cd9f87b335bc9ad183df7bb74a5992I am adding a function to calculate the turbulent advection of xp2 and xpypeditadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_clubb_core_module.F90model_flags.F90186420004c5507db0ee5040a91b25298e89ca8db1520310367000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI interfaced the wp3 explicit turbulent advection code with CLUBB. It is turned off by default. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8595 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 985667d04c031b0b8feb554b6edb1260a3e94faf 2018-03-06 04:26:07 +0000186420004c5507db0ee5040a91b25298e89ca8dbI interfaced the wp3 explicit turbulent advection code with CLUBB. It iseditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editpdf_closure_module.F90editmodel_flags.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F9048ea03ac7ef620f41952bc774f75e0ee29a68f711520401533000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am interfacing the wpxp explicit turbulent advection option with the rest of the code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8596 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b092b91fbe367a6a286ce1eb60b65edb011e5157 2018-03-07 05:45:33 +000048ea03ac7ef620f41952bc774f75e0ee29a68f71I am interfacing the wpxp explicit turbulent advection option with the rest ofeditadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F907d58047821a003b123d8388e646c29942dee2ab31520452845000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a small bug with the explicit turbulent advection option for wpxp. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8597 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f5b172c76dd5ad50fd0f97c306454957ccad410f 2018-03-07 20:00:45 +00007d58047821a003b123d8388e646c29942dee2ab3I fixed a small bug with the explicit turbulent advection option for wpxp.editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90advance_xp2_xpyp_module.F90pdf_closure_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90ecda7108a1fdb1ec9d9ea3b17af63c07090db3d11520462369000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am interfacing the xp2/xpyp explicit turbulent advection term with CLUBB code. This works generally for any PDF type. CLUBB Trac ticket reference: CLUBB:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8598 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9af9946863af42ee030e3b4db8c5ae82b5708d49 2018-03-07 22:39:29 +0000ecda7108a1fdb1ec9d9ea3b17af63c07090db3d1I am interfacing the xp2/xpyp explicit turbulent advection term with CLUBB code.editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90new_pdf_main.F904c69f1b72a411929d718806f5cda271949ad9a431520551911000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the l_explicit_turbulent_adv_* family of flags to the new PDF, for some calculations don't need to be made when turbulent advection is being treated explicitly. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8599 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f477c736d61efd958d2442176fcdf3ca91f10bd2 2018-03-08 23:31:51 +00004c69f1b72a411929d718806f5cda271949ad9a43I added the l_explicit_turbulent_adv_* family of flags to the new PDF, for someeditnew_pdf_main.F90advance_clubb_core_module.F90new_pdf_main.F90pdf_closure_module.F90199de59e71871807cd93bcb4ebc98e799a85a3491520977857000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am packing up the implicit coefficients and explicit terms calculated by the new PDF into a derived type variable. That variable is passed back to advance_clubb_core so it can be used for such things as implicit turbulent advection of wp3, etc. This variable is also passed into the PDF parameter unit tests. There, in the future, it will be used for such things as double checking such things as: wp4 = coef_wp4_implicit * wp2^2^, etc. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8602 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c69c21bfdbfa0ab19a6545692b1682ecf34cdaba 2018-03-13 21:50:57 +0000199de59e71871807cd93bcb4ebc98e799a85a349I am packing up the implicit coefficients and explicit terms calculated by theeditadvance_clubb_core_module.F90editnew_pdf_main.F90editpdf_closure_module.F90model_flags.F90a89104550d9e46e533fa31bf3bd92c83677614b61520982937000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8603 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b8da02f687d55e0d56b7d1c141da50be60d06ada 2018-03-13 23:15:37 +0000a89104550d9e46e533fa31bf3bd92c83677614b6Made epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804editmodel_flags.F90new_pdf.F906d734fcb31a8876c05eae5b5ad869762c825603d1521052615000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90. A small bug was brought to light by last night's G unit test failure. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8604 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: bfdba85d07239103cc20ee7cf1445976d442f95c 2018-03-14 18:36:55 +00006d734fcb31a8876c05eae5b5ad869762c825603dI made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90.editnew_pdf.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F901624553b92964a93b60b81bc053b580e43ebd2871521067112000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed interfacing the implicit form of the wp3 turbulent advection term for the new PDF with the rest of the CLUBB code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8605 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 33dfdbb42d1322be71e5011913a6a57fb2e0aa31 2018-03-14 22:38:32 +00001624553b92964a93b60b81bc053b580e43ebd287I have completed interfacing the implicit form of the wp3 turbulent advectioneditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F9042c5e04bcbd0387f44c6b3ac17b9ebbb787579f91521069079000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advection of wp3 at thermodynamic level 2 is based on wp4 at momentum levels 1 and 2. The value of wp4 at momentum level 1 is calculated by interpolating the values of wp4_zt that is calculated by integrating over the PDF at thermodynamic levels 1 and 2. However, the values that come from the call to pdf_closure at thermodynamic level 1 (the "below ground" level) are unreliable because the inputs are unreliable at that particular level. The best solution is to simply set wp4 at momentum level 1 to 0. This also matches the value of wp4 at the upper boundary. By default, CLUBB does not use explicit turbulent advection. However, the results are technically BIT_CHANGING because wp4 is still output to statistics. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8606 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e5488acd9de2a8e9219a27ff57c3cba664c8826c 2018-03-14 23:11:19 +000042c5e04bcbd0387f44c6b3ac17b9ebbb787579f9When the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advectioneditadvance_clubb_core_module.F90Skx_module.F90f645a7fa5b5eab7ab36b427730226ba206db0d6a1521147148000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI cleaned up the Skx_module and added an additional function, xp3_LG_2005_ansatz, which calculates xp3 using Skx from the LG 2005 ansatz. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8608 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 709538fce7534b77ec33ae37bbb69353379f7672 2018-03-15 20:52:28 +0000f645a7fa5b5eab7ab36b427730226ba206db0d6aI cleaned up the Skx_module and added an additional function,editSkx_module.F90advance_clubb_core_module.F90model_flags.F90Skx_module.F900f015a9eca1f27ecd084f20d80713c35e94db7c91521151331000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug in the calculation of scalar skewness. It was being set to 0, causing problems with the new PDF. I corrected the bug and I also made the scalar skewness code a little more user friendly. It is now controlled by a flag, l_use_xp3_LG_2005_ansatz, which is set to true by default. In the default ADG1 code, the LG 2005 ansatz is not used interactively. It only outputs to stats. This commit is BIT_CHANGING only because statistics change. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8610 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d86300fff06c4ae2f1d5673e6a0e1c22cf8566a6 2018-03-15 22:02:11 +00000f015a9eca1f27ecd084f20d80713c35e94db7c9I fixed a bug in the calculation of scalar skewness. It was being set to 0,editadvance_clubb_core_module.F90editmodel_flags.F90editSkx_module.F90advance_clubb_core_module.F90bce822492723d4d4b56113dc49125951ee4f004d1521152411000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the location of the LG 2005 ansatz to calculate xp3 because it would be more helpful for testing purposes before the first call to pdf_closure_driver (which is the call we use). In default CLUBB, this affects only statistics. However, this change is technically BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8611 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3a1c774648552b4fb8b0d3e4799bd460890f8b3b 2018-03-15 22:20:11 +0000bce822492723d4d4b56113dc49125951ee4f004dI moved the location of the LG 2005 ansatz to calculate xp3 because it would beeditadvance_clubb_core_module.F90advance_clubb_core_module.F90a85dc94233b2feac1f7631b66fc16268f1bd47111521251292000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI reverted clubb:r8611 because (1) having the code in the other location introduced a bug, and (2) upon further review, it just makes more sense in this location, and is more consistent with the rest of the code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8614 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71881434bb65be73688a08b4f88bd556f1733a6b 2018-03-17 01:48:12 +0000a85dc94233b2feac1f7631b66fc16268f1bd4711I reverted clubb:r8611 because (1) having the code in the other locationeditadvance_clubb_core_module.F90advance_xp2_xpyp_module.F905eb6a87a6ff59bcc68d56a668a1fddf396f07a4a1521502260000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new function, term_ta_new_pdf_lhs, to advance_xp2_xpyp_module.F90. This function will handle the implicit turbulent advection for xp2 and the implicit portion of the semi-implicit turbulent advection for xpyp for the new PDF. This code has not yet been interfaced with the rest of CLUBB. The previous commit, r8614, changed statistical results, but I forgot to put a BIT_CHANGING in the log message, so here it is. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8615 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4a56ec579a61738b9a433cadb76b95ea2e234052 2018-03-19 23:31:00 +00005eb6a87a6ff59bcc68d56a668a1fddf396f07a4aI have added a new function, term_ta_new_pdf_lhs, toeditadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F901a64aba9e0965e5ca2be2ae42114ecfd18324a881521603467000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have linked the implicit turbulent advection code for rtp2 and thlp2 to the rest of the CLUBB code. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8616 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5c892b7b825cfdea679a968ea139fa8e360c758a 2018-03-21 03:37:47 +00001a64aba9e0965e5ca2be2ae42114ecfd18324a88I have linked the implicit turbulent advection code for rtp2 and thlp2 to theeditadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_xp3_module.F9032ef7b3f76f1eeb30646cd50c0c3f6d0fd9138151521949587000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new file that has two options for handling the xp3 term for scalars (thlp3, rtp3, and sclrp3). Both options are based on the d(xp3)/dt equation. One option predicts xp3 with the turbulent production, accumulation, and turbulent dissipation terms. The other option uses a steady-state approximation (dxp3/dt = 0) and calculates xp3 from the same three terms, since xp3 is found in the turbulent dissipation term. This has not yet been interfaced with the rest of the CLUBB code. When it is, this code will be one option for calculating xp3, with the other option being the ansatz. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8618 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7be02a8f18fcc08247c90045078ea95a36bc041e 2018-03-25 03:46:27 +000032ef7b3f76f1eeb30646cd50c0c3f6d0fd913815I have added a new file that has two options for handling the xp3 term foraddadvance_xp3_module.F90advance_xp3_module.F90advance_clubb_core_module.F90model_flags.F9036fc76e515e1809b0c2db8c8acbb6caf6c2bc5e41521954033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have interface the new xp3 code to the rest of CLUBB. It can be turned on with the l_advance_xp3 flag in model_flags.F90. It is turned off by default, which means that default CLUBB still continues to use the ansatz to calculate xp3. The results in GrADS output files from this revision are and exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8619 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8b94ac8fb33138049c067c06d5aeae2c4279510b 2018-03-25 05:00:33 +000036fc76e515e1809b0c2db8c8acbb6caf6c2bc5e4I have interface the new xp3 code to the rest of CLUBB. It can be turned oneditadvance_xp3_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90advance_clubb_core_module.F90advance_xp3_module.F90817b7d5301840ee5fa5fe98b74b066903a356caa1522268903000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a driver level subroutine for the new advance xp3 code. This will make it easier to add xp3 budget statistics. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8622 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d0f2a8e83ed686b15cee05cecf437abc9528da86 2018-03-28 20:28:23 +0000817b7d5301840ee5fa5fe98b74b066903a356caaI added a driver level subroutine for the new advance xp3 code. This will makeeditadvance_clubb_core_module.F90editadvance_xp3_module.F90advance_xp3_module.F90stats_variables.F90stats_zt_module.F907d820dc808911b68c5bc7b3bc79824426e2e6beb1522276133000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added budget stats for rtp3 and thlp3 to CLUBB. Since this commit adds statistics, it is technically BIT_CHANGING. However, the results in GrADS zm, sfc, etc. output files from this revision are an exact match to the results in the same GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8624 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1f320b0d32ee3c7f42a22465d991fcfa69645df 2018-03-28 22:28:53 +00007d820dc808911b68c5bc7b3bc79824426e2e6bebI added budget stats for rtp3 and thlp3 to CLUBB.editstats_zt_module.F90editadvance_xp3_module.F90editstats_variables.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90ddc181ff3266df2b2d9620d409d13c09cab4d2bd1523057575000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding code that allows the turbulent advection of wpxp to be treated semi-implicitly for the new PDF. The wpxp code was already split into two sections based on an "if" statement. One section uses a single left-hand side, and the other section uses three left-hand sides (for wprtp, wpthlp, and wpsclrp). The new code has been added to the section with three left-hand sides. For the section with a single left-hand side, dummy variables are passed instead. The default is to call the single left-hand side, and it will remain that way. When the single left-hand side is called, the new PDF must use explicit turbulent advection. However, since the code was already there for the section with three left-hand sides, it made sense to enter the semi-implicit code in that section. This way, for the new PDF, the semi-implicit turbulent advection can be compared to the explicit turbulent advection to see if there is any downgrade in results. For ADG1, the implicit turbulent advection and the explicit turbulent advection produce very similar results. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8629 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 71546e35186628f4a7290aac600d51d946fe5eda 2018-04-06 23:32:55 +0000ddc181ff3266df2b2d9620d409d13c09cab4d2bdI am adding code that allows the turbulent advection of wpxp to be treatededitadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90diagnose_correlations_module.F90stats_type_utilities.F90grid_class.F90setup_clubb_pdf_params.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90error_code.F90pdf_closure_module.F90corr_varnce_module.F90precipitation_fraction.F90numerical_check.F90pos_definite_module.F90gmres_wrap.F90parameters_tunable.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90stats_clubb_utilities.F90interpolation.F903f1dc0ded1ee5f8b5885043aaf605e2233d04d2e1524171137000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8635 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0864df227743b27686b96e826991a1bf7fd8c18b 2018-04-19 20:52:17 +00003f1dc0ded1ee5f8b5885043aaf605e2233d04d2eRedesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code.editerror_code.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editpdf_closure_module.F90editlapack_wrap.F90editstats_clubb_utilities.F90editfill_holes.F90editparameters_tunable.F90editsurface_varnce_module.F90editcorr_varnce_module.F90editclubb_api_module.F90editdiagnose_correlations_module.F90editinterpolation.F90editsetup_clubb_pdf_params.F90editgrid_class.F90editmono_flux_limiter.F90editnumerical_check.F90editadvance_windm_edsclrm_module.F90editpos_definite_module.F90editstats_type_utilities.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editprecipitation_fraction.F90editgmres_wrap.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90lapack_wrap.F90pdf_closure_module.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90771489f3d5884d9c350e7027e61919193798dda71524267660000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVarious small comment removals and returned some functionality to api interface clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8637 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fac7d1bad2fad4ffdc0012c6bd39c48dcb299c46 2018-04-20 23:41:00 +0000771489f3d5884d9c350e7027e61919193798dda7Various small comment removals and returned some functionality to api interface clubb:ticket:800editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editsurface_varnce_module.F90editadvance_wp2_wp3_module.F90editadvance_windm_edsclrm_module.F90editlapack_wrap.F90numerical_check.F90e825a918920d5b8f6477c6fac06251a72a67f51b1524613862000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA variable found to be less than zero now only gives a warning rather than setting an error code. Some fatal error checks also changed from debug level 2 to 0 clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8640 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0a7c278ab999293009a3e48ffaa63e7c5e73834e 2018-04-24 23:51:02 +0000e825a918920d5b8f6477c6fac06251a72a67f51bA variable found to be less than zero now only gives a warning rather than setting an error code. Some fatal error checks also changed from debug level 2 to 0 clubb:ticket:800editnumerical_check.F90stats_zm_module.F90stats_variables.F90stats_clubb_utilities.F90advance_clubb_core_module.F90cd544c579e1b8dd3405333d72763477ac77d7d571524689472000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is the first part of a two-part change. I am updating plotgen plots so that they contain wpthvp followed by the contribution of cloud water to wpthvp, wp2thvp followed by the contribution of cloud water to wp2thvp, thlpthvp followed by the contribution of cloud water to thlpthvp, and rtpthvp followed by the contribution of cloud water to rtpthvp. In order to plot the contribution of cloud water, a variable named rc_coef is needed. Previously, this had been output on momentum levels so that it could be used to calculate the contribution of cloud water to wpthvp, thlpthvp, and rtpthvp. However, wp2thvp (and wp2rcp) are thermodynamic-level variables, so the contribution of cloud water to wp2thvp couldn't be plotted because plotgen can't handle variables from two different files (zm and zt) in the same equation. In order to plot everything, rc_coef needs to be output on both momentum levels and thermodynamic levels. As a first step, I have renamed the previous rc_coef as rc_coef_zm. The variable rc_coef is calculated based mainly on constants. However, the does contain exner, which is a thermodynamic-level variable. Additionally, it is calculated as part of pdf_closure, which is called on thermodynamic levels. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. The variable name rc_coef has been changed to rc_coef_zm in all GrADS _zm *.ctl files. CLUBB Trac ticket reference: clubb:ticket:824. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8641 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 09c06d8ab9627dd30252246f78f48144a01e524c 2018-04-25 20:51:12 +0000cd544c579e1b8dd3405333d72763477ac77d7d57This is the first part of a two-part change. I am updating plotgen plots soeditstats_zm_module.F90editstats_variables.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90pdf_closure_module.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F90stats_clubb_utilities.F90stats_zt_module.F9059d3974bbca99650fa4ed55e6572ba5664b732e71524715962000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn part 2 of this two part commit, I have added rc_coef to the list of statistical output variables on thermodynamic levels. This will allow plots of the contribution of cloud water to wp2thvp. Since this adds new statistics, this commit is BIT_CHANGING. CLUBB Trac ticket reference:clubb:ticket:824. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8642 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 85cb66d509812298fdc043933fb1c2ee2bf9eadc 2018-04-26 04:12:42 +000059d3974bbca99650fa4ed55e6572ba5664b732e7In part 2 of this two part commit, I have added rc_coef to the list ofeditadvance_clubb_core_module.F90editpdf_closure_module.F90editstats_variables.F90editstats_zm_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90advance_wp2_wp3_module.F90gmres_wrap.F90advance_clubb_core_module.F90numerical_check.F90a53242d5e14b0d2cdc77956a1b7dc25ba0bee2171524785741000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVarious debug checks added/improved. Negative value checks changed back to throw fatal errors. Parameterization check changes to disclude thermodynamic variables at grid level 1 clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8645 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ea6c90ebb091e0edaa253a485bcb0fe74b04e9a2 2018-04-26 23:35:41 +0000a53242d5e14b0d2cdc77956a1b7dc25ba0bee217Various debug checks added/improved. Negative value checks changed back to throw fatal errors. Parameterization check changes to disclude thermodynamic variables at grid level 1 clubb:ticket:800editadvance_wp2_wp3_module.F90editnumerical_check.F90editadvance_clubb_core_module.F90editgmres_wrap.F90numerical_check.F90534a0c72de8873a5009bf671530b47f0d49206f91524870541000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCheck negative no longer assumes array sizes are gr%nz, this should fix the SAM-CLUBB-SILHS error in the nightly tests clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8648 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c5367d31f8d14bf63fe8db9d739ce3556d199437 2018-04-27 23:09:01 +0000534a0c72de8873a5009bf671530b47f0d49206f9Check negative no longer assumes array sizes are gr%nz, this should fix the SAM-CLUBB-SILHS error in the nightly tests clubb:ticket:800editnumerical_check.F90numerical_check.F905c4a849bdb5f53fcf9dfc89fd033336c1efbfc8d1525220380000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduI'm pretty sure this will fix the check negative issues this time, fortran has some lacking features when it comes to arrays clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8650 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e6bfd050584076696a51885cd3617afab1240f2 2018-05-02 00:19:40 +00005c4a849bdb5f53fcf9dfc89fd033336c1efbfc8dI'm pretty sure this will fix the check negative issues this time, fortran has some lacking features when it comes to arrays clubb:ticket:800editnumerical_check.F90advance_clubb_core_module.F905594fe9e9fbe5678de31813cee26b5cb9335667e1525220543000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged calls to parameterization check to work with the new check negative implementation clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8651 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ecec6a8815e819b2b51add31db0d3f4995a02a81 2018-05-02 00:22:23 +00005594fe9e9fbe5678de31813cee26b5cb9335667eChanged calls to parameterization check to work with the new check negative implementation clubb:ticket:800editadvance_clubb_core_module.F90advance_clubb_core_module.F900838560e573a27fecf5357fc654ad1e0d3097e6e1525220627000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.edu git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8652 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b5b67470d5464025531cc981f1b4cd8906fc5450 2018-05-02 00:23:47 +00000838560e573a27fecf5357fc654ad1e0d3097e6eeditadvance_clubb_core_module.F90advance_clubb_core_module.F90710b86bb2771a3ea99f8f49d70eee9f0d7a9fa981525288786000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved rtm(5) = -1 line, it was a test accidentally left in and caused many nightly tests to fail clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8653 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bb388ad7e3f6068c8a15c50cb53ff038dd98d1f 2018-05-02 19:19:46 +0000710b86bb2771a3ea99f8f49d70eee9f0d7a9fa98Removed rtm(5) = -1 line, it was a test accidentally left in and caused many nightly tests to fail clubb:ticket:800editadvance_clubb_core_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90numerical_check.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90surface_varnce_module.F90mono_flux_limiter.F907819819232585aa60a22328a59ee1678e1a692f21525383794000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged error checking if statements to check for equality to clubb_fatal_error rather than inequality to clubb_no_error, makes them more readable clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8656 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e7594b96ec54ad94de28f8ba06d5508ffcbbfd66 2018-05-03 21:43:14 +00007819819232585aa60a22328a59ee1678e1a692f2Changed error checking if statements to check for equality to clubb_fatal_error rather than inequality to clubb_no_error, makes them more readable clubb:ticket:800editadvance_windm_edsclrm_module.F90editmixing_length.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editsurface_varnce_module.F90editadvance_clubb_core_module.F90editnumerical_check.F90editpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90lapack_wrap.F9013831ab3cc6c757038004f5404bb16b6e601d99f1525386155000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed unused variable warnings related to error code changes git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8657 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 178198f65006fe50b1b5f18b7178987d2d1a3c0b 2018-05-03 22:22:35 +000013831ab3cc6c757038004f5404bb16b6e601d99fFixed unused variable warnings related to error code changeseditlapack_wrap.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90pdf_closure_module.F90df6f4296f21568086b513f923063d7df9a3aced31525476958000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am generalizing the wprcp, wp2rcp, rtprcp, and thlprcp equations to account for the PDF component correlation of w and rt and the PDF component correlation of w and theta-l. In regards to the PDF transformation, this accounts for the PDF component correlation of w and chi and the PDF component correlation of w and eta. For the default ADG1 code, the plotgen results overlap for all cases except for the most sensitive ones -- ARM 97, TWP-ICE, and MC3E. For ADG1, the calculations are mathematically the same, but numerical roundoff errors account for any changes, making this commit BIT_CHANGING. CLUBB Trac ticket references: clubb:ticket:777 and clubb:ticket:806. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8659 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a7259659c0a879df9d5e32bd2d3087328bb0304a 2018-05-04 23:35:58 +0000df6f4296f21568086b513f923063d7df9a3aced3I am generalizing the wprcp, wp2rcp, rtprcp, and thlprcp equations to accounteditpdf_closure_module.F90advance_clubb_core_module.F90error_code.F908da2c418b38a9dcfed11d90ee4d963a6c7c727261525715833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded error header functionality. Using the err_header character array from error_code in a write statment will print out either the thread number or process ID along with CLUBB -- ERROR: . This is mainly to keep track of error messages is multithreaded scenarios clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8660 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1f3a5d4af18e3ebf53f8b821e413b69d5f1f3381 2018-05-07 17:57:13 +00008da2c418b38a9dcfed11d90ee4d963a6c7c72726Added error header functionality. Using the err_header character array from error_code in a write statment will print out either the thread number or process ID along with CLUBB -- ERROR: . This is mainly to keep track of error messages is multithreaded scenarios clubb:ticket:800editadvance_clubb_core_module.F90editerror_code.F90pdf_closure_module.F900ac6d77e9e485ba1860339e34ee86c2dcabd51371525809195000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn r8659, I accidentally overwrote some code. This commit restores the prior version. CLUBB Trac ticket reference: clubb:ticket:800. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8661 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: a67cb39ea413c949b2a3432fd5a4d67517d58c0e 2018-05-08 19:53:15 +00000ac6d77e9e485ba1860339e34ee86c2dcabd5137In r8659, I accidentally overwrote some code. This commit restores the prioreditpdf_closure_module.F90pdf_closure_module.F907d6bf061c7354f5a1bf4d48df53aef4d63158ef41525809252000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSigh git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8662 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5e94a485df2a451e08b95d4e83532855d4941de1 2018-05-08 19:54:12 +00007d6bf061c7354f5a1bf4d48df53aef4d63158ef4Sigheditpdf_closure_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90surface_varnce_module.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F900a5bae799b090651a0fbaec135c784eb1e43af791525983695000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded clubb debug level checks to error checking statements clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8664 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: d913e4e936096a1222f3571a31802d39f8029f0b 2018-05-10 20:21:35 +00000a5bae799b090651a0fbaec135c784eb1e43af79Added clubb debug level checks to error checking statements clubb:ticket:800editsurface_varnce_module.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editadvance_clubb_core_module.F90editmixing_length.F90editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editmono_flux_limiter.F90precipitation_fraction.F90advance_clubb_core_module.F90clubb_api_module.F90output_netcdf.F90csr_matrix_module.F90pdf_parameter_module.F90stats_clubb_utilities.F90grid_class.F90setup_clubb_pdf_params.F908dd2efb7b881a9decacf6ab60b8cd4595fb795d61526086676000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged many stop commands to return commands and added more err_code checks clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8665 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4e6f274e0940c80fd0fdac7c7887f8b6138beeb2 2018-05-12 00:57:56 +00008dd2efb7b881a9decacf6ab60b8cd4595fb795d6Changed many stop commands to return commands and added more err_code checks clubb:ticket:800editpdf_parameter_module.F90editprecipitation_fraction.F90editoutput_netcdf.F90editcsr_matrix_module.F90editclubb_api_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editgrid_class.F90editsetup_clubb_pdf_params.F90clubb_api_module.F90931223883ea8311dd6b46251763db82296b8f6171526427162000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted api changes that broke SAM and WRF git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8669 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 5cb5ad6b721ddb72d4c4261a5c538f769b31f4c8 2018-05-15 23:32:42 +0000931223883ea8311dd6b46251763db82296b8f617Reverted api changes that broke SAM and WRFeditclubb_api_module.F90new_pdf.F90new_pdf_main.F909fb1e0ea6977aab5c009b67ff7f2d6a3542974791526933960000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the semi-implicit formulation of wprtpthlp, which is the turbulent advection term in the rtpthlp predictive equation. This form is specific to the new PDF. CLUBB Trac ticket reference: clubb:ticket:777. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8674 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3ee9e6dc10b2a96e93f73731abc0e689e4f5285d 2018-05-21 20:19:20 +00009fb1e0ea6977aab5c009b67ff7f2d6a354297479I am adding the semi-implicit formulation of wprtpthlp, which is the turbulenteditnew_pdf.F90editnew_pdf_main.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F90stats_zt_module.F903edb1f2cd144c0c6f10c9db65c8e899beafaff201527015165000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding output statistics for the implicit and semi-implicit coefficients and terms that are used for wp4, wprtp2, wpthlp2, wp2rtp, wp2thlp, and wprtpthlp in the CLUBB predictive equation set. When the ADG1 PDF is used or when turbulent advection is handled explicitly, a value of 0 is simply output for these fields. However, new fields are now added to the *_zt and *_zm statistical output files, making this change BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8678 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: aa2d2842b3845f5fa9ee66237db4e1fc18d65cc1 2018-05-22 18:52:45 +00003edb1f2cd144c0c6f10c9db65c8e899beafaff20I am adding output statistics for the implicit and semi-implicit coefficientseditadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90editstats_variables.F90editstats_zm_module.F90new_pdf.F90new_pdf_main.F90a9341697c80d2668d3079c9ae142e1a2ebd70b431527015385000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI corrected the units on a couple of implicit coefficients. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8679 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cf7e5004ede5dd3c7bdcd925f3cb200af658b317 2018-05-22 18:56:25 +0000a9341697c80d2668d3079c9ae142e1a2ebd70b43I corrected the units on a couple of implicit coefficients.editnew_pdf.F90editnew_pdf_main.F90advance_xm_wpxp_module.F90ce15cc8f9aae4e22a3bddf4992f02f34d723cbd11527204952000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8685 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ec7f561c61f350ab4ec77e9c5953584ae8c3a2ad 2018-05-24 23:35:52 +0000ce15cc8f9aae4e22a3bddf4992f02f34d723cbd1I fixed a bug.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90interpolation.F90advance_xm_wpxp_module.F90lapack_wrap.F9082b8e1b410e1f524cb976f0261acb1b6e199af761527210440000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved failure_test cases from input/case_setups, they neither work properly nor are needed anymore. Added test_fatal_error_handling.bash script which tests for various errors defined by an identifier in the code, more description available in the bash file. Also added more descriptive error output to some parts of code. This change focuses only on output and comments and is BIT IDENTICAL clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8688 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 91ac88eb9164cd49ca80fc713029c1bd4b6ff40e 2018-05-25 01:07:20 +000082b8e1b410e1f524cb976f0261acb1b6e199af76Removed failure_test cases from input/case_setups, they neither work properly nor are needed anymore. Added test_fatal_error_handling.bash script which tests for various errors defined by an identifier in the code, more description available in the bash file. Also added more descriptive error output to some parts of code. This change focuses only on output and comments and is BIT IDENTICAL clubb:ticket:800editadvance_wp2_wp3_module.F90editlapack_wrap.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editinterpolation.F90advance_xm_wpxp_module.F905a5297f9ab35944a45cf8b8e9391c0a861b3905f1527294838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved reference to run_type 'failure_test' as it no longer exists. Added more description to fatal errors produced by calls to xm_wpxp_solve. This change is BIT IDENTICAL clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8690 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 23cc4aa2bc4aa6c27d508bad874a6818b4e9f158 2018-05-26 00:33:58 +00005a5297f9ab35944a45cf8b8e9391c0a861b3905fRemoved reference to run_type 'failure_test' as it no longer exists. Added more description to fatal errors produced by calls to xm_wpxp_solve. This change is BIT IDENTICAL clubb:ticket:800editadvance_xm_wpxp_module.F90stats_clubb_utilities.F909ceaa37d3cc78dbf56569a7d4a08768352d0b01e1527790022000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing a bug with the CLUBB tuner. Variables that were allocated at the start of each CLUBB run were not being deallocated, causing the tuner to crash. I also made some of the code a little bit more easily readable. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8695 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bce461a95c155074c37ddaf67a359722684b032 2018-05-31 18:07:02 +00009ceaa37d3cc78dbf56569a7d4a08768352d0b01eI am fixing a bug with the CLUBB tuner. Variables that were allocated at theeditstats_clubb_utilities.F90advance_wp2_wp3_module.F90Skx_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90numerical_check.F907a2fad444aefaa42626b4f4f1ba874ad6a9ac9341527792428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCompleted the list of variables that get reported from errors within advance_wp2_wp3 and advance_xm_wpxp. Also added a check that outputs an error message when T_in_K is less than 200K in the lowest 10 grid levels, this check is done in subroutine parameterization_check. clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8697 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 53e78bde17cf1e7916cffca0c52828aea6a78804 2018-05-31 18:47:08 +00007a2fad444aefaa42626b4f4f1ba874ad6a9ac934Completed the list of variables that get reported from errors within advance_wp2_wp3 and advance_xm_wpxp. Also added a check that outputs an error message when T_in_K is less than 200K in the lowest 10 grid levels, this check is done in subroutine parameterization_check. clubb:ticket:800editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editSkx_module.F90editnumerical_check.F90fill_holes.F90advance_clubb_core_module.F90numerical_check.F90e5907f835fe697746c161b04ef63ddf67c834a4f1528225011000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade all debug levels produce the same output, see clubb:ticket:823 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8700 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e0155881872223e0415c76a109ea31b51a221779 2018-06-05 18:56:51 +0000e5907f835fe697746c161b04ef63ddf67c834a4fMade all debug levels produce the same output, see clubb:ticket:823editnumerical_check.F90editfill_holes.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90pdf_parameter_module.F90new_pdf_main.F90ac9622bf0cc09cc316434886e129bb7314d08a111528401879000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am moving type variable implicit_coefs_terms from new_pdf_main.F90 to pdf_parameter_module.F90. The goal is to use this type variable for all PDF types, not just for the new PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8702 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e2a336674b0425021f90e328156effd55497e67b 2018-06-07 20:04:39 +0000ac9622bf0cc09cc316434886e129bb7314d08a11I am moving type variable implicit_coefs_terms from new_pdf_main.F90 toeditpdf_closure_module.F90editpdf_parameter_module.F90editadvance_clubb_core_module.F90editnew_pdf_main.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90parameters_tunable.F907d18837476666806239c9825cf4b67e6f9a23c181529024997000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8705 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9cedfb7d28f1ed37f746348dbb9082075ebe26ce 2018-06-15 01:09:57 +00007d18837476666806239c9825cf4b67e6f9a23c18Modified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802editparameters_tunable.F90parameters_tunable.F90eabe48e0df1cdb0f1e235c23a9078a4afac1d17e1529121760000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8706 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 02a68858d0eb8c5ae738be483dd9ff80835de531 2018-06-16 04:02:40 +0000eabe48e0df1cdb0f1e235c23a9078a4afac1d17eAdded checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802editparameters_tunable.F90numerical_check.F90f8e787b9279acee257f8f5239f4d59565a1a31b01529122288000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the thlm out of bounds error on clubb:ticket:828 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8707 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b66209934392d16efc4dc1e3787cb8e0301f1dd1 2018-06-16 04:11:28 +0000f8e787b9279acee257f8f5239f4d59565a1a31b0This should fix the thlm out of bounds error on clubb:ticket:828editnumerical_check.F90advance_wp2_wp3_module.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_pdf_main.F90advance_xm_wpxp_module.F9059dd7cde986a3b07374d847937800451514f23781529347561000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the name of type variable new_pdf_implct_coefs_terms to pdf_implicit_coefs_terms in order to help generalize this variable for use with any type of PDF. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8708 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 06cc2f631557b8f9b584c2260843ca3aef8d1a61 2018-06-18 18:46:01 +000059dd7cde986a3b07374d847937800451514f2378I changed the name of type variable new_pdf_implct_coefs_terms toeditpdf_closure_module.F90editadvance_xp2_xpyp_module.F90editnew_pdf_main.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90numerical_check.F903a824d458cbfb497e1b920ed3f9b1128924210f61529359496000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8709 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f413987ba6cb3288915c9ee945dbb23ca7ca13e4 2018-06-18 22:04:56 +00003a824d458cbfb497e1b920ed3f9b1128924210f6Changed T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828editnumerical_check.F90advance_xp2_xpyp_module.F90b1accae6cdf52d3613804d3e868dd2f2259ae9d81529937463000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a flag option to clip the (large, negative) effects of microphysics on rtp2 and thlp2. Right now, this flag is turned off by default, so the results remain the same. