BRANCHorigin/masterTESTclubb_bin_diff_regression_gfortran_testStarted by user benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens54482f6cfeafb97563bfd1f5c3f4f19a85a98b1d0f482f6cfeafb97563bfd1f5c3f4f19a85a98b1d0frefs/remotes/origin/broken_uninit_branch482f6cfeafb97563bfd1f5c3f4f19a85a98b1d0f482f6cfeafb97563bfd1f5c3f4f19a85a98b1d0frefs/remotes/origin/broken_uninit_branch5027ea997494b23a928f32489161280adff334596e27ea997494b23a928f32489161280adff334596erefs/remotes/origin/py3_check_budget27ea997494b23a928f32489161280adff334596e27ea997494b23a928f32489161280adff334596erefs/remotes/origin/py3_check_budget4c2430410e13a733d23852dd5abc08bbc6b02307bc2430410e13a733d23852dd5abc08bbc6b02307brefs/remotes/origin/feeding_stats_through_arg_listc2430410e13a733d23852dd5abc08bbc6b02307bc2430410e13a733d23852dd5abc08bbc6b02307brefs/remotes/origin/feeding_stats_through_arg_list55dd43df7acdaec448a6db87daff8537523060d646dd43df7acdaec448a6db87daff8537523060d646refs/remotes/origin/masterdd43df7acdaec448a6db87daff8537523060d646dd43df7acdaec448a6db87daff8537523060d646refs/remotes/origin/masterdd43df7acdaec448a6db87daff8537523060d646dd43df7acdaec448a6db87daff8537523060d646refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#55384081102164branch_clubb_test #5555false5518717FAILURE1666016788869http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/55/jenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfile76698cc92bd01db4d5ec6961903da497768710781654790108000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.eduupdated check budgets balance test to be compatible with branch test for testing python 3 version 2022-06-09 10:55:08 -050076698cc92bd01db4d5ec6961903da49776871078updated check budgets balance test to be compatible with branch test for testing python 3 versioneditjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfilepostprocessing/check_budgets_balance/checkBudget.py.oldpostprocessing/check_budgets_balance/futurizedReadBinaryData.pyjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfilepostprocessing/check_budgets_balance/checkBudget.pyd6f731690a2dfd25e6134ae9db50e4d229caf2831654793385000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.eduupdating check budgets script on main branch 2022-06-09 11:49:45 -0500d6f731690a2dfd25e6134ae9db50e4d229caf283updating check budgets script on main branchaddpostprocessing/check_budgets_balance/futurizedReadBinaryData.pyeditjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfileeditpostprocessing/check_budgets_balance/checkBudget.pyaddpostprocessing/check_budgets_balance/checkBudget.py.oldpostprocessing/check_budgets_balance/futurizedReadBinaryData.pypostprocessing/check_budgets_balance/checkBudget.py04bc78913f3728aa9b2d18c79900cab28cbf00bf1654793595000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.edulast minute addition 2022-06-09 11:53:15 -050004bc78913f3728aa9b2d18c79900cab28cbf00bflast minute additioneditpostprocessing/check_budgets_balance/futurizedReadBinaryData.pyeditpostprocessing/check_budgets_balance/checkBudget.pysrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/pdf_closure_module.F90src/Benchmark_cases/atex.F90src/ice_dfsn_module.F90src/Benchmark_cases/gabls3_night.F90src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90src/CLUBB_core/sponge_layer_damping.F90src/CLUBB_core/mixing_length.F90src/microphys_driver.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/Benchmark_cases/astex_a209.F90src/advance_microphys_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/calc_pressure.F90src/CLUBB_core/advance_helper_module.F90src/hydrostatic_module.F90src/CLUBB_core/diffusion.F90src/CLUBB_core/parameters_tunable.F90src/input_fields.F90src/G_unit_test_types/spurious_source_test.F90src/Benchmark_cases/gabls3.F90src/Morrison_microphys/microphysics.F90src/Benchmark_cases/rico.F90src/SILHS/silhs_api_module.F90src/SILHS/latin_hypercube_driver_module.F90src/CLUBB_core/clip_explicit.F90src/Benchmark_cases/gabls2.F90src/Benchmark_cases/nov11.F90src/Benchmark_cases/mpace_a.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/turbulent_adv_pdf.F90src/Benchmark_cases/bomex.F90src/clubb_driver.F90src/morrison_microphys_module.F90src/simple_rad_module.F90src/CLUBB_core/clubb_api_module.F90src/sounding.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/pos_definite_module.F904ea154dbcb9ca5e8574b32fd350d54bc07fa13a61654818473000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comThe big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB. 2022-06-09 18:47:53 -05004ea154dbcb9ca5e8574b32fd350d54bc07fa13a6The big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB.editsrc/CLUBB_core/parameters_tunable.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/grid_class.F90editsrc/sounding.F90editsrc/Benchmark_cases/bomex.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/Morrison_microphys/microphysics.F90editsrc/microphys_driver.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/Benchmark_cases/nov11.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/Benchmark_cases/gabls3_night.F90editsrc/Benchmark_cases/mpace_a.