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8712 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 56dcb3ae49ea059027553d6236b35374df61ab73 2018-06-25 14:37:43 +0000b1accae6cdf52d3613804d3e868dd2f2259ae9d8I added a flag option to clip the (large, negative) effects of microphysics oneditadvance_xp2_xpyp_module.F90clip_explicit.F90advance_xp2_xpyp_module.F90313ad512a4c8fdc9f1e171ebb05a4ecf01b749d41529947245000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a flag option to calculate the minimum threshold for xp2 (rtp2 and thlp2) based on maintaining an overall correlation of w and x that falls between -max_mag_correlation and max_mag_correlation. Right now, this flag is turned off by default, so the results remain the same. CLUBB Trac ticket reference: clubb:ticket:822. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8713 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 827263c713117eec5b4f415f3fab91e7aacd751e 2018-06-25 17:20:45 +0000313ad512a4c8fdc9f1e171ebb05a4ecf01b749d4I added a flag option to calculate the minimum threshold for xp2 (rtp2 andeditclip_explicit.F90editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90clip_explicit.F90constants_clubb.F90f41025c81a0ff30e00667a02e0060a989d745acc1530036019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a special max magnitude correlation for fluxes wprtp and wpthlp. This variable is called max_mag_correlation_flux and it is set to 0.99 by default (the same value as max_mag_correlation) so results remain the same for now. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8714 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 820d0ca1cfb24d472ea0df14d9773a300f7838ca 2018-06-26 18:00:19 +0000f41025c81a0ff30e00667a02e0060a989d745accI added a special max magnitude correlation for fluxes wprtp and wpthlp. Thiseditconstants_clubb.F90editadvance_xp2_xpyp_module.F90editclip_explicit.F90parameters_tunable.F9075959a494104447dc36320e08168100f868558dc1530242220000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. This commit is bit identical execpt for tuning results, see clubb:ticket:802 for a bunch more information git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8716 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cb3732ec186d149883164709deaead448d995038 2018-06-29 03:17:00 +000075959a494104447dc36320e08168100f868558dcMade better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. This commit is bit identical execpt for tuning results, see clubb:ticket:802 for a bunch more informationeditparameters_tunable.F90advance_wp2_wp3_module.F90parameters_tunable.F90constants_clubb.F90e3d58ba763369692018fa4a1140ad436623b48401530559519000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit sets C8b=0.02, changes the non-linear damping on wp3 from Skw^4 to Skw^2, sets C11b=C11, and relaxes Skw_max_mag to 10. These changes are designed to reduce the clipping on wp3 (although the clipping is not eliminated), and to allow greater skewness in cumulus cases without altering the stratocumulus cases. This offers opportunities to increase the contrast between shallow cumulus and stratocumulus in global simulations. This commit is BIT_CHANGING. For clubb:ticket:817. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8719 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c3b9f880a412da4e3b527cba7a587fdce2c14e3e 2018-07-02 19:25:19 +0000e3d58ba763369692018fa4a1140ad436623b4840This commit sets C8b=0.02, changes the non-linear damping on wp3editconstants_clubb.F90editadvance_wp2_wp3_module.F90editparameters_tunable.F90advance_wp2_wp3_module.F90parameter_indices.F90model_flags.F90clip_explicit.F90constants_clubb.F90Skx_module.F90parameters_tunable.F90parameters_model.F9010a9678f87e1c19f9d20482b6d9e8b9bb86057fa1530836881000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded a flag and moved Skw_max_mag from constants to parameters, this allows the changes made in commit clubb:r8719 to be reverted by modifying the configuration flags and the tunable parameters list, see clubb:ticket:829 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8722 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4a4f3e30a724310cb2342bcd8f99792e63e7922c 2018-07-06 00:28:01 +000010a9678f87e1c19f9d20482b6d9e8b9bb86057faAdded a flag and moved Skw_max_mag from constants to parameters, this allows the changes made in commit clubb:r8719 to be reverted by modifying the configuration flags and the tunable parameters list, see clubb:ticket:829editclip_explicit.F90editSkx_module.F90editconstants_clubb.F90editparameter_indices.F90editparameters_tunable.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editparameters_model.F90turbulent_adv_pdf.F90cee383b89783f8dba35ea28b766ec787f08691d41530917037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a general purpose function for the turbulent advection of CLUBB's predictive variances and covariances. This is for the momentum-level predictive fields that handle turbulent advection by integrating over the PDF. Regardless of PDF type, all of these turbulent advection terms can be written in the following form: d<x'y'>/dt = - (1/rho_ds) * d( rho_ds * <w'x'y'> ) / dz; where <w'x'y'> = coef_wpxpyp_implicit * <x'y'> + term_wpxpyp_explicit. This allows for one set of turbulent advection functions that can be reused for multiple variables, for any PDF type, and even for the explicit turbulent advection option. This allows for a much simpler flow of coding, and also has the perk of expanding the "upwind" turbulent advection option to other PDF types (besides ADG1), without adding a whole bunch of specialty functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8724 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: dd55be7bcda2c95e11dc19ca4b00a5ed5b07e013 2018-07-06 22:43:57 +0000cee383b89783f8dba35ea28b766ec787f08691d4I am adding a general purpose function for the turbulent advection of CLUBB'saddturbulent_adv_pdf.F90turbulent_adv_pdf.F908229ba9d74d876bcc0698e1ac0e67d554ccee4481530917910000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added/changed a couple comments for the rhs portion of the generalized turbulent advection functions. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8725 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 205652eccb7a8134e56139076588faf4264b0496 2018-07-06 22:58:30 +00008229ba9d74d876bcc0698e1ac0e67d554ccee448I added/changed a couple comments for the rhs portion of the generalizededitturbulent_adv_pdf.F90turbulent_adv_pdf.F90203d7900ea874e5b24af54b97f8d130f72c9ef251531162423000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe turbulent advection file that handles turbulent advection for predictive variances and covariances (where turbulent advection is handled by integrating over the PDF) is now set! Functions that handled the LHS (implicit component) and RHS (explicit component) of the turbulent advection term are ready to go! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8726 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3894e413ee48034e5a8a75a0f6e49d66d9f9cccf 2018-07-09 18:53:43 +0000203d7900ea874e5b24af54b97f8d130f72c9ef25The turbulent advection file that handles turbulent advection for predictiveeditturbulent_adv_pdf.F90turbulent_adv_pdf.F9074d40e391a81f2ec1ca1d71ac5f93ccbff5278411531262935000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, that calculates the turbulent velocity for a predictive variance or covariance for use with the "upwind" turbulent advection option. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8728 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0fa11b05c00ca08cd1373f15bc8d36f908a2556e 2018-07-10 22:48:55 +000074d40e391a81f2ec1ca1d71ac5f93ccbff527841I added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, thateditturbulent_adv_pdf.F90turbulent_adv_pdf.F9094d2e20139114e5f5009ea286ceccc775534f51d1531263209000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhoops, I forgot to make wpxpyp_zm and xpyp intent (in). git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8729 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 00b12f393cc3fd434006faebdbcbf052f1c7d792 2018-07-10 22:53:29 +000094d2e20139114e5f5009ea286ceccc775534f51dWhoops, I forgot to make wpxpyp_zm and xpyp intent (in).editturbulent_adv_pdf.F90clubb_api_module.F90array_index.F90corr_varnce_module.F9067dcf4b14d66f7d4c55095c2d6fd2e63575488511531451904000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8730 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e9089dce7bcad2b4b235a03d128216f633136f0f 2018-07-13 03:18:24 +000067dcf4b14d66f7d4c55095c2d6fd2e6357548851Added functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830editclubb_api_module.F90editcorr_varnce_module.F90editarray_index.F90advance_xp2_xpyp_module.F906fcdeeeda0f1708e9af2d38d3a47fbc7598b06ad1531457694000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code that advances predictive variances and covariances in advance_xp2_xpyp_module.F90 to use one set of turbulent advection functions for all turbulent advection options (explicit or implicit/semi-implicit based on PDF type, as well as centered or "upwind" discretization"). Along the way, I discovered that the current ADG1 implementation, which is supposed to be using "upwind" discretization, is only using "upwind" discretization for the implicit component of the turbulent advection term, while using centered discretization for the explicit (RHS) component of the turbulent advection term. An "upwind" discretization for the explicit component was never added to the code. I assumed this was an oversight, and an "upwind" discretization for the explicit component of the turbulent advection term was added as part of the new code for this project (in a prior commit). Both implicit and explicit components now use either centered discretization or "upwind" discretization consistently. Owing to the RHS discretization correct, as well owing to a different order of calculations, this commit is BIT_CHANGING. However, plots of all cases show that the previous revision and the current revision overlap for most cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8731 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fdba5b894298fe351486792a92a521586dc1d9b7 2018-07-13 04:54:54 +00006fcdeeeda0f1708e9af2d38d3a47fbc7598b06adI am updating the code that advances predictive variances and covariances ineditadvance_xp2_xpyp_module.F90clubb_api_module.F90fb8065e129f7e8ea2ba43d10446efafc265554941531767879000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8733 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fbc3b6719ef6a8a5d8f4f728c77ca6aeac8886d4 2018-07-16 19:04:39 +0000fb8065e129f7e8ea2ba43d10446efafc26555494Renamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830editclubb_api_module.F90advance_xm_wpxp_module.F900249e99c6cd889bb8537572f8e1d83fc21a915e51531947642000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code that advances predictive scalar fluxes (<w'x'>) in advance_xm_wpxp_module.F90 to use one set of turbulent advection functions for all turbulent advection options (explicit or implicit/semi-implicit based on PDF type, as well as centered or "upwind" discretization). For the default ADG1 PDF, the calculations are mathematically the same. However, they occur in a different order in the new code. This makes this revision BIT_CHANGING. However, plots of all cases show that the previous revision and the current revision overlap for most cases. Only the most sensitive cases show differences on the plots. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8735 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ef271ff2d4a0fb4b7ca7fdfbaba3a3d2f6cac016 2018-07-18 21:00:42 +00000249e99c6cd889bb8537572f8e1d83fc21a915e5I am updating the code that advances predictive scalar fluxes (<w'x'>) ineditadvance_xm_wpxp_module.F90fill_holes.F9084eb73b8d08f9bc2b3d2d3941bbc7c197b6710931531955549000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAs a first step toward having code that can clip mean values of hydrometeor concentrations or SILHS sample point values of hydrometeor concentrations, I have made a new subroutine out of the code that clips hydrometeor concentrations. It is not yet interfaced and I haven't deleted the old code yet. CLUBB Trac ticket reference: clubb:ticket:833. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8736 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 7f535b468ffcb92bbded378a263a9d3ffa2bd736 2018-07-18 23:12:29 +000084eb73b8d08f9bc2b3d2d3941bbc7c197b671093As a first step toward having code that can clip mean values of hydrometeoreditfill_holes.F90clubb_api_module.F900a518f3553cb13ad37bf5410f6d638d2ea79f2db1531963960000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduinit_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8737 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 28016716b08941d7e9ed1b1055b40300eb842b9f 2018-07-19 01:32:40 +00000a518f3553cb13ad37bf5410f6d638d2ea79f2dbinit_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562editclubb_api_module.F90fill_holes.F9089000415c991e9c188c91e11fa80184e507d965f1532030333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have now interfaced the subroutine that I made out of the code that clips hydrometeor concentrations with the rest of CLUBB, in place of the old code. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:833. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8738 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 1935918c4825f5c4b7b5bed91355b19954edd555 2018-07-19 19:58:53 +000089000415c991e9c188c91e11fa80184e507d965fI have now interfaced the subroutine that I made out of the code that clipseditfill_holes.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90e31aae7b02811fb9034da4e9e0f97f29603e2a2d1532495361000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added new code that clips the overall correlation of w and rt or the overall correlation of w and theta-l by increasing wp2 (after advancing wp2) when one of the aforementioned correlations is outside of the range that they're supposed to be in. This code is controlled by a flag, which is turned off by default. The results in GrADS files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:835. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8740 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6fc699c3a4be0c178ba1e7e05b3571bf218f5367 2018-07-25 05:09:21 +0000e31aae7b02811fb9034da4e9e0f97f29603e2a2dI added new code that clips the overall correlation of w and rt or the overalleditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90stats_variables.F90advance_xp2_xpyp_module.F90stats_zt_module.F90d4e0f942e2c4fea13259aea59151e689111d4eb81532554503000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which are part of the semi-implicit turbulent advection term for rtp2 and thlp2, respectively. This is used for ADG1 and for the explicit turbulent advection option. Since new stats are being added, this revision is BIT_CHANGING. However, this is only for *_zt stats files. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8741 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8c7a58900f887917c29446fb79f7af1df9ac777 2018-07-25 21:35:03 +0000d4e0f942e2c4fea13259aea59151e689111d4eb8I added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which areeditstats_zt_module.F90editstats_variables.F90editadvance_xp2_xpyp_module.F90advance_windm_edsclrm_module.F90clubb_api_module.F909216aa9dddfd6115909e238aa44fc3b70ced37731532572197000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMade clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8742 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 41e97fd33df9189dcbd8401090b1b6fb9cbfd198 2018-07-26 02:29:57 +00009216aa9dddfd6115909e238aa44fc3b70ced3773Made clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800editadvance_windm_edsclrm_module.F90editclubb_api_module.F90advance_windm_edsclrm_module.F90dd55be4737a50a6033e606883382a7085f9b1c261532572383000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8743 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e89c92fd0f27d2c264c4bdd7cfd54d564d639ceb 2018-07-26 02:33:03 +0000dd55be4737a50a6033e606883382a7085f9b1c26Reverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800editadvance_windm_edsclrm_module.F90clubb_api_module.F90095ae79bf0437ae71cade1390af663fa0ee5f1b61532626737000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed nightly tests git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8744 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: ce40ceb7330f98de907410203e620c04fac4f7e9 2018-07-26 17:38:57 +0000095ae79bf0437ae71cade1390af663fa0ee5f1b6Fixed nightly testseditclubb_api_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F905a2c7c73d6490d53ab9a3c7930c37c52d52904e81532726843000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code to allow C2 to be adjusted by multiplying by the greater of cloud fraction or a small constant. This code is turned off by default. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Trac ticket reference: clubb:ticket:836. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8746 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 0b346735398eebf6d3aa78a2aade0277168bb964 2018-07-27 21:27:23 +00005a2c7c73d6490d53ab9a3c7930c37c52d52904e8I have added code to allow C2 to be adjusted by multiplying by the greater ofeditadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90model_flags.F90advance_xp2_xpyp_module.F906c918c0f09f47468a92d2893276ae667b0fa5c631532820384000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI moved the location of the declaration and setting of new model flags to model_flags.F90 so that they could be read in through the configurable model flags namelist. CLUBB Trac ticket references: clubb:ticket:835 and clubb:ticket:836. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8747 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c7148d45f984e40bf473959504068e851c565edc 2018-07-28 23:26:24 +00006c918c0f09f47468a92d2893276ae667b0fa5c63I moved the location of the declaration and setting of new model flags toeditadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editmodel_flags.F90advance_windm_edsclrm_module.F90diffusion.F9041c69abbeda07301f40a459338d56333b541b8b61533077694000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8751 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 560390daf8556a0a5f94f8887d4e8fa470dcb8a7 2018-07-31 22:54:54 +000041c69abbeda07301f40a459338d56333b541b8b6Improved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834editdiffusion.F90editadvance_windm_edsclrm_module.F90advance_windm_edsclrm_module.F90diffusion.F9047cc48c6153c8ac4d46152a54b0b7ab46c6fd8371533169930000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8757 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 8c69c81acdc9cc0842ffd162a9e934d586b00c5e 2018-08-02 00:32:10 +000047cc48c6153c8ac4d46152a54b0b7ab46c6fd837Fixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834editdiffusion.F90editadvance_windm_edsclrm_module.F90advance_windm_edsclrm_module.F901d391de95c4b312041456ecc13b165a54f2d14021533236343000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduActually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8758 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: be4e4b3491e9d5cb60f878d34533b97259ae75d5 2018-08-02 18:59:03 +00001d391de95c4b312041456ecc13b165a54f2d1402Actually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834editadvance_windm_edsclrm_module.F90advance_xp2_xpyp_module.F90diffusion.F90stats_clubb_utilities.F90turbulent_adv_pdf.F90advance_windm_edsclrm_module.F90mean_adv.F902186e361695511d0e57bd728903ffddb7a7ada181533673761000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOptimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8761 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: e04c8b4d12c19f275a7ffb2c48ca2b0cd1a32539 2018-08-07 20:29:21 +00002186e361695511d0e57bd728903ffddb7a7ada18Optimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834editdiffusion.F90editstats_clubb_utilities.F90editturbulent_adv_pdf.F90editmean_adv.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90stats_clubb_utilities.F902527ef4247d172eeea40ec4e8502a62a3ea67e051533673810000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverted stats_clubb_utilities, accidental commit git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8762 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1854eb8cedabd6dc0776b86313ed70f8c5c5ee8 2018-08-07 20:30:10 +00002527ef4247d172eeea40ec4e8502a62a3ea67e05Reverted stats_clubb_utilities, accidental commiteditstats_clubb_utilities.F90advance_windm_edsclrm_module.F906e57d219689d582e8d25d0213163984dd64d28c91533777712000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8763 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 989d179f909385c13ff929975318299b4e86f409 2018-08-09 01:21:52 +00006e57d219689d582e8d25d0213163984dd64d28c9This should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837editadvance_windm_edsclrm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F90stats_zm_module.F90parameters_tunable.F90stats_variables.F90surface_varnce_module.F90advance_helper_module.F9029ebdfcb8332dbe0cc4c3bc884b831c5752dc3671533830141000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.edu This commit adds splatting terms to the wp2, up2, and vp2 equations. A tuning parameter, C_wp2_splat, has been added, as well as budget term stats. However, C_wp2_splat still needs to be added to the error.in files. In addition, no splatting effect has been added to the wp3 equation yet. This commit is BIT_CHANGING, but only because new budget terms have been added to the zm stats. The results are identical because the value of the tuning parameter C_wp2_splat has been set to zero. I spot checked the output from arm_zt.nc, and it was identical to the prior revision except for the inclusion of C_wp2_splat in the new .nc file. Also, the plots looked identical for the priority cases, even the sensitive cases like arm_97. For clubb:ticket:832. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8765 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: f8b5de7f54101ada0a8d95a5d5dc55760030b464 2018-08-09 15:55:41 +000029ebdfcb8332dbe0cc4c3bc884b831c5752dc367editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editstats_zm_module.F90editparameters_tunable.F90editclubb_api_module.F90editparameter_indices.F90editstats_variables.F90editsurface_varnce_module.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90mean_adv.F90934865a509b3b821c1fd3ba8519456bcc069fbb81533947805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImpoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8767 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 090ab653a2e793683920a8a0efc7b22cb5a7ed82 2018-08-11 00:36:45 +0000934865a509b3b821c1fd3ba8519456bcc069fbb8Impoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834editmean_adv.F90editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F90parameters_tunable.F90stats_variables.F90advance_clubb_core_module.F90advance_helper_module.F90stats_zt_module.F9039398fe6f19281b12245d9ff9bcd16468f60d44d1534028076000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit implements the effects of splatting on wp3. Splatting diminishes wp3 by reducing both vertical motions and skewness near inversions and the ground surface. This commit adds a new term to the wp3 budget, wp3_splat, and hence is BIT_CHANGING. However, otherwise, the results appear to be bit-for-bit identical; at least, they are for the arm_zt.nc file. For clubb:ticket:832. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8769 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9e1536d8bc22fe532acc78067afa1e35b1c3324f 2018-08-11 22:54:36 +000039398fe6f19281b12245d9ff9bcd16468f60d44dThis commit implements the effects of splatting on wp3.editadvance_helper_module.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90editparameters_tunable.F90editstats_variables.F90editadvance_clubb_core_module.F90model_flags.F90advance_windm_edsclrm_module.F9016b36fb205bdfc55659c1204a4be16b4258c8dc81534219811000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the first step toward committing code that allows for the option of advancing um/upwp and vm/vpwp along with xm/wpxp variables. I have added the l_predict_upwp_vpwp flag and I have modified subroutine advance_windm_edsclrm appropriately. Results in GrADS output files from this revision are an exact match to results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8771 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: c1cb950ae77d865b0e96535a06c49a4c67b95aff 2018-08-14 04:10:11 +000016b36fb205bdfc55659c1204a4be16b4258c8dc8I am making the first step toward committing code that allows for the optioneditmodel_flags.F90editadvance_windm_edsclrm_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90c7c4a8728f3beb30a09a265911580c71a5b3303b1534222811000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to allow the option of predicting upwp and vpwp by using the advance_xm_wpxp code to predict um and upwp, as well as vm and vpwp, alongside the advancement of other xm and wpxp variables. The option to do this is controlled by the l_predict_upwp_vpwp flag. When the flag is turned off (which it currently is), the traditional code in advance_windm_edsclrm is used for um, vm, upwp, and vpwp. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8772 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 6c5845b594ec8f0221ec8b931f624d3a64efe030 2018-08-14 05:00:11 +0000c7c4a8728f3beb30a09a265911580c71a5b3303bI added code to allow the option of predicting upwp and vpwp by using theeditadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90new_tsdadg_pdf.F90pdf_utilities.F90advance_clubb_core_module.F90LY93_pdf.F90numerical_check.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90calc_roots.F90new_pdf.F90new_pdf_main.F905f3450b73aa08a477fab3fe1c06e3b2eedcfdf181534270528000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI took the liberty of upgrading CLUBB's PDF closure and related code to a vector array rather than a loop over PDF closure over all vertical levels. The majority of the changes were simply promoting single-value variables to vector array variables and changing vertical-level-dependent "if" statements to "where" statements. Otherwise, var_1 = C * var_2 * var_3 works for both single-value variables and vector array variables. The results in GrADS output files from the current revision were an exact match to the results in GRADS output files from the previous revision for all cases when optimization (for gfortran) was set to -O0 for both the previous revision and the current revision. Likewise, the results in GrADS output files from the current revision were an exact match to the results in GrADS output files from the previous revision for all cases when optimization (for gfortran) was set to -O1 for both the previous revision and the current revision. However, when optimization (for gfortran) was set to the default value of -O2, the results are not an exact match between the previous and current versions. Some property of vectorizing the code must cause differences when optimization is set higher (-O2 or -O3). This makes this revision BIT_CHANGING. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8773 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 34d66b14aafa808a28970d51c0f54d43e8654f1f 2018-08-14 18:15:28 +00005f3450b73aa08a477fab3fe1c06e3b2eedcfdf18I took the liberty of upgrading CLUBB's PDF closure and related code to a vectoreditnew_tsdadg_pdf.F90editadvance_clubb_core_module.F90editLY93_pdf.F90editcalc_roots.F90editadg1_adg2_3d_luhar_pdf.F90editnumerical_check.F90editpdf_closure_module.F90editnew_pdf.F90editpdf_utilities.F90editnew_pdf_main.F90mono_flux_limiter.F90d06277e3aa5630a079c12066c053c590b07407c41534278304000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the monotonic flux limiter to account for vector variables u and v. The monotonic flux limiter can now be used with um/upwp and vm/vpwp. Compared to previous results with l_predict_upwp_vpwp turned on and the call to the monotonic flux limiter omitted for um/upwp and vm/vpwp, the results are an exact match for all cases except ATEX, CGILS S6, CGILS S11, CGILS S12, and MC3E. The l_predict_upwp_vpwp flag is still turned off, so default CLUBB results remain the same as the previous version. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8774 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 863243836db1aa00e0e247647ab808ea9462c1c2 2018-08-14 20:25:04 +0000d06277e3aa5630a079c12066c053c590b07407c4I updated the monotonic flux limiter to account for vector variables u and v.editmono_flux_limiter.F90stats_variables.F90advance_clubb_core_module.F90stats_zt_module.F901712c2ec43aed1ce5db0776585a6fe8ecafaaddd1534282717000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output. I also made small corrections to the upwp and vpwp clipping numbers and I introduced error checking so that l_predict_upwp_vpwp can only currently be used with ADG1 and with implicit turbulent advection. Since new stats have been added to the zt file, this revision is BIT_CHANGING. However, only the zt stats output files are changed. The remaining stats output files from this revision are an exact match to the previous revision for all cases. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8775 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 4b307e4c38a33dedfd187e2bd134de4c5dac6bb0 2018-08-14 21:38:37 +00001712c2ec43aed1ce5db0776585a6fe8ecafaadddI am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output.editstats_zt_module.F90editstats_variables.F90editadvance_clubb_core_module.F90mono_flux_limiter.F90e332712a0fa6b7e7c8ec53707e7d36abadf624071534282930000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic flux limiter. git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8776 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 3bb8862710542400fad91e2e495e4c9358f91496 2018-08-14 21:42:10 +0000e332712a0fa6b7e7c8ec53707e7d36abadf62407In r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic fluxeditmono_flux_limiter.F90model_flags.F90667c9ea18924393a999502f05d11138850316c1d1534285132000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am turning on the l_predict_upwp_vpwp code! This revision is BIT_CHANGING, in the best way possible! git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8778 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: fbf124c85d68eda019777aac6790e369e30e829c 2018-08-14 22:18:52 +0000667c9ea18924393a999502f05d11138850316c1dI am turning on the l_predict_upwp_vpwp code!editmodel_flags.F90advance_wp2_wp3_module.F907bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcd1534366437000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8780 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 52dc00a1ac3994ccf521d693f0625dee06aa6242 2018-08-15 20:53:57 +00007bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcdImproved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834editadvance_wp2_wp3_module.F90advance_windm_edsclrm_module.F90a62d534df9295f8929a7966f6742f1bb5fbc226b1534370242000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational efficiency of windm_edsclr_lhs. See clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8781 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: b30e9584d2828083fc42dd3580ca6438667216c2 2018-08-15 21:57:22 +0000a62d534df9295f8929a7966f6742f1bb5fbc226bImproved computational efficiency of windm_edsclr_lhs. See clubb:ticket:834editadvance_windm_edsclrm_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90turbulent_adv_pdf.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90mean_adv.F90a6b375b1820233dab18dad3bc9e4757a56a451391534373430000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the name of _turb to _ta, and _advm to _ma to keep with the current naming conventions. Also fixed line length warnings. clubb:ticket:834 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8782 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: eb87f1b4a5550ecc44fbe749862b6cff656f166e 2018-08-15 22:50:30 +0000a6b375b1820233dab18dad3bc9e4757a56a45139Changed the name of _turb to _ta, and _advm to _ma to keep with the current naming conventions. Also fixed line length warnings. clubb:ticket:834editturbulent_adv_pdf.F90editmean_adv.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90stats_clubb_utilities.F90pdf_closure_module.F9094a340e184b616d28bd6c155f8ddb84f193d1ab51534448108000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded grid_class to the dependency lists of the pdf files that were changed in commit 8773 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8783 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: 9bdea81a104b568440d7e96139ea0b8af8155aeb 2018-08-16 19:35:08 +000094a340e184b616d28bd6c155f8ddb84f193d1ab5Added grid_class to the dependency lists of the pdf files that were changed in commit 8773editpdf_closure_module.F90editstats_clubb_utilities.F90stats_clubb_utilities.F90pdf_closure_module.F9057ccb4777be0ec4b156749677932f99785b9307b1534448231000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAccidental commit, undoing 8783 git-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8784 f1ce5500-ea2b-45e0-a110-28dffb978352 Former-commit-id: cabf23cfdfd5a6e69982c2c8d22c7f2f5899becb 2018-08-16 19:37:11 +000057ccb4777be0ec4b156749677932f99785b9307bAccidental commit, undoing 8783editstats_clubb_utilities.F90editpdf_closure_module.F90model_flags.F90b6174f642f2043d29a8380a5093d18b7a84380511535473340000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffingriffinb@lyons.math.uwm.eduI am changing the default setting of flags l_min_wp2_from_corr_wx and l_min_xp2_from_corr_wx to true to match what is found in configurable_model_flags.in. This is for #835 in CLUBB GIT Issues. 2018-08-28 11:22:20 -0500b6174f642f2043d29a8380a5093d18b7a8438051I am changing the default setting of flags l_min_wp2_from_corr_wx andeditmodel_flags.F90advance_clubb_core_module.F90advance_helper_module.F9026007da2390b402bded083d130374840ca0c354c1535582510000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified compute_Cx_fnc_Richardson. Made it a subroutine, modified the algorithm slightly, removed use of allocates and deallocates from it, removed verical_avg call to avoid redoing calculations and precalculated some divides. This saved clubb_core about 8% runtime overall. see clubb:issues:834 2018-08-29 17:41:50 -050026007da2390b402bded083d130374840ca0c354cModified compute_Cx_fnc_Richardson. Made it a subroutine, modified the algorithm slightly, removed use of allocates and deallocates from it, removed verical_avg call to avoid redoing calculations and precalculated some divides. This saved clubb_core about 8% runtime overall. see clubb:issues:834editadvance_helper_module.F90editadvance_clubb_core_module.F90advance_helper_module.F9025761f981a2c0900733322ee3e3c70342e8cbdb41535585528000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoved print line. Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases. 2018-08-29 18:32:08 -050025761f981a2c0900733322ee3e3c70342e8cbdb4Removed print line. Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases.editadvance_helper_module.F90pdf_parameter_module.F90pdf_closure_module.F9072b36ee56fd04d6703723b2a64e1997c166091971535591224000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834 2018-08-29 20:07:04 -050072b36ee56fd04d6703723b2a64e1997c16609197Changed the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834editpdf_closure_module.F90editpdf_parameter_module.F90advance_clubb_core_module.F90stats_zm_module.F90stats_variables.F90clip_explicit.F90advance_xm_wpxp_module.F90mono_flux_limiter.F908d6e9153ccb95af59afbcd9fad0e0b4258801ccf1535655087000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffingriffinb@brock.math.uwm.eduI am adding source code for the introduction of budgets for predictive upwp and vpwp. This is the first commit of a two-stage commit. 2018-08-30 13:51:27 -05008d6e9153ccb95af59afbcd9fad0e0b4258801ccfI am adding source code for the introduction of budgets for predictive upwpeditadvance_clubb_core_module.F90editclip_explicit.F90editmono_flux_limiter.F90editstats_zm_module.F90editstats_variables.F90editadvance_xm_wpxp_module.F90mixing_length.F908b6e616a45f804c498d3ce6ac4a802b30fffbab81535671998000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834 2018-08-30 18:33:18 -05008b6e616a45f804c498d3ce6ac4a802b30fffbab8Improved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834editmixing_length.F90lapack_wrap.F9085d980ead9d6e04b380fb326fcd63a72d09ac7501535676996000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834 2018-08-30 19:56:36 -050085d980ead9d6e04b380fb326fcd63a72d09ac750Improved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834editlapack_wrap.F90saturation.F902b2c9519389dab1529f1ac5fea57ceb6157f902f1535753136000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834 2018-08-31 17:05:36 -05002b2c9519389dab1529f1ac5fea57ceb6157f902fModified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834editsaturation.F90grid_class.F904a6c2943cad5ec872cc9459201436bc7fc562d6d1535757226000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCopied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834 2018-08-31 18:13:46 -05004a6c2943cad5ec872cc9459201436bc7fc562d6dCopied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834editgrid_class.F90fill_holes.F90advance_clubb_core_module.F90stats_clubb_utilities.F90clubb_api_module.F90mono_flux_limiter.F90a7117763631381c34ab604941651b72b1c7a9b691535760872000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanged vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834 2018-08-31 19:14:32 -0500a7117763631381c34ab604941651b72b1c7a9b69Changed vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834editclubb_api_module.F90editmono_flux_limiter.F90editadvance_clubb_core_module.F90editfill_holes.F90editstats_clubb_utilities.F90clip_explicit.F90647260c7c91d494a968c69c0ed377a322c257cd81536110946000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834 2018-09-04 20:29:06 -0500647260c7c91d494a968c69c0ed377a322c257cd8Improved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834editclip_explicit.F90surface_varnce_module.F908a9a8dd41a238142d1e2f7543fa5b831f004ec331536871092000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI made the surface splatting terms conservative. That is, I subtracted from wp2_sfc when splatting adds to up2_sfc and vp2_sfc, in such a way that the sum is unchanged. To avoid temporal noise, I needed to preserve the realizability of wpthlp_sfc and wprtp_sfc, rather than allowing wp2_sfc to be clipped all the way down to w_tol_sqd. Because I added clipping on thlp2_sfc and rtp2_sfc, this commit is BIT_CHANGING, but only for the most sensitive cases. For #832. 2018-09-13 15:38:12 -05008a9a8dd41a238142d1e2f7543fa5b831f004ec33I made the surface splatting terms conservative. That is, I subtracted from wp2_sfceditsurface_varnce_module.F90advance_xp2_xpyp_module.F90523ca23a88a67377b230620f84357d520aa6d9041537204202000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2. The same sort of clipping already exists for wp2. With the splatting terms active, I found a configuration of twp_ice where the clipping on up2 and vp2 is useful. However, in the standard configuration, none of the priority cases changes answers because none have up2 and vp2 > 1000. For #832. 2018-09-17 12:10:02 -0500523ca23a88a67377b230620f84357d520aa6d904I added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90surface_varnce_module.F90advance_helper_module.F90lapack_wrap.F9064a6fbc07bc7798dd63cd7fcad47f30a660f315b1537543324000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduThis commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING. To prevent noise in the vertical profiles, the splatting terms needed to be clipped. Unfortunately, this will introduce some undesired dependence on time step. At some point, we may wish to treat the splatting terms in a semi-implicit way. To make the splatting terms more effective, the return-to-isotropy coefficient (C4) has been reduced. This puts it more in accord with standard values, and it allows CLUBB to be more anisotropic. Other coefficients were also retuned. Along the way, I broke up some comment lines to avoid a warning about line length. Also, I commented out the check on the presence of the Id tag. That tag is no longer useful because CLUBB has moved from svn to git. For #832. 2018-09-21 10:22:04 -050064a6fbc07bc7798dd63cd7fcad47f30a660f315bThis commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING.editadvance_helper_module.F90editadvance_clubb_core_module.F90editsurface_varnce_module.F90editlapack_wrap.F90pdf_closure_module.F90constants_clubb.F90f61d9953e79775fa70f6083e07c962aefc6459421537562375000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834 2018-09-21 15:39:35 -0500f61d9953e79775fa70f6083e07c962aefc645942Added functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834editpdf_closure_module.F90editconstants_clubb.F90advance_clubb_core_module.F90e6ef3b8923f3641f496708629e6fd0239b3ea1601537823184000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 I neatened and/or elaborated comments on the inputs and outputs of advance_clubb_core. 2018-09-24 16:06:24 -0500e6ef3b8923f3641f496708629e6fd0239b3ea160Update advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90f28cdc7db7c73dde06d0de691ed5dc78302a2e321538943429000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI clipped sigma_sqd_w to prevent interpolated values of it from going negative. This avoids crashes in the lba, twp_ice, and mc3e cases when l_call_pdf_closure_twice = .true. Small negative values in sigma_sqd_w were causing small negative values of varnce_w_1 and varnce_w_2 at the lowest grid level, which then caused floating point exceptions in the pdf closure. l_call_pdf_closure_twice = .true. is not the default setting, but it is the setting in CAM6. Hopefully this code change will help allow the new version of CLUBB to be backwards-compatible with the CAM6 version. A few numbers in the output did change in the last digit or two in the arm_97 case. Maybe it was only sigma_sqd_w itself that was changing, and that value wasn't used anywhere? Anyway, technically, this commit is BIT_CHANGING. For issue larson-group/cam#116. 2018-10-07 15:17:09 -0500f28cdc7db7c73dde06d0de691ed5dc78302a2e32I clipped sigma_sqd_w to prevent interpolated values of iteditadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90fe9d81553653c1039c48f6732dfb3ccfae53cb801539710115000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a new option to diagnose the dissipation time scale, tau, first and then use it to diagnose the mixing length, Lscale, as Lscale = tau * tke. The purpose is twofold: 1) reduce computational expense of computing Lscale; and 2) increase tau near the ocean surface, in the hopes of improving hurricane surface winds. The option is currently turned off with the flag l_diag_Lscale_from_tau, and so the results are an exact match to those produced by the prior code. For #842. 2018-10-16 12:15:15 -0500fe9d81553653c1039c48f6732dfb3ccfae53cb80I added a new option to diagnose the dissipation time scale, tau, firsteditadvance_clubb_core_module.F90editmodel_flags.F90advance_xm_wpxp_module.F906fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea71541017963000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI found a new way to diagnose upthvp. Instead of using a bound on correlations, it relies on the formula upthvp = upthlp + 200 K uprtp + 2000 K uprcp. upthlp and uprtp are then diagnosed based on a budget equation from Andre et al. The new formula produces more upthvp aloft, where upwp is small. The budget of upwp for the BOMEX case looks plausible. I also discovered that when upthvp is better diagnosed, then the upwp_pr4 term is unnecessary. So I zeroed it out for now. For #841. 2018-10-31 15:32:43 -05006fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea7I found a new way to diagnose upthvp. Instead of using a bound on correlations, it relieseditadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90970984d58351c5682e819dc42b48d4824bacc67b1541777541000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.eduintroducing error into clubb core for testing larson-group/sys_admin#533 2018-11-09 09:32:21 -0600970984d58351c5682e819dc42b48d4824bacc67bintroducing error into clubb core for testing larson-group/sys_admin#533editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90ab452aecedc7073f07314bdc6b068de879727ae61541788295000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.edureverting error that was introduced larson-group/sys_admin#533 2018-11-09 12:31:35 -0600ab452aecedc7073f07314bdc6b068de879727ae6reverting error that was introduced larson-group/sys_admin#533editadvance_xm_wpxp_module.F90parameters_tunable.F90model_flags.F90fd04a5135f41fc7ba52f9012aa2864357fb965f01542138244000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am briefly changing some of the flag and parameter settings in CLUBB to match what is currently used by CAM. This change will be undone with the next trunk (master) commit. 2018-11-13 13:44:04 -0600fd04a5135f41fc7ba52f9012aa2864357fb965f0I am briefly changing some of the flag and parameter settings in CLUBBeditparameters_tunable.F90editmodel_flags.F90parameters_tunable.F90model_flags.F909a2cfb9ac48201c27fe347841ab5cb5f38551c211542139368000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I am briefly changing some of the flag and parameter settings in CLUBB" This reverts commit adc5247053fe1bb22a8e73f747a39ed9d467d3fd. 2018-11-13 14:02:48 -06009a2cfb9ac48201c27fe347841ab5cb5f38551c21Revert "I am briefly changing some of the flag and parameter settings in CLUBB"editmodel_flags.F90editparameters_tunable.F90pdf_closure_module.F908b4636b0b9ba044518efadf97f44604fb52658e41542840937000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a couple of comments reminding users to change the conditions in the SILHS check if the conditions change in the calculation of cloud fraction in PDF closure. 2018-11-21 16:55:37 -06008b4636b0b9ba044518efadf97f44604fb52658e4I added a couple of comments reminding users to change the conditions ineditpdf_closure_module.F90parameters_tunable.F90model_flags.F9037c8f1b5b614f57901e66d7ee8e6e07d09c57c541544053895000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB"" This reverts commit 7e8b4f7f20f25bccdbcaca0fccb970d793518133. I am briefly re-setting the CAM-specific flag and parameter settings for CLUBB for use in CAM-CLUBB. I am going to make (another) tag of this revision, and then again revert this revision. 2018-12-05 17:51:35 -060037c8f1b5b614f57901e66d7ee8e6e07d09c57c54Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB""editparameters_tunable.F90editmodel_flags.F90parameters_tunable.F90model_flags.F9066cc9401b0f477b7d9875c4354ccb974788834871544054506000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB""" This reverts commit a56d278f12df2c85116c41459bd54c254ee94b62. I again reverting back from the flag and parameter settings used in CAM-CLUBB and returning the CLUBB master to its normal settings. 2018-12-05 18:01:46 -060066cc9401b0f477b7d9875c4354ccb97478883487Revert "Revert "Revert "I am briefly changing some of the flag and parameter settings in CLUBB"""editmodel_flags.F90editparameters_tunable.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F904c7b25bb90d21e435fd03474d328228fc11d097b1545156359000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI committed a subroutine, diagnose_upxp, that calculates upthlp, uprtp, vpthlp, vprtp using a simple diagnostic version of Eqn. 7 of Andre et al. (1978). Ultimately, CLUBB will use this in order to compute the buoyancy terms in the upwp and vpwp budgets. The results match the prior repo results bit for bit if, in the prior code, I pull tau_C6_zm inside the parentheses in the prior calculation of upthlp and uprtp: upthvp = - 0.3_core_rknd * tau_C6_zm * ( upwp * ddzt( thlm ) + wpthlp * ddzt( um ) & + 200.0_core_rknd * ( upwp * ddzt( rtm ) + wprtp * ddzt( um ) ) ) & This is needed to avoid a change in the order of operations, which changes the results in IEEE arithmetic. I also need to set C6=1 and C7=0 in subroutine diagnose_upxp. However, what I am committing includes C6 and C7 in subroutine diagnose_upxp. It doesn't change the results much, but nevertheless the results are BIT_CHANGING. In addition, four new stats are added to all_stats.in and standard_stats.in: upthlp, uprtp, vpthlp, and vprtp. For #841. 2018-12-18 12:05:59 -06004c7b25bb90d21e435fd03474d328228fc11d097bI committed a subroutine, diagnose_upxp, that calculateseditadvance_xm_wpxp_module.F90editstats_variables.F90editstats_zm_module.F90pdf_closure_module.F906edf0adb68cffee7a4ee15a75bdbedac20d2d42e1545352741000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@mitch.math.uwm.eduImproved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834 2018-12-20 18:39:01 -06006edf0adb68cffee7a4ee15a75bdbedac20d2d42eImproved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834editpdf_closure_module.F90setup_clubb_pdf_params.F90ec1fb66c9630d79bc710eeca12df3716ba7b534d1545526862000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a large outer "do" loop over all vertical level, and instead, promote single-level variable declarations to arrays and use where...elsewhere statements rather than else...elseif statments. The part of setup_clubb_pdf_params.F90 that is being modified is the part of the code that calculates the PDF component (in-precip) means and (in-precip) standard deviations of hydrometeor species for the hydrometeor portion of the PDF. This is being done in an effort to speed up CLUBB. This does not pertain to CLUBB core, but it does pertain to analytic KK or SILHS cases. When the gfortan optimization level is decreased to -O0 or -O1, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. When the gfortran optimization level is left at the current default of -O2, the results remain an exact match for many cases, including some that use upscaled KK or SILHS, but results change for ARM 97, DYCOMS-II RF02 DO, ASTEX A209, TWP-ICE, and MC3E, which tecnically makes this revision BIT_CHANGING. 2018-12-22 19:01:02 -0600ec1fb66c9630d79bc710eeca12df3716ba7b534dI am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a largeeditsetup_clubb_pdf_params.F90pdf_utilities.F90setup_clubb_pdf_params.F90Nc_Ncn_eqns.F90b19476be5eb8e937f24c39f06a37f3981da450971546468210000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code within setup_clubb_pdf_parameters.F90 in order to take more code out of the outer loop over all vertical levels and internally promote scalars to vectors. This is designed to speed up the code for analytic KK or SILHS runs. The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-02 16:30:10 -0600b19476be5eb8e937f24c39f06a37f3981da45097I am updating the code within setup_clubb_pdf_parameters.F90 in order to takeeditNc_Ncn_eqns.F90editpdf_utilities.F90editsetup_clubb_pdf_params.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90ae02afd6021e9f3e38b95c203221042af7d877521546539880000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduTo diagnose uprcp using CLUBB's PDF machinery, I fed some variables related to horizontal wind through some argument lists. The code change is incomplete at this point. The results do not change because the variables are declared locally in subroutine pdf_closure, and nothing is done with the output, uprcp. The wind variables are not even initialized at this point. Nonetheless, the results of the arm case are bit-for-bit identical with the prior results. The units tests still pass. For #841. 2019-01-03 12:24:40 -0600ae02afd6021e9f3e38b95c203221042af7d87752To diagnose uprcp using CLUBB's PDF machinery,editadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90advance_clubb_core_module.F90pdf_closure_module.F906873c26df22486e27273dfbdf4f80a09e605082a1546624367000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduContinuing with diagnosis of uprcp using CLUBB's PDF, I fed the arguments through subroutine pdf_closure. I have yet to feed them through pdf_closure_driver. For the arm case, the results are bit-for-bit identical. For #841. 2019-01-04 11:52:47 -06006873c26df22486e27273dfbdf4f80a09e605082aContinuing with diagnosis of uprcp using CLUBB's PDF,editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90d2812cc427f191ac3810fa070100ed0daea03ce91546711817000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduMore code to diagnose uprcp using CLUBB's PDF. I fed the relevant arguments through pdf_closure_driver and advance_xm_wpxp. The results are still bit-for-bit identical because uprcp does not (yet) interact with the rest of the code. I put some idiot-proofing in setup_clubb_core because the arguments have not yet been fed through advance_clubb_core and preserved from time step to time step. The unit tests passed. For #841. 2019-01-05 12:10:17 -0600d2812cc427f191ac3810fa070100ed0daea03ce9More code to diagnose uprcp using CLUBB's PDF.editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F907e26b5bc89f6b289ee3b8037c7aee3fc748ff0181546715059000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduCorrection for the last uprcp-related commit: uprcp_zt is now interpolated to the zm levels in the case in which the pdf closure is called only once. The answers are still bit-for-bit identical. For #841. 2019-01-05 13:04:19 -06007e26b5bc89f6b289ee3b8037c7aee3fc748ff018Correction for the last uprcp-related commit:editadvance_clubb_core_module.F90pdf_utilities.F90Nc_Ncn_eqns.F902e9ec3492f275db7e1673a66b31b2dc7e0a1e0101546989949000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am correcting the code so that the Nightly Uninitialized Variables Test (Oracle Fortran) works correctly again. I've noticed that FORTRAN's where statement doesn't always prevent a certain part of a where ... elsewhere block from being entered in the same way that it prevents a certain part of an if ... elseif block from being entered. Code that is not supposed to be entered under certain conditions gets entered and then the mask is applied later, throwing away the results. However, if the intrusion causes a floating point exception for whatever reason, the run stops. I remember overhearing talk between Gunther and Vince about the where statement "guessing" wrong sometimes. Is there a way to stop it from "guessing" wrong or at least reduce the number of wrong "guesses"? 2019-01-08 17:25:49 -06002e9ec3492f275db7e1673a66b31b2dc7e0a1e010I am correcting the code so that the Nightly Uninitialized Variables TesteditNc_Ncn_eqns.F90editpdf_utilities.F90setup_clubb_pdf_params.F90559b1e46e16f3fc7c3c426ee68e34c6cc9ec77991547075606000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to pull parts of setup_pdf_parameters outside of a large "do" loop over all vertical levels and promote subroutines that are called from setup_pdf_parameters to cover the whole array of vertical levels, rather than just one level at a time. This code change is simply for a statistical output subroutine (pdf_param_hm_stats) within setup_pdf_parameters. This all is in an effort to speed up the code. This revision outputs stats at thermodynamic level 1 (which is below the model surface), whereas the subroutine wasn't previously called at level 1. This makes the results BIT_CHANGING, but only for the stats that are output at level 1 of the zt output files. The results in other GrADS output files (zm, sfc, etc.) from this revision are an exact match to the results in the same GrADS output files from the previous revision for all cases. 2019-01-09 17:13:26 -0600559b1e46e16f3fc7c3c426ee68e34c6cc9ec7799I am continuing to pull parts of setup_pdf_parameters outside of a large "do"editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90495d473a8f734fbab6da71b24c0a6ca171aab6d71547146438000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am pulling statistical output subroutine pdf_param_ln_hm_stats outside of the large "do" loop in setup_pdf_parameters. This is part of a larger code speed-up effort. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-10 12:53:58 -0600495d473a8f734fbab6da71b24c0a6ca171aab6d7I am pulling statistical output subroutine pdf_param_ln_hm_stats outsideeditsetup_clubb_pdf_params.F90pdf_utilities.F90ab433cfbf941bd9b7042f3ca7037e46cfdd3f47d1547252742000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope. 2019-01-11 18:25:42 -0600ab433cfbf941bd9b7042f3ca7037e46cfdd3f47dChanging the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope.editpdf_utilities.F90stats_variables.F90460f0559e1c307e6e01794b66d6afc26284eef711547566530000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.educommenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566 2019-01-15 09:35:30 -0600460f0559e1c307e6e01794b66d6afc26284eef71commenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566editstats_variables.F90stats_variables.F905659e7c24d5ebc1c52e9d4868aede6f4b8d106231547569661000http://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34mcfadd34@uwm.eduuncommenting threadprivate larson-group/sys_admin#566 2019-01-15 10:27:41 -06005659e7c24d5ebc1c52e9d4868aede6f4b8d10623uncommenting threadprivate larson-group/sys_admin#566editstats_variables.F90setup_clubb_pdf_params.F902820b9199e5e5340b41a0331328f091283cc09311547593831000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have changed the structure of setup_pdf_parameters so that the subroutine that packs up the hydrometeor PDF parameters, subroutine pack_hydromet_pdf_params, is called from outside the loop over all vertical levels. Within pack_hydromet_pdf_params, variables have been promoted to arrays over all vertical levels. This leaves the reamining outer loops over all vertical levels to include only a few subroutines (diagnosing correlations and the Cholesky stuff). The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-15 17:10:31 -06002820b9199e5e5340b41a0331328f091283cc0931I have changed the structure of setup_pdf_parameters so that the subroutine thateditsetup_clubb_pdf_params.F90pdf_closure_module.F9079a4333484ac252ffe654daacb9a46593099c6a21547758965000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReturned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING. 2019-01-17 15:02:45 -060079a4333484ac252ffe654daacb9a46593099c6a2Returned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING.editpdf_closure_module.F90stats_variables.F90stats_zm_module.F90advance_xm_wpxp_module.F9049feb7636991743ae49e11deacc358da1afff9ee1547849925000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI am turning on the new calculation of uprcp that uses CLUBB's PDF. Also, I am re-introducing the pressure term upwp_pr4, because it is a useful preconditioner for producing an upgradient flux in upwp. This commit is BIT_CHANGING both because the answers change and because new outputs (uprcp, upthvp, ...) are written to disk. The gabls3_night case is degraded, but the other cases look comparable or better than before. For #841. 2019-01-18 16:18:45 -060049feb7636991743ae49e11deacc358da1afff9eeI am turning on the new calculation of uprcp that uses CLUBB's PDF.editstats_variables.F90editadvance_xm_wpxp_module.F90editstats_zm_module.F90setup_clubb_pdf_params.F904cea0a0f193d06e73a5877c561e63deb709cb7821548367895000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI modified the code in setup_clubb_pdf_params.F90 to use only one call to function pdf2hydromet_idx or function hydromet2pdf_idx within a loop, instead of multiple calls within array indices for different variables. This cuts down on excessive calls and also makes the code a little more nicely readable. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-01-24 16:11:35 -06004cea0a0f193d06e73a5877c561e63deb709cb782I modified the code in setup_clubb_pdf_params.F90 to use only one call toeditsetup_clubb_pdf_params.F90parameters_tunable.F9026acd1f23eba8ae32b195168c32a075c2baa1b461548854661000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch to match the clubb and silhs directories in the bmg929/atm/clubb_silhs_v2 branch of E3SM. This commit can be considered a list of modifications that were done to the CLUBB code in the clubb_silhs branch of E3SM. It should be noted that the version of CLUBB used in the clubb-silhs branches of E3SM is r8220. This commit provides a base to marge up CLUBB and SILHS to more current versions for use in E3SM CLUBB-SILHS. 2019-01-30 07:24:21 -060026acd1f23eba8ae32b195168c32a075c2baa1b46I am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch toeditparameters_tunable.F90parameters_tunable.F90model_flags.F90cd399238c1e54c874b145501fcb815d6e4a2b56d1548869329000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am setting model flags and tunable parameters in the clubb_E3SM_silhs branch in a backwards-compatible fashion to r8220, which was the version of CLUBB and SILHS that was previously used in E3SM-CLUBB-SILHS. 2019-01-30 11:28:49 -0600cd399238c1e54c874b145501fcb815d6e4a2b56dI am setting model flags and tunable parameters in the clubb_E3SM_silhs brancheditmodel_flags.F90editparameters_tunable.F90transform_to_pdf_module.F90f8c3b05eee249e8acb82087135d10a3349180c721548885592000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI temporarily set l_clip_extreme_chi_sample_pts back to false in the clubb_E3SM_silhs branch. This is being done to test for backwards compatibility while upgrading E3SM-CLUBB-SILHS. The goal is to produce a version of SILHS that is similar in all ways to the version of SILHS that was found in r8220. Once the merger is complete, this flag will likely be reset back to true. 2019-01-30 15:59:52 -0600f8c3b05eee249e8acb82087135d10a3349180c72I temporarily set l_clip_extreme_chi_sample_pts back to false in theedittransform_to_pdf_module.F90transform_to_pdf_module.F90d0fdb430ac89f446a02c3fc2a04cfeb83bf861031549729862000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I temporarily set l_clip_extreme_chi_sample_pts back to false in the" I am setting l_clip_extreme_chi_sample_pts back to true for use in E3SM-CLUBB-SILHS. This reverts commit 677c6f9d54ef542325ca3308980c6c22cac6207a. 2019-02-09 08:31:02 -0800d0fdb430ac89f446a02c3fc2a04cfeb83bf86103Revert "I temporarily set l_clip_extreme_chi_sample_pts back to false in the"edittransform_to_pdf_module.F90advance_xm_wpxp_module.F90lapack_wrap.F90719a2e336400711fd23caf13f000f9b76bc1cbe61552087005000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI improved the error messages when LU decomp. fails within advance_xm_wpxp_module.F90. 2019-03-08 17:16:45 -0600719a2e336400711fd23caf13f000f9b76bc1cbe6I improved the error messages when LU decomp. fails withineditlapack_wrap.F90editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F909bdd16bbeac12acbb5cd1abacd3651e9fb9864eb1552501314000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduImproved error message prints in advance_xm_wpxp. 2019-03-13 13:21:54 -05009bdd16bbeac12acbb5cd1abacd3651e9fb9864ebImproved error message prints in advance_xm_wpxp.editadvance_xm_wpxp_module.F90advance_wp2_wp3_module.F909ebad48929103e747598b00f2a5e1ca1916d7a2e1552534478000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added improved LHS and RHS print statements when a LU decomp. error occurs in advance_wp2_wp3. 2019-03-13 22:34:38 -05009ebad48929103e747598b00f2a5e1ca1916d7a2eI added improved LHS and RHS print statements when a LU decomp. error occurseditadvance_wp2_wp3_module.F90clubb_api_module.F90e89d13da7946db4a7751cacfb92a92f419f268d41552536682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added params_list to the list of variables that are accessible through clubb_api_module. 2019-03-13 23:11:22 -0500e89d13da7946db4a7751cacfb92a92f419f268d4I added params_list to the list of variables that are accessible througheditclubb_api_module.F90advance_clubb_core_module.F90sigma_sqd_w_module.F902dcd21b8d1335f13ae48c5e9202048cbdabcd7a31553795121000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the first step for updating the code that calculates sigma_sqd_w. I have included upwp^2/(up2*wp2) and vpwp^2/(vp2*wp2) in the calculation of the maximum squared correlation for the limit of sigma_sqd_w when the l_predict_upwp_vpwp flag is enabled. When the l_predict_upwp_vpwp flag is turned off, the results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. When the l_predict_upwp_vpwp flag in enabled (which it is by default), this revision is BIT_CHANGING. However, only a couple of cases show visible changes on the plots. Git Issue Reference: #852. 2019-03-28 12:45:21 -05002dcd21b8d1335f13ae48c5e9202048cbdabcd7a3I am making the first step for updating the code that calculates sigma_sqd_w.editsigma_sqd_w_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F9020c0f6ab99737edaa2ba6f320ba059ab7fc3783f1553982073000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a log-law height dependence to the code that diagnoses tau directly, rather than diagnosing the mixing length, Lscale (l_diag_Lscale_from_tau = .true.). However, that option is set to .false. by default, and hence the nightly test results should be unchanged. For #842. 2019-03-30 16:41:13 -050020c0f6ab99737edaa2ba6f320ba059ab7fc3783fI added a log-law height dependence to the code that diagnoseseditadvance_clubb_core_module.F90clubb_api_module.F905c39d243769b471253986d92bdfb11d92ae08d5b1556160033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added fill_holes_hydromet_api to clubb_api_module.F90. 2019-04-24 21:40:33 -05005c39d243769b471253986d92bdfb11d92ae08d5bI added fill_holes_hydromet_api to clubb_api_module.F90.editclubb_api_module.F90mt95.f90stats_variables.F90model_flags.F90gmres_cache.F901dd81aca877e9ea8bfa88c91c46fcf5e611852851558450464000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added a new python script, check_for_missing_threadprivate.py, which checks whether a module variable in CLUBB or SILHS has been declared but not designated as a threadprivate. In such a case, the variables are not thread safe and different threads may store a variable in the same memory location, causing errors. In particular, such an omission may cause CAM-CLUBB-SILHS to produce different results when different numbers of openmp threads are selected. I then added some threadprivate statements in order to make the test pass. For larson-group/cam#121. 2019-05-21 09:54:24 -05001dd81aca877e9ea8bfa88c91c46fcf5e61185285I added a new python script, check_for_missing_threadprivate.py,editstats_variables.F90editgmres_cache.F90editmodel_flags.F90editmt95.f90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90pdf_closure_module.F90stats_clubb_utilities.F90pdf_parameter_module.F90setup_clubb_pdf_params.F90variables_diagnostic_module.F90variables_prognostic_module.F9072bfbae28a4d94532738cb031a1a5620caa78e3e1559079583000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834 2019-05-28 16:39:43 -050072bfbae28a4d94532738cb031a1a5620caa78e3eModifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834editstats_clubb_utilities.F90editvariables_prognostic_module.F90editpdf_parameter_module.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90editsetup_clubb_pdf_params.F90editadvance_clubb_core_module.F90editvariables_diagnostic_module.F90editnumerical_check.F90editclubb_api_module.F90variables_diagnostic_module.F90variables_prognostic_module.F902f805be18b00c5bb0cb7a0fd6133372c91513b961559173799000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed dycoms restart run failure. The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834 2019-05-29 18:49:59 -05002f805be18b00c5bb0cb7a0fd6133372c91513b96Fixed dycoms restart run failure. The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834editvariables_diagnostic_module.F90editvariables_prognostic_module.F90FileForTestingUpdateScript.txtfae81b119a174f67903ecdf4a576eb7b83f3a9111559313403000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded temp test file Adding a test file to verify wrf updates are working 2019-05-31 09:36:43 -0500fae81b119a174f67903ecdf4a576eb7b83f3a911Added temp test fileaddFileForTestingUpdateScript.txtFileForTestingUpdateScript.txtcb11bc29e16abcdf34202a84e8c2ea5d7e3afbb11559313981000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove test file The wrf update is working now, no need to keep this file around. 2019-05-31 09:46:21 -0500cb11bc29e16abcdf34202a84e8c2ea5d7e3afbb1Remove test filedeleteFileForTestingUpdateScript.txtadvance_clubb_core_module.F90300de16a3e09fca0d7e720a1e3755832aff3098b1561766277000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical. 2019-06-28 18:57:57 -0500300de16a3e09fca0d7e720a1e3755832aff3098bAdding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical.editadvance_clubb_core_module.F90Skx_module.F9025e23c9a39541b8b5b4390afe03350b95bb9e5391562022485000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOptimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases. 2019-07-01 18:08:05 -050025e23c9a39541b8b5b4390afe03350b95bb9e539Optimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases.editSkx_module.F90stats_zm_module.F90stats_variables.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F907fd2d937257edeb8764cce7e742ab680900441751562182842000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequency 2019-07-03 14:40:42 -05007fd2d937257edeb8764cce7e742ab68090044175ticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequencyeditstats_zm_module.F90editstats_variables.F90editparameter_indices.F90editadvance_clubb_core_module.F90editparameters_tunable.F90adg1_adg2_3d_luhar_pdf.F901f2facc146cb5190975cca5a6387fb6e79e72d251562888255000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855 2019-07-11 18:37:35 -05001f2facc146cb5190975cca5a6387fb6e79e72d25Modifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F907036e850e9581d27aa4e2915a2e8dc7da7c77d631562956898000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReplacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855 2019-07-12 13:41:38 -05007036e850e9581d27aa4e2915a2e8dc7da7c77d63Replacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855editpdf_closure_module.F90new_tsdadg_pdf.F90pdf_utilities.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_pdf_main.F90a6744484daca24377722de22d516fe1931d6ac671562976298000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855 2019-07-12 19:04:58 -0500a6744484daca24377722de22d516fe1931d6ac67Making procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855editnew_pdf_main.F90editnew_tsdadg_pdf.F90editpdf_closure_module.F90editpdf_utilities.F90editadg1_adg2_3d_luhar_pdf.F90LY93_pdf.F903d127ce9735789aaa773085437c70ea0ad7febb91562976519000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMissed one 2019-07-12 19:08:39 -05003d127ce9735789aaa773085437c70ea0ad7febb9Missed oneeditLY93_pdf.F90calc_pressure.F90e6b21ea2242dbb344bf34cebb0bbd9a3e7ea77311563325211000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added a new file, calc_pressure.F90, which contains code for initializing and updating the vertical profile of pressure and exner. 2019-07-16 20:00:11 -0500e6b21ea2242dbb344bf34cebb0bbd9a3e7ea7731I have added a new file, calc_pressure.F90, which contains code for initializingaddcalc_pressure.F90advance_clubb_core_module.F90calc_pressure.F90clubb_api_module.F90402505b5c37287ccd4d00e615b00b20c0c1becae1563416347000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated CLUBB so that pressure is updated after mean fields have been advanced every timestep. The results are BIT_CHANGING. 2019-07-17 21:19:07 -0500402505b5c37287ccd4d00e615b00b20c0c1becaeI updated CLUBB so that pressure is updated after mean fields have beeneditadvance_clubb_core_module.F90editcalc_pressure.F90editclubb_api_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90db9f32467f1f0d7cd7a8f25054508fa61e3837581563833748000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855 2019-07-22 17:15:48 -0500db9f32467f1f0d7cd7a8f25054508fa61e383758Removing gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editclubb_api_module.F90gmres_wrap.F90gmres_cache.F90csr_matrix_module.F90427b92e4f01613d6f91ab932b002d7524a4a69fe1563838713000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855 2019-07-22 18:38:33 -0500427b92e4f01613d6f91ab932b002d7524a4a69feForgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855deletecsr_matrix_module.F90deletegmres_wrap.F90deletegmres_cache.F90advance_clubb_core_module.F90parameters_tunable.F90stats_variables.F90stats_zm_module.F90parameter_indices.F902d454818095f731d3864a0438459c86fc6bc48e41563920145000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnissue #842 We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. Also, tau_wp2_zm and tau_xp2_zm are added in output list. 2019-07-23 17:15:45 -05002d454818095f731d3864a0438459c86fc6bc48e4issue #842editadvance_clubb_core_module.F90editparameters_tunable.F90editstats_variables.F90editstats_zm_module.F90editparameter_indices.F90advance_clubb_core_module.F90stats_zm_module.F90parameters_tunable.F90stats_variables.F90parameter_indices.F90ea09dc1146deb9249293bae86a80288eb8cf98ce1563986631000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. Also, tau_wp2_zm and tau_xp2_zm are added in output list. issue #842 2019-07-24 11:43:51 -0500ea09dc1146deb9249293bae86a80288eb8cf98ceWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.editadvance_clubb_core_module.F90editparameter_indices.F90editstats_zm_module.F90editparameters_tunable.F90editstats_variables.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F90parameters_tunable.F90e3ffdf57d28b9601a073195721f51f94b85ef2cd1563986774000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842) 2019-07-24 11:46:14 -0500e3ffdf57d28b9601a073195721f51f94b85ef2cdWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)editadvance_clubb_core_module.F90editstats_variables.F90editstats_zm_module.F90editparameters_tunable.F90advance_clubb_core_module.F905e7fdb331acf7bb7b479c37b1195df9b3acefc9f1563988934000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 Correct my accidental deletion 2019-07-24 12:22:14 -05005e7fdb331acf7bb7b479c37b1195df9b3acefc9fUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90mixing_length.F90advance_clubb_core_module.F90b3c3dc624ed09e4b8021ff3fd7596a9603e6b2911564098351000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly) 2019-07-25 18:45:51 -0500b3c3dc624ed09e4b8021ff3fd7596a9603e6b291We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)editmixing_length.F90editadvance_clubb_core_module.F90mono_flux_limiter.F90185f2febb78c667d4bd6d22da4400587abf873d91564166838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduEfficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855 2019-07-26 13:47:18 -0500185f2febb78c667d4bd6d22da4400587abf873d9Efficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855editmono_flux_limiter.F90mono_flux_limiter.F904e11b0aaa1aac032723d34da281c8604363d37d41564427207000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855 2019-07-29 14:06:47 -05004e11b0aaa1aac032723d34da281c8604363d37d4This should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855editmono_flux_limiter.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F9011e94b26a81887e767bbe3088dcf879951147d8d1564427709000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnAn additional damping is added to the invrs_tau term in the C8 equation. ticket #842 invrs_tau_wp3_zm = invrs_tau_wp2_zm & + C_invrs_tau_N2_clear_wp3 * sqrt( max( zero_threshold, & zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) ) ) & * min(one, max(zero_threshold, one & - ( (ice_supersat_frac_zm - 0.005_core_rknd )/(0.01- 0.005_core_rknd) ) ) ) C_invrs_tau_N2_clear_wp3 is tunable with its defalut value of 0. 2019-07-29 14:15:09 -050011e94b26a81887e767bbe3088dcf879951147d8dAn additional damping is added to the invrs_tau term in the C8 equation. ticket #842editadvance_clubb_core_module.F90editparameters_tunable.F90editparameter_indices.F90mono_flux_limiter.F9026d56dd9fc34a7a2c2a75531877ce80e5d0dfdd41564431150000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations. 2019-07-29 15:12:30 -050026d56dd9fc34a7a2c2a75531877ce80e5d0dfdd4Adding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations.editmono_flux_limiter.F90advance_clubb_core_module.F90stats_zm_module.F90stats_variables.F902b595277fc89333b4662fbe5f8ad42cf85f609e71564532469000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8. Tau_wp3_zm is added in output list. Ticket #842 2019-07-30 19:21:09 -05002b595277fc89333b4662fbe5f8ad42cf85f609e7We use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8.editadvance_clubb_core_module.F90editstats_zm_module.F90editstats_variables.F90adg1_adg2_3d_luhar_pdf.F9080905eb2df7a944184abc1c502abe3ce7555da7e1564601051000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855 2019-07-31 14:24:11 -050080905eb2df7a944184abc1c502abe3ce7555da7eChanging ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90calc_pressure.F907d01c3630acdd2ca14d9201b66aff0d81502d05f1564611614000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855 2019-07-31 17:20:14 -05007d01c3630acdd2ca14d9201b66aff0d81502d05fPulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855editcalc_pressure.F90adg1_adg2_3d_luhar_pdf.F90a60a7deb0a1df72dfa3601a043b4ddb001daab2c1564611783000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855 2019-07-31 17:23:03 -0500a60a7deb0a1df72dfa3601a043b4ddb001daab2cRenaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855editadg1_adg2_3d_luhar_pdf.F90pdf_closure_module.F90915547ce2354ea058ecb18b93ef84775bc2e17eb1564696319000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduEfficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855. 2019-08-01 16:51:59 -0500915547ce2354ea058ecb18b93ef84775bc2e17ebEfficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855.editpdf_closure_module.F90pdf_closure_module.F901f578b33392b16cfa7367aa6a114c1f7352d984e1564708347000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855 2019-08-01 20:12:27 -05001f578b33392b16cfa7367aa6a114c1f7352d984eModifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855editpdf_closure_module.F90advance_xm_wpxp_module.F904504e3baf5bf7fec8011d83e2d8656712d9946071565219850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855 2019-08-07 18:17:30 -05004504e3baf5bf7fec8011d83e2d8656712d994607Refactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90eb88df13288af2a9454f5d34f20fdda75b3ac19e1565303811000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-08-08 17:36:51 -0500eb88df13288af2a9454f5d34f20fdda75b3ac19eUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F9062f72f15b94edb88e01a1bd031faa32e321edbf11565303976000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-08-08 17:39:36 -050062f72f15b94edb88e01a1bd031faa32e321edbf1Update advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90model_flags.F90advance_helper_module.F90ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f061565382207000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI switched on direct diagnosis of tau rather than Lscale. That is, I set l_diag_Lscale_from_tau = .true. Thus, this commit is BIT_CHANGING. Because diagnosing tau changes answers, I retuned CLUBB, taking the opportunity to add some features seem better justified. For instance, we now damp wp2 using tke (l_damp_wp2_using_em = .true.) because doing so is more standard in turbulence modeling and because it may help reduce damping on Sc clouds. C7 is allowed to become larger in statically stable layers (l_use_C7_Richardson = .true.) because that is what the LES of Heinze show, and because doing so might help limit gravity waves above cloud. Many parameters have been retuned. I set C2rtthl = C2rt = C2thl because it seems more justifiable and because doing so produces the correct sign of wprtp_bp in Cu layers. Also, the "b" parameters have been set equal to the non-"b" parameters in order to reduce the number of tunable parameters. The "b" parameters were based on skewness, which is hard to control and tune. Instead, with this revised version, the tuning parameters are based mostly on thlm, which is more robust. I set C15=0 because this term is complex and hard to justify. c_K8 was increased because it smooths the solutions without dominating the wp3 budget. beta was reduced in order to make wp2xp larger and wpxp2 smaller. I included a bug fix to Cx_fnc_Richardson, which prevents C7 and C11 from exceeding the maximum set by Cx_max. The brunt vaisala frequency is reduced for slightly stable layers in order to allow Sc layers to remain well mixed. Further tuning is needed to reduce oscillations and temporal noise. Also, the momentum fields --- upwp, vpwp, up2, and vp2 --- need to be retuned. Otherwise, the results are comparable to the prior default. We're expecting a speed-up of 10% to 15% because computing CLUBB's mixing length directly is so costly. For #842. 2019-08-09 15:23:27 -0500ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f06I switched on direct diagnosis of tau rather than Lscale.editadvance_clubb_core_module.F90editmodel_flags.F90editadvance_helper_module.F90calc_pressure.F90a3f5913c59b8c599216b06beb6650b779783f0d11565627451000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the pressure initialization for cases that use sounding that is given in terms of pressure coordinates so that the initial profile of pressure is consistent with the pressure update code. This code is BIT_CHANGING for cases that use pressure coordinates in their soundings (MC3E, TWP-ICE, and the CGILS cases). 2019-08-12 11:30:51 -0500a3f5913c59b8c599216b06beb6650b779783f0d1I updated the pressure initialization for cases that use sounding that is giveneditcalc_pressure.F90calc_pressure.F90e573fabcb13ba98b412ce4ce75ade6b6f2ec50631565639019000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the function calculate_thvm from a pre-defined vector of size nz to an elemental function. The results in GrADS output files from this revision are an exact match to the result in GrADS output files from the previous revision for all cases. A quick test of running BOMEX 5 times both before and after the changes showed a 1.16% speed increase for the new version with the elemental function. 2019-08-12 14:43:39 -0500e573fabcb13ba98b412ce4ce75ade6b6f2ec5063I changed the function calculate_thvm from a pre-defined vector of size nz toeditcalc_pressure.F90advance_clubb_core_module.F9051a86a3f221fffeef2d437cbe76a1445816cc3b21565640439000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the calculation of thvm in advance_clubb_core to use the calculate_thvm function. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-08-12 15:07:19 -050051a86a3f221fffeef2d437cbe76a1445816cc3b2I updated the calculation of thvm in advance_clubb_core to use theeditadvance_clubb_core_module.F90stats_variables.F909a3e6d37f6350cfbe66595183c646941b367559e1565650355000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler. 2019-08-12 17:52:35 -05009a3e6d37f6350cfbe66595183c646941b367559eAdding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler.editstats_variables.F90advance_xp2_xpyp_module.F90973528097e0ce042fbd3820dc7fef4bab9d930f51565657839000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855 2019-08-12 19:57:19 -0500973528097e0ce042fbd3820dc7fef4bab9d930f5Adding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855editadvance_xp2_xpyp_module.F90setup_clubb_pdf_params.F908e208d5eb9ed5621198bc25ed7ce599b6fd3b32c1565813536000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626 2019-08-14 15:12:16 -05008e208d5eb9ed5621198bc25ed7ce599b6fd3b32cChanging where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626editsetup_clubb_pdf_params.F90adg1_adg2_3d_luhar_pdf.F9041a78a1c734861469e5bcd2469a6f150563b56e61565886799000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a test where I changed subroutine ADG1_w_closure from using nested where statements to using if statements within the context of an elemental subroutine. My notes are below: =============================================================================== Here's an intriguing idea to try in place of nested "where" statements. The article at: https://data-science-austria.at/2018/12/24/the-need-for-speed-part-2-c-vs-fortran-vs-c/ says that using FORTRAN ELEMENTAL subroutines and functions is just as fast as using FORTRAN serial loops with -O3 optimization (which is what we've been doing for optimization). The use of elemental subprograms contains many advantages: 1) The subprogram becomes much more versatile, because it can be used for scalars as well as arrays of varying sizes and dimensions. 2) In our case, the changesets become easier to follow, as they are basically a change from where statements to if ... then statements. There are no additional do loops and loop indices needed. These additional statements and indices can be confusing when comparing code differences and they clutter-up (a.k.a. uglify) subprograms. 3) The article states that this method should be just as fast for vectors of size 1000 and less. For CLUBB, this would be the number of height levels, which don't normally exceed 128. I tested the old version (where statements) and the new version for multiple runs of BOMEX and ARM, and the timings were equivalent. 4) This avoids the problem of code entering the portion of a "where" statement that it shouldn't be and crashing when floating point trapping is enabled. The use of elemental subprograms has the following limitations: 1) All input and output variables must be of the same size and dimension. In other words, whatever code is calling the elemental subroutine must feed it, as well as take as output, either all scalar values, or all vectors of size nz, or all 2-D arrays of size nx by ny, etc. 2) Elemental subprograms are also pure subprograms, so they have all the restrictions of pure subprograms (no print statements, etc.). ================================================================================ The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Obligatory Larson Group GitHub Issue Reference: #859. 