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/input_fields.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/pos_definite_module.F90editsrc/Benchmark_cases/atex.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/Benchmark_cases/gabls2.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/calc_pressure.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/Benchmark_cases/gabls3.F90editsrc/CLUBB_core/turbulent_adv_pdf.F90editsrc/hydrostatic_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/SILHS/silhs_api_module.F90editsrc/Benchmark_cases/rico.F90editsrc/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90editsrc/ice_dfsn_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/morrison_microphys_module.F90editsrc/simple_rad_module.F90editsrc/CLUBB_core/diffusion.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/Benchmark_cases/astex_a209.F90editsrc/CLUBB_core/sponge_layer_damping.F90editsrc/CLUBB_core/advance_xp3_module.F90utilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/analyze_sensitivity_matrix.py535090d011dedf50d09e27a0f90e1b9a47de0e771654881475000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduAdds to tuning dashboard an arrow plot of biases. Also adds other plots that show regional biases versus sensitivity of those regions to parameter values. For #910. 2022-06-10 12:17:55 -0500535090d011dedf50d09e27a0f90e1b9a47de0e77Adds to tuning dashboard an arrow plot of biases.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pysrc/CLUBB_core/clubb_api_module.F906653f87f2251ad7e1b4331332e799eda6c242fc71654901042000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving the zt2zm interface from clubb_api and making the api calls just redirect to the grid class interface for it. 2022-06-10 17:44:02 -05006653f87f2251ad7e1b4331332e799eda6c242fc7Removing the zt2zm interface from clubb_api and making the api calls just redirect to the grid class interface for it.editsrc/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/mean_adv.F90src/CLUBB_core/advance_xp2_xpyp_module.F90e7ce96456e691ac84abf467670642a8ec90f4bb91654901042000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing column loop into mean advection procedures. 2022-06-10 17:44:02 -0500e7ce96456e691ac84abf467670642a8ec90f4bb9Pushing column loop into mean advection procedures.editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/mean_adv.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90974b54a132f6eb0247cea6b743ff2a44afd2dc581654904676000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comLittle loop push 2022-06-10 18:44:36 -0500974b54a132f6eb0247cea6b743ff2a44afd2dc58Little loop pusheditsrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/turbulent_adv_pdf.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/mean_adv.F902f3542cea1a4dea1b242dd61947087b6458548fb1654904676000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving above/below index of grid weights to last dimension. 2022-06-10 18:44:36 -05002f3542cea1a4dea1b242dd61947087b6458548fbMoving above/below index of grid weights to last dimension.editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/turbulent_adv_pdf.F90editsrc/CLUBB_core/mean_adv.F90src/advance_microphys_module.F908f3f453816a42e196483145786383be3f0305e2c1654926071000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMissed file meant for commit e7ce96456e691ac84abf467670642a8ec90f4bb9. 2022-06-11 00:41:11 -05008f3f453816a42e196483145786383be3f0305e2cMissed file meant for commit e7ce96456e691ac84abf467670642a8ec90f4bb9.editsrc/advance_microphys_module.F90src/advance_microphys_module.F90d31feb5af0bdd3c7912ab3a695188c774ba104391654974536000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging a few spots that use gr%weights that should have been included in commit 2f3542cea1a4dea1b242dd61947087b6458548fb 2022-06-11 14:08:56 -0500d31feb5af0bdd3c7912ab3a695188c774ba10439Changing a few spots that use gr%weights that should have been included in commit 2f3542cea1a4dea1b242dd61947087b6458548fbeditsrc/advance_microphys_module.F90microphysics.F90fa81b26c57d7d3c313848a664f2b677166aed4531655142566000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduHardcoding 1 into uses of gr arrays where single column versions of gr is used. 2022-06-13 12:49:26 -0500fa81b26c57d7d3c313848a664f2b677166aed453Hardcoding 1 into uses of gr arrays where single column versions of gr is used.editmicrophysics.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F907e3ade59aaf71eaad5ee53d35eb6225bc7e4a4781655335624000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comPushing loop into fill_holes. 2022-06-15 18:27:04 -05007e3ade59aaf71eaad5ee53d35eb6225bc7e4a478Pushing loop into fill_holes.editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xm_wpxp_module.F9037e333bad160d830a45ea1a6f86bb5bdc9a773af1655335624000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comForgot small change. 2022-06-15 18:27:04 -050037e333bad160d830a45ea1a6f86bb5bdc9a773afForgot small change.editsrc/CLUBB_core/advance_xm_wpxp_module.F90microphysics.F90a939f12958b7095ff83a25769a51e7fa2