2019-08-15 11:33:19 -050041a78a1c734861469e5bcd2469a6f150563b56e6I am committing a test where I changed subroutine ADG1_w_closureeditadg1_adg2_3d_luhar_pdf.F90advance_xp2_xpyp_module.F9002066c0bf79abbe15aac432b24aee2a17798b09d1566416566000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862 2019-08-21 14:42:46 -050002066c0bf79abbe15aac432b24aee2a17798b09dChanging determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862editadvance_xp2_xpyp_module.F90pdf_closure_module.F90e7c7ca60b79b960a8d9b457dd866359044bb23ce1566428123000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFinally fixing line length error in pdf_closure 2019-08-21 17:55:23 -0500e7c7ca60b79b960a8d9b457dd866359044bb23ceFinally fixing line length error in pdf_closureeditpdf_closure_module.F90lapack_interfaces.F90matrix_operations.F90lapack_wrap.F903cdd4d6ac73bb48c637368df6ac83377017914ac1566603423000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861 2019-08-23 18:37:03 -05003cdd4d6ac73bb48c637368df6ac83377017914acAdding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861addlapack_interfaces.F90editmatrix_operations.F90editlapack_wrap.F90advance_xm_wpxp_module.F90feb1fe6742605fd9d6c20e12ee69991b52ed0b541567019770000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862 2019-08-28 14:16:10 -0500feb1fe6742605fd9d6c20e12ee69991b52ed0b54Adding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90stats_zm_module.F90parameters_tunable.F90parameter_indices.F90advance_xm_wpxp_module.F90advance_helper_module.F90f165ae4ca0cd02d825c185eaba700b0c6c715fd91567811198000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduThis commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc. Some other changes were made in this commit. They are 1) we modified subroutine calc_brunt_vaisala_freq_sqd by adding brunt_vaisala_freq_sqd_mixed, although brunt_vaisala_freq_sqd_dry is still used as default. 2) cloud fracting was considered in brunt_vaisala_freq_sqd as well as compute_Cx_Fnc_Richardson. 3) C_invrs_tau_N2_wpxp was added as a new parameter. 2019-09-06 18:06:38 -0500f165ae4ca0cd02d825c185eaba700b0c6c715fd9This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.editadvance_clubb_core_module.F90editadvance_helper_module.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90editparameters_tunable.F90editparameter_indices.F90advance_helper_module.F90ac210548b0f17a1dfab455f9b1d46e6011af8e651567963574000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_helper_module.F90 2019-09-08 12:26:14 -0500ac210548b0f17a1dfab455f9b1d46e6011af8e65Update advance_helper_module.F90editadvance_helper_module.F90advance_clubb_core_module.F9061228ff386d06aedecc69fb4797122fc3b1dc52a1567963704000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_clubb_core_module.F90 2019-09-08 12:28:24 -050061228ff386d06aedecc69fb4797122fc3b1dc52aUpdate advance_clubb_core_module.F90editadvance_clubb_core_module.F90advance_helper_module.F909c87ac3db2fa3a072b024b295dbb2931961e256e1568044019000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate advance_helper_module.F90 Fixed a typo which cause a fail in Uninitialized Variables Test. 2019-09-09 10:46:59 -05009c87ac3db2fa3a072b024b295dbb2931961e256eUpdate advance_helper_module.F90editadvance_helper_module.F90parameters_tunable.F90c11c7882e433749159918d89176c892aa53b823e1568049431000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626 2019-09-09 12:17:11 -0500c11c7882e433749159918d89176c892aa53b823eAdding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626editparameters_tunable.F90new_hybrid_pdf.F9074b922513308db7dc1355a55eb6c90974943d1701568667521000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a file for the new hybrid PDF, which combines the w equation set from the new PDF (setter variable) and an equation set for the responder variables similar to what is used for ADG1. 2019-09-16 15:58:41 -050074b922513308db7dc1355a55eb6c90974943d170I am adding a file for the new hybrid PDF, which combines the w equation setaddnew_hybrid_pdf.F90new_hybrid_pdf.F906ae78a67f971b37c6fdf70999e812c2cbba564371568672384000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the function to calculate the implicit coefficient for the wp4 term, as well as added the function to calculate the implicit coefficient for the wp2xp terms for the new hybrid PDF. 2019-09-16 17:19:44 -05006ae78a67f971b37c6fdf70999e812c2cbba56437I updated the function to calculate the implicit coefficient for the wp4 term,editnew_hybrid_pdf.F90new_hybrid_pdf.F901cfb74544fc88bd03f57c8764ce100ee8a0651ea1568729503000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made some changes to new_hybrid_pdf.F90 so that it would compile in its current state. 2019-09-17 09:11:43 -05001cfb74544fc88bd03f57c8764ce100ee8a0651eaI made some changes to new_hybrid_pdf.F90 so that it would compile in itseditnew_hybrid_pdf.F90new_hybrid_pdf.F909636e0e0bb6f1d6447761880fbbb34a0b69365ce1568744001000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI edited that subroutine that calculates the implicit coefficient and explicit term for the xp2 equation (wpxp2 term) for the new hybrid PDF. 2019-09-17 13:13:21 -05009636e0e0bb6f1d6447761880fbbb34a0b69365ceI edited that subroutine that calculates the implicit coefficient and expliciteditnew_hybrid_pdf.F90new_hybrid_pdf.F9091d3418f0eb9a96a0dabdac245bf463212f0bec61568758968000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the subroutine that calculates the implicit coefficient and explicit term for the wpxpyp term in the xpyp predictive equation for the new hybrid PDF. 2019-09-17 17:22:48 -050091d3418f0eb9a96a0dabdac245bf463212f0bec6I updated the subroutine that calculates the implicit coefficient and expliciteditnew_hybrid_pdf.F90stats_variables.F90stats_lh_zt_module.F90stats_zt_module.F909b7da5ab8f5fcef54a61b7174324e236c012f9971568990372000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduReplaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves. see #867 2019-09-20 09:39:32 -05009b7da5ab8f5fcef54a61b7174324e236c012f997Replaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves.editstats_variables.F90editstats_zt_module.F90editstats_lh_zt_module.F90new_hybrid_pdf_main.F90b535997cda4d30fb1751ebc4ba76d412462755031569341507000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the new hybrid PDF. 2019-09-24 11:11:47 -0500b535997cda4d30fb1751ebc4ba76d41246275503I am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the newaddnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F90d03f5db1bbbb97e9db44aecd763d9de81c7cd8411569521049000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI worked more the functions for the new hybrid PDF. 2019-09-26 13:04:09 -0500d03f5db1bbbb97e9db44aecd763d9de81c7cd841I worked more the functions for the new hybrid PDF.editnew_hybrid_pdf_main.F90advance_xp2_xpyp_module.F903b3fa0f343d8202f19fe1f3e4f480f9efca0eae11570226820000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855 2019-10-04 17:07:00 -05003b3fa0f343d8202f19fe1f3e4f480f9efca0eae1Refactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855editadvance_xp2_xpyp_module.F90pdf_utilities.F90setup_clubb_pdf_params.F907b4d6d73b34681ce3ebb3b2133a1b417178b882c1570539011000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed all the PDF utility functions in pdf_utilities.F90 to elemental functions. 2019-10-08 07:50:11 -05007b4d6d73b34681ce3ebb3b2133a1b417178b882cI changed all the PDF utility functions in pdf_utilities.F90 to elementaleditsetup_clubb_pdf_params.F90editpdf_utilities.F90pdf_utilities.F90fc7dd9a9251d4862a924755633e0242aaca241411570541067000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot a "then" to go with an "elseif". 2019-10-08 08:24:27 -0500fc7dd9a9251d4862a924755633e0242aaca24141I forgot a "then" to go with an "elseif".editpdf_utilities.F90advance_xp2_xpyp_module.F9009460e50e11427c81d50af8196badfb77207e2871570570170000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855 2019-10-08 16:29:30 -050009460e50e11427c81d50af8196badfb77207e287Adding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90a6bf3fc74cfad569977dc2740bedeca0d63737c01570579988000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855 2019-10-08 19:13:08 -0500a6bf3fc74cfad569977dc2740bedeca0d63737c0Adding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855editadvance_xp2_xpyp_module.F90advance_xm_wpxp_module.F904e3165fe96a6b2071a388b787d2159b326a523981570831072000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRefactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855 2019-10-11 16:57:52 -05004e3165fe96a6b2071a388b787d2159b326a52398Refactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855editadvance_xm_wpxp_module.F90new_hybrid_pdf_main.F909e77b1ad9feb229702bb7d2618aa870e8ca0476f1571148245000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to build the driver subroutine for the new hybrid PDF. 2019-10-15 09:04:05 -05009e77b1ad9feb229702bb7d2618aa870e8ca0476fI am continuing to build the driver subroutine for the new hybrid PDF.editnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F902636b911d7c0ada3c7e221d34684aa2a9a6793d51571244715000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am continuing to work on the driver file for the new hybrid PDF. 2019-10-16 11:51:55 -05002636b911d7c0ada3c7e221d34684aa2a9a6793d5I am continuing to work on the driver file for the new hybrid PDF.editnew_hybrid_pdf_main.F90new_hybrid_pdf_main.F9019bfff3f4f90144b30c8143fb4fe50d5d8085c5a1571316332000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the main parts of the driver subroutine for the new hybrid PDF. 2019-10-17 07:45:32 -050019bfff3f4f90144b30c8143fb4fe50d5d8085c5aI have completed the main parts of the driver subroutine for the new hybrid PDF.editnew_hybrid_pdf_main.F90pdf_parameter_module.F90new_hybrid_pdf_main.F90363763a4cf6fd7200c76a6da2d71925fec4cbfa01571324271000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe code for the new hybrid PDF now compiles. 2019-10-17 09:57:51 -0500363763a4cf6fd7200c76a6da2d71925fec4cbfa0The code for the new hybrid PDF now compiles.editnew_hybrid_pdf_main.F90editpdf_parameter_module.F90pdf_closure_module.F90bd601ca08c9f0daeb8fa98f4579d7150bea6d3811571324344000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added an entry for the new hybrid PDF. 2019-10-17 09:59:04 -0500bd601ca08c9f0daeb8fa98f4579d7150bea6d381I added an entry for the new hybrid PDF.editpdf_closure_module.F90new_hybrid_pdf_main.F90new_hybrid_pdf.F9079f0955fbe6e20587d26ad6b920154b075ef784f1571339325000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the new hybrid PDF to the G unit tests. 2019-10-17 14:08:45 -050079f0955fbe6e20587d26ad6b920154b075ef784fI have added the new hybrid PDF to the G unit tests.editnew_hybrid_pdf_main.F90editnew_hybrid_pdf.F90new_hybrid_pdf.F90b222dcbc135f4e89df4cfff38be930d9e8772b3b1571345095000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0. Numerically, this can happen when numerical round-off error causes epsilon-sized negative values. When this happens, reset the PDF component variance to 0. 2019-10-17 15:44:55 -0500b222dcbc135f4e89df4cfff38be930d9e8772b3bMathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0.editnew_hybrid_pdf.F90advance_clubb_core_module.F90pdf_closure_module.F90variables_prognostic_module.F908cfdc21a73477317533a6323d7bb6ffdd4a177f71571416566000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added code to interface the call to the new hybrid PDF with pdf_closure and have fed the necessary variables in from advance_clubb_core. 2019-10-18 11:36:06 -05008cfdc21a73477317533a6323d7bb6ffdd4a177f7I added code to interface the call to the new hybrid PDF with pdf_closureeditpdf_closure_module.F90editvariables_prognostic_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F902b6ff6cccdbc1d75702d531d5bd62cd5aef226c91571530046000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI interfaced the implicit coefficients and explicit terms used in the turbulent advection code for the new hybrid PDF. The PDF can now be run interactively for wp3, all wpxp (wprtp, wpthlp, upwp, vpwp, and wpsclrp), rtp2, thlp2, and rtpthlp. 2019-10-19 19:07:26 -05002b6ff6cccdbc1d75702d531d5bd62cd5aef226c9I interfaced the implicit coefficients and explicit terms used in the turbulenteditadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90advance_xp2_xpyp_module.F90e2bbcece49c6eb70c16dfdd66522d1fea66a48b71571530362000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a small error. The code compiles again now. 2019-10-19 19:12:42 -0500e2bbcece49c6eb70c16dfdd66522d1fea66a48b7I fixed a small error. The code compiles again now.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90e19fe081dc9086a2fb47598e9e7e19187c1b4c8f1571936471000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduUpdated the larson-group.com urls to http://carson.math.uwm.edu/larson-group 2019-10-24 12:01:11 -0500e19fe081dc9086a2fb47598e9e7e19187c1b4c8fUpdated the larson-group.com urls to http://carson.math.uwm.edu/larson-groupeditadvance_clubb_core_module.F90advance_clubb_core_module.F90a1c0be95241fc9ce40fe7f9bc8e07607a6a1042d1571956527000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added code that allows CLUBB to run interactively using the new hybrid PDF. 2019-10-24 17:35:27 -0500a1c0be95241fc9ce40fe7f9bc8e07607a6a1042dI have added code that allows CLUBB to run interactively using the new hybrideditadvance_clubb_core_module.F90setup_clubb_pdf_params.F90c5a755bba80851cbaca3a58c3768f018a87113d11572019637000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the subroutine that calculates PDF component means and standard deviations for hydrometeors. I am restoring it to its former glory (before where statements or pushed down loops), but I am turning it into an elemental subroutine. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-25 11:07:17 -0500c5a755bba80851cbaca3a58c3768f018a87113d1I am updating the subroutine that calculates PDF component means and standardeditsetup_clubb_pdf_params.F90advance_clubb_core_module.F906486d4621e9999dc5c5fbb71b6ec4262bfc82a2e1572033711000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed proper thresholding on interpolated up2 and interpolated vp2 before the call to PDF closure. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-25 15:01:51 -05006486d4621e9999dc5c5fbb71b6ec4262bfc82a2eI placed proper thresholding on interpolated up2 and interpolated vp2editadvance_clubb_core_module.F90new_hybrid_pdf_main.F90f66969bf1e01403e7e4694e1d11209af057162f21572039684000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a limiter to keep the maximum magnitude of the correlations of fluxes to have a upper limit of max_mag_correlation_flux (which is the limit these correlations should have anyway). 2019-10-25 16:41:24 -0500f66969bf1e01403e7e4694e1d11209af057162f2I added a limiter to keep the maximum magnitude of the correlations ofeditnew_hybrid_pdf_main.F90setup_clubb_pdf_params.F90Nc_Ncn_eqns.F90d647c75c8a71abcbf4c990562dd33bd13000d9581572096033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI upgraded Nc_Ncn_eqns.F90 to use elemental functions. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2019-10-26 08:20:33 -0500d647c75c8a71abcbf4c990562dd33bd13000d958I upgraded Nc_Ncn_eqns.F90 to use elemental functions.editsetup_clubb_pdf_params.F90editNc_Ncn_eqns.F90setup_clubb_pdf_params.F900bbfad6256a0124264bbe3ce79762551170e719b1572097496000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe new hybrid PDF also uses this bit of code that sets the correlation of w and chi, as well as the correlation of w and eta, to 0 for use in the correlation arrays to obey PDF standards. 2019-10-26 08:44:56 -05000bbfad6256a0124264bbe3ce79762551170e719bThe new hybrid PDF also uses this bit of code that sets the correlationeditsetup_clubb_pdf_params.F90pdf_closure_module.F90new_hybrid_pdf_main.F904b682669ee973988cfa6434f90837f1aa428ea111572357782000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made modifications to the new hybrid PDF so that that calculation of F_w temporarily becomes more ADG1/sigma_sqd_w-like. I also set sigma_sqd_w to 1 - F_w when the new hybrid PDF is used so that the calculation of skewness of responder variables becomes more consistent with F_w and the new hybrid PDF. 2019-10-29 09:03:02 -05004b682669ee973988cfa6434f90837f1aa428ea11I made modifications to the new hybrid PDF so that that calculation of F_weditpdf_closure_module.F90editnew_hybrid_pdf_main.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90pdf_closure_module.F90pdf_parameter_module.F90new_hybrid_pdf_main.F90new_pdf_main.F90variables_prognostic_module.F90b401721c1caf94bec4ca3a07a63d748967c9ecc61572467624000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the ability to handle scalars interactively to the new hybrid PDF. 2019-10-30 15:33:44 -0500b401721c1caf94bec4ca3a07a63d748967c9ecc6I added the ability to handle scalars interactively to the new hybrid PDF.editnew_hybrid_pdf_main.F90editvariables_prognostic_module.F90editnew_pdf_main.F90editpdf_parameter_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editpdf_closure_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90new_hybrid_pdf.F90a775bd9a19e95bc9df8854fa1348bff049acd7471572471442000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI found a couple of spots in the new hybrid PDF where I needed to add a wp2 > 0 to the conditionals in order to avoid any potential divide-by-zeros. 2019-10-30 16:37:22 -0500a775bd9a19e95bc9df8854fa1348bff049acd747I found a couple of spots in the new hybrid PDF where I needed to addeditnew_hybrid_pdf.F90clubb_api_module.F90916c1f752b8d36ebceae827e7c1ed2dba4acbbef1572475839000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added init_pdf_implicit_coefs_terms_api to clubb_api_module.F90. 2019-10-30 17:50:39 -0500916c1f752b8d36ebceae827e7c1ed2dba4acbbefI added init_pdf_implicit_coefs_terms_api to clubb_api_module.F90.editclubb_api_module.F90clubb_api_module.F90afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da61572559447000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe variable type implicit_coefs_terms needs to be made public so that it is available to host models. 2019-10-31 17:04:07 -0500afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da6The variable type implicit_coefs_terms needs to be made publiceditclubb_api_module.F90new_hybrid_pdf_main.F90e62b062d69789b8034b91fddd0454be4a18f6e621572565760000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the value of the coefficient in the F_w equation to 0.45 because it produces a result that is more similar to ADG1 results for most cases. This is a better spot to start testing, development, and tuning from. 2019-10-31 18:49:20 -0500e62b062d69789b8034b91fddd0454be4a18f6e62I changed the value of the coefficient in the F_w equation to 0.45editnew_hybrid_pdf_main.F90advance_clubb_core_module.F90clubb_api_module.F907a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246c1572707965000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_core and then back in again. They were temporarily being stored through use statements within advance_clubb_core. This does not change results of standalone CLUBB. However, prior to this change, these variables weren't being allocated for host model runs. This was causing a segmentation fault. 2019-11-02 10:19:25 -05007a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246cI am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_coreeditadvance_clubb_core_module.F90editclubb_api_module.F90advance_xp2_xpyp_module.F90e9b085012b811e7726988c0b3bbec21bb064ce111573243077000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have started the process of adding the coding infrastructure for having different up2 and vp2 LHS for the new hybrid PDF. The default ADG1 code remains unchanged. 2019-11-08 13:57:57 -0600e9b085012b811e7726988c0b3bbec21bb064ce11I have started the process of adding the coding infrastructureeditadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F90f48d9abfdfb56389af74f9542a229864cee47ac61573311461000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the addition of the ability to use different up2 and vp2 LHS for the new hybrid PDF. The default ADG1 PDF remains unaffected by these changes. 2019-11-09 08:57:41 -0600f48d9abfdfb56389af74f9542a229864cee47ac6I have completed the addition of the ability to use different up2editadvance_xp2_xpyp_module.F90parameters_tunable.F90model_flags.F90clubb_api_module.F906fa1cf9c290c207154a211f5fc860668576181d61573594095000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856 2019-11-12 15:28:15 -06006fa1cf9c290c207154a211f5fc860668576181d6I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856editclubb_api_module.F90editmodel_flags.F90editparameters_tunable.F90setup_clubb_pdf_params.F90a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed761573597176000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made the l_calc_w_corr code (turned off by default) run again by changing subroutine calc_corr_w_hm_n to an elemental subroutine. Previously, runtime exceptions were found within the "where" statements. 2019-11-12 16:19:36 -0600a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed76I made the l_calc_w_corr code (turned off by default) run again byeditsetup_clubb_pdf_params.F90model_flags.F90f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860d1573750479000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute. This is done in preparation for the introduction of the 'clubb_config_flags_type'. #856 2019-11-14 10:54:39 -0600f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860dI added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.editmodel_flags.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90780fe29dcb36ae1ec349ba5c65f090059f2036851573771919000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac', 'l_min_wp2_from_corr_wx', and 'l_min_xp2_from_corr_wx' covered. #856 2019-11-14 16:51:59 -0600780fe29dcb36ae1ec349ba5c65f090059f203685I have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac',editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90mean_adv.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F9037be56d2a4b786d7f12ddd69516cb4352ada61991573842974000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm', 'l_upwind_wpxp_ta', 'l_upwind_xpyp_ta', 'l_upwind_xm_ma'. #856 2019-11-15 12:36:14 -060037be56d2a4b786d7f12ddd69516cb4352ada6199I continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm',editmono_flux_limiter.F90editadvance_clubb_core_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editmean_adv.F90editadvance_xm_wpxp_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F909b71f7dbb101e9db7cc9806b71a84163a7ea74f81573859283000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm', 'l_call_pdf_closure_twice', 'l_use_cloud_cover', 'l_stability_correct_tau_zm', 'l_damp_wp2_using_em', 'l_do_expldiff_rtm_thlm', 'l_Lscale_plume_centered', 'l_diag_Lscale_from_tau', 'l_use_ice_latent', 'l_use_C7_Richardson', 'l_use_C11_Richardson', 'l_rcm_supersat_adj', 'l_damp_wp3_Skw_squared', and 'l_prescribed_avg_deltaz'. #856 2019-11-15 17:08:03 -06009b71f7dbb101e9db7cc9806b71a84163a7ea74f8I continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm',editmixing_length.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clip_explicit.F90advance_xm_wpxp_module.F90output_netcdf.F90sigma_sqd_w_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F9063bfc28d22b334b76ebb1e8fe547ebe81c3df81a1574362548000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp', 'l_tke_aniso', 'l_standard_term_ta', 'l_brunt_vaisala_freq_moist', 'l_use_thvm_in_bv_freq', and 'l_single_C2_Skw'. #856 2019-11-21 12:55:48 -060063bfc28d22b334b76ebb1e8fe547ebe81c3df81aI continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp',editadvance_clubb_core_module.F90editsigma_sqd_w_module.F90editclip_explicit.F90editsetup_clubb_pdf_params.F90editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90editoutput_netcdf.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90output_netcdf.F90diagnose_correlations_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F903d7dd80beb0c24b1cb5ceac4a565ae6f13fd80041574381544000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduFinished altering argument lists. This commit covers the final seven flags, which are in different namelists. This includes 'l_calc_thlp2_rad', 'l_uv_nudge', 'l_rtm_nudge', 'l_diagnose_correlations', 'l_calc_w_corr', 'l_const_Nc_in_cloud', and 'l_fix_w_chi_eta_correlations'. #856 2019-11-21 18:12:24 -06003d7dd80beb0c24b1cb5ceac4a565ae6f13fd8004Finished altering argument lists. This commit covers the final seven flags, which are in different namelists.editadvance_clubb_core_module.F90editsetup_clubb_pdf_params.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editoutput_netcdf.F90editstats_clubb_utilities.F90editdiagnose_correlations_module.F90model_flags.F90e27846ed5438edd18859a6fa13a44871e0f9dad71574785619000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type. However it is not used by now. #856 2019-11-26 10:26:59 -0600e27846ed5438edd18859a6fa13a44871e0f9dad7I introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type.editmodel_flags.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90parameters_tunable.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90corr_varnce_module.F90976026d16da3de89e4899700ff544352f642a3981576018347000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856 2019-12-10 16:52:27 -0600976026d16da3de89e4899700ff544352f642a398I enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856editsetup_clubb_pdf_params.F90editcorr_varnce_module.F90editmodel_flags.F90editparameters_tunable.F90editclubb_api_module.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90cd4f009eb87b05355ab501f2a1e7c7666bcfea7a1576263181000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI fed pdf_params_frz into subroutine advance_clubb_core via a use statement. Doing so avoids a seg fault with l_use_ice_latent = .true. Results are BFB for arm_97. For #871. 2019-12-13 12:53:01 -0600cd4f009eb87b05355ab501f2a1e7c7666bcfea7aI fed pdf_params_frz into subroutine advance_clubb_coreeditadvance_clubb_core_module.F90parameters_tunable.F90advance_clubb_core_module.F90clubb_api_module.F90b7b343873c52f374140f1b829c58798d231047131576288560000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding error code to arguement list of non-api routines where it was included in the api version. 2019-12-13 19:56:00 -0600b7b343873c52f374140f1b829c58798d23104713Adding error code to arguement list of non-api routines where it was included in the api version.editclubb_api_module.F90editparameters_tunable.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90mixing_length.F90clubb_api_module.F903108bbdf54aa0f815048daf566c0015714ec82c11576621906000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal. 2019-12-17 16:31:46 -06003108bbdf54aa0f815048daf566c0015714ec82c1Moving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal.editadvance_clubb_core_module.F90editmixing_length.F90editclubb_api_module.F90clubb_api_module.F900cfd69bf18f68389e4d86b7fac53b3e828e98f8c1576699854000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduAdded use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public. This was done to be able to use the variable in SAM's SGS_CLUBB package. https://github.com/larson-group/clubb/issues/871 2019-12-18 14:10:54 -06000cfd69bf18f68389e4d86b7fac53b3e828e98f8cAdded use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public.editclubb_api_module.F90advance_clubb_core_module.F908105cfd6a2a86d2adf95bfe73e9ee210219dd5801576855679000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI have fixed the warnings for lines exceeding 100 characters. 2019-12-20 09:27:59 -06008105cfd6a2a86d2adf95bfe73e9ee210219dd580I have fixed the warnings for lines exceeding 100 characters.editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90234b88f48750523927211d4908d6ed086592941b1576880962000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPassing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity. 2019-12-20 16:29:22 -0600234b88f48750523927211d4908d6ed086592941bPassing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity.editadvance_clubb_core_module.F90editclubb_api_module.F90parameters_tunable.F9011b379246a683faec006978acd3764328492619f1578600058000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTrivial update to test if cams autoupdate works 2020-01-09 14:00:58 -060011b379246a683faec006978acd3764328492619fTrivial update to test if cams autoupdate workseditparameters_tunable.F90parameters_tunable.F90model_flags.F906b20ec2a88f083ee48eac3e39d0e7f94852afcc71578723242000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch" I am reverting commit da00f00. In that commit, I set some tunable parameters and flags to be consistent with an old version of E3SM-CLUBB-SILHS. However, results from those old cases are hopelessly lost anyway, and we should keep flags and parameters consistent with today's CLUBB. Secondly, the code change in da00f00 is blocking a merge of the modern CLUBB master into this branch. This reverts commit da00f00f1bd353a7e413a738e1424ddddd751a2b. 2020-01-11 00:14:02 -06006b20ec2a88f083ee48eac3e39d0e7f94852afcc7Revert "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch"editmodel_flags.F90editparameters_tunable.F90parameters_tunable.F901b3ce367c1fd861f61265a4b797c300cbf0a016a1579036682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed E3SM preprocessor commands around E3SM-specific code in parameters_tunable.F90. 2020-01-14 15:18:02 -06001b3ce367c1fd861f61265a4b797c300cbf0a016aI placed E3SM preprocessor commands around E3SM-specific code ineditparameters_tunable.F90latin_hypercube_driver_module.F90167b63c98f5944d7d45de97507e8d910b376992c1579122114000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRestoring assertion check for the vertical correlation calculation. larson-group/clubb#869 2020-01-15 15:01:54 -0600167b63c98f5944d7d45de97507e8d910b376992cRestoring assertion check for the vertical correlation calculation. larson-group/clubb#869editlatin_hypercube_driver_module.F90parameters_silhs.F90latin_hypercube_driver_module.F90c927e76c34601e24c555ad799e32bb83e560a0a21579138765000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869 2020-01-15 19:39:25 -0600c927e76c34601e24c555ad799e32bb83e560a0a2Changing the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869editlatin_hypercube_driver_module.F90editparameters_silhs.F90parameters_tunable.F90e6f8822a24416b4d853465f7bd797ea5a8fb92dd1579207489000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added E3SM's clubb_ parameters that can be read in from the E3SM clubb_param_nl namelist that are now found on E3SM's master branch (and weren't previously). This is within the #ifdef E3SM preprocessor directive and won't affect CLUBB except in the context of E3SM. 2020-01-16 14:44:49 -0600e6f8822a24416b4d853465f7bd797ea5a8fb92ddI added E3SM's clubb_ parameters that can be read in from theeditparameters_tunable.F90parameters_tunable.F9001cd689e03930500afd5a99d8b980dbf78b4bc2b1579215203000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the remainder the clubb_ terms that were added previously to the zhun/atm/clubb_silhs_v2 branch of the UWM E3SM repository. This only affects code in the #ifdef E3SM preprocessor flag. 2020-01-16 16:53:23 -060001cd689e03930500afd5a99d8b980dbf78b4bc2bI added the remainder the clubb_ terms that were added previously toeditparameters_tunable.F90latin_hypercube_driver_module.F9027ac5d4ef6f344b80445522f9e313392896a24951579642680000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869 2020-01-21 15:38:00 -060027ac5d4ef6f344b80445522f9e313392896a2495Changing error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869editlatin_hypercube_driver_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b6025d4bae73e4715cd9ba9d404464f8daae4c4e1579714696000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869 2020-01-22 11:38:16 -0600b6025d4bae73e4715cd9ba9d404464f8daae4c4eSmall updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F905f9e2a7a767c2b2ee554bfccc0c9908d50f4043d1579716158000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRedoing some data directives to only copy data that we need off the device. Data that is needed by assertion checks and stats will be updated conditionally. This will make the code faster when no stats/assertion checks are being done, but slower when it is. This is all bit-for-bit. larson-group/clubb#869 2020-01-22 12:02:38 -06005f9e2a7a767c2b2ee554bfccc0c9908d50f4043dRedoing some data directives to only copy data that we need off the device. Data that is needed by assertion checks and stats will be updated conditionally. This will make the code faster when no stats/assertion checks are being done, but slower when it is. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90transform_to_pdf_module.F901f9d2abc6ca0b7b180c4d0f6f18197c40ef594e11579897098000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869 2020-01-24 14:18:18 -06001f9d2abc6ca0b7b180c4d0f6f18197c40ef594e1Adding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869edittransform_to_pdf_module.F90transform_to_pdf_module.F90c58014f82bae800df319de3edfed14f6d221964f1579899486000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSimple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869 2020-01-24 14:58:06 -0600c58014f82bae800df319de3edfed14f6d221964fSimple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869edittransform_to_pdf_module.F90latin_hypercube_driver_module.F908e5716b6671ee0b87017b2816ab718e90d1bb0281580239752000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. This is all bit-for-bit. larson-group/clubb#869 2020-01-28 13:29:12 -06008e5716b6671ee0b87017b2816ab718e90d1bb028Small performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. This is all bit-for-bit. larson-group/clubb#869editlatin_hypercube_driver_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90faf11c1f824a5fc95ecb21de0a2225ba20036ea61580253302000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving lh_clipped_vars and replacing functionality with arrays. larson-group/clubb#869 2020-01-28 17:15:02 -0600faf11c1f824a5fc95ecb21de0a2225ba20036ea6Removing lh_clipped_vars and replacing functionality with arrays. larson-group/clubb#869editsilhs_api_module.F90editlatin_hypercube_driver_module.F90latin_hypercube_driver_module.F905b5269b0631c07c51addb22c912d77223d3cd0091580414158000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate latin_hypercube_driver_module.F90 2020-01-30 13:55:58 -06005b5269b0631c07c51addb22c912d77223d3cd009Update latin_hypercube_driver_module.F90editlatin_hypercube_driver_module.F90parameters_tunable.F90dfe257f9bd88ba731787533dc5bc35ffb1b87c351580414204000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameters_tunable.F90 2020-01-30 13:56:44 -0600dfe257f9bd88ba731787533dc5bc35ffb1b87c35Update parameters_tunable.F90editparameters_tunable.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b6b18c6a112162a8ef8fbf13aa3478a4b7062d7d1581022293000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduGPUizing clip_transform_silhs_output and pushing data directives up call tree. This is all bit-for-bit. larson-group/clubb#869 2020-02-06 14:51:33 -0600b6b18c6a112162a8ef8fbf13aa3478a4b7062d7dGPUizing clip_transform_silhs_output and pushing data directives up call tree. This is all bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90b7c52042cb960e2a85c4402ec4e1da7791ab56a31581030860000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869 2020-02-06 17:14:20 -0600b7c52042cb960e2a85c4402ec4e1da7791ab56a3Making some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90stats_type_utilities.F90bde68d858a6c622fc6acdd4c2255c6125c632a381581722411000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874 2020-02-14 17:20:11 -0600bde68d858a6c622fc6acdd4c2255c6125c632a38I changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874editstats_type_utilities.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90f4cbd72beba82c17113c6a38d43a72e88bfe2fc51581778729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the new l_update_pressure configurable flag to clubb_config_flags. When this flag is enabled (which it is by default), CLUBB updates pressure and exner every timestep. This new flags allows this feature to easily be turned off within the context of host models, such as CAM and E3SM. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2020-02-15 08:58:49 -0600f4cbd72beba82c17113c6a38d43a72e88bfe2fc5I added the new l_update_pressure configurable flag to clubb_config_flags.editclubb_api_module.F90editadvance_clubb_core_module.F90editmodel_flags.F90new_hybrid_pdf_main.F90a32a63a586047be39f39af42106bfb5f31efb6721582228068000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some code I used in the special input fields branch to make the PDF of w symmetric, so that the PDF at a value of positive skewness of w (for example, +2) looks like a mirror image of the PDF at the opposite value of negative skewness (for example, -2). 2020-02-20 13:47:48 -0600a32a63a586047be39f39af42106bfb5f31efb672I added some code I used in the special input fields branch to makeeditnew_hybrid_pdf_main.F90numerical_check.F909225a01acef12413480c3deb0cc2dfd804127c271584200643000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduAn improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875] 2020-03-14 10:44:03 -05009225a01acef12413480c3deb0cc2dfd804127c27An improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875]editnumerical_check.F90stats_type_utilities.F900dca127542d480d4f81bb75019c575e2b3addf851584204136000http://carson.math.uwm.edu/jenkins/user/nselkenselkenselke@uwm.eduI revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874. 2020-03-14 11:42:16 -05000dca127542d480d4f81bb75019c575e2b3addf85I revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874.editstats_type_utilities.F90variables_prognostic_module.F9064b5afb6666c2d345052d96f8f1d8ae54761daf81584638975000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI got rid of the "allocatable", "allocate", and "deallocate" statements in regards to pdf_params and pdf_params_frz because NCAR could not get CAM to run using the NAG compiler. As it turns out, the code can run on group computers without these statements. 2020-03-19 12:29:35 -050064b5afb6666c2d345052d96f8f1d8ae54761daf8I got rid of the "allocatable", "allocate", and "deallocate" statementseditvariables_prognostic_module.F90error_code.F90279fab75ad386341b7d26f56991681e86ee9eef31584682838000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI placed an ifndef CLUBB_CAM preprocessor flag around the code in error_code.F90 that uses the FORTRAN intrinsic call to getpid(). This causes problems for NCAR when they try to compile CAM using the NAG compiler. 2020-03-20 00:40:38 -0500279fab75ad386341b7d26f56991681e86ee9eef3I placed an ifndef CLUBB_CAM preprocessor flag around the code inediterror_code.F90parameters_tunable.F9025b836771d9185938dffb4327d6444a6e3bcb0051585575594000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI reduced the minimum possible value of lmin from 4.0 to 1.0. This is because Mark Taylor found that for the E3SM model, reducing lmin from 4 to 1 prevents excessive cooling at the surface near Greenland. For more information about this "Tlay" error, see [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1296793934/CLUBB+lmin+coeff+sensitivity?focusedCommentId=1296892065#comment-1296892065) and [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1235255422/Tlay+Error+in+ne256pg2+Runs+cold+temperature+plots). larson-group/climate_process_team#196 2020-03-30 08:39:54 -050025b836771d9185938dffb4327d6444a6e3bcb005I reduced the minimum possible value of lmin from 4.0 to 1.0.editparameters_tunable.F90advance_clubb_core_module.F905a748b32a36b1c101fd9ba323db0a204a96f16ac1585586425000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI made a print/write statement debug level 3 because it was filling up the logs of global CAM and E3SM simulations. For #755 and #800 2020-03-30 11:40:25 -05005a748b32a36b1c101fd9ba323db0a204a96f16acI made a print/write statement debug level 3editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90a050d6abf83b7403c321a47e310b9df7c350e8671585586685000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI made a second print/write statement debug level 3 because it was also filling up the logs of global CAM and E3SM simulations. For #755 and #800. 2020-03-30 11:44:45 -0500a050d6abf83b7403c321a47e310b9df7c350e867I made a second print/write statement debug level 3editadvance_xm_wpxp_module.F90advance_clubb_core_module.F90f1873bdcf6480583a05d39372926472755e0c0551585587118000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@uwm.eduI fix a print/write statement debug level3. For #755 and #800 2020-03-30 11:51:58 -0500f1873bdcf6480583a05d39372926472755e0c055I fix a print/write statement debug level3. For #755 and #800editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90f58158365d6813e0b2ee60497eb0774176abf0641586811945000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am replacing the "use" statements that referenced variables_diagnostic_module from advance_clubb_core and replacing them with local declarations. This requires that some additional variables are passed into and out of advance_clubb_core. Additionally, Lscale is now recalculated outside of advance_clubb_core using TKE and Kh for use in SILHS code. This makes this commit BIT_CHANGING. CLUBB GitHub Issue Reference: #876. 2020-04-13 16:05:45 -0500f58158365d6813e0b2ee60497eb0774176abf064I am replacing the "use" statements that referencededitadvance_clubb_core_module.F90editclubb_api_module.F90advance_clubb_core_module.F90stats_clubb_utilities.F900f67628552092a7d229225bac08badff3b074d621586827490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI "brought back the stats" by passing the stats from advance_clubb_core to stats_accumulate, getting rid of the "use" statements. This commit is BIT_CHANGING, since it changes stats output. 2020-04-13 20:24:50 -05000f67628552092a7d229225bac08badff3b074d62I "brought back the stats" by passing the stats from advance_clubb_coreeditadvance_clubb_core_module.F90editstats_clubb_utilities.F90advance_clubb_core_module.F90dd9ad18fdb32917c840b9406d2ae629f51ff91b91586888964000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref) from subroutine pdf_closure_driver in advance_clubb_core. 2020-04-14 13:29:24 -0500dd9ad18fdb32917c840b9406d2ae629f51ff91b9Removing the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref)editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F907a05c93c702035d8a08b1121d7e927af63e186f31586895654000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduResults were changed yesterday for some cases because thlprcp was no longer being output from advance_clubb_core for use in the calculate_thlp2_rad. This was previously accomplished through a "use" statement. The variable thlprcp is now output through the argument list of advance_clubb_core. This commit is BIT_CHANGING. 2020-04-14 15:20:54 -05007a05c93c702035d8a08b1121d7e927af63e186f3Results were changed yesterday for some cases because thlprcp waseditclubb_api_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F906f41957ecc761aa393647629c997eb41fdb01b581586993873000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have resolved all the issues surrounding recent CLUBB commits that remove "use" statements from the code. The commit 068a7b2 (April 8, 2020) was the commit before these refactorings started. When Lscale, Skw_zm, and thvm are passed out of CLUBB core, the code returns to a bit-for-bit match to commit 068a7b2. However, rather than pass these variables out of advance_clubb_core, it is more convenient to recalculate them locally in clubb_driver. This changes results for (a) SILHS cases, owing to the change to Lscale, and (b) all cases that advance microphysics, owing to the change to Skw_zm. The net result is that this commit is BIT_CHANGING. For cases that advance microphysics and/or use SILHS, the net result is BIT_CHANGING when compared to 068a7b2. For all other cases (BOMEX, etc.), the results are an exact match. It is important to note that host models that use CLUBB (without SILHS) will not be affected by these changes. Host models that use SILHS will only be affected by the change to Lscale. However, this code has already been applied to CAM and E3SM, so the only changes will to SILHS code in SAM and WRF. Larson Group Issue Reference: #876. 2020-04-15 18:37:53 -05006f41957ecc761aa393647629c997eb41fdb01b58I have resolved all the issues surrounding recent CLUBB commits thateditadvance_clubb_core_module.F90output_netcdf.F903603a68adcce4975fbb94a240e11deacf53efe081587852453000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI removed code that stops a run if the output time step is less than a minute. This restriction is unnecessary if netcdf is used as the output file format. 2020-04-25 17:07:33 -05003603a68adcce4975fbb94a240e11deacf53efe08I removed code that stops a run if the output time step is less than a minute.editoutput_netcdf.F90numerical_check.F905249de8f91cd1474ce792ec4c8cd7536491a3c271588201621000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed references to variables_prognostic_module and variables_diagnostic_module from numerical_check.F90. CLUBB GitHub Issue Reference: #876. 2020-04-29 18:07:01 -05005249de8f91cd1474ce792ec4c8cd7536491a3c27I removed references to variables_prognostic_module andeditnumerical_check.F90advance_clubb_core_module.F903b091ac242ff2f9062505f5bff01ead16d7612e01588279420000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a boo-boo. CLUBB GitHub Issue Reference: #876. 2020-04-30 15:43:40 -05003b091ac242ff2f9062505f5bff01ead16d7612e0Fixed a boo-boo.editadvance_clubb_core_module.F90model_flags.F9036fe4d36102c43fa039370832fe42a56ded17dbc1588284059000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI set `l_diag_Lscale_from_tau = .true.` in source code in order to match the value in configurable_model_flags.in. I did so to avoid confusion, but also to check whether doing so will allow the WRF-CLUBB lines nightly plots to better match the CLUBB standalone lines. For larson-group/wrf#105. 2020-04-30 17:00:59 -050036fe4d36102c43fa039370832fe42a56ded17dbcI set `l_diag_Lscale_from_tau = .true.` in source codeeditmodel_flags.F90stats_clubb_utilities.F9029ad608ebd198f28b74757885b31ac09cf6d49891588625963000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed references to variable_diagnostic_module for various Kessler Autoconversion variables that are being output to statistics. CLUBB Git Issue Reference: #876. 2020-05-04 15:59:23 -050029ad608ebd198f28b74757885b31ac09cf6d4989I removed references to variable_diagnostic_module for various Kesslereditstats_clubb_utilities.F90setup_clubb_pdf_params.F90clubb_api_module.F9006e6739507c93d6cc3c2aadb4d262a024b0f3eab1588632211000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the reference to use variables_diagnostic_module for Kh_zm found in setup_clubb_pdf_params.F90. The variable Kh_zm can easily be passed in instead. CLUBB Git Issue Reference: #876. 2020-05-04 17:43:31 -050006e6739507c93d6cc3c2aadb4d262a024b0f3eabI removed the reference to use variables_diagnostic_module for Kh_zmeditsetup_clubb_pdf_params.F90editclubb_api_module.F90diagnose_correlations_module.F906f2f593c5bd5306818c121ecfb043d9fc6687c9a1588635738000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoved a reference to variables_diagnostic_module for Kh_zm in approx_w_corr. I passed the variable in instead. CLUBB Github Issue Reference: #876. 2020-05-04 18:42:18 -05006f2f593c5bd5306818c121ecfb043d9fc6687c9aRemoved a reference to variables_diagnostic_module for Kh_zm ineditdiagnose_correlations_module.F90clubb_api_module.F90efec25c6dc6ff1e4d8a4162088208012a97e00391588637567000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am able to remove references to variables_prognostic_module and variables_diagnostic_module from clubb_api_module. CLUBB GitHub Issue References: #876. 2020-05-04 19:12:47 -0500efec25c6dc6ff1e4d8a4162088208012a97e0039I am able to remove references to variables_prognostic_module andeditclubb_api_module.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90variables_diagnostic_module.F90clubb_api_module.F90variables_prognostic_module.F90752666bf1bdfa947fe94b37b82aa090098df8cc31588697383000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed the l_use_ice_latent flag from the code, and along with it all the _frz variables. The results in GrADS output files from this revision are an exact match to the results in GraDS output files from the previous revision for all cases. CLUBB GitHub Issue Reference: #876. 2020-05-05 11:49:43 -0500752666bf1bdfa947fe94b37b82aa090098df8cc3I removed the l_use_ice_latent flag from the code, and along with iteditadvance_clubb_core_module.F90editmixing_length.F90editmodel_flags.F90editvariables_prognostic_module.F90editclubb_api_module.F90editvariables_diagnostic_module.F90advance_clubb_core_module.F90variables_diagnostic_module.F90clubb_api_module.F90variables_prognostic_module.F90e81b40abf9a543b2a1bc51d8e266903d13a9fc2f1588984893000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have completed the project of removing variables_prognostic_module and variables_diagnostic_module from the CLUBB code. The results in GrADS output files from this revision are an exact match to the results found in GrADS output files from the previous revision for all cases. CLUBB Git Issue Reference: #876. 2020-05-08 19:41:33 -0500e81b40abf9a543b2a1bc51d8e266903d13a9fc2fI have completed the project of removing variables_prognostic_moduleeditadvance_clubb_core_module.F90editclubb_api_module.F90deletevariables_prognostic_module.F90deletevariables_diagnostic_module.F90parameters_tunable.F901bdd34c6481b3c01f82b877f62a93ba370e5b9ed1589154053000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI added some missing threadprivate statements in order to eliminate a warning from the check_for_missing_threadprivate.py script. 2020-05-10 18:40:53 -05001bdd34c6481b3c01f82b877f62a93ba370e5b9edI added some missing threadprivate statementseditparameters_tunable.F90advance_wp2_wp3_module.F90e2826f017c87d3cd240aa7fc22795fe1a4ac161c1589849026000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have taken the code from wp2_term_ta_all and placed it in the subroutine wp2_term_ta. This combines the former, verbose description with the new optimized code. This also eliminates an unused function and gets rid of a compiler warning. 2020-05-18 19:43:46 -0500e2826f017c87d3cd240aa7fc22795fe1a4ac161cI have taken the code from wp2_term_ta_all and placed it in the subroutineeditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90e0d302767e3733455f3dde87b01472c1eb9ee1a61589929080000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating wp3_term_ta_new_pdf_lhs to use the optimized code from wp3_term_ta_new_pdf_lhs_all, and then I am removing wp3_term_ta_new_pdf_lhs_all from the code. This eliminates a compiler error. 2020-05-19 17:58:00 -0500e0d302767e3733455f3dde87b01472c1eb9ee1a6I am updating wp3_term_ta_new_pdf_lhs to use the optimized code fromeditadvance_wp2_wp3_module.F90parameters_tunable.F90df5510e777de2b9360c836491d81db6920bf07be1590592049000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.in 2020-05-27 10:07:29 -0500df5510e777de2b9360c836491d81db6920bf07beThis commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.ineditparameters_tunable.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90249ed5dd4ff58c54c3bcd841658e556f7ee999b31591212970000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the change of using tau_wp2_zm to damp up2 and vp2, rather than tau_xp2_zm, when l_diag_Lscale_from_tau is enabled. The previous code was causing up2 and vp2 to become large and unstable. Additionally, I placed a limiter on tau based on Lscale_max in the CLUBB code for the situation where l_diag_Lscale_from_tau is enabled. This will help constrict tau, and thereby the magnitudes of turbulent fields, in a host model as grid spacing starts to become arbitrarily small and resolved features take over. This revision is BIT_CHANGING. 2020-06-03 14:36:10 -0500249ed5dd4ff58c54c3bcd841658e556f7ee999b3I am making the change of using tau_wp2_zm to damp up2 and vp2,editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90setup_clubb_pdf_params.F90a59618b0d5bb86a20829495f774d7b95b59fa7c01591892411000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the integer flags iiPDF_type and ipdf_call_placement to the clubb_config_flags type. They have also been added to configurable_model_flags.in. The results in GrADS output files from this revision are an exact match to the result in GrADS output files from the previous revision for all cases. 2020-06-11 11:20:11 -0500a59618b0d5bb86a20829495f774d7b95b59fa7c0I have added the integer flags iiPDF_type and ipdf_call_placementeditadvance_clubb_core_module.F90editpdf_closure_module.F90editclubb_api_module.F90editmodel_flags.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editsetup_clubb_pdf_params.F90editadvance_xp2_xpyp_module.F90clubb_api_module.F90935b507b50e147ce7e4cb1aefde6b167312b5aa01591904998000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am going to make primary PDF type options and primary PDF call position options available to host models. 2020-06-11 14:49:58 -0500935b507b50e147ce7e4cb1aefde6b167312b5aa0I am going to make primary PDF type options and primary PDF calleditclubb_api_module.F90mixing_length.F90advance_xp2_xpyp_module.F90stats_clubb_utilities.F90lapack_wrap.F9003a057fc0fa742bf5903cebd6c39a6cabe084a541592253292000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added E3SM customizations to CLUBB's master branch. This is meant for updating CLUBB in the E3SM master branch. 2020-06-15 15:34:52 -050003a057fc0fa742bf5903cebd6c39a6cabe084a54I added E3SM customizations to CLUBB's master branch. This is meanteditlapack_wrap.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editstats_clubb_utilities.F90parameters_tunable.F901d961006eb841164ff42b461bf2cc5465c0fe4de1592499699000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the clubb_ list of namelist parameters used in E3SM to include every parameter that E3SM has customized in CLUBB. The goal is to make it so E3SM does not need to customize the CLUBB side of E3SM-CLUBB at all, making future upgrades easier. 2020-06-18 12:01:39 -05001d961006eb841164ff42b461bf2cc5465c0fe4deI am updating the clubb_ list of namelist parameters used in E3SMeditparameters_tunable.F90parameters_tunable.F903a2dcd52a4c69c428255318e8e22ee90adb7a4911592499991000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTypo 2020-06-18 12:06:31 -05003a2dcd52a4c69c428255318e8e22ee90adb7a491Typoeditparameters_tunable.F90parameters_tunable.F90ca809e21e6bf2df918484017d9126c244003e1ef1592500303000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed more typos 2020-06-18 12:11:43 -0500ca809e21e6bf2df918484017d9126c244003e1efFixed more typoseditparameters_tunable.F90new_hybrid_pdf_main.F9029c5dd3a6fd55e6a294aed63e5e6029810e970fa1592517157000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing the new hybrid PDF's calculation of F_w to use tunable parameter gamma (technically, the gamma_Skw_fnc). In the ADG1 PDF, when gamma_Skw_fnc goes to 0, the standard deviations of w in each PDF component both go to 0, and the spread between the PDF component means of w is at its maximum. When gamma_Skw_fnc goes to 1, the standard deviations of w in each PDF component become large, and the spread between the PDF component means of w becomes small. The new hybrid PDF is based on the same concept, except that I had been using a hard-wired 0.75 in the place of gamma or the gamma_Skw_fnc. Re-using the tunable parameters for gamma here makes sense, since it's the same concept and this makes tuning easier. 2020-06-18 16:52:37 -050029c5dd3a6fd55e6a294aed63e5e6029810e970faI am changing the new hybrid PDF's calculation of F_w to useeditnew_hybrid_pdf_main.F90advance_clubb_core_module.F90bfde3dd3cab8d57d726caebb7544a3f171dd24bc1592857658000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the xp3 calculation for PDF types other than ADG1. ADG1 is stuck into using the LG 2005 ansatz, exactly as written. Other PDF types are not stuck using this. Rather than re-invent the wheel, these other PDF types can still use the LG 2005 ansatz equation, but sigma_sqd_w_zt (specific to ADG1) has been replaced with a tunable function relavant to other PDF types. This tunable function is called xp3_coef_fnc. The results in GrADS output files from the previous revision are an exact match to the results in GrADS output files from the current revision for all cases for the default ADG1 PDF. 2020-06-22 15:27:38 -0500bfde3dd3cab8d57d726caebb7544a3f171dd24bcI updated the xp3 calculation for PDF types other than ADG1.editadvance_clubb_core_module.F90advance_clubb_core_module.F90b9a3fc1cb5be1eedbf0543b5a29bf413d833246b1592922724000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis xp3_coef_ parameters produce new hybrid PDF results similar to the old ones for a starting point. 2020-06-23 09:32:04 -0500b9a3fc1cb5be1eedbf0543b5a29bf413d833246bThis xp3_coef_ parameters produce new hybrid PDF results similar to the oldeditadvance_clubb_core_module.F90advance_clubb_core_module.F90parameters_tunable.F90parameter_indices.F9017b61c278e074b0f13c0b7a3c7249b68c911d0961592937236000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the 2 new parameters in the simple xp3 equation (for PDF types other than ADG1) to the list of CLUBB tunable parameters. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. 2020-06-23 13:33:56 -050017b61c278e074b0f13c0b7a3c7249b68c911d096I added the 2 new parameters in the simple xp3 equation (for PDFeditadvance_clubb_core_module.F90editparameter_indices.F90editparameters_tunable.F90advance_wp2_wp3_module.F90ec26fc272f08735e68e710da38363b7efd0dd57c1594325433000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_all routines into one subroutine. This is done to remove a compiler warning, simplify the code, and prep the code for the wp3 partial upwinding. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group GitHub Issue Reference: #877. 2020-07-09 15:10:33 -0500ec26fc272f08735e68e710da38363b7efd0dd57cI have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_alleditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90306b627bcb23d1b499a98adeaed955ca6abb177f1594340218000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the partially upwinded implementation of the wp3 turbulent advection term for ADG1 to the code. It is turned off by default. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. Larson Group GitHub Issue Reference: #877. 2020-07-09 19:16:58 -0500306b627bcb23d1b499a98adeaed955ca6abb177fI added the partially upwinded implementation of the wp3 turbulent advectioneditadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90output_netcdf.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90calc_roots.F90surface_varnce_module.F90mono_flux_limiter.F908d6af15804e294c451e5055c922a26971c8d95301594355055000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused module imports 2020-07-09 23:24:15 -05008d6af15804e294c451e5055c922a26971c8d9530Removed unused module importseditoutput_netcdf.F90editadvance_clubb_core_module.F90editcalc_roots.F90editmono_flux_limiter.F90editadg1_adg2_3d_luhar_pdf.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90editsurface_varnce_module.F90editmixing_length.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editSkx_module.F90est_kessler_microphys_module.F90latin_hypercube_driver_module.F9095246a59cf7daf42bea1f966cd0bfe71eaae04f01594355055000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused module imports 2020-07-09 23:24:15 -050095246a59cf7daf42bea1f966cd0bfe71eaae04f0Removed unused module importseditest_kessler_microphys_module.F90editlatin_hypercube_driver_module.F90output_netcdf.F905aff71092d08c4cbcbbdc88c9c4823996750edfc1594358588000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved a comma that I missed while removing unused imports (#878) 2020-07-10 00:23:08 -05005aff71092d08c4cbcbbdc88c9c4823996750edfcRemoved a comma that I missed while removing unused imports (#878)editoutput_netcdf.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F9057147620713193e3f760ea88538641e52349ab841594405853000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding l_partial_upwind_wp3 to the list of clubb_config_flags. Larson Group GitHub Issue Reference: #877. 2020-07-10 13:30:53 -050057147620713193e3f760ea88538641e52349ab84I am adding l_partial_upwind_wp3 to the list of clubb_config_flags.editclubb_api_module.F90editadvance_wp2_wp3_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90parameters_silhs.F90latin_hypercube_driver_module.F906e6f394fa3e64d52dd788789db41f5cd35349ade1594769616000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduDeprecating use of l_Lscale_vert_avg in SILHS. This is causing problems with the GPUization efforts, described in larson-group/cam#129 2020-07-14 18:33:36 -05006e6f394fa3e64d52dd788789db41f5cd35349adeDeprecating use of l_Lscale_vert_avg in SILHS. This is causing problems with the GPUization efforts, described in larson-group/cam#129editparameters_silhs.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F900564f82db8dd12fafc465a90d1a283989482f3921594844985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI started the process of paring 2 subprograms back down to 1 in advance_wp2_wp3_module. Everything remains an exact match. CLUBB Issue ref: #878. 2020-07-15 15:29:45 -05000564f82db8dd12fafc465a90d1a283989482f392I started the process of paring 2 subprograms back down to 1 ineditadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F908b33c3ed3462f2c340836eb9276e7123eeef25941594850157000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI pared two more sets of equivalent subprograms down to 1 (each). Bittos are ditto Git Issue #878 2020-07-15 16:55:57 -05008b33c3ed3462f2c340836eb9276e7123eeef2594I pared two more sets of equivalent subprograms down to 1 (each).editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90034ddd2f57c2ba3d33368744e6268aec8fc4510a1594856144000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduParing down 2 equivalent subprograms to 1 again. Just call me "The Reducer" Bittos are ditto Issue #878 2020-07-15 18:35:44 -0500034ddd2f57c2ba3d33368744e6268aec8fc4510aParing down 2 equivalent subprograms to 1 again.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F909a48a69a9139f2d8b3ed6c0b9d729fe2439d7fa41594966970000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI condensed two more sets of doubled subprograms down to 1 (each) in advance_wp2_wp3_module.F90. Bittos are ditto. Big Issue #878. 2020-07-17 01:22:50 -05009a48a69a9139f2d8b3ed6c0b9d729fe2439d7fa4I condensed two more sets of doubled subprograms down to 1 (each)editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90f6211090a551eae9f5de3c2b60944efcc10e14581595010013000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduReduced two more sets of "doubled" subprograms down. Bit-for-bit 2020-07-17 13:20:13 -0500f6211090a551eae9f5de3c2b60944efcc10e1458Reduced two more sets of "doubled" subprograms down.editadvance_wp2_wp3_module.F90latin_hypercube_driver_module.F90c1b8935e7a81f9c4c6706b949e764cb1b46ea7261595023743000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating silhs to prepare the column loop commit. This is being committed seperately because it is BIT_CHANGING, due to the way we are initializing the random number generator on CPUs. larson-group/cam#129 2020-07-17 17:09:03 -0500c1b8935e7a81f9c4c6706b949e764cb1b46ea726Updating silhs to prepare the column loop commit. This is being committed seperately because it is BIT_CHANGING, due to the way we are initializing the random number generator on CPUs. larson-group/cam#129editlatin_hypercube_driver_module.F90silhs_api_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90456aaaad293ba2c1218c740543884c90dc9154511595026759000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding column loop index to silhs, and pushing loops down to allow parallelization over the column index. This requries changing the api, but it is bit-for-bit running on both gpus and cpus. larson-group/cam#129 2020-07-17 17:59:19 -0500456aaaad293ba2c1218c740543884c90dc915451Adding column loop index to silhs, and pushing loops down to allow parallelization over the column index. This requries changing the api, but it is bit-for-bit running on both gpus and cpus. larson-group/cam#129editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90editsilhs_api_module.F90advance_clubb_core_module.F90097dc4653aefee568ab81cf9f5ce6d112cd172bc1595170691000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comI updated CLUBB's copyright date range. 2020-07-19 09:58:11 -0500097dc4653aefee568ab81cf9f5ce6d112cd172bcI updated CLUBB's copyright date range.editadvance_clubb_core_module.F90silhs_api_module.F909301e56822e1b0f7d4d5ec1a7cfa21fb27ee48aa1595279402000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding interface in silhs_api to distinguish single vs multiple comulmn calls. This seems to be a better solution than the previous attempt that broke the nightly tests. When calling silhs a single column at a time, the api will copy the single column data into arrays with a grid column index, allowing us to leave the host models the same. larson-group/cam#129 2020-07-20 16:10:02 -05009301e56822e1b0f7d4d5ec1a7cfa21fb27ee48aaAdding interface in silhs_api to distinguish single vs multiple comulmn calls. This seems to be a better solution than the previous attempt that broke the nightly tests. When calling silhs a single column at a time, the api will copy the single column data into arrays with a grid column index, allowing us to leave the host models the same. larson-group/cam#129editsilhs_api_module.F90pdf_closure_module.F90bca9c6c8c0fb9a04fe5bd806cea2cd892bd9a95b1595347943000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused parameters [-Wunused-parameter] Output files are the same Issue #878 2020-07-21 11:12:23 -0500bca9c6c8c0fb9a04fe5bd806cea2cd892bd9a95bRemoved unused parameters [-Wunused-parameter]editpdf_closure_module.F90est_kessler_microphys_module.F90449ee02d46ebe4950dc9b8a3b4a0ee87b8b862721595347943000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused parameters [-Wunused-parameter] Output files are the same Issue #878 2020-07-21 11:12:23 -0500449ee02d46ebe4950dc9b8a3b4a0ee87b8b86272Removed unused parameters [-Wunused-parameter]editest_kessler_microphys_module.F90advance_wp2_wp3_module.F90632fe0cffdcec677fb17c73e49fb19b8b3652c501595441614000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTaking more duplicated subprograms and paring them down to 1. bit-4-bit; #878 2020-07-22 13:13:34 -0500632fe0cffdcec677fb17c73e49fb19b8b3652c50Taking more duplicated subprograms and paring them down to 1.editadvance_wp2_wp3_module.F90precipitation_fraction.F90advance_xp2_xpyp_module.F90parameters_tunable.F90advance_clubb_core_module.F90corr_varnce_module.F909d86e038a81f32899f20fe4c88883959891b8df01595452586000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comReplaced real checks with an epsilon approach [-Wcompare-reals] This commit should be BIT_CHANGING I accidentally put in a couple extra imports, will clean those out later Issue #878 2020-07-22 16:16:26 -05009d86e038a81f32899f20fe4c88883959891b8df0Replaced real checks with an epsilon approach [-Wcompare-reals]editprecipitation_fraction.F90editparameters_tunable.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editcorr_varnce_module.F90transform_to_pdf_module.F90silhs_importance_sample_module.F90fc375203e4d5f3ad2dd3ba40a8aedbdc2dd803521595452586000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comReplaced real checks with an epsilon approach [-Wcompare-reals] This commit should be BIT_CHANGING I accidentally put in a couple extra imports, will clean those out later Issue #878 2020-07-22 16:16:26 -0500fc375203e4d5f3ad2dd3ba40a8aedbdc2dd80352Replaced real checks with an epsilon approach [-Wcompare-reals]editsilhs_importance_sample_module.F90edittransform_to_pdf_module.F90corr_varnce_module.F904b370fe2ff24fd2d86598424c74361424ad9a94d1595456190000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused imports [-Wunused-parameter] Output is the same Issue #878 2020-07-22 17:16:30 -05004b370fe2ff24fd2d86598424c74361424ad9a94dRemoved unused imports [-Wunused-parameter]editcorr_varnce_module.F90transform_to_pdf_module.F90silhs_importance_sample_module.F906847aef50658a5a288954b592c9b6adf2cc491cd1595456190000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused imports [-Wunused-parameter] Output is the same Issue #878 2020-07-22 17:16:30 -05006847aef50658a5a288954b592c9b6adf2cc491cdRemoved unused imports [-Wunused-parameter]edittransform_to_pdf_module.F90editsilhs_importance_sample_module.F90precipitation_fraction.F9005f74998aa1912a02200c80b70fb9cac56d08e8a1595457956000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved styleguide violations from my code No change Issue #878 2020-07-22 17:45:56 -050005f74998aa1912a02200c80b70fb9cac56d08e8aRemoved styleguide violations from my codeeditprecipitation_fraction.F90parameters_tunable.F906cf01d6f24826da6eaaaec443d1c95ab8666bf8f1595520309000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comFixed a backwards epsilon comparison from 8e8e71e Results look identical Issue #878 2020-07-23 11:05:09 -05006cf01d6f24826da6eaaaec443d1c95ab8666bf8fFixed a backwards epsilon comparison from 8e8e71eeditparameters_tunable.F90advance_wp2_wp3_module.F90d9c9f9014093b3cfe7216f227621ff7bff260a2b1595525828000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoved the "doubling" of the remainder of the subprograms from advance_wp2_wp3_module.F90. Bit-for-bit; #878. 2020-07-23 12:37:08 -0500d9c9f9014093b3cfe7216f227621ff7bff260a2bRemoved the "doubling" of the remainder of the subprograms fromeditadvance_wp2_wp3_module.F90silhs_importance_sample_module.F9022eea6c0663459539b20863acdf61094a4ee94111595540475000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging epsilon used in equality comparison. The previous epsilon seems to be too large, and was causing failures in runs. larson-group/clubb#878 2020-07-23 16:41:15 -050022eea6c0663459539b20863acdf61094a4ee9411Changing epsilon used in equality comparison. The previous epsilon seems to be too large, and was causing failures in runs. larson-group/clubb#878editsilhs_importance_sample_module.F90latin_hypercube_driver_module.F909cf48dc3ffd702155f175a832543b1ccea5c2cc11595543971000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall changes to generate_all_uniform_samples. I was encountering a gpu problem with this code when run in cam. I'm not certain why this is an issue, but this changes fixes it and is bit-for-bit on both cpus and gpus. larson-group/cam#129 2020-07-23 17:39:31 -05009cf48dc3ffd702155f175a832543b1ccea5c2cc1Small changes to generate_all_uniform_samples. I was encountering a gpu problem with this code when run in cam. I'm not certain why this is an issue, but this changes fixes it and is bit-for-bit on both cpus and gpus. larson-group/cam#129editlatin_hypercube_driver_module.F90advance_xp2_xpyp_module.F90483e2dd3ae6245537b6c0b32ae8edb726e0ec49d1595608276000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comChanged the length of solve_type_str to 20 [-Wcharacter-trucation] Unchanged Issue #878 2020-07-24 11:31:16 -0500483e2dd3ae6245537b6c0b32ae8edb726e0ec49dChanged the length of solve_type_str to 20 [-Wcharacter-trucation]editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90pdf_closure_module.F90numerical_check.F90f10b9dd183a5aabfab4130401217a1f3a21901451595619599000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused arguments [-Wunused-dummy-argument] Unchanged The removed lines were commented out, opposed to deleted An if statement with continue was added to remove the warning without changing the method signature (clubb_driver.F90) Issue #878 2020-07-24 14:39:59 -0500f10b9dd183a5aabfab4130401217a1f3a2190145Removed unused arguments [-Wunused-dummy-argument]editadvance_clubb_core_module.F90editpdf_closure_module.F90editnumerical_check.F90silhs_api_module.F90latin_hypercube_driver_module.F907f8e2668c4728e4a1839307214d9ab340c7f80221595619599000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused arguments [-Wunused-dummy-argument] Unchanged The removed lines were commented out, opposed to deleted An if statement with continue was added to remove the warning without changing the method signature (clubb_driver.F90) Issue #878 2020-07-24 14:39:59 -05007f8e2668c4728e4a1839307214d9ab340c7f8022Removed unused arguments [-Wunused-dummy-argument]editsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_clubb_core_module.F9008c14a70ec4411e52e17b7c44d135a634640d8021595622374000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused variables [-Wunused-variable] Unchanged Issue #878 2020-07-24 15:26:14 -050008c14a70ec4411e52e17b7c44d135a634640d802Removed unused variables [-Wunused-variable]editadvance_clubb_core_module.F90latin_hypercube_driver_module.F900368ceb837a6b9adee914c68662dadfd7f25ee9f1595622374000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused variables [-Wunused-variable] Unchanged Issue #878 2020-07-24 15:26:14 -05000368ceb837a6b9adee914c68662dadfd7f25ee9fRemoved unused variables [-Wunused-variable]editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90fe8a2ccd15709427486d06dafd69dc519867e4a51595651752000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have tidied up advance_wp2_wp3_module.F90, and I have removed all doubled subprograms from advance_xm_wpxp_module.F90. The results in GrADS output files from this revision is an exact match to the results in GrADS output files from the previous revision for all cases. Git Issue: #878. 2020-07-24 23:35:52 -0500fe8a2ccd15709427486d06dafd69dc519867e4a5I have tidied up advance_wp2_wp3_module.F90, and I have removed all doublededitadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90d8bc4555b03e0c49bb2b8808efe15ae35e017c751595867355000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved continue and undid edits to _api fuction signatures Unchanged I left the edits to underlying fuctions, as they never used the argument in the code Issue #878 2020-07-27 11:29:15 -0500d8bc4555b03e0c49bb2b8808efe15ae35e017c75Removed continue and undid edits to _api fuction signatureseditadvance_clubb_core_module.F90silhs_api_module.F90d7e922c9ca41866d18f23e65a3478ec02c98874d1595867355000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved continue and undid edits to _api fuction signatures Unchanged I left the edits to underlying fuctions, as they never used the argument in the code Issue #878 2020-07-27 11:29:15 -0500d7e922c9ca41866d18f23e65a3478ec02c98874dRemoved continue and undid edits to _api fuction signatureseditsilhs_api_module.F90advance_xm_wpxp_module.F90advance_xp2_xpyp_module.F90turbulent_adv_pdf.F90914eb7dae9384c3270c7b2c99eee761501283f0a1595888691000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI handled the "doubled" subprograms in turbulent_adv_pdf.F90. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. CLUBB Git Issue Reference: #878. 2020-07-27 17:24:51 -0500914eb7dae9384c3270c7b2c99eee761501283f0aI handled the "doubled" subprograms in turbulent_adv_pdf.F90.editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editturbulent_adv_pdf.F90silhs_importance_sample_module.F906bdf29385494f979f22af881d5da3986ecc321941595977411000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking change explained in larson-group/clubb#878 2020-07-28 18:03:31 -05006bdf29385494f979f22af881d5da3986ecc32194Making change explained in larson-group/clubb#878editsilhs_importance_sample_module.F90silhs_api_module.F90a5ab148417dedb799c61717b7a44a34430fed4451596045831000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved some unused variables (ifort) Unchanged Issue #878 2020-07-29 13:03:51 -0500a5ab148417dedb799c61717b7a44a34430fed445Removed some unused variables (ifort)editsilhs_api_module.F90mixing_length.F90advance_clubb_core_module.F903f2c34376025ac4068b02cef98494749c4e805251596045831000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved some unused variables (ifort) Unchanged Issue #878 2020-07-29 13:03:51 -05003f2c34376025ac4068b02cef98494749c4e80525Removed some unused variables (ifort)editmixing_length.F90editadvance_clubb_core_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90e842d008e8fe68edd0da7490e49615d91082013d1596062769000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding functionality to pass in a seed for the random number generator. This allows CPU restart runs to function correctly. Because this also changes the seed, this is BIT_CHANGING. larson-group/cam#129 2020-07-29 17:46:09 -0500e842d008e8fe68edd0da7490e49615d91082013dAdding functionality to pass in a seed for the random number generator. This allows CPU restart runs to function correctly. Because this also changes the seed, this is BIT_CHANGING. larson-group/cam#129editlatin_hypercube_driver_module.F90editsilhs_api_module.F90silhs_importance_sample_module.F908a2c24804fd34888208aa27b643ab52e33e067031596126782000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved unused import [-Wunused-variable] Unchanged Issue #878 2020-07-30 11:33:02 -05008a2c24804fd34888208aa27b643ab52e33e06703Removed unused import [-Wunused-variable]editsilhs_importance_sample_module.F90pdf_closure_module.F905bb72140ec0db6dab4e53e75ecbb8510c01aecfa1596663751000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves unused function calc_cloud_frac [-Wunused-function] Unchanged Issue #878 2020-08-05 16:42:31 -05005bb72140ec0db6dab4e53e75ecbb8510c01aecfaRemoves unused function calc_cloud_frac [-Wunused-function]editpdf_closure_module.F90lapack_wrap.F90c97ab5e47db3ed88257fcc45e1de5caef4afa3b71596668117000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comFixes style issue Moves comment from line over 100 characters long to the line above Issue #878 2020-08-05 17:55:17 -0500c97ab5e47db3ed88257fcc45e1de5caef4afa3b7Fixes style issueeditlapack_wrap.F90parameters_tunable.F907baba2d841e751bb06d54b66ddaddda8083e3d791596669082000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoved import without only as it was unused Issue #878 2020-08-05 18:11:22 -05007baba2d841e751bb06d54b66ddaddda8083e3d79Removed import without only as it was unusededitparameters_tunable.F90parameters_tunable.F908391e3009cda96dfa0b4e0e3fe3784fe7ba2019e1596727382000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds mpishorthand back with only, it appears to be used somewhere Unchanged I didn't receive any warnings, because the code was incased in #ifdef SPMD Issue #878 2020-08-06 10:23:02 -05008391e3009cda96dfa0b4e0e3fe3784fe7ba2019eAdds mpishorthand back with only, it appears to be used somewhereeditparameters_tunable.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90206d072088418f9ca4f5ffb8ddd71121628adcea1597427608000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have pared two subprograms down to one again, this time for the subprograms found in module diffusion. As part of this, the calls to diffusion (for turbulent advection) in advance_microphys_module.F90 needed to be upgraded to use the fully optimized version of the code. As a result, this revision is BIT_CHANGING, but only for cases that use microphysics. A print out of the LHS array from the call to diffusion shows that numbers are in agreement until you reach the point of numerical roundoff. CLUBB Git Issue Reference: #878. 2020-08-14 12:53:28 -0500206d072088418f9ca4f5ffb8ddd71121628adceaI have pared two subprograms down to one again, this time for theeditadvance_xp2_xpyp_module.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editdiffusion.F90editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_windm_edsclrm_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F90mean_adv.F904df2dce7f6eeccf089d00ca91c7a158eef35dd441597683534000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI pared down subprogram pairs again, this time for mean advection. The results from this revision are an exact match to the result from the previous revision for all cases. Larson Group Issue Reference: #878. 2020-08-17 11:58:54 -05004df2dce7f6eeccf089d00ca91c7a158eef35dd44I pared down subprogram pairs again, this time for mean advection.editadvance_windm_edsclrm_module.F90editmono_flux_limiter.F90editmean_adv.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90parameters_tunable.F90parameter_indices.F90advance_xm_wpxp_module.F900a804e329df446504755639568533d43c71aa38c1597689543000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added altitude_threshold to the list of CLUBB's tunable parameters. The results in GrADS output files from this revision are an exact match to the results in GrADS output files from the previous revision for all cases. However, NetCDF output files are not an exact match, owing to the presence of the new tunable parameter listed in the output files. That technically makes this revision BIT_CHANGING. 2020-08-17 13:39:03 -05000a804e329df446504755639568533d43c71aa38cI added altitude_threshold to the list of CLUBB's tunable parameters.editadvance_xm_wpxp_module.F90editparameter_indices.F90editparameters_tunable.F90stats_zm_module.F90stats_zt_module.F90stats_sfc_module.F90afdb66e5b0ec6643891aa6759fe061492bbcd9421597868232000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduUpdating clubb variables to output their var_description in the form '[variable name using sci notation], [Textual descirption]' in an effort to provide more standardized titles for pyplotgenplots. 2020-08-19 15:17:12 -0500afdb66e5b0ec6643891aa6759fe061492bbcd942Updating clubb variables to output their var_description in the form '[variable name using sci notation], [Textual descirption]' in an effort to provide more standardized titles for pyplotgenplots.editstats_zt_module.F90editstats_zm_module.F90editstats_sfc_module.F90stats_zm_module.F90stats_sfc_module.F90stats_zt_module.F907466fd80923756687e034cef32675207de0dedfb1597950288000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduUpdating previous commit to not have lines over 100 characters. This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be). 2020-08-20 14:04:48 -05007466fd80923756687e034cef32675207de0dedfbUpdating previous commit to not have lines over 100 characters. This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be).editstats_sfc_module.F90editstats_zm_module.F90editstats_zt_module.F90output_netcdf.F90output_grads.F904e98f884fb43d06669dce6e29513e936baed3ecf1598309445000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds more debug lines Issue #881 2020-08-24 17:50:45 -05004e98f884fb43d06669dce6e29513e936baed3ecfAdds more debug lineseditoutput_grads.F90editoutput_netcdf.F90output_netcdf.F90output_grads.F90e3e4966b3e37f727fbee943081a479a078b4047d1598309843000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves debug lines Issue #881 2020-08-24 17:57:23 -0500e3e4966b3e37f727fbee943081a479a078b4047dRemoves debug lineseditoutput_grads.F90editoutput_netcdf.F90output_netcdf.F9027cebcd0b77b6b1a826b3d9ec6edc182131e52ca1598382981000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comAdds debug lines and changes format Issue #881 2020-08-25 14:16:21 -050027cebcd0b77b6b1a826b3d9ec6edc182131e52caAdds debug lines and changes formateditoutput_netcdf.F90output_netcdf.F90e69122b8c716881ac5818694b75940a10ae4c3781598384297000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comModifies debug line Issue #881 2020-08-25 14:38:17 -0500e69122b8c716881ac5818694b75940a10ae4c378Modifies debug lineeditoutput_netcdf.F90output_netcdf.F9052244022211caf4b18ed05a98bc946b8c8e2f1bf1598388387000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comModifies debug line Issue #881 2020-08-25 15:46:27 -050052244022211caf4b18ed05a98bc946b8c8e2f1bfModifies debug lineeditoutput_netcdf.F90output_netcdf.F905c207cd1008c3a8d8b6961acfca06ffd42ebef381598472032000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comInitialize ncf%ntimes to 0 when opening netcdf for writing Issue #881 2020-08-26 15:00:32 -05005c207cd1008c3a8d8b6961acfca06ffd42ebef38Initialize ncf%ntimes to 0 when opening netcdf for writingeditoutput_netcdf.F90output_netcdf.F902855a9acb24ba4238edd801a4cd86335676153321598474183000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comRemoves debug lines Issue #881 2020-08-26 15:36:23 -05002855a9acb24ba4238edd801a4cd8633567615332Removes debug lineseditoutput_netcdf.F90stat_file_module.F901d2c3305ba6770d82b958af367a53bc676361dd81598555787000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comChanges length of units variable in stat_file_module from 20 to 25 BIT_CHANGING The previous length of 20 was cutting off the last character for the unit `kg^{3} kg^{-3} s^{-1}`, which was causing checkBudget.py to fail. I upped it to 25 because that is a nice number. Issue #881 2020-08-27 14:16:27 -05001d2c3305ba6770d82b958af367a53bc676361dd8Changes length of units variable in stat_file_module from 20 to 25editstat_file_module.F90output_2D_samples_module.F90e39f3a9976193002fed4fa62d4390801cb80a24c1600356560000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines. 2020-09-17 10:29:20 -0500e39f3a9976193002fed4fa62d4390801cb80a24cThis commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines.editoutput_2D_samples_module.F90silhs_api_module.F90f29953024a9efa8f3b396d8020a8588c691ef9a21600450428000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo). 2020-09-18 12:33:48 -0500f29953024a9efa8f3b396d8020a8588c691ef9a2Adding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo).editsilhs_api_module.F90setup_clubb_pdf_params.F90faaa09a9dd4400fece94bd30bdef37d5549483601600849530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the stats code in setup_clubb_pdf_params.F90 and in latin_hypercube_driver_module.F90 to loop over stat_update_var_pt up to level nz, rather than call stat_update_var. This is done to allow E3SM-CLUBB-SILHS to run without issue. In that code base, SILHS and CLUBB have differing numbers of vertical levels. The results in output files from this revision are an exact match to the results in output files from the previous revision for all cases. 2020-09-23 03:25:30 -0500faaa09a9dd4400fece94bd30bdef37d554948360I updated the stats code in setup_clubb_pdf_params.F90 and ineditsetup_clubb_pdf_params.F90latin_hypercube_driver_module.F90b61ffdbef6993ce180a00aff3936f775316396311600849530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the stats code in setup_clubb_pdf_params.F90 and in latin_hypercube_driver_module.F90 to loop over stat_update_var_pt up to level nz, rather than call stat_update_var. This is done to allow E3SM-CLUBB-SILHS to run without issue. In that code base, SILHS and CLUBB have differing numbers of vertical levels. The results in output files from this revision are an exact match to the results in output files from the previous revision for all cases. 2020-09-23 03:25:30 -0500b61ffdbef6993ce180a00aff3936f77531639631I updated the stats code in setup_clubb_pdf_params.F90 and ineditlatin_hypercube_driver_module.F90silhs_api_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F90e0f1e9b683592ca8513e732120a20df0d2438f1e1601385131000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information. Also, "rlat" and "rlon" are changed to "lat_vals" and "lon_vals" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use "rlat" and "rlon" in the code where they interface with CLUBB.) See issue #887. 2020-09-29 08:12:11 -0500e0f1e9b683592ca8513e732120a20df0d2438f1eThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.editsilhs_api_module.F90editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90output_netcdf.F90output_grads.F90stats_type_utilities.F90stat_file_module.F90stats_clubb_utilities.F90clubb_api_module.F906482c644791940f0cad2e1cd53c61844f6f565001601385131000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information. Also, "rlat" and "rlon" are changed to "lat_vals" and "lon_vals" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use "rlat" and "rlon" in the code where they interface with CLUBB.) See issue #887. 2020-09-29 08:12:11 -05006482c644791940f0cad2e1cd53c61844f6f56500This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the "lh_sample_number" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.editoutput_grads.F90editstats_type_utilities.F90editstat_file_module.F90editoutput_netcdf.F90editstats_clubb_utilities.F90editclubb_api_module.F90latin_hypercube_driver_module.F904fabcab89058c3d216ee6c6ef3ec977e14476e101601407797000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUndoing accidental find and replace. larson-group/cam#129 2020-09-29 14:29:57 -05004fabcab89058c3d216ee6c6ef3ec977e14476e10Undoing accidental find and replace. larson-group/cam#129editlatin_hypercube_driver_module.F90stats_zm_module.F90stats_zt_module.F90stats_sfc_module.F90835b96e74437f9a1ecd703a6682c75a19568c7c31601659393000http://carson.math.uwm.edu/jenkins/user/nchiefnchiefnchief@gmail.comUpdated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832 Moved wp2thvp just after the Cloud water contribution to wp2thvp panel 2020-10-02 12:23:13 -0500835b96e74437f9a1ecd703a6682c75a19568c7c3Updated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832editstats_zt_module.F90editstats_zm_module.F90editstats_sfc_module.F90stats_zt_module.F9016a52f15f8eec9cd96250e2824c9902bfe9256d51601737119000http://carson.math.uwm.edu/jenkins/user/strikestrikestrike@uwm.eduFix super serious 1 character bug that broke all of the things 2020-10-03 09:58:39 -050016a52f15f8eec9cd96250e2824c9902bfe9256d5Fix super serious 1 character bug that broke all of the thingseditstats_zt_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90stats_variables.F90stats_zm_module.F90advance_helper_module.F9009188158a0ffe085e949f4497fd417be6fca2c501602204599000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing Zhun's changes to the CLUBB portion of his E3SM-CLUBB-SILHS branch to the clubb_E3SM_SILHS_branch_merge branch of CLUBB. The goal is for this code to eventually be merged into the CLUBB master. 2020-10-08 19:49:59 -050009188158a0ffe085e949f4497fd417be6fca2c50I am committing Zhun's changes to the CLUBB portion of hiseditclubb_api_module.F90editparameters_tunable.F90editadvance_xm_wpxp_module.F90editstats_variables.F90editadvance_helper_module.F90editparameter_indices.F90editadvance_xp2_xpyp_module.F90editstats_zm_module.F90editadvance_clubb_core_module.F90stats_zm_module.F90121e67c4b158a54e87e7817956bb4a12f706e9c31604414984000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate stats_zm_module.F90 Added apostrophe to thl'thv' for consistency. 2020-11-03 08:49:44 -0600121e67c4b158a54e87e7817956bb4a12f706e9c3Update stats_zm_module.F90editstats_zm_module.F90parameters_tunable.F90parameter_indices.F90b65048d5fb0571e486c365ef27f0863fda44a2d01604690665000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max to the list of CLUBB's tunable parameters. 2020-11-06 13:24:25 -0600b65048d5fb0571e486c365ef27f0863fda44a2d0I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_maxeditparameters_tunable.F90editparameter_indices.F90advance_helper_module.F908d20eb1aa94009fcd9c89f703d10e9ba438e48451604691057000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI connected the new tunable parameters to advance_helper_module.F90. 2020-11-06 13:30:57 -06008d20eb1aa94009fcd9c89f703d10e9ba438e4845I connected the new tunable parameters to advance_helper_module.F90.editadvance_helper_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_helper_module.F9025ed680064c8ab4ee4f74c34b440257faf9fd70e1605747985000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added l_use_shear_Richardson to CLUBB's configurable model flags. 2020-11-18 19:06:25 -060025ed680064c8ab4ee4f74c34b440257faf9fd70eI added l_use_shear_Richardson to CLUBB's configurable model flags.editadvance_clubb_core_module.F90editclubb_api_module.F90editmodel_flags.F90editadvance_helper_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90advance_xm_wpxp_module.F90clubb_api_module.F903dc70ce717348532fbc888574f7f0825ea8a401e1606141860000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. This is intended to help smooth high-frequency oscillations. Flag is set to false by default so has no impact on standard runs. 2020-11-23 08:31:00 -06003dc70ce717348532fbc888574f7f0825ea8a401eAdding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. This is intended to help smooth high-frequency oscillations. Flag is set to false by default so has no impact on standard runs.editadvance_xm_wpxp_module.F90editclubb_api_module.F90editmodel_flags.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90954c6c2dbef62f96755207776d56cbd9b4e9cb5d1606338607000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduIn order to prevent dycoms2_rf02_so from crashing, I replaced C7_Skw_fnc by 0.7 in upwp_pr4 and vpwp_pr4. This prevents an excessive wind gradient (dum/dz) from forming near the lower surface. This commit is BIT_CHANGING. For larson-group/e3sm#30. 2020-11-25 15:10:07 -0600954c6c2dbef62f96755207776d56cbd9b4e9cb5dIn order to prevent dycoms2_rf02_so from crashing,editadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F90e65f26062f1a7b61581f530a81532795bff72cbd1606338983000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI updated the recording of the budget terms for upwp_pr4 and vpwp_pr4. The simulation should be BFB, but because the budget term is updated consistently now, this commit is BIT_CHANGING. For larson-group/e3sm#30. 2020-11-25 15:16:23 -0600e65f26062f1a7b61581f530a81532795bff72cbdI updated the recording of the budget terms for upwp_pr4 and vpwp_pr4.editadvance_xm_wpxp_module.F90advance_helper_module.F90cacdab660c210f30178d483c8545d39a7b2568ab1606763229000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894. 2020-11-30 13:07:09 -0600cacdab660c210f30178d483c8545d39a7b2568abAdding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894.editadvance_helper_module.F90advance_helper_module.F90c2066af74a5d49e40558fc1d59352f118028c96c1606772963000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding some comments describing zm and zt for the new interface functions, and fixing a problem in the "array_sclr" versions of the functions. See issue #894. 2020-11-30 15:49:23 -0600c2066af74a5d49e40558fc1d59352f118028c96cAdding some comments describing zm and zt for the new interface functions, and fixing a problem in the "array_sclr" versions of the functions. See issue #894.editadvance_helper_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F9013f11f11a25ca3c19dd944fc13003b1542e86d201606856173000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduModifying some array dimensions to speed up multiply_Cholesky. This cuts the cost of multiply_Cholesky by about 60% in cam but only about 15% in clubb_standalone. larson-group/cam#129 2020-12-01 14:56:13 -060013f11f11a25ca3c19dd944fc13003b1542e86d20Modifying some array dimensions to speed up multiply_Cholesky. This cuts the cost of multiply_Cholesky by about 60% in cam but only about 15% in clubb_standalone. larson-group/cam#129edittransform_to_pdf_module.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90stats_zt_module.F90stats_variables.F90stats_zm_module.F9051f8757f2ece02721c4c95797df4b6738111fead1607615302000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit replaces division by tau with multiplication by inverse tau in most cases. It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine. There is also some minor cleanup. See issue #899. 2020-12-10 09:48:22 -060051f8757f2ece02721c4c95797df4b6738111feadThis commit replaces division by tau with multiplication by inverse tau in most cases. It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine.editstats_variables.F90editadvance_wp2_wp3_module.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90editstats_zt_module.F90editadvance_xp2_xpyp_module.F90editadvance_xp3_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90clubb_api_module.F90d08fdc395bde39bc7b72378b25216f1957c06ec91607641700000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a bug fix to the invrs_tau_zm equation that was introduced with the code merge from E3SM. I am also adding some changes to the clubb_api_module that should have been brought over at that time. This commit is BIT_CHANGING with the bug fix. 2020-12-10 17:08:20 -0600d08fdc395bde39bc7b72378b25216f1957c06ec9I am committing a bug fix to the invrs_tau_zm equation that waseditclubb_api_module.F90editadvance_clubb_core_module.F90stats_zm_module.F90advance_clubb_core_module.F90fc1a13766333b94e05f14ffbbd1ebbc88393c58d1607984534000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCLUBB and pyplotgen changes: 1. Putting smoothing on thlm before the Brunt-Vaisala frequency calculation. We find this helps smooth oscillations in that variable, see issue #894. Also fixing spelling mistake in stats_zm_module.F90, and adding bv_freq_sqd to nightly_stats.in. For all these reasons this commit is BIT_CHANGING, but only the thlm smoothing will change the physical results. 2. Pyplotgen: I moved Brunt-Vaisala to VariableGroupBase.py so it should show up in the nightly plots, I got rid of VariableGroupTaus from the default Case definitions, and made a couple other minor changes including making the solid line thicker for standard CLUBB plots. 2020-12-14 16:22:14 -0600fc1a13766333b94e05f14ffbbd1ebbc88393c58dCLUBB and pyplotgen changes:editstats_zm_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F90dc88808be3203de9536f2dbe34a77dc209d903381608165333000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed the LMM stepping bug that was affecting E3SM (because l_predict_upwp_vpwp is false over there) in advance_xm_wpxp_module.F90. I also added it to all predictive fields. The results in NetCDF output files from this revision is an exact match to the results in NetCDF output files from the previous revision for all cases because LMM stepping is turned off by default. 2020-12-16 18:35:33 -0600dc88808be3203de9536f2dbe34a77dc209d90338I fixed the LMM stepping bug that was affecting E3SM (becauseeditadvance_xp3_module.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F90378b99093fca66e7223cae49ad0ca088e0f0148a1608165625000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed alignment. 2020-12-16 18:40:25 -0600378b99093fca66e7223cae49ad0ca088e0f0148aFixed alignment.editadvance_xm_wpxp_module.F90parameters_tunable.F90advance_clubb_core_module.F90parameter_indices.F90model_flags.F90clubb_api_module.F90df97ac5bcdd52b069a9cc74f9321c3ffb5cc69811608225144000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two "magic numbers" in the code. The primary code changes are in advance_clubb_core_module.F90. This is a BIT_CHANGING commit due to the new parameters affecting the netcdf output but the physical results should remain the same for now. See relevant issues #894 and #897. 2020-12-17 11:12:24 -0600df97ac5bcdd52b069a9cc74f9321c3ffb5cc6981This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two "magic numbers" in the code. The primary code changes are in advance_clubb_core_module.F90.editparameters_tunable.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editparameter_indices.F90editmodel_flags.F90parameter_indices.F90034049b46393a096da28099eef60ca5801a7f3291608239444000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameter_indices.F90 Switching the order of two variables. Was causing the values of these parameters to be reversed in some output files (but no effect on physical results). 2020-12-17 15:10:44 -0600034049b46393a096da28099eef60ca5801a7f329Update parameter_indices.F90editparameter_indices.F90model_flags.F903992f76b8f461365f321eddd00d1951c7540475a1608325274000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate model_flags.F90 Setting l_use_shear_Richardson to false in model_flags.in to be consistent with the default configurable_model_flags.in file. This will ensure consistency with other nightly tests (eg WRF and SAM) that do not read configureable_model_flags.in. 2020-12-18 15:01:14 -06003992f76b8f461365f321eddd00d1951c7540475aUpdate model_flags.F90editmodel_flags.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F9013cf0163bb65ea786b232a7a4ebea978fe958d441610388625000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884. 2021-01-11 12:10:25 -060013cf0163bb65ea786b232a7a4ebea978fe958d44Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editmodel_flags.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90217a6182be062dc94ac62d8880a181ec82011b971610658263000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comSeparating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901. This commit is BIT_CHANGING, both because it will change the names of parameters output to netcdf, and because it changes the results of the more sensitive CLUBB test cases (like ARM_97), since there is an order-of-operations change involved in the subroutine "wp2_term_pr3_rhs" in advance_wp2_wp3_module.F90. 2021-01-14 15:04:23 -0600217a6182be062dc94ac62d8880a181ec82011b97Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.editclubb_api_module.F90editparameters_tunable.F90editadvance_xm_wpxp_module.F90editparameter_indices.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90silhs_api_module.F90latin_hypercube_driver_module.F907e1baf2139189deaa6c2da15181bb8cdcf55c4b51610686189000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am now passing vert_decorr_coef into SILHS instead of involving a USE statement. 2021-01-14 22:49:49 -06007e1baf2139189deaa6c2da15181bb8cdcf55c4b5I am now passing vert_decorr_coef into SILHS instead of involvingeditlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F9074bc7b14e4dea9c34e9d28071afac13e80a79e821610740288000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to "C_5" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up). This commit is BIT_CHANGING, similar to the previous commit, because of the order-of-operations change in the pr2 term for up2 and vp2. This leaves more stable cases like BOMEX bit-for-bit identical, but changes outcomes for more senstive cases like ARM_97. See issue #901. 2021-01-15 13:51:28 -060074bc7b14e4dea9c34e9d28071afac13e80a79e82This commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to "C_5" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up).editadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90advance_xp2_xpyp_module.F904af03a62d94eec9f15856429b959b164e0c73d541611079334000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding a test to make sure new C_uu_buoy parameter is within the valid range. See #901. 2021-01-19 12:02:14 -06004af03a62d94eec9f15856429b959b164e0c73d54Adding a test to make sure new C_uu_buoy parameter is within the valid range. See #901.editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90parameter_indices.F90model_flags.F90clubb_api_module.F90stats_zt_module.F90stats_variables.F90parameters_tunable.F90405016e402e3fa788758ba73639fdd4c892e95ad1611176566000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThis commit renames the wp3 budget term from "bp2" to "pr_turb", and renames the related parameter "C15" to "C_wp3_turb". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files. This commit is BIT_CHANGING, but only because it renames a variable and a parameter. Results should be bit-for-bit with previous results. See issue #901. 2021-01-20 15:02:46 -0600405016e402e3fa788758ba73639fdd4c892e95adThis commit renames the wp3 budget term from "bp2" to "pr_turb", and renames the related parameter "C15" to "C_wp3_turb". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editparameter_indices.F90editmodel_flags.F90editstats_variables.F90editstats_zt_module.F90editparameters_tunable.F90editclubb_api_module.F90silhs_api_module.F90parameters_silhs.F907a13d2a715a4954d2fb1e1b2485f5f56026e77341611270040000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis will allow for a better interface of SILHS parameter vert_decorr_coef with host model codes. 2021-01-21 17:00:40 -06007a13d2a715a4954d2fb1e1b2485f5f56026e7734This will allow for a better interface of SILHS parametereditsilhs_api_module.F90editparameters_silhs.F90parameters_silhs.F907bd738c4f823c16c0e3b7fe2e5eb25382dabd2171611270711000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a preprocessor command. 2021-01-21 17:11:51 -06007bd738c4f823c16c0e3b7fe2e5eb25382dabd217Fixed a preprocessor command.editparameters_silhs.F90silhs_api_module.F9050254f89a49d5b72abedf72ac7356f92ced3aca51611288887000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI'm adding the api entry for read_silhs_parameters, called read_silhs_parameters_api. 2021-01-21 22:14:47 -060050254f89a49d5b72abedf72ac7356f92ced3aca5I'm adding the api entry for read_silhs_parameters, callededitsilhs_api_module.F90silhs_api_module.F90ad27d2d29f4e532b67fb52c8f075e3251403e9c61611608667000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I'm adding the api entry for read_silhs_parameters, called" This reverts commit f2dc5c25386fd37bc1bf8ccff7844c66ee79ac36. 2021-01-25 15:04:27 -0600ad27d2d29f4e532b67fb52c8f075e3251403e9c6Revert "I'm adding the api entry for read_silhs_parameters, called"editsilhs_api_module.F90parameters_silhs.F909672d1836e6cf847d0ab804cd0782b3bc22c22ef1611608682000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Fixed a preprocessor command." This reverts commit b349140012f53280aaf8294c1c3d6bc95f8d85b2. 2021-01-25 15:04:42 -06009672d1836e6cf847d0ab804cd0782b3bc22c22efRevert "Fixed a preprocessor command."editparameters_silhs.F90silhs_api_module.F90parameters_silhs.F9056af2a083547f0f5d0fc34ff2cd726898f19d8d41611608697000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "This will allow for a better interface of SILHS parameter" This reverts commit 47032b78a9fd8ddf19c30483abff933e099c9e43. 2021-01-25 15:04:57 -060056af2a083547f0f5d0fc34ff2cd726898f19d8d4Revert "This will allow for a better interface of SILHS parameter"editsilhs_api_module.F90editparameters_silhs.F90silhs_api_module.F90bf77152b7ac0acae64e849466f25f2bf3ccf986f1611609376000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated silhs_api_module so that vert_decorr_coef is publically available for some host models (e.g. SAM and WRF). 2021-01-25 15:16:16 -0600bf77152b7ac0acae64e849466f25f2bf3ccf986fI updated silhs_api_module so that vert_decorr_coef is publically availableeditsilhs_api_module.F90advance_clubb_core_module.F90model_flags.F90turbulent_adv_pdf.F90clubb_api_module.F90advance_xm_wpxp_module.F904165ae0836d60e74a5eee2e1bf5f1be885a1ff6a1611674403000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comIncorporating Shixuan Zhang's and Chris Vogl's "l_godunov_upwind_wpxp_ta" flag and related code. The flag is set to false by default so results are unaffected. See #902. 2021-01-26 09:20:03 -06004165ae0836d60e74a5eee2e1bf5f1be885a1ff6aIncorporating Shixuan Zhang's and Chris Vogl's "l_godunov_upwind_wpxp_ta" flag and related code. The flag is set to false by default so results are unaffected. See #902.editturbulent_adv_pdf.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90advance_xm_wpxp_module.F90bdc11caa173990eaf25cc2e91a95c472ab5a6abd1611776290000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term. This commit is BIT_CHANGING. See #901. 2021-01-27 13:38:10 -0600bdc11caa173990eaf25cc2e91a95c472ab5a6abdUpdating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term.editadvance_xm_wpxp_module.F90latin_hypercube_driver_module.F9063c8e9a172cdc920b1f49fd39aafc1f0503cc1a41611783834000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving the acc update host directive to after the wait directives in silhs. Since silhs runs with asyncronous kernel calls the update was occasionally happening before some clipping was finished, causing problems in assert_correct_cloud_normal. This is only a problem when compiling with OpenACC enabled, so it should be bit identical for all our tests. larson-group/cam#129 2021-01-27 15:43:54 -060063c8e9a172cdc920b1f49fd39aafc1f0503cc1a4Moving the acc update host directive to after the wait directives in silhs. Since silhs runs with asyncronous kernel calls the update was occasionally happening before some clipping was finished, causing problems in assert_correct_cloud_normal. This is only a problem when compiling with OpenACC enabled, so it should be bit identical for all our tests. larson-group/cam#129editlatin_hypercube_driver_module.F90parameters_tunable.F9076c180d60652ae4e949b261d8ed4a196f14f312d1611840176000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate parameters_tunable.F90 Updating to match default tunable_parameters.in. 2021-01-28 07:22:56 -060076c180d60652ae4e949b261d8ed4a196f14f312dUpdate parameters_tunable.F90editparameters_tunable.F90silhs_api_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90math_utilities.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90output_2D_samples_module.F900ad9f3a979d7ee40ab1ed902502468de4a46c2f61612480793000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReording vertical and subcolumn dimensions in SILHS. This is BIT_CHANING in some cases, seemly due to an outputting error for the precip_rate field, but plotted results are identical. larson-group/cam#129 2021-02-04 17:19:53 -06000ad9f3a979d7ee40ab1ed902502468de4a46c2f6Reording vertical and subcolumn dimensions in SILHS. This is BIT_CHANING in some cases, seemly due to an outputting error for the precip_rate field, but plotted results are identical. larson-group/cam#129editest_kessler_microphys_module.F90editlh_microphys_var_covar_module.F90editlatin_hypercube_driver_module.F90editmath_utilities.F90editoutput_2D_samples_module.F90edittransform_to_pdf_module.F90editsilhs_api_module.F90latin_hypercube_driver_module.F900f7d70b05fdf184b57e9ceaa62e16b95da2948351613506124000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging dimension order of rand_pool to make consistent with previous reorderings. This is BIT_CHANGING for silhs cases since it changes the order in which random numbers are used. larson-group/cam#129 2021-02-16 14:08:44 -06000f7d70b05fdf184b57e9ceaa62e16b95da294835Changing dimension order of rand_pool to make consistent with previous reorderings. This is BIT_CHANGING for silhs cases since it changes the order in which random numbers are used. larson-group/cam#129editlatin_hypercube_driver_module.F90calendar.F90clubb_api_module.F90output_netcdf.F90pos_definite_module.F90input_reader.F90diagnose_correlations_module.F90parameters_tunable.F90grid_class.F90sponge_layer_damping.F90new_pdf.F90advance_helper_module.F90mixing_length.F90file_functions.F90saturation.F90output_grads.F90advance_clubb_core_module.F90fill_holes.F90interpolation.F90stats_clubb_utilities.F90new_hybrid_pdf_main.F90matrix_operations.F90corr_varnce_module.F9076854dadc00cb0ece5d773ef7cc623bf83980d951613874481000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comChanges non-success `stop` statements to `error stop` Changes files in the src/CLUBB_core directory larson-group/sys_admin#725 2021-02-20 20:28:01 -060076854dadc00cb0ece5d773ef7cc623bf83980d95Changes non-success `stop` statements to `error stop`editparameters_tunable.F90editsaturation.F90editnew_hybrid_pdf_main.F90editoutput_netcdf.F90editdiagnose_correlations_module.F90editadvance_helper_module.F90editcalendar.F90editinterpolation.F90editclubb_api_module.F90editsponge_layer_damping.F90editoutput_grads.F90editfile_functions.F90editpos_definite_module.F90editmixing_length.F90editadvance_clubb_core_module.F90editmatrix_operations.F90editinput_reader.F90editnew_pdf.F90editcorr_varnce_module.F90editgrid_class.F90editstats_clubb_utilities.F90editfill_holes.F90silhs_importance_sample_module.F90est_kessler_microphys_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90a4ddd4f89fffdfbf923b7b3d28c3e292777c24b41613874481000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comChanges non-success `stop` statements to `error stop` Changes files in `src/SILHS` directory larson-group/sys_admin#725 2021-02-20 20:28:01 -0600a4ddd4f89fffdfbf923b7b3d28c3e292777c24b4Changes non-success `stop` statements to `error stop`editlatin_hypercube_driver_module.F90editsilhs_importance_sample_module.F90editoutput_2D_samples_module.F90editest_kessler_microphys_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90turbulent_adv_pdf.F90d985b8a9601d3a02a009424bcc801294b1eb04631614367438000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902. 2021-02-26 13:23:58 -0600d985b8a9601d3a02a009424bcc801294b1eb0463Adding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902.editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editmodel_flags.F90editclubb_api_module.F90editturbulent_adv_pdf.F90advance_wp2_wp3_module.F908aebfdf2b109ec3d6fdc434375805fc1a4d6760a1614626041000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comTurning on wp3 pr_turb term. This commit sets C_wp3_turb=1 and l_use_tke_in_wp3_pr_turb_term=.true. and is BIT_CHANGING. Also in the pr_turb term I have converted the wp2_zt outside the derivative to a wp2 (momentum levels) inside the derivative. See #884. 2021-03-01 13:14:01 -06008aebfdf2b109ec3d6fdc434375805fc1a4d6760aTurning on wp3 pr_turb term.editadvance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90surface_varnce_module.F90clubb_api_module.F90f9dd235e6cea6c1c32168b7122b2054d078380481615074952000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged the variable up2_vp2_factor to up2_sfc_coef in all files 2021-03-06 17:55:52 -0600f9dd235e6cea6c1c32168b7122b2054d07838048Changed the variable up2_vp2_factor to up2_sfc_coef in all fileseditsurface_varnce_module.F90editparameter_indices.F90editparameters_tunable.F90editclubb_api_module.F90advance_clubb_core_module.F90surface_varnce_module.F9013d8c614dd9a7ab539ab349ebeab61758bb666ae1615324148000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduI added an option to improve dry, convecting boundary layers. The new option is triggered by setting l_vary_convect_depth=.true. The option reduces the spurious surface spike in thlp2 in Wangara. The option calculates the Deardorff convective velocity using a variable estimate of layer depth based on the depth over which wpthlp is positive near the ground. thlp2_sfc is then diagnosed by assuming maximal correlation between thl and vertical velocity, w. Currently, l_vary_convect_depth is set to false, and hence the answers remain BFB. For #905. 2021-03-09 15:09:08 -060013d8c614dd9a7ab539ab349ebeab61758bb666aeI added an option to improve dry, convecting boundary layers.editadvance_clubb_core_module.F90editsurface_varnce_module.F90advance_xp2_xpyp_module.F90e5caa86acac2277408322ef32ba0587ed9194fe31615986503000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comThis commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. In other words, up2_dp1 <---> up2_pr1 and vp2_dp1 <---> vp2_pr1. This makes the terms in these equations more consistent with the terms in the wp2 equation. I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped). 2021-03-17 08:08:23 -0500e5caa86acac2277408322ef32ba0587ed9194fe3This commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. In other words, up2_dp1 <---> up2_pr1 and vp2_dp1 <---> vp2_pr1. This makes the terms in these equations more consistent with the terms in the wp2 equation. I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped).editadvance_xp2_xpyp_module.F90stats_sfc_module.F90advance_clubb_core_module.F90grid_class.F90surface_varnce_module.F90sfc_varnce_module.F90numerical_check.F90df7d5489d978444c7ca8a4ae9cd9f6411d9f024f1616100132000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged surface to sfc in all instances where requested 2021-03-18 15:42:12 -0500df7d5489d978444c7ca8a4ae9cd9f6411d9f024fChanged surface to sfc in all instances where requesteddeletesurface_varnce_module.F90editadvance_clubb_core_module.F90editnumerical_check.F90addsfc_varnce_module.F90editgrid_class.F90editstats_sfc_module.F90stats_sfc_module.F90b963c2ef6d96de64d0efc4523c28aae810cd0b941616102621000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in stats_sfc_module.F90 2021-03-18 16:23:41 -0500b963c2ef6d96de64d0efc4523c28aae810cd0b94Undid sfc change in stats_sfc_module.F90editstats_sfc_module.F90grid_class.F90b47281e4a8aa2231716f381b9c11a2b2a6ad9ce21616102639000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change to grid_class.F90 2021-03-18 16:23:59 -0500b47281e4a8aa2231716f381b9c11a2b2a6ad9ce2Undid sfc change to grid_class.F90editgrid_class.F90numerical_check.F90ee6b3685c962fdd07d6c405a74bc22b2fed6cb121616102659000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in numerical_check.F90 2021-03-18 16:24:19 -0500ee6b3685c962fdd07d6c405a74bc22b2fed6cb12Undid sfc change in numerical_check.F90editnumerical_check.F90setup_clubb_pdf_params.F90clubb_api_module.F905a8b661e439baa46b7deabf6e7625a2a46dad1881616623371000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129 2021-03-24 17:02:51 -05005a8b661e439baa46b7deabf6e7625a2a46dad188Pushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129editsetup_clubb_pdf_params.F90editclubb_api_module.F90setup_clubb_pdf_params.F90626a34a5add8859578c79290929d28b9a582a9c81616632453000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBroke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129 2021-03-24 19:34:13 -0500626a34a5add8859578c79290929d28b9a582a9c8Broke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff71616632485000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed typo bug. larson-group/cam#129 2021-03-24 19:34:45 -0500e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff7Fixed typo bug. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F9083811d1b6b9ea21bf7de99ca5a089c8f577ea1f01616795595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushed down some more loops in setup_pdf_params. All bit-for-bit. larson-group/cam#129 2021-03-26 16:53:15 -050083811d1b6b9ea21bf7de99ca5a089c8f577ea1f0Pushed down some more loops in setup_pdf_params. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F907d3c765381a54780d7afe18727357a13cf8f89021617149848000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore pushing loops down. All bit-for-bit. larson-group/cam#129 2021-03-30 19:17:28 -05007d3c765381a54780d7afe18727357a13cf8f8902More pushing loops down. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F908a392e2906267efd3cf17d2218d908bc642e2b651617226775000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing. All bit-for-bit. larson-group/cam#129 2021-03-31 16:39:35 -05008a392e2906267efd3cf17d2218d908bc642e2b65More loop pushing. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F905eea93b439a4b65bd66ee2c99ea450c12700d4651617308426000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing. All bit-for-bit. larson-group/cam#129 2021-04-01 15:20:26 -05005eea93b439a4b65bd66ee2c99ea450c12700d465More loop pushing. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90ddd03bfb9937fcf53449bd60f6daeab26a1c1a4e1617736320000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding comments explaining why component_corr_x_hm_n_ip uses corr_array_n_cloud twice. larson-group/cam#129 2021-04-06 14:12:00 -0500ddd03bfb9937fcf53449bd60f6daeab26a1c1a4eAdding comments explaining why component_corr_x_hm_n_ip uses corr_array_n_cloud twice. larson-group/cam#129editsetup_clubb_pdf_params.F90precipitation_fraction.F90setup_clubb_pdf_params.F903dfd524a9fb317bb2ba2bc1144725e4e6b1303f91617751722000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing, all bit-for-bit. larson-group/cam#129 2021-04-06 18:28:42 -05003dfd524a9fb317bb2ba2bc1144725e4e6b1303f9More loop pushing, all bit-for-bit. larson-group/cam#129editprecipitation_fraction.F90editsetup_clubb_pdf_params.F90mono_flux_limiter.F9020d8d29a86a4bd146281a4e07fde77759bccaae51617751805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding one_half to use statement. This was a bug preventing compilation when using the ifort compiler with the MKL functions. 2021-04-06 18:30:05 -050020d8d29a86a4bd146281a4e07fde77759bccaae5Adding one_half to use statement. This was a bug preventing compilation when using the ifort compiler with the MKL functions.editmono_flux_limiter.F90mono_flux_limiter.F90459d33c483a695d8c5280a668c77b1ca11e1b6701617819873000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving use statement for one_half inside ifdef, since it is only needed if compilation with MKL functions is enabled. 2021-04-07 13:24:33 -0500459d33c483a695d8c5280a668c77b1ca11e1b670Moving use statement for one_half inside ifdef, since it is only needed if compilation with MKL functions is enabled.editmono_flux_limiter.F90setup_clubb_pdf_params.F90836ef0b2febf72beed7ee82884964687e6a409841617916504000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReducing the number of calls to Cholesky_factor. This is bit-for-bit for all standalone cases and our coarse res version of cam. larson-group/cam#129 2021-04-08 16:15:04 -0500836ef0b2febf72beed7ee82884964687e6a40984Reducing the number of calls to Cholesky_factor. This is bit-for-bit for all standalone cases and our coarse res version of cam. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90clubb_api_module.F9081f99a736be5ecab38c06863bced4837d694c08e1617922941000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129 2021-04-08 18:02:21 -050081f99a736be5ecab38c06863bced4837d694c08eReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90editclubb_api_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F906392e9cc0de299d0de9ce962ba5da5104b1a87561617922941000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129 2021-04-08 18:02:21 -05006392e9cc0de299d0de9ce962ba5da5104b1a8756Reordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90setup_clubb_pdf_params.F90ca2f0784973138d286bb3bef8f26ac27e039fbef1617998854000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPerformance improvements from chaning loop orderings and redundant operation reduction. All bit-for-bit. larson-group/cam#129 2021-04-09 15:07:34 -0500ca2f0784973138d286bb3bef8f26ac27e039fbefPerformance improvements from chaning loop orderings and redundant operation reduction. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F9006ffbc2944cd085910cc68344ca3646934145a931618000160000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReordering dimensions on some arrays. This is bit-for-bit. larson-group/cam#129 2021-04-09 15:29:20 -050006ffbc2944cd085910cc68344ca3646934145a93Reordering dimensions on some arrays. This is bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90setup_clubb_pdf_params.F90746f45a04d2e889f4feb1dfb69b0a7f5b19e04c21618001640000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReducing operations. All bit-for-bit. larson-group/cam#129 2021-04-09 15:54:00 -0500746f45a04d2e889f4feb1dfb69b0a7f5b19e04c2Reducing operations. All bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90pdf_utilities.F90setup_clubb_pdf_params.F900b60550541c0d76dcc5a42894822d0d3c4899b7c1618007396000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding 2D subroutine versions of some functions to improve performance. This is all bit-for-bit. larson-group/cam#129 2021-04-09 17:29:56 -05000b60550541c0d76dcc5a42894822d0d3c4899b7cAdding 2D subroutine versions of some functions to improve performance. This is all bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90editpdf_utilities.F90setup_clubb_pdf_params.F9075c4cd9461c1cca785c96bb85d5bad923b3084151618014437000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSome small cleanup, all just formatting. larson-group/cam#129 2021-04-09 19:27:17 -050075c4cd9461c1cca785c96bb85d5bad923b308415Some small cleanup, all just formatting. larson-group/cam#129editsetup_clubb_pdf_params.F90advance_clubb_core_module.F903dafc67dc7207d5794d9a4c66c095e7366e4afbf1618072037000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged ustar from an array to a scalar issue #909 2021-04-10 11:27:17 -05003dafc67dc7207d5794d9a4c66c095e7366e4afbfChanged ustar from an array to a scalar issue #909editadvance_clubb_core_module.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F903c65841d1646f218145bbfc448e694e0b819c0961618079098000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRenamed Ri_zm to sqrt_Ri_zm and iRi_zm to isqrt_Ri_zm #909 2021-04-10 13:24:58 -05003c65841d1646f218145bbfc448e694e0b819c096Renamed Ri_zm to sqrt_Ri_zm and iRi_zm to isqrt_Ri_zm #909editadvance_clubb_core_module.F90editstats_variables.F90editstats_zm_module.F90mixing_length.F90advance_clubb_core_module.F90083074dbb32c7c4fbee30f0ec93ee1108ad00f821618088325000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduCreated new subroutine and ensured it's BFB. All cases run sucessfully #909 2021-04-10 15:58:45 -0500083074dbb32c7c4fbee30f0ec93ee1108ad00f82Created new subroutine and ensured it's BFB. All cases run sucessfully #909editmixing_length.F90editadvance_clubb_core_module.F90mixing_length.F90advance_clubb_core_module.F90cc9e3f188d62b243bb65dfea2082e7b22ad21f7c1618674656000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduadded in missing flag which was causing memory errors #909 2021-04-17 10:50:56 -0500cc9e3f188d62b243bb65dfea2082e7b22ad21f7cadded in missing flag which was causing memory errors #909editmixing_length.F90editadvance_clubb_core_module.F90mixing_length.F905630905cce78e4f538126d288ffeae5ebffb3bd71618679816000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.educonfirmed BFB with e3sam flag set to false and true, no other issues detected in mixing_length #909 2021-04-17 12:16:56 -05005630905cce78e4f538126d288ffeae5ebffb3bd7confirmed BFB with e3sam flag set to false and true, no other issues detected in mixing_length #909editmixing_length.F90stats_zm_module.F902838d3adef376202e2fcf4112c1ee43c94231c721619035906000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate stats_zm_module.F90 Removed units from description to eliminate redundancy. 2021-04-21 15:11:46 -05002838d3adef376202e2fcf4112c1ee43c94231c72Update stats_zm_module.F90editstats_zm_module.F90setup_clubb_pdf_params.F90bb689e837ad32290f9e7cac225a1266db2bed0f11619041140000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding dummy dimensions to calls to procedures that operate over 2 dimensions now, and remove 1D versions of those procedures. larson-group/cam#129 2021-04-21 16:39:00 -0500bb689e837ad32290f9e7cac225a1266db2bed0f1Adding dummy dimensions to calls to procedures that operate over 2 dimensions now, and remove 1D versions of those procedures. larson-group/cam#129editsetup_clubb_pdf_params.F90hydromet_pdf_parameter_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90a8e1b1620d5ae765286eb6469fd893dc19b5e1541619140595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSeparating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129 2021-04-22 20:16:35 -0500a8e1b1620d5ae765286eb6469fd893dc19b5e154Separating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129editsetup_clubb_pdf_params.F90editclubb_api_module.F90edithydromet_pdf_parameter_module.F90silhs_api_module.F90silhs_importance_sample_module.F90latin_hypercube_driver_module.F908a23c35833576ef995f50fdaaff19c901989d3511619140595000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSeparating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129 2021-04-22 20:16:35 -05008a23c35833576ef995f50fdaaff19c901989d351Separating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129editsilhs_importance_sample_module.F90editsilhs_api_module.F90editlatin_hypercube_driver_module.F90precipitation_fraction.F90pdf_utilities.F90setup_clubb_pdf_params.F90clubb_api_module.F909291cc6f06418e89d903e401f04caefe62ee72961619220291000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFormatting and condensing if statements. All bit-for-bit. larson-group/cam#129 2021-04-23 18:24:51 -05009291cc6f06418e89d903e401f04caefe62ee7296Formatting and condensing if statements. All bit-for-bit. larson-group/cam#129editprecipitation_fraction.F90editsetup_clubb_pdf_params.F90editpdf_utilities.F90editclubb_api_module.F90setup_clubb_pdf_params.F90clubb_api_module.F90411f4fc5a1518d746b88dc254811231681d0a6581619223182000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking hydromet_pdf_params optional in setup_pdf_parameters. larson-group/cam#129 2021-04-23 19:13:02 -0500411f4fc5a1518d746b88dc254811231681d0a658Making hydromet_pdf_params optional in setup_pdf_parameters. larson-group/cam#129editclubb_api_module.F90editsetup_clubb_pdf_params.F90advance_clubb_core_module.F90mixing_length.F905733151420dd3f25f57b270e0a6eb4c38e889ea81619555277000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@brock.math.uwm.eduReformatted mixing length to be more compliant with the coding standard #909 2021-04-27 15:27:57 -05005733151420dd3f25f57b270e0a6eb4c38e889ea8Reformatted mixing length to be more compliant with the coding standard #909editadvance_clubb_core_module.F90editmixing_length.F90mixing_length.F909dbd2b39f631f080bb509e1dff6ee5eadb0aebea1619555727000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@brock.math.uwm.eduadded a reference to new subroutine #909 2021-04-27 15:35:27 -05009dbd2b39f631f080bb509e1dff6ee5eadb0aebeaadded a reference to new subroutine #909editmixing_length.F90silhs_api_module.F90est_kessler_microphys_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F90e32474f6f7a50bbc43c9352a829d8f51919fb2541619728413000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129 2021-04-29 15:33:33 -0500e32474f6f7a50bbc43c9352a829d8f51919fb254Adding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129editest_kessler_microphys_module.F90editlatin_hypercube_driver_module.F90editsilhs_api_module.F90editlh_microphys_var_covar_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90numerical_check.F90pdf_closure_module.F90pdf_parameter_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90435b6db3c46b177b9001d80a01dc514a6d7d21081619728413000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129 2021-04-29 15:33:33 -0500435b6db3c46b177b9001d80a01dc514a6d7d2108Adding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129editpdf_closure_module.F90editpdf_parameter_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editsetup_clubb_pdf_params.F90editnumerical_check.F90editstats_clubb_utilities.F90latin_hypercube_driver_module.F9033438476ecd7e056fa1c9acad479f9e5d07275381619732066000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing lines that exceed 100 characters. 2021-04-29 16:34:26 -050033438476ecd7e056fa1c9acad479f9e5d0727538Fixing lines that exceed 100 characters.editlatin_hypercube_driver_module.F90mixing_length.F90input_reader.F90pdf_closure_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F902914cd2f18a991c5aac68c9e4decb9a671bdc24c1619732066000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing lines that exceed 100 characters. 2021-04-29 16:34:26 -05002914cd2f18a991c5aac68c9e4decb9a671bdc24cFixing lines that exceed 100 characters.editpdf_closure_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editinput_reader.F90editsetup_clubb_pdf_params.F90latin_hypercube_driver_module.F906cccc97628f336e094482e6d6b8dd656918e5d1e1619735494000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing loops related to pdf_params down. larson-group/cam#129 2021-04-29 17:31:34 -05006cccc97628f336e094482e6d6b8dd656918e5d1ePushing loops related to pdf_params down. larson-group/cam#129editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90f1f64bdc39de16e140bec54e02a24bfd454349aa1620078062000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.educlubb warnings introduced from merge have been removed #909 2021-05-03 16:41:02 -0500f1f64bdc39de16e140bec54e02a24bfd454349aaclubb warnings introduced from merge have been removed #909editadvance_clubb_core_module.F90stats_zm_module.F90sigma_sqd_w_module.F90c4b005c8774c7fcda4a675f93c5048e8763ddcb51620165243000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@uwm.eduChanged safeguard threshold in sigma_sqd_w. This is BIT_CHANGING. For ticket #917. 2021-05-04 16:54:03 -0500c4b005c8774c7fcda4a675f93c5048e8763ddcb5Changed safeguard threshold in sigma_sqd_w.editsigma_sqd_w_module.F90editstats_zm_module.F90advance_wp2_wp3_module.F90stats_variables.F90stats_zt_module.F900ff19bb07774aa8f1428a14343d3011006c29fe21620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding some new code that puts the diffusion term d(wp2*em)/dz into a new function, creates a new wp3 budget term (wp3_pr_dfsn), and adds that new budget term to pyplotgen. 2021-05-11 08:33:03 -05000ff19bb07774aa8f1428a14343d3011006c29fe2Adding some new code that puts the diffusion term d(wp2*em)/dz into a new function, creates a new wp3 budget term (wp3_pr_dfsn), and adds that new budget term to pyplotgen.editstats_zt_module.F90editadvance_wp2_wp3_module.F90editstats_variables.F90advance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90f45b1489eb4795f960dae317fe379c48a4fa12ab1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding new coefficient to control the wp3 pressure diffusion term. 2021-05-11 08:33:03 -0500f45b1489eb4795f960dae317fe379c48a4fa12abAdding new coefficient to control the wp3 pressure diffusion term.editparameters_tunable.F90editclubb_api_module.F90editadvance_wp2_wp3_module.F90editparameter_indices.F90advance_wp2_wp3_module.F902bb6466cf7c606f404b75d87bdaa24c8a91f83bf1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comSome minor updates to advance_wp2_wp3 relevant to the pr_turb and pr_dfsn terms. 2021-05-11 08:33:03 -05002bb6466cf7c606f404b75d87bdaa24c8a91f83bfSome minor updates to advance_wp2_wp3 relevant to the pr_turb and pr_dfsn terms.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90stats_clubb_utilities.F90f31e107d90fe179831f51a9c36a6f2120ff92f5b1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comConverting em*d(em)/dz to d(em^2)/dz in the wp3_pr_turb term and fixing a typo. 2021-05-11 08:33:03 -0500f31e107d90fe179831f51a9c36a6f2120ff92f5bConverting em*d(em)/dz to d(em^2)/dz in the wp3_pr_turb term and fixing a typo.editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90advance_wp2_wp3_module.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F90940e82e287987a4884a22037d10ec38837f137d41620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comRenaming C_wp3_turb --> C_wp3_pr_turb (BIT_CHANGING due to name change in netcdf output). See #884. 2021-05-11 08:33:03 -0500940e82e287987a4884a22037d10ec38837f137d4Renaming C_wp3_turb --> C_wp3_pr_turb (BIT_CHANGING due to name change in netcdf output).editadvance_wp2_wp3_module.F90editclubb_api_module.F90editparameters_tunable.F90editparameter_indices.F90advance_wp2_wp3_module.F90pdf_closure_module.F90stats_variables.F90advance_clubb_core_module.F90stats_clubb_utilities.F90stats_zm_module.F90de3c925f59bcfd893d04eb2855548136a17e351e1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comThese changes add the new fourth-order moment variables wp2up2 and wp2vp2 to the CLUBB code. This requires a new function in pdf_closure_module since they must be calculated separately with a new formula, and they are fed through into advance_wp2_wp3 for use with the pr_dfsn subroutine. They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING. The new variables are also added to pyplotgen as part of VariableGroupWs.py where wp4 is found. See #920. 2021-05-11 08:33:03 -0500de3c925f59bcfd893d04eb2855548136a17e351eThese changes add the new fourth-order moment variables wp2up2 and wp2vp2 to the CLUBB code. This requires a new function in pdf_closure_module since they must be calculated separately with a new formula, and they are fed through into advance_wp2_wp3 for use with the pr_dfsn subroutine. They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING.editadvance_wp2_wp3_module.F90editstats_variables.F90editadvance_clubb_core_module.F90editpdf_closure_module.F90editstats_clubb_utilities.F90editstats_zm_module.F90advance_wp2_wp3_module.F903e4c7b2d0ba9402c006006c3743bcb9ed918ad4a1620739983000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comPutting the wp3_pr_turb formulation back to its d(rho*wp2*em)/dz form. This would be a BIT_CHANGING commit since it would change the answers for the pr_turb term. However once this branch is merged into the master branch, results should be bit-for-bit since this term was only modified in the alternate branch. See #920. 2021-05-11 08:33:03 -05003e4c7b2d0ba9402c006006c3743bcb9ed918ad4aPutting the wp3_pr_turb formulation back to its d(rho*wp2*em)/dz form. This would be a BIT_CHANGING commit since it would change the answers for the pr_turb term. However once this branch is merged into the master branch, results should be bit-for-bit since this term was only modified in the alternate branch.editadvance_wp2_wp3_module.F90stats_type_utilities.F90advance_clubb_core_module.F90interpolation.F90calc_pressure.F90advance_windm_edsclrm_module.F90advance_helper_module.F903c6fc8de1942c935d48433c37c2250ba655681e51620766665000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@uwm.eduAdded intent comments for the following files: advance_clubb_core_module, advance_helper_module, and advance_windm_edsclrm_module. These changes are BFB. For ticket #924. 2021-05-11 15:57:45 -05003c6fc8de1942c935d48433c37c2250ba655681e5Added intent comments for the following files:editadvance_clubb_core_module.F90editinterpolation.F90editstats_type_utilities.F90editcalc_pressure.F90editadvance_windm_edsclrm_module.F90editadvance_helper_module.F90advance_clubb_core_module.F90pdf_closure_module.F900799b154b8dd0feb9ebe8189be0f004b142d08a31620868004000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comRemoving "if" statement around calculation of wp4 in pdf_closure_module.F90 and the same "if" statement around some further manipulation of wp4 in advance_clubb_core. Results are bit-for-bit with this change, since normally all cases calculate wp4 anyway since the "if" condition was always satisfied in normal runs (but not, for example, in some tuning runs). This was done because the new wp3_pr_dfsn term needs wp4 in its current formulation so it needs to always be calculated. See #920. 2021-05-12 20:06:44 -05000799b154b8dd0feb9ebe8189be0f004b142d08a3Removing "if" statement around calculation of wp4 in pdf_closure_module.F90 and the same "if" statement around some further manipulation of wp4 in advance_clubb_core. Results are bit-for-bit with this change, since normally all cases calculate wp4 anyway since the "if" condition was always satisfied in normal runs (but not, for example, in some tuning runs). This was done because the new wp3_pr_dfsn term needs wp4 in its current formulation so it needs to always be calculated.editadvance_clubb_core_module.F90editpdf_closure_module.F90advance_clubb_core_module.F904637d2f68f4d5b3fa73a677f17e83669b2d363341620911586000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comRemoving some "use" statement variables from advance_clubb_core, since they are no longer used here but are now used in mixing_length.F90. See #909. 2021-05-13 08:13:06 -05004637d2f68f4d5b3fa73a677f17e83669b2d36334Removing some "use" statement variables from advance_clubb_core, since they are no longer used here but are now used in mixing_length.F90.editadvance_clubb_core_module.F90advance_helper_module.F904856129fd79896091b3eecfdcdaab73c812e607e1620921894000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixed comment regarding wp3 splatting term. 2021-05-13 11:04:54 -05004856129fd79896091b3eecfdcdaab73c812e607eFixed comment regarding wp3 splatting term.editadvance_helper_module.F90advance_wp2_wp3_module.F90clip_explicit.F909833dff319c94c1908ae15e112a800a3587f5df31621706433000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments. For file advance_wp2_wp3_module.F90. Results are confirmed to be BFB. For ticket #924. 2021-05-22 13:00:33 -05009833dff319c94c1908ae15e112a800a3587f5df3Added intent comments.editclip_explicit.F90editadvance_wp2_wp3_module.F90pos_definite_module.F90advance_xm_wpxp_module.F90lapack_wrap.F90mono_flux_limiter.F906559732d33be2ec8f4ebc58a5ec029d4549ccc351621710963000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments. For the file advance_xm_wpxp_module.F90. I also changed the order of arguments in certain arugment lists to conform to the coding standard. Changes confirmed to be BFB. For ticket #924. 2021-05-22 14:16:03 -05006559732d33be2ec8f4ebc58a5ec029d4549ccc35Added intent comments.editpos_definite_module.F90editlapack_wrap.F90editadvance_xm_wpxp_module.F90editmono_flux_limiter.F90advance_xp2_xpyp_module.F90advance_helper_module.F90d774cff18029de5cc9943c8ea83f4aded41df5b71621713185000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdded intent comments for advance_xp2_xpyp_module.F90. Additionally, I made changes to certain argument lists to better reflect the coding standard. Changed confirmed to be BFB. For ticket #924. 2021-05-22 14:53:05 -0500d774cff18029de5cc9943c8ea83f4aded41df5b7Added intent comments for advance_xp2_xpyp_module.F90.editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90clip_explicit.F907e0741b435d5318010ea92055b2329e08dba34181621951468000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comMakes surface clipping of wp3 consistent with clipping aloft, per #921. This is BIT_CHANGING since it affects how clipping is applied near the surface. 2021-05-25 09:04:28 -05007e0741b435d5318010ea92055b2329e08dba3418Makes surface clipping of wp3 consistent with clipping aloft, per #921. This is BIT_CHANGING since it affects how clipping is applied near the surface.editclip_explicit.F90clip_explicit.F90dbe9250e6217d60ef45b38553618402e151d939d1621951468000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comDeleting comments around the old "magic number" for the near-surface clipping. See #921. 2021-05-25 09:04:28 -0500dbe9250e6217d60ef45b38553618402e151d939dDeleting comments around the old "magic number" for the near-surface clipping.editclip_explicit.F90parameters_tunable.F90332f11bd30bb9aaf57f218d7fe3769e2cc2016701622231456000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing fortran standards violation causing compiler errors with nvfortran. See larson-group/clubb#900 and larson-group/clubb#928. 2021-05-28 14:50:56 -0500332f11bd30bb9aaf57f218d7fe3769e2cc201670Fixing fortran standards violation causing compiler errors with nvfortran. See larson-group/clubb#900 and larson-group/clubb#928.editparameters_tunable.F90parameters_tunable.F90new_hybrid_pdf_main.F90advance_helper_module.F90242a46454b543774c56a2c6b15b74b86eaf5b5bc1622648527000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged some elements of clubb to allow for better script execution 2021-06-02 10:42:07 -0500242a46454b543774c56a2c6b15b74b86eaf5b5bcChanged some elements of clubb to allow for better script executioneditparameters_tunable.F90editnew_hybrid_pdf_main.F90editadvance_helper_module.F90advance_helper_module.F90153d245615688f92096d7ef460fb65d04f97571e1622651931000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed clubb not compiling 2021-06-02 11:38:51 -0500153d245615688f92096d7ef460fb65d04f97571eFixed clubb not compilingeditadvance_helper_module.F90advance_xm_wpxp_module.F90clip_explicit.F90clubb_api_module.F90stats_type_utilities.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90mixing_length.F90new_tsdadg_pdf.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90LY93_pdf.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90calc_pressure.F90diffusion.F90numerical_check.F90pos_definite_module.F90parameters_tunable.F90sponge_layer_damping.F90new_pdf.F90turbulent_adv_pdf.F90advance_xp3_module.F90advance_clubb_core_module.F90mean_adv.F90fill_holes.F90stats_clubb_utilities.F90fdcdbc1e4834f13714c9d2a4464cd02dc410b0321622741937000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through the arg list where need only in the CLUBB_core dir. Note, that since some of the functions/subroutines in CLUBB_core are used elsewhere throughout clubb, other parts of clubb such as a file in SILHS, and a few in the outer layer of the source folder needed to be updated in order to reflect the changes. However, everything outside of the CLUBB_core directory still uses use statements in order to use gr from grid class. For ticket #886. All changes are confirmed BFB identical. 2021-06-03 12:38:57 -0500fdcdbc1e4834f13714c9d2a4464cd02dc410b032Feeding gr through the arg list where need only in the CLUBB_core dir.editnew_pdf_main.F90editpdf_closure_module.F90editnumerical_check.F90editsponge_layer_damping.F90editmono_flux_limiter.F90editpos_definite_module.F90editdiffusion.F90editturbulent_adv_pdf.F90editSkx_module.F90editmixing_length.F90editsetup_clubb_pdf_params.F90editnew_hybrid_pdf_main.F90editadvance_xp3_module.F90editadvance_helper_module.F90editcalc_pressure.F90editadvance_xm_wpxp_module.F90editnew_tsdadg_pdf.F90editadvance_windm_edsclrm_module.F90editmean_adv.F90editstats_clubb_utilities.F90editstats_type_utilities.F90editadvance_xp2_xpyp_module.F90editLY93_pdf.F90editadvance_clubb_core_module.F90editfill_holes.F90editadvance_wp2_wp3_module.F90editparameters_tunable.F90editnew_pdf.F90editadg1_adg2_3d_luhar_pdf.F90editclip_explicit.F90editclubb_api_module.F90latin_hypercube_driver_module.F90b8be2708ee69c2ba48379def5c0cb16c852f36111622741937000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through the arg list where need only in the CLUBB_core dir. Note, that since some of the functions/subroutines in CLUBB_core are used elsewhere throughout clubb, other parts of clubb such as a file in SILHS, and a few in the outer layer of the source folder needed to be updated in order to reflect the changes. However, everything outside of the CLUBB_core directory still uses use statements in order to use gr from grid class. For ticket #886. All changes are confirmed BFB identical. 2021-06-03 12:38:57 -0500b8be2708ee69c2ba48379def5c0cb16c852f3611Feeding gr through the arg list where need only in the CLUBB_core dir.editlatin_hypercube_driver_module.F90clubb_api_module.F900b4086681549ba1ade7cd159f63992e231de132b1622745453000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReverted changes to clubb_api. For #886 2021-06-03 13:37:33 -05000b4086681549ba1ade7cd159f63992e231de132bReverted changes to clubb_api. For #886editclubb_api_module.F90clip_explicit.F90clubb_api_module.F90advance_xm_wpxp_module.F90numerical_check.F90new_pdf.F90new_pdf_main.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90LY93_pdf.F90fill_holes.F90Skx_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90ac4315a4656171d60e7612e105a31aa2bf1086871622821498000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReplacing use gr statements with feeding gr throught the arg list. This commit is for slight improvement to the script in order to better adhere to the coding standard. For ticket #886. Results confirmed to be BFB identical. 2021-06-04 10:44:58 -0500ac4315a4656171d60e7612e105a31aa2bf108687Replacing use gr statements with feeding gr throught the arg list.editadg1_adg2_3d_luhar_pdf.F90editadvance_xp3_module.F90editnumerical_check.F90editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90editnew_pdf_main.F90editmono_flux_limiter.F90editadvance_clubb_core_module.F90editmixing_length.F90editclip_explicit.F90editclubb_api_module.F90editSkx_module.F90editnew_pdf.F90editLY93_pdf.F90editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editadvance_windm_edsclrm_module.F90editfill_holes.F90editpdf_closure_module.F90advance_xm_wpxp_module.F90clip_explicit.F90Nc_Ncn_eqns.F90calc_roots.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90advance_helper_module.F90advance_wp2_wp3_module.F90mixing_length.F90pdf_utilities.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90Skx_module.F90calc_pressure.F90index_mapping.F90clip_semi_implicit.F90numerical_check.F90pos_definite_module.F90output_netcdf.F90stats_lh_sfc_module.F90hydromet_pdf_parameter_module.F90saturation.F90advance_xp3_module.F90mean_adv.F90stats_zt_module.F90stats_sfc_module.F90sigma_sqd_w_module.F90stats_zm_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90stats_lh_zt_module.F90input_reader.F90diagnose_correlations_module.F90stats_type_utilities.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90new_hybrid_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90precipitation_fraction.F90diffusion.F90endian.F90parameters_tunable.F90pdf_parameter_module.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90stats_clubb_utilities.F90interpolation.F90T_in_K_module.F90sfc_varnce_module.F90b2e07aedb378d4a517568df6fd3bad22c525cb101623083951000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding proper indentation to needed files. The purpose of this commit is to make the indentation uniform across clubb in order to make script execution easier for replacing gr occurances across clubb. Related to ticket #886. Results are BFB identical. 2021-06-07 11:39:11 -0500b2e07aedb378d4a517568df6fd3bad22c525cb10Adding proper indentation to needed files.editadvance_xm_wpxp_module.F90editparameters_model.F90editstats_clubb_utilities.F90editclip_semi_implicit.F90editfill_holes.F90editinterpolation.F90editSkx_module.F90editlapack_wrap.F90editstats_lh_zt_module.F90edithydromet_pdf_parameter_module.F90editdiffusion.F90editnew_hybrid_pdf.F90editprecipitation_fraction.F90editdiagnose_correlations_module.F90editmono_flux_limiter.F90editnew_tsdadg_pdf.F90editLY93_pdf.F90editgrid_class.F90editNc_Ncn_eqns.F90editnew_hybrid_pdf_main.F90editnew_pdf_main.F90editpos_definite_module.F90editadvance_wp2_wp3_module.F90editstats_sfc_module.F90editcorr_varnce_module.F90editmixing_length.F90editnew_pdf.F90editpdf_utilities.F90editsaturation.F90editcalendar.F90editadvance_windm_edsclrm_module.F90editcalc_pressure.F90editparameters_tunable.F90editstats_rad_zt_module.F90editstats_zm_module.F90editoutput_grads.F90editoutput_netcdf.F90editindex_mapping.F90editturbulent_adv_pdf.F90editinput_reader.F90editfile_functions.F90editsfc_varnce_module.F90editstats_type_utilities.F90editnumerical_check.F90editT_in_K_module.F90editadvance_xp2_xpyp_module.F90editmean_adv.F90editcalc_roots.F90editadvance_helper_module.F90editpdf_closure_module.F90editclubb_api_module.F90editstats_lh_sfc_module.F90editadg1_adg2_3d_luhar_pdf.F90editsigma_sqd_w_module.F90editstats_rad_zm_module.F90editadvance_xp3_module.F90editclip_explicit.F90editmatrix_operations.F90editendian.F90editsponge_layer_damping.F90editsetup_clubb_pdf_params.F90editstats_zt_module.F90editadvance_clubb_core_module.F90editpdf_parameter_module.F90advance_xm_wpxp_module.F90clip_explicit.F90Nc_Ncn_eqns.F90calc_roots.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mixing_length.F90advance_wp2_wp3_module.F90pdf_utilities.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90Skx_module.F90calc_pressure.F90index_mapping.F90clip_semi_implicit.F90numerical_check.F90output_netcdf.F90pos_definite_module.F90stats_lh_sfc_module.F90hydromet_pdf_parameter_module.F90saturation.F90advance_xp3_module.F90stats_zt_module.F90mean_adv.F90stats_sfc_module.F90sigma_sqd_w_module.F90stats_zm_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90stats_lh_zt_module.F90input_reader.F90stats_type_utilities.F90diagnose_correlations_module.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90new_hybrid_pdf.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90precipitation_fraction.F90diffusion.F90endian.F90pdf_parameter_module.F90parameters_tunable.F90new_pdf.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90interpolation.F90stats_clubb_utilities.F90T_in_K_module.F90sfc_varnce_module.F90682a70d581028bc852664c1bae4c9691d120f87d1623087742000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing spacing issue on blank lines. #886 2021-06-07 12:42:22 -0500682a70d581028bc852664c1bae4c9691d120f87dFixing spacing issue on blank lines. #886editclubb_api_module.F90editT_in_K_module.F90editsfc_varnce_module.F90editadvance_clubb_core_module.F90editclip_semi_implicit.F90editparameters_model.F90editnew_pdf.F90editsponge_layer_damping.F90editstats_sfc_module.F90editstats_zm_module.F90editnew_tsdadg_pdf.F90editnew_hybrid_pdf.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editstats_lh_sfc_module.F90editstats_zt_module.F90editstats_rad_zm_module.F90editcalc_pressure.F90edithydromet_pdf_parameter_module.F90editadvance_helper_module.F90editadvance_xp2_xpyp_module.F90editpdf_closure_module.F90editsaturation.F90editnew_pdf_main.F90editgrid_class.F90editoutput_grads.F90editsigma_sqd_w_module.F90editturbulent_adv_pdf.F90editLY93_pdf.F90editlapack_wrap.F90editnumerical_check.F90editadvance_xp3_module.F90editinterpolation.F90editmean_adv.F90editsetup_clubb_pdf_params.F90editcalc_roots.F90editstats_rad_zt_module.F90editstats_type_utilities.F90editdiffusion.F90editoutput_netcdf.F90editpos_definite_module.F90editcalendar.F90editmatrix_operations.F90editpdf_parameter_module.F90editmixing_length.F90editendian.F90editstats_clubb_utilities.F90editparameters_tunable.F90editadg1_adg2_3d_luhar_pdf.F90editcorr_varnce_module.F90editstats_lh_zt_module.F90editfill_holes.F90editadvance_windm_edsclrm_module.F90editfile_functions.F90editprecipitation_fraction.F90editdiagnose_correlations_module.F90editindex_mapping.F90editadvance_wp2_wp3_module.F90editSkx_module.F90editnew_hybrid_pdf_main.F90editclip_explicit.F90editpdf_utilities.F90editinput_reader.F90editNc_Ncn_eqns.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90numerical_check.F90output_netcdf.F90diagnose_correlations_module.F90grid_class.F90sponge_layer_damping.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90output_grads.F90advance_clubb_core_module.F90lapack_wrap.F90stats_clubb_utilities.F90interpolation.F90matrix_operations.F90corr_varnce_module.F9068a2ab4afb0a6d86b78f100acfac6052fc6130961623091143000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed comment changes. #886 2021-06-07 13:39:03 -050068a2ab4afb0a6d86b78f100acfac6052fc613096Fixed comment changes. #886editadvance_wp2_wp3_module.F90editclubb_api_module.F90editadvance_xp2_xpyp_module.F90editmatrix_operations.F90editadvance_xm_wpxp_module.F90editsponge_layer_damping.F90editgrid_class.F90editdiffusion.F90editoutput_grads.F90editnumerical_check.F90editstats_clubb_utilities.F90editcorr_varnce_module.F90editdiagnose_correlations_module.F90editinterpolation.F90editlapack_wrap.F90editadvance_clubb_core_module.F90editoutput_netcdf.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90new_pdf.F90setup_clubb_pdf_params.F90advance_helper_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90fill_holes.F90pdf_closure_module.F90stats_clubb_utilities.F9024d2d6e02bddf69942f70e2e54d1955d9e52a1841623091511000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed incorrect spacing on use 2021-06-07 13:45:11 -050024d2d6e02bddf69942f70e2e54d1955d9e52a184Fixed incorrect spacing on useeditfile_functions.F90editpdf_closure_module.F90editdiffusion.F90editfill_holes.F90editnew_hybrid_pdf.F90editadvance_xp2_xpyp_module.F90editadvance_helper_module.F90editstats_clubb_utilities.F90editstats_zt_module.F90editclubb_api_module.F90editmixing_length.F90editnew_pdf.F90editadvance_clubb_core_module.F90editsetup_clubb_pdf_params.F90editadvance_xm_wpxp_module.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90new_pdf.F90setup_clubb_pdf_params.F90advance_helper_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90fill_holes.F90pdf_closure_module.F90stats_clubb_utilities.F905427e211e24f065ce2c7f82da5b8f69e33e35b8d1623092331000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRevert "Fixed incorrect spacing on use" This reverts commit 76d990d7b5c9eff30a359fbc4709d9278dc2eb2b. 2021-06-07 13:58:51 -05005427e211e24f065ce2c7f82da5b8f69e33e35b8dRevert "Fixed incorrect spacing on use"editclubb_api_module.F90editnew_hybrid_pdf.F90editadvance_xm_wpxp_module.F90editfill_holes.F90editpdf_closure_module.F90editadvance_helper_module.F90editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editnew_pdf.F90editstats_zt_module.F90editmixing_length.F90editfile_functions.F90editdiffusion.F90editsetup_clubb_pdf_params.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F90c3e921120e4a8ecb5da2345ee56e32dd582908481623092618000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing 2021-06-07 14:03:38 -0500c3e921120e4a8ecb5da2345ee56e32dd58290848Fixed spacingeditadvance_clubb_core_module.F90editmixing_length.F90editnew_hybrid_pdf.F90editnew_pdf.F90editfile_functions.F90editstats_clubb_utilities.F90editclubb_api_module.F90editpdf_closure_module.F90editadvance_helper_module.F90editdiffusion.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90clubb_api_module.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F902e02d7f843134d047e78118076171e3e13babb3d1623094110000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing going too far 2021-06-07 14:28:30 -05002e02d7f843134d047e78118076171e3e13babb3dFixed spacing going too fareditadvance_helper_module.F90editnew_hybrid_pdf.F90editpdf_closure_module.F90editclubb_api_module.F90editfile_functions.F90editmixing_length.F90editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editdiffusion.F90editnew_pdf.F90diffusion.F90clubb_api_module.F90advance_xm_wpxp_module.F90new_pdf.F90setup_clubb_pdf_params.F90advance_helper_module.F90file_functions.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90new_hybrid_pdf.F90stats_zt_module.F90pdf_closure_module.F90stats_clubb_utilities.F90T_in_K_module.F90d3b117d1c334e9f97273a15eac2f3f5527d6b0001623095035000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed comments being pushed over 2021-06-07 14:43:55 -0500d3b117d1c334e9f97273a15eac2f3f5527d6b000Fixed comments being pushed overeditadvance_helper_module.F90editfile_functions.F90editdiffusion.F90editclubb_api_module.F90editnew_hybrid_pdf.F90editstats_zt_module.F90editpdf_closure_module.F90editnew_pdf.F90editadvance_clubb_core_module.F90editT_in_K_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editsetup_clubb_pdf_params.F90editstats_clubb_utilities.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90clubb_api_module.F90new_hybrid_pdf.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90advance_helper_module.F90fe3ae735b4f499d039623a5ee0d772e084f6b8ac1623160082000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed not all variables being indented properly 2021-06-08 08:48:02 -0500fe3ae735b4f499d039623a5ee0d772e084f6b8acFixed not all variables being indented properlyeditadvance_helper_module.F90editnew_pdf.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editfile_functions.F90editclubb_api_module.F90editstats_clubb_utilities.F90editdiffusion.F90editnew_hybrid_pdf.F90editmixing_length.F90mixing_length.F90file_functions.F90diffusion.F90advance_clubb_core_module.F90new_hybrid_pdf.F90pdf_closure_module.F90stats_clubb_utilities.F90new_pdf.F90a593cc9f999ce4cac08cfbe08b594786ce8dc4231623160508000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed indentation going beyond variables 2021-06-08 08:55:08 -0500a593cc9f999ce4cac08cfbe08b594786ce8dc423Fixed indentation going beyond variableseditpdf_closure_module.F90editdiffusion.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editfile_functions.F90editnew_hybrid_pdf.F90editmixing_length.F90editnew_pdf.F90file_functions.F909b945635dc114c5d74ed06a38fe5106b3e1be3661623161215000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed file_functions indentation being off 2021-06-08 09:06:55 -05009b945635dc114c5d74ed06a38fe5106b3e1be366Fixed file_functions indentation being offeditfile_functions.F90mixing_length.F90diffusion.F90clubb_api_module.F90new_hybrid_pdf.F90pdf_closure_module.F90new_pdf.F90advance_helper_module.F901e40b9d5b6246903ec09aefb1bba47f234f1e42e1623162163000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed indentation on operations being wrong 2021-06-08 09:22:43 -05001e40b9d5b6246903ec09aefb1bba47f234f1e42eFixed indentation on operations being wrongeditclubb_api_module.F90editadvance_helper_module.F90editnew_pdf.F90editdiffusion.F90editnew_hybrid_pdf.F90editmixing_length.F90editpdf_closure_module.F90new_pdf.F90new_hybrid_pdf.F90e9a76e155c9e8c66eb17e0f27ffc04771b0d82d11623162859000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReverted incorrect changes to new_pdf and new_hybrid_pdf 2021-06-08 09:34:19 -0500e9a76e155c9e8c66eb17e0f27ffc04771b0d82d1Reverted incorrect changes to new_pdf and new_hybrid_pdfeditnew_hybrid_pdf.F90editnew_pdf.F90advance_xm_wpxp_module.F90clip_explicit.F90setup_clubb_pdf_params.F90new_pdf_main.F90advance_windm_edsclrm_module.F90advance_helper_module.F90advance_wp2_wp3_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90Skx_module.F90calc_pressure.F90clip_semi_implicit.F90numerical_check.F90output_netcdf.F90pos_definite_module.F90stats_lh_sfc_module.F90saturation.F90advance_xp3_module.F90mean_adv.F90stats_sfc_module.F90parameters_model.F90matrix_operations.F90calendar.F90clubb_api_module.F90stats_lh_zt_module.F90input_reader.F90stats_type_utilities.F90diagnose_correlations_module.F90grid_class.F90mono_flux_limiter.F90new_tsdadg_pdf.F90LY93_pdf.F90stats_rad_zm_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90diffusion.F90endian.F90parameters_tunable.F90sponge_layer_damping.F90new_pdf.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90lapack_wrap.F90fill_holes.F90interpolation.F90stats_clubb_utilities.F90T_in_K_module.F901651f274501bfb73675497070e4d5641d04411fa1623168054000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing issue when adding in gr. BFB identical. For #886. 2021-06-08 11:00:54 -05001651f274501bfb73675497070e4d5641d04411faFixed spacing issue when adding in gr. BFB identical. For #886.editLY93_pdf.F90editendian.F90editmatrix_operations.F90editadvance_wp2_wp3_module.F90editclip_semi_implicit.F90editnew_hybrid_pdf_main.F90editadvance_xm_wpxp_module.F90editSkx_module.F90editT_in_K_module.F90editsetup_clubb_pdf_params.F90editadg1_adg2_3d_luhar_pdf.F90editmean_adv.F90editoutput_netcdf.F90editstats_type_utilities.F90editclip_explicit.F90editadvance_helper_module.F90editcorr_varnce_module.F90editcalc_pressure.F90editfill_holes.F90editnew_pdf_main.F90editmono_flux_limiter.F90editdiagnose_correlations_module.F90editadvance_xp3_module.F90editstats_lh_sfc_module.F90editfile_functions.F90editoutput_grads.F90editsponge_layer_damping.F90editparameters_tunable.F90editinterpolation.F90editstats_clubb_utilities.F90editadvance_xp2_xpyp_module.F90editdiffusion.F90editpos_definite_module.F90editstats_lh_zt_module.F90editadvance_windm_edsclrm_module.F90editnew_tsdadg_pdf.F90editstats_rad_zm_module.F90editnew_pdf.F90editstats_sfc_module.F90editturbulent_adv_pdf.F90editadvance_clubb_core_module.F90editcalendar.F90editparameters_model.F90editmixing_length.F90editsaturation.F90editinput_reader.F90editlapack_wrap.F90editnumerical_check.F90editclubb_api_module.F90editgrid_class.F90editpdf_closure_module.F90latin_hypercube_driver_module.F90e79fc26972ad2e909bf545778f1b42bbc2780b321623168054000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixed spacing issue when adding in gr. BFB identical. For #886. 2021-06-08 11:00:54 -0500e79fc26972ad2e909bf545778f1b42bbc2780b32Fixed spacing issue when adding in gr. BFB identical. For #886.editlatin_hypercube_driver_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90pos_definite_module.F90grid_class.F90setup_clubb_pdf_params.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90calc_pressure.F907bda97ac8ad514e02e6e6ad3e2562d52d5c071421623708447000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving gr as a module variable from grid_class. gr is now a module variable in clubb_api_module. This was done in order to not break host models. Additonally, gr is now being fed through the arg list of all functions and subroutines that use gr within grid_class. Results are BFB identical. For ticket #886. 2021-06-14 17:07:27 -05007bda97ac8ad514e02e6e6ad3e2562d52d5c07142Removing gr as a module variable from grid_class.editadvance_helper_module.F90editgrid_class.F90editsetup_clubb_pdf_params.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editcalc_pressure.F90editadvance_wp2_wp3_module.F90editmixing_length.F90editadvance_xp3_module.F90editpos_definite_module.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editmono_flux_limiter.F90latin_hypercube_driver_module.F90fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ec1623708447000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving gr as a module variable from grid_class. gr is now a module variable in clubb_api_module. This was done in order to not break host models. Additonally, gr is now being fed through the arg list of all functions and subroutines that use gr within grid_class. Results are BFB identical. For ticket #886. 2021-06-14 17:07:27 -0500fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ecRemoving gr as a module variable from grid_class.editlatin_hypercube_driver_module.F90stats_zm_module.F908601df2406dafdfdf0d57a77067b9553dc19d6e91623854429000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comFixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format. This is BIT_CHANGING since it will affect the name of the upwp_tp variable in the X_zm.nc netcdf file, but it will not change results. 2021-06-16 09:40:29 -05008601df2406dafdfdf0d57a77067b9553dc19d6e9Fixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format.editstats_zm_module.F90stats_sfc_module.F901978bbce511f3b7a9631d61a8c1028bf2072bfbf1623855537000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing a typo from an earlier commit. See comments in this other commit where a similar typo was fixed: https://github.com/larson-group/clubb/commit/a4f5f736cb16168f40fdc01e454930ffa05fbb4d. 2021-06-16 09:58:57 -05001978bbce511f3b7a9631d61a8c1028bf2072bfbfFixing a typo from an earlier commit.editstats_sfc_module.F90clubb_api_module.F9009858d30f6551ef8ad290e02deecf27b321befd81624289253000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through arg list for functions outside of CLUBB_core. Gr has been removed as a moduler variable from clubb_api_module and has been moved to clubb_driver as the top level moduler variable. There is only one instance where a use clubb_driver gr statement is used and that is within clubb_tuner. Results are BFB identical. For ticket #886. 2021-06-21 10:27:33 -050009858d30f6551ef8ad290e02deecf27b321befd8Feeding gr through arg list for functions outside of CLUBB_core.editclubb_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F9024bc6821388ce95985f023733ada790ec18437781624289253000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFeeding gr through arg list for functions outside of CLUBB_core. Gr has been removed as a moduler variable from clubb_api_module and has been moved to clubb_driver as the top level moduler variable. There is only one instance where a use clubb_driver gr statement is used and that is within clubb_tuner. Results are BFB identical. For ticket #886. 2021-06-21 10:27:33 -050024bc6821388ce95985f023733ada790ec1843778Feeding gr through arg list for functions outside of CLUBB_core.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90grid_class.F90advance_clubb_core_module.F90clubb_api_module.F907c6ca69bbc46a81d7689d02bc7e50835713e1d311624564146000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduMoving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB. 2021-06-24 14:49:06 -05007c6ca69bbc46a81d7689d02bc7e50835713e1d31Moving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB.editgrid_class.F90editadvance_clubb_core_module.F90editclubb_api_module.F90clubb_api_module.F905127df88dd9725018f5dbf4097192088202d7da91624641544000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduThe purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. Please ignore this commit unless everything breaks, in which case this is the reason why everything is broken. 2021-06-25 12:19:04 -05005127df88dd9725018f5dbf4097192088202d7da9The purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. Please ignore this commit unless everything breaks, in which case this is the reason why everything is broken.editclubb_api_module.F90error_code.F90a147663e583384f9f1a925770aecadc6225554d51625077120000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd error header for CLUBB in CAM 2021-06-30 13:18:40 -0500a147663e583384f9f1a925770aecadc6225554d5Add error header for CLUBB in CAMediterror_code.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90pdf_closure_module.F90advance_windm_edsclrm_module.F90advance_helper_module.F90cd3da20176118cbba413ee8f49edca31bce4bbc41625149291000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing the ordering of gr in the clubb_api arg list for affected subroutines. Additionally, this commit removes the clubb code standard violation of exceeding more the 100 characters per line. Lastly, the grid typing is being added to clubb_api_module as a public variable so that the host models have access to the type without having to bypass the api For ticket #886. 2021-07-01 09:21:31 -0500cd3da20176118cbba413ee8f49edca31bce4bbc4Fixing the ordering of gr in the clubb_api arg list for affected subroutines.editmixing_length.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editadvance_xm_wpxp_module.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editadvance_windm_edsclrm_module.F90editdiffusion.F90editpdf_closure_module.F90mixing_length.F90advance_windm_edsclrm_module.F90fd4054ccb17b0f17e0f1b05021ef24866c9f99521625160233000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard violations 2021-07-01 12:23:53 -0500fd4054ccb17b0f17e0f1b05021ef24866c9f9952Fixing coding standard violationseditadvance_windm_edsclrm_module.F90editmixing_length.F90advance_clubb_core_module.F90479e56bfbcbe71564edb1b1c2b123c95e740a7171625696754000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproving error messages in setup_clubb_core. larson-group/e3sm#38 2021-07-07 17:25:54 -0500479e56bfbcbe71564edb1b1c2b123c95e740a717Improving error messages in setup_clubb_core. larson-group/e3sm#38editadvance_clubb_core_module.F90precipitation_fraction.F90advance_xm_wpxp_module.F90clubb_api_module.F90clip_explicit.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_rad_zt_module.F90stats_rad_zm_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_zm_module.F90stats_clubb_utilities.F900295787fe7c55013beb522ef0d58f0d429b03a901626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFeeding stats variables through the argument lists of needed subroutines. The purpose of this commit is to prep clubb for having all stats variables be fed through the argument list in the entirety of clubb and host models where needed. This is for ticket #733. Results have been confirmed to be BFB identical. 2021-07-22 12:07:26 -05000295787fe7c55013beb522ef0d58f0d429b03a90Feeding stats variables through the argument lists of needed subroutines.editstats_sfc_module.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editprecipitation_fraction.F90editstats_zm_module.F90editadvance_wp2_wp3_module.F90editmono_flux_limiter.F90editstats_rad_zt_module.F90editclubb_api_module.F90editadvance_windm_edsclrm_module.F90editstats_rad_zm_module.F90editadvance_xp2_xpyp_module.F90editclip_explicit.F90editfill_holes.F90editsetup_clubb_pdf_params.F90editstats_clubb_utilities.F90editadvance_xp3_module.F90editadvance_helper_module.F90editstats_zt_module.F90precipitation_fraction.F90clubb_api_module.F90advance_xm_wpxp_module.F90clip_explicit.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90advance_helper_module.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F906eef92139f3e787d4c6b2fe9759ab350e749be9f1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing spacing issues along with placing the stats varibales on their own lines. Additionally, this commit relabels arg list intent along with the intent of stats vars. Stats variables are still not in the correct spot in the arg list as per the standard, however, they are on their own line where they are correctly labeled. For ticket #733. Results are confirmed BFB identical. 2021-07-22 12:07:26 -05006eef92139f3e787d4c6b2fe9759ab350e749be9fFixing spacing issues along with placing the stats varibales on their own lines.editadvance_xp3_module.F90editmono_flux_limiter.F90editclubb_api_module.F90editadvance_clubb_core_module.F90editstats_rad_zm_module.F90editstats_zt_module.F90editprecipitation_fraction.F90editstats_rad_zt_module.F90editstats_sfc_module.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editclip_explicit.F90editfill_holes.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90editadvance_helper_module.F90editstats_zm_module.F90editsetup_clubb_pdf_params.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90stats_lh_zt_module.F90stats_lh_sfc_module.F90stats_clubb_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90mono_flux_limiter.F90d5fbfd0ad95031e40271cc6c706122f1565d29241626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comChanging more subroutines to include stats vars in their arg lists. There were a few subroutines that were not detected on the first script for subroutines that would need to be changed. This commit picks up on those subroutines and correctly makes the change. Additionally, this commit also makes the stats vars show up in the same spot consistantly throughout all affected subroutines. For ticket #733. Results are confirmed BFB identical. 2021-07-22 12:07:26 -0500d5fbfd0ad95031e40271cc6c706122f1565d2924Changing more subroutines to include stats vars in their arg lists.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editmono_flux_limiter.F90editadvance_xm_wpxp_module.F90editstats_lh_sfc_module.F90editstats_lh_zt_module.F90editadvance_windm_edsclrm_module.F90editmixing_length.F90editsetup_clubb_pdf_params.F90editstats_clubb_utilities.F90editadvance_xp2_xpyp_module.F90editclubb_api_module.F90stats_clubb_utilities.F90clubb_api_module.F9077d0af2a8bf800247ce6384510b37642d5eb147c1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing incorrect subroutine arg list 2021-07-22 12:07:26 -050077d0af2a8bf800247ce6384510b37642d5eb147cFixing incorrect subroutine arg listeditstats_clubb_utilities.F90editclubb_api_module.F90stats_clubb_utilities.F90clubb_api_module.F90d13ff64ce37dfe05703c7f5feca642a0d79294611626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing host models not compiling. Host models now compile. For ticket #733 Results remain BFB identical. 2021-07-22 12:07:26 -0500d13ff64ce37dfe05703c7f5feca642a0d7929461Fixing host models not compiling.editclubb_api_module.F90editstats_clubb_utilities.F90precipitation_fraction.F90advance_xm_wpxp_module.F90clubb_api_module.F90clip_explicit.F90stats_lh_zt_module.F90stats_lh_sfc_module.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F90ccebf94a0df8e2ea3c8aed4a2f5310abcf23976b1626973646000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing argument list so that way the coding standard is upheld. For ticket #733. Results remain BFB identical. 2021-07-22 12:07:26 -0500ccebf94a0df8e2ea3c8aed4a2f5310abcf23976bFixing argument list so that way the coding standard is upheld.editadvance_xm_wpxp_module.F90editfill_holes.F90editstats_clubb_utilities.F90editstats_lh_sfc_module.F90editclubb_api_module.F90editstats_rad_zm_module.F90editsetup_clubb_pdf_params.F90editstats_lh_zt_module.F90editprecipitation_fraction.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editstats_zm_module.F90editstats_rad_zt_module.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90editclip_explicit.F90editmixing_length.F90editadvance_helper_module.F90editstats_sfc_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp3_module.F90editmono_flux_limiter.F90new_hybrid_pdf_main.F903521e3a711eb77add3f4e847ccb466c1a202b91e1627072017000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the name to calc_responder_driver because I thought that calc_responder_var_lev (which it had recently been changed to) wasn't very fitting. 2021-07-23 15:26:57 -05003521e3a711eb77add3f4e847ccb466c1a202b91eI changed the name to calc_responder_driver because I thought thateditnew_hybrid_pdf_main.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90parameter_indices.F90stats_zt_module.F90pdf_closure_module.F90parameters_tunable.F90stats_clubb_utilities.F90stats_variables.F90stats_zm_module.F909804df96e177cde81e75b0c5a8e58b7d7425564a1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comCode changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920. This is BIT_CHANGING, but only because it will introduce some new output variables in the netcdf files. It will not affect results currently since the pressure diffusion coefficient is set to zero. 2021-07-26 13:22:53 -05009804df96e177cde81e75b0c5a8e58b7d7425564aCode changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920.editadvance_clubb_core_module.F90editparameters_tunable.F90editpdf_closure_module.F90editstats_clubb_utilities.F90editadvance_wp2_wp3_module.F90editstats_variables.F90editparameter_indices.F90editstats_zm_module.F90editstats_zt_module.F90advance_wp2_wp3_module.F90c65a56c6e983570429eb26e39c141632068f8c6c1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing comment for the wp2_term_pr_dfsn subroutine. Related to #920. 2021-07-26 13:22:53 -0500c65a56c6e983570429eb26e39c141632068f8c6cFixing comment for the wp2_term_pr_dfsn subroutine. Related to #920.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90467f228ea4cef740a258bb2161503c2cfcfffb211627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920. 2021-07-26 13:22:53 -0500467f228ea4cef740a258bb2161503c2cfcfffb21Updating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F9098f49a6825f2babc94b700d70e39e0539a7cc2541627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comMaking requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920. 2021-07-26 13:22:53 -050098f49a6825f2babc94b700d70e39e0539a7cc254Making requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920.editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90stats_clubb_utilities.F904b64520fe5255ba8d66fece5639907f2f6aa61db1627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing some comments. 2021-07-26 13:22:53 -05004b64520fe5255ba8d66fece5639907f2f6aa61dbFixing some comments.editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editstats_clubb_utilities.F90pdf_closure_module.F90stats_zt_module.F90523614e1b29f4f63efa12eec0e45bb586811122a1627331205000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920. 2021-07-26 15:26:45 -0500523614e1b29f4f63efa12eec0e45bb586811122aCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920.editpdf_closure_module.F90editstats_zt_module.F90stats_variables.F90clubb_api_module.F900a931b874d79ba2f749da6be1c80f9be039388eb1627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -05000a931b874d79ba2f749da6be1c80f9be039388ebMoving the stats variables to module variables of clubb_driver.editstats_variables.F90editclubb_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F90bad9a3eb391637b1ff6c9df434e237e1088b10df1627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -0500bad9a3eb391637b1ff6c9df434e237e1088b10dfMoving the stats variables to module variables of clubb_driver.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F90advance_xp2_xpyp_module.F9082f133b444e8397d161e498331b5cbaefbb1a9921627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -050082f133b444e8397d161e498331b5cbaefbb1a992Fixing coding standard viloation of lines exceeding 100 characters.editsetup_clubb_pdf_params.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90silhs_api_module.F90be45e7398fb94d31cb5e3b967809bc3652bd2a451627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -0500be45e7398fb94d31cb5e3b967809bc3652bd2a45Fixing coding standard viloation of lines exceeding 100 characters.editsilhs_api_module.F90advance_wp2_wp3_module.F90parameters_tunable.F90stats_variables.F90parameter_indices.F90stats_zt_module.F90bd7552a5cd558f1086549641269ef5391cf585b91627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920. This is not set up to change results currently, since the coefficient of the new term is zero, but it is BIT_CHANGING since it will include new output in the netcdf files. Also includes updates to pyplotgen to accommodate the new term. 2021-07-29 12:28:21 -0500bd7552a5cd558f1086549641269ef5391cf585b9Adding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920.editparameter_indices.F90editparameters_tunable.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90editstats_variables.F90parameters_tunable.F90advance_wp2_wp3_module.F90stats_zt_module.F90b8bad9e4a98d18e532dddc063856d55cd1456ab41627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comChanging the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero. Related to #920. 2021-07-29 12:28:21 -0500b8bad9e4a98d18e532dddc063856d55cd1456ab4Changing the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero.editparameters_tunable.F90editadvance_wp2_wp3_module.F90editstats_zt_module.F90setup_clubb_pdf_params.F9034cf74a954230451ecf06007e9b5dd8ead72c8a31627654958000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving l_interp_prescribed_params from setup_clubb_pdf_params. The flag has been removed and so has any code underneat a logic statement involving this statement unless it has multiple flags. The else statement in the if block involving this flag has been set to execute without an if block. For ticket #916 Results are BFB identical. Additionally, complex logic statements with the use of more flags had those flags adjusted and BFB results were also confirmed with these changes. 2021-07-30 09:22:38 -050034cf74a954230451ecf06007e9b5dd8ead72c8a3Removing l_interp_prescribed_params from setup_clubb_pdf_params.editsetup_clubb_pdf_params.F90calendar.F90clubb_api_module.F90clip_explicit.F90input_reader.F90diagnose_correlations_module.F90grid_class.F90setup_clubb_pdf_params.F90mono_flux_limiter.F90mixing_length.F90advance_wp2_wp3_module.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zt_module.F90stats_rad_zm_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90code_timer_module.F90corr_varnce_module.F90precipitation_fraction.F90clip_semi_implicit.F90numerical_check.F90output_netcdf.F90mt95.f90parameters_tunable.F90pdf_parameter_module.F90sponge_layer_damping.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_zt_module.F90fill_holes.F90stats_zm_module.F90interpolation.F90stats_clubb_utilities.F90sfc_varnce_module.F90matrix_operations.F90e4741e2adf4b6cc29301ba7945131193798c89fa1627927021000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding comments labeling subroutine calls with intent. Goes all the way up until stats_clubb_utils. BFB identical. For ticket #942. 2021-08-02 12:57:01 -0500e4741e2adf4b6cc29301ba7945131193798c89faAdding comments labeling subroutine calls with intent.editmatrix_operations.F90editclip_semi_implicit.F90editadvance_xp2_xpyp_module.F90editfile_functions.F90editoutput_grads.F90editpdf_closure_module.F90editfill_holes.F90editadvance_xp3_module.F90editgrid_class.F90editprecipitation_fraction.F90editcalendar.F90editmixing_length.F90editstats_rad_zt_module.F90editparameters_tunable.F90editstats_zt_module.F90editcode_timer_module.F90editmt95.f90editclubb_api_module.F90editstats_zm_module.F90editinterpolation.F90editclip_explicit.F90editoutput_netcdf.F90editadvance_clubb_core_module.F90editstats_rad_zm_module.F90editadvance_wp2_wp3_module.F90editdiagnose_correlations_module.F90editpdf_parameter_module.F90editsetup_clubb_pdf_params.F90editcorr_varnce_module.F90editmono_flux_limiter.F90editadg1_adg2_3d_luhar_pdf.F90editinput_reader.F90editstats_clubb_utilities.F90editnumerical_check.F90editsfc_varnce_module.F90editsponge_layer_damping.F90output_grads.F90stats_rad_zm_module.F90stats_rad_zt_module.F90stats_lh_zt_module.F90output_netcdf.F90stats_lh_sfc_module.F90stats_type_utilities.F90stats_clubb_utilities.F90fb672a147e82517a40817f2c816018783e1146531628008649000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. All calls to subroutines now have intent comments next to them all the way up through stats_sfc_module. Results are BFB identical. For ticket #942. 2021-08-03 11:37:29 -0500fb672a147e82517a40817f2c816018783e114653Adding intent labels for subroutines throughout clubb.editstats_lh_sfc_module.F90editstats_clubb_utilities.F90editstats_lh_zt_module.F90editstats_rad_zm_module.F90editstats_rad_zt_module.F90editoutput_grads.F90editoutput_netcdf.F90editstats_type_utilities.F90advance_wp2_wp3_module.F90dea9cab76b9e14a4f3139dbeaf18de3ca96526091628009021000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving unnecessary constant from use statement 2021-08-03 11:43:41 -0500dea9cab76b9e14a4f3139dbeaf18de3ca9652609Removing unnecessary constant from use statementeditadvance_wp2_wp3_module.F90parameters_tunable.F90dc17ecf04d73f6aa9fbb48fb7a83cc77b1ad386d1628617949000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_nu_grid_dependent as requested. For ticket #926. Results are BFB identical. 2021-08-10 12:52:29 -0500dc17ecf04d73f6aa9fbb48fb7a83cc77b1ad386dEliminating l_nu_grid_dependent as requested.editparameters_tunable.F90parameters_tunable.F90advance_clubb_core_module.F90c22a22b3ba84044037834f62a458b81b02f637941628620641000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_buoy_mod_Km_zm. For ticket #926 if we use a buoyancy-modified expression for Km_zm. Results are BFB identical. 2021-08-10 13:37:21 -0500c22a22b3ba84044037834f62a458b81b02f63794Eliminating l_use_buoy_mod_Km_zm.editparameters_tunable.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F900e8980b576ec718cf4b7247695ec1f1dc9b70c601628624038000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_iter_xp2_xpyp flag. For ticket #926. Results are BFB identical. 2021-08-10 14:33:58 -05000e8980b576ec718cf4b7247695ec1f1dc9b70c60Eliminating l_iter_xp2_xpyp flag.editadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90bafa3df6283a00134563e5b093f72e304e3352ba1628702483000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_apply_rule_to_pdf_params flag. For ticket #926. Results are BFB identical. 2021-08-11 12:21:23 -0500bafa3df6283a00134563e5b093f72e304e3352baEliminating l_apply_rule_to_pdf_params flag.editadvance_clubb_core_module.F90mean_adv.F9080351a9f31586a6da5e46acb59fd423b2d1c09441628703668000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_ub_const_deriv flag. For ticket #926. Results are BFB identical. 2021-08-11 12:41:08 -050080351a9f31586a6da5e46acb59fd423b2d1c0944Eliminating l_ub_const_deriv flag.editmean_adv.F90interpolation.F905861ea0ed9217c2525090a2f50d4158a97da5a931628705685000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_equation_21 flag. For ticket #926. Results are BFB identical 2021-08-11 13:14:45 -05005861ea0ed9217c2525090a2f50d4158a97da5a93Eliminating l_equation_21 flag.editinterpolation.F90advance_wp2_wp3_module.F901725bbe1b3bd91c664ab406db4e94866accbc0cc1628708452000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_wp3_2nd_buoyancy flag. Code surrounding the flag is still present. For ticket #926. Results are BFB identical. 2021-08-11 14:00:52 -05001725bbe1b3bd91c664ab406db4e94866accbc0ccEliminating l_wp3_2nd_buoyancy flag.editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90895a8f6e2d8b44c47b7f4b8a0b439beafa482b8f1628710372000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_refine_grid_in_cloud and l_interactive_refined. For ticket #926. Results are BFB identical. 2021-08-11 14:32:52 -0500895a8f6e2d8b44c47b7f4b8a0b439beafa482b8fEliminating l_refine_grid_in_cloud and l_interactive_refined.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F907cbdaaf3133b7eedf3a9cdd66e1be178a62c3af21628713599000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_experimental_term_pr2 and l_use_vert_avg_winds For ticket #926 Results are BFB identical. 2021-08-11 15:26:39 -05007cbdaaf3133b7eedf3a9cdd66e1be178a62c3af2Eliminating l_use_experimental_term_pr2 and l_use_vert_avg_windseditadvance_xp2_xpyp_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90a17efb420b3b5c93d2ca5d39e14d36732c3b1a2a1628777541000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_wp3_pr3 flag. For ticket #926. Results are BFB identical. 2021-08-12 09:12:21 -0500a17efb420b3b5c93d2ca5d39e14d36732c3b1a2aEliminating l_use_wp3_pr3 flag.editmodel_flags.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90output_netcdf.F90parameters_tunable.F90model_flags.F90advance_xm_wpxp_module.F90924185803f23f0b081f3719fd41a3396b4753a2a1628781691000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_clip_semi_implicit flag. For ticket #926. This commit is BIT_CHANGING due to how the flag needed to be removed. More details on why this commit is bit changing can be seen on the ticket page. 2021-08-12 10:21:31 -0500924185803f23f0b081f3719fd41a3396b4753a2aEliminating l_clip_semi_implicit flag.editadvance_wp2_wp3_module.F90editoutput_netcdf.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90editparameters_tunable.F90advance_clubb_core_module.F90stats_type_utilities.F90numerical_check.F9052350475884c0c6da4817a725a99ad5746b017f11628783267000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. Remaining files now have intent comments for subroutines. Additionally, all lines are now less than 100 characters. For ticket #942. Results are BFB identical. 2021-08-12 10:47:47 -050052350475884c0c6da4817a725a99ad5746b017f1Adding intent labels for subroutines throughout clubb.editadvance_clubb_core_module.F90editstats_type_utilities.F90editnumerical_check.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90model_flags.F90parameter_indices.F90clubb_api_module.F90output_netcdf.F90stats_clubb_utilities.F90parameters_tunable.F9051022e222d451e836733546815b8f88995c534fe1628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -050051022e222d451e836733546815b8f88995c534feEliminating l_single_C2_Skw flag.editadvance_clubb_core_module.F90editoutput_netcdf.F90editadvance_xp2_xpyp_module.F90editstats_clubb_utilities.F90editmodel_flags.F90editclubb_api_module.F90editparameters_tunable.F90editparameter_indices.F90silhs_api_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F9035ae5cdc76bf5d0be3bc8e6e8b0fe2b3d9f7d1e61628881583000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comEliminating l_single_C2_Skw flag. Additionally, this commit also eliminates C2, C2b, and C2c. Since the flag along with the other variables are output to the .nc files, this commit will be BIT_CHANGING since these variables no longer exist. This is for ticket #926. 2021-08-13 14:06:23 -050035ae5cdc76bf5d0be3bc8e6e8b0fe2b3d9f7d1e6Eliminating l_single_C2_Skw flag.editsilhs_api_module.F90editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90mixing_length.F900154499867b83b4b920a9a873e563f80b10b06061628883473000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_include_ice and sat_ice_ratio. For ticket #926 Results are BFB identical. 2021-08-13 14:37:53 -05000154499867b83b4b920a9a873e563f80b10b0606Eliminating l_include_ice and sat_ice_ratio.editmixing_length.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/clubb/mixing_length.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/clubb/parameter_indices.F90ee774e8857de0dcbb776191fad04370247ba0cf21629208529000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/cam/src/physics/clubb 2021-08-17 08:55:29 -0500ee774e8857de0dcbb776191fad04370247ba0cf2Raw-copy updating components/cam/src/physics/clubbeditcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/mixing_length.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/silhs/output_2D_samples_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F900bb7240d540f4cb5dbc1972fb0be5faeab2a8d3c1629208549000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/cam/src/physics/silhs 2021-08-17 08:55:49 -05000bb7240d540f4cb5dbc1972fb0be5faeab2a8d3cRaw-copy updating components/cam/src/physics/silhseditcomponents/cam/src/physics/silhs/output_2D_samples_module.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfileb55057d9f9723b51db6f39ca1c3c9e99f5a481291629210521000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comSwapping out old intel varible pathing script for the new intel version. 2021-08-17 09:28:41 -0500b55057d9f9723b51db6f39ca1c3c9e99f5a48129Swapping out old intel varible pathing script for the new intel version.editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileadvance_clubb_core_module.F90model_flags.F90clubb_api_module.F9087fade11eec9686b269aed00bb9e08fd131fafe41629213967000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_update_pressure flag. For ticket #926. Results are confirmed to be BFB identical. 2021-08-17 10:26:07 -050087fade11eec9686b269aed00bb9e08fd131fafe4Eliminating l_update_pressure flag.editmodel_flags.F90editclubb_api_module.F90editadvance_clubb_core_module.F90components/cam/src/physics/cam/clubb_intr.F90afcf1b2f065e6727c62a575b76287897c1adceb91629215573000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReflecting changes made to clubb in host models 2021-08-17 10:52:53 -0500afcf1b2f065e6727c62a575b76287897c1adceb9Reflecting changes made to clubb in host modelseditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F9015b2a94e94fe9b3fd8d83d33545e6054ade6ebb01629260455000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/cam/src/physics/clubb 2021-08-17 23:20:55 -050015b2a94e94fe9b3fd8d83d33545e6054ade6ebb0Raw-copy updating components/cam/src/physics/clubbeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90advance_xm_wpxp_module.F9083e7c97e95b713f89982fc94a9a5247d112a1cc91629473006000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_upwind_wpxp_ta flag. For issue #926. Results are confirmed BFB identical. 2021-08-20 10:23:26 -050083e7c97e95b713f89982fc94a9a5247d112a1cc9Eliminating l_upwind_wpxp_ta flag.editadvance_clubb_core_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90editmodel_flags.F90components/cam/src/physics/cam/clubb_intr.F908f334b6f15d90ca25ed7b37a98ffa728cfaf6cff1629473180000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduReflecting changes made to clubb in host models 2021-08-20 10:26:20 -05008f334b6f15d90ca25ed7b37a98ffa728cfaf6cffReflecting changes made to clubb in host modelseditcomponents/cam/src/physics/cam/clubb_intr.F90jenkins_tests/e3sm_run_gfortran_test/Jenkinsfilejenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile9c866dd3d081852e3a2059a6d1b40cfda9a8beaf1629821008000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comAdding steps to display the logs. larson-group/sys_admin#735 2021-08-24 11:03:28 -05009c866dd3d081852e3a2059a6d1b40cfda9a8beafAdding steps to display the logs. larson-group/sys_admin#735editjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileeditjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldchttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/guozhunguozhunhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/savvasavvahttp://carson.math.uwm.edu/jenkins/user/nselkenselkehttp://carson.math.uwm.edu/jenkins/user/roessle9roessle9http://carson.math.uwm.edu/jenkins/user/pbroelspbroelshttp://carson.math.uwm.edu/jenkins/user/nchiefnchiefhttp://carson.math.uwm.edu/jenkins/user/rautrauthttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/hoc_browserhoc_browserhttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/weberjkweberjkhttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82http://carson.math.uwm.edu/jenkins/user/strikestrikehttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/mcfadd34mcfadd34false22http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/22/20http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/20/BRANCHorigin/l_vary_convect_depth_additionTESTe3sm_ne4_silhs_run_gfortran_testStarted by user 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#1818false188125FAILURE1629138526688http://carson.math.uwm.edu/jenkins/view/all/job/branch_e3sm_test/18/advance_wp2_wp3_module.F90advance_clubb_core_module.F90parameter_indices.F90stats_zt_module.F90pdf_closure_module.F90stats_variables.F90stats_zm_module.F90parameters_tunable.F90stats_clubb_utilities.F90c7775211705fd48dec941135fc4a9fd44d2b98b91627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comCode changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920. This is BIT_CHANGING, but only because it will introduce some new output variables in the netcdf files. It will not affect results currently since the pressure diffusion coefficient is set to zero. 2021-07-26 13:22:53 -0500c7775211705fd48dec941135fc4a9fd44d2b98b9Code changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920.editstats_variables.F90editadvance_wp2_wp3_module.F90editstats_zm_module.F90editparameters_tunable.F90editstats_zt_module.F90editpdf_closure_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editparameter_indices.F90advance_wp2_wp3_module.F909da282e948a7779026d75c8251148c3db0c86e081627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing comment for the wp2_term_pr_dfsn subroutine. Related to #920. 2021-07-26 13:22:53 -05009da282e948a7779026d75c8251148c3db0c86e08Fixing comment for the wp2_term_pr_dfsn subroutine. Related to #920.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90f6dcf5918b70b39693d2f4c2396ddf03fb6ef8c21627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920. 2021-07-26 13:22:53 -0500f6dcf5918b70b39693d2f4c2396ddf03fb6ef8c2Updating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920.editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90bdfc25a13cf9388a0cdba98fc9cfded02f0f4f741627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comMaking requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920. 2021-07-26 13:22:53 -0500bdfc25a13cf9388a0cdba98fc9cfded02f0f4f74Making requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920.editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90stats_clubb_utilities.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90c1c60fe744dc2e7e126babeb6548151e13d96a941627323773000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comFixing some comments. 2021-07-26 13:22:53 -0500c1c60fe744dc2e7e126babeb6548151e13d96a94Fixing some comments.editstats_clubb_utilities.F90editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90pdf_closure_module.F90stats_zt_module.F902a15f13230db5f5ca0dddbda5245b0dc67dd707a1627331205000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920. 2021-07-26 15:26:45 -05002a15f13230db5f5ca0dddbda5245b0dc67dd707aCorrecting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920.editstats_zt_module.F90editpdf_closure_module.F90components/cam/src/physics/clubb/new_hybrid_pdf_main.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/cam/clubb_intr.F9056dd734bc405097dec3d397ef2039ceaa5d5688e1627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFeeding stats variables to needed subroutines 2021-07-27 13:07:30 -050056dd734bc405097dec3d397ef2039ceaa5d5688eFeeding stats variables to needed subroutineseditcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90467d598d02e400d292c61eb0fee6563885498d931627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing compiliation errors 2021-07-27 13:07:30 -0500467d598d02e400d292c61eb0fee6563885498d93Fixing compiliation errorseditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F904189cded5f24e9e02d441a120c48a9c37aafa3a11627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing compiliation errors 2021-07-27 13:07:30 -05004189cded5f24e9e02d441a120c48a9c37aafa3a1Fixing compiliation errorseditcomponents/cam/src/physics/cam/clubb_intr.F90nightly_test/clubb_intr.F90233e7c5c8489250b21c205d624d515cc29c11adb1627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comReflecting changes to nightly tests clubb_intr 2021-07-27 13:07:30 -0500233e7c5c8489250b21c205d624d515cc29c11adbReflecting changes to nightly tests clubb_intreditnightly_test/clubb_intr.F90components/cam/src/physics/clubb/new_hybrid_pdf_main.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/stats_variables.F90fa52ac299ce3c9302a1831245ea9b837163ac2bb1627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comRemoving updated clubb and silhs directories 2021-07-27 13:07:30 -0500fa52ac299ce3c9302a1831245ea9b837163ac2bbRemoving updated clubb and silhs directorieseditcomponents/cam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/cam/subcol_SILHS.F90381481560de2313069533eaef92c0c47e188a7021627409250000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comFixing incorrect coding standard 2021-07-27 13:07:30 -0500381481560de2313069533eaef92c0c47e188a702Fixing incorrect coding standardeditcomponents/cam/src/physics/cam/subcol_SILHS.F90stats_variables.F90clubb_api_module.F903e33479b7b92dbd3b3195f0b18730302ae188bd01627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -05003e33479b7b92dbd3b3195f0b18730302ae188bd0Moving the stats variables to module variables of clubb_driver.editstats_variables.F90editclubb_api_module.F90silhs_api_module.F90latin_hypercube_driver_module.F9029b6903d922283c188dba7426812537e02c8a5f81627409573000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comMoving the stats variables to module variables of clubb_driver. This change means I had to modify clubb_api_module's arg list along with other arg lists throughout clubb. Everything compiles and results remain BFB identical. For ticket #733. 2021-07-27 13:12:53 -050029b6903d922283c188dba7426812537e02c8a5f8Moving the stats variables to module variables of clubb_driver.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F90advance_xp2_xpyp_module.F90e542998c8db09fe108f69821eef74868caba2c461627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -0500e542998c8db09fe108f69821eef74868caba2c46Fixing coding standard viloation of lines exceeding 100 characters.editsetup_clubb_pdf_params.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90silhs_api_module.F90d5bdc8fbbb988928416a1fff23ec2592bb6142cd1627569049000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduFixing coding standard viloation of lines exceeding 100 characters. Violations were introduced as a result of changes made by ticket #733, this commit resolves the coding standard violations. Results BFB identical. 2021-07-29 09:30:49 -0500d5bdc8fbbb988928416a1fff23ec2592bb6142cdFixing coding standard viloation of lines exceeding 100 characters.editsilhs_api_module.F90advance_wp2_wp3_module.F90parameters_tunable.F90stats_variables.F90parameter_indices.F90stats_zt_module.F90b1418c5d2b27c7560b6e18d9b05837722e7b13bb1627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920. This is not set up to change results currently, since the coefficient of the new term is zero, but it is BIT_CHANGING since it will include new output in the netcdf files. Also includes updates to pyplotgen to accommodate the new term. 2021-07-29 12:28:21 -0500b1418c5d2b27c7560b6e18d9b05837722e7b13bbAdding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920.editparameters_tunable.F90editstats_variables.F90editparameter_indices.F90editstats_zt_module.F90editadvance_wp2_wp3_module.F90parameters_tunable.F90advance_wp2_wp3_module.F90stats_zt_module.F903c12f9c674cc1a5d8e49b0f2c71ca8e2159fcc991627579701000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comChanging the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero. Related to #920. 2021-07-29 12:28:21 -05003c12f9c674cc1a5d8e49b0f2c71ca8e2159fcc99Changing the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero.editstats_zt_module.F90editparameters_tunable.F90editadvance_wp2_wp3_module.F90setup_clubb_pdf_params.F90d7fab3c6bdd5d928a2f6c377fe38514933d91cae1627654958000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduRemoving l_interp_prescribed_params from setup_clubb_pdf_params. The flag has been removed and so has any code underneat a logic statement involving this statement unless it has multiple flags. The else statement in the if block involving this flag has been set to execute without an if block. For ticket #916 Results are BFB identical. Additionally, complex logic statements with the use of more flags had those flags adjusted and BFB results were also confirmed with these changes. 2021-07-30 09:22:38 -0500d7fab3c6bdd5d928a2f6c377fe38514933d91caeRemoving l_interp_prescribed_params from setup_clubb_pdf_params.editsetup_clubb_pdf_params.F90calendar.F90clubb_api_module.F90clip_explicit.F90input_reader.F90diagnose_correlations_module.F90grid_class.F90setup_clubb_pdf_params.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90file_functions.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zm_module.F90stats_rad_zt_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90code_timer_module.F90corr_varnce_module.F90precipitation_fraction.F90clip_semi_implicit.F90numerical_check.F90output_netcdf.F90mt95.f90parameters_tunable.F90pdf_parameter_module.F90sponge_layer_damping.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_zt_module.F90fill_holes.F90stats_zm_module.F90interpolation.F90stats_clubb_utilities.F90sfc_varnce_module.F90matrix_operations.F903f4568e6d528cb591d7bbdd4b36faea5c65ab97d1627927021000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding comments labeling subroutine calls with intent. Goes all the way up until stats_clubb_utils. BFB identical. For ticket #942. 2021-08-02 12:57:01 -05003f4568e6d528cb591d7bbdd4b36faea5c65ab97dAdding comments labeling subroutine calls with intent.editadvance_clubb_core_module.F90editadvance_xp3_module.F90editstats_zm_module.F90editcode_timer_module.F90editsfc_varnce_module.F90editinterpolation.F90editmono_flux_limiter.F90editcorr_varnce_module.F90editadg1_adg2_3d_luhar_pdf.F90editdiagnose_correlations_module.F90editprecipitation_fraction.F90editfill_holes.F90editoutput_netcdf.F90editadvance_xp2_xpyp_module.F90editparameters_tunable.F90editgrid_class.F90editstats_rad_zm_module.F90editstats_zt_module.F90editoutput_grads.F90editpdf_closure_module.F90editmatrix_operations.F90editmt95.f90editstats_rad_zt_module.F90editsponge_layer_damping.F90editsetup_clubb_pdf_params.F90editclubb_api_module.F90editfile_functions.F90editclip_explicit.F90editpdf_parameter_module.F90editnumerical_check.F90editclip_semi_implicit.F90editadvance_wp2_wp3_module.F90editcalendar.F90editinput_reader.F90editmixing_length.F90editstats_clubb_utilities.F90output_grads.F90stats_rad_zt_module.F90stats_rad_zm_module.F90stats_lh_zt_module.F90output_netcdf.F90stats_lh_sfc_module.F90stats_type_utilities.F90stats_clubb_utilities.F908ae8997357c4cf9424fff53c57a41f07d0e589a51628008649000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. All calls to subroutines now have intent comments next to them all the way up through stats_sfc_module. Results are BFB identical. For ticket #942. 2021-08-03 11:37:29 -05008ae8997357c4cf9424fff53c57a41f07d0e589a5Adding intent labels for subroutines throughout clubb.editstats_lh_zt_module.F90editstats_rad_zt_module.F90editstats_clubb_utilities.F90editstats_rad_zm_module.F90editoutput_netcdf.F90editoutput_grads.F90editstats_lh_sfc_module.F90editstats_type_utilities.F90advance_wp2_wp3_module.F90de5061956ab80fe70758fae3535569ac2577ffca1628009021000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving unnecessary constant from use statement 2021-08-03 11:43:41 -0500de5061956ab80fe70758fae3535569ac2577ffcaRemoving unnecessary constant from use statementeditadvance_wp2_wp3_module.F90diagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/analyze_sensitivity_matrix.py64c6ecec553bf58453380154a81f3849b262da5f1628061213000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnUpdate the diagnostic. Put white boxes on global plot for all regions. Issue #36. 2021-08-04 02:13:33 -050064c6ecec553bf58453380154a81f3849b262da5fUpdate the diagnostic. Put white boxes on global plot for all regions. Issue #36.editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/analyze_sensitivity_matrix.pyeditdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/draw_large_scale.pyeditdiagnostic_v2_0/draw_plots_hoz_3D.pyparameters_tunable.F9031547c8162b2ca222d55734a83f0275949b45b4d1628617949000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_nu_grid_dependent as requested. For ticket #926. Results are BFB identical. 2021-08-10 12:52:29 -050031547c8162b2ca222d55734a83f0275949b45b4dEliminating l_nu_grid_dependent as requested.editparameters_tunable.F90parameters_tunable.F90advance_clubb_core_module.F906e5b373349a82f025de7446b87f5bfd28476e05c1628620641000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_buoy_mod_Km_zm. For ticket #926 if we use a buoyancy-modified expression for Km_zm. Results are BFB identical. 2021-08-10 13:37:21 -05006e5b373349a82f025de7446b87f5bfd28476e05cEliminating l_use_buoy_mod_Km_zm.editparameters_tunable.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90c77d1e61d3b579d49e0fd2ccfe75479b651141741628624038000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_iter_xp2_xpyp flag. For ticket #926. Results are BFB identical. 2021-08-10 14:33:58 -0500c77d1e61d3b579d49e0fd2ccfe75479b65114174Eliminating l_iter_xp2_xpyp flag.editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F9076a87a65732f989e80d89d8cbf1755cc345985c71628702483000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_apply_rule_to_pdf_params flag. For ticket #926. Results are BFB identical. 2021-08-11 12:21:23 -050076a87a65732f989e80d89d8cbf1755cc345985c7Eliminating l_apply_rule_to_pdf_params flag.editadvance_clubb_core_module.F90mean_adv.F905d26a06857f44e9dacecd3a90398832306a35d441628703668000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_ub_const_deriv flag. For ticket #926. Results are BFB identical. 2021-08-11 12:41:08 -05005d26a06857f44e9dacecd3a90398832306a35d44Eliminating l_ub_const_deriv flag.editmean_adv.F90interpolation.F908eafa1e949712db4690b67cdc67ecb4e1aa0d0fc1628705685000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_equation_21 flag. For ticket #926. Results are BFB identical 2021-08-11 13:14:45 -05008eafa1e949712db4690b67cdc67ecb4e1aa0d0fcEliminating l_equation_21 flag.editinterpolation.F90advance_wp2_wp3_module.F90277403a3256e3d2bc78d7689c6cbf46db2779d381628708452000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_wp3_2nd_buoyancy flag. Code surrounding the flag is still present. For ticket #926. Results are BFB identical. 2021-08-11 14:00:52 -0500277403a3256e3d2bc78d7689c6cbf46db2779d38Eliminating l_wp3_2nd_buoyancy flag.editadvance_wp2_wp3_module.F90advance_clubb_core_module.F909072ea2f2525fae365156d81b3868c5fa7649e8a1628710372000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_refine_grid_in_cloud and l_interactive_refined. For ticket #926. Results are BFB identical. 2021-08-11 14:32:52 -05009072ea2f2525fae365156d81b3868c5fa7649e8aEliminating l_refine_grid_in_cloud and l_interactive_refined.editadvance_clubb_core_module.F90advance_clubb_core_module.F90advance_xp2_xpyp_module.F90bf0a2f0ffe74c69148a533e47f60db8ccf1fab4f1628713599000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_experimental_term_pr2 and l_use_vert_avg_winds For ticket #926 Results are BFB identical. 2021-08-11 15:26:39 -0500bf0a2f0ffe74c69148a533e47f60db8ccf1fab4fEliminating l_use_experimental_term_pr2 and l_use_vert_avg_windseditadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F9096b8289cf47870ece5fb23fc50008a2919be70331628777541000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_use_wp3_pr3 flag. For ticket #926. Results are BFB identical. 2021-08-12 09:12:21 -050096b8289cf47870ece5fb23fc50008a2919be7033Eliminating l_use_wp3_pr3 flag.editadvance_wp2_wp3_module.F90editmodel_flags.F90editadvance_clubb_core_module.F90advance_wp2_wp3_module.F90output_netcdf.F90parameters_tunable.F90model_flags.F90advance_xm_wpxp_module.F904bf75cca24dd38c8a3ce3d62332efe876b9ae9a01628781691000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduEliminating l_clip_semi_implicit flag. For ticket #926. This commit is BIT_CHANGING due to how the flag needed to be removed. More details on why this commit is bit changing can be seen on the ticket page. 2021-08-12 10:21:31 -05004bf75cca24dd38c8a3ce3d62332efe876b9ae9a0Eliminating l_clip_semi_implicit flag.editmodel_flags.F90editparameters_tunable.F90editadvance_xm_wpxp_module.F90editoutput_netcdf.F90editadvance_wp2_wp3_module.F90advance_clubb_core_module.F90numerical_check.F90stats_type_utilities.F90c500b18f4ca3e29435b68642ab71147d1334683e1628783267000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduAdding intent labels for subroutines throughout clubb. Remaining files now have intent comments for subroutines. Additionally, all lines are now less than 100 characters. For ticket #942. Results are BFB identical. 2021-08-12 10:47:47 -0500c500b18f4ca3e29435b68642ab71147d1334683eAdding intent labels for subroutines throughout clubb.editadvance_clubb_core_module.F90editnumerical_check.F90editstats_type_utilities.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/silhs/output_2D_samples_module.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/cam/clubb_intr.F90adb0a20c5c54dfe7031121a3299214e349baab2e1628881608000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comCommiting to test host models 2021-08-13 14:06:48 -0500adb0a20c5c54dfe7031121a3299214e349baab2eCommiting to test host modelseditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/silhs/output_2D_samples_module.F90editcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/silhs/output_2D_samples_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/clubb/parameter_indices.F90eb4cdd98a18cb717d699273363e808b85bf268e71628881608000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comReverting changes to clubb and silhs 2021-08-13 14:06:48 -0500eb4cdd98a18cb717d699273363e808b85bf268e7Reverting changes to clubb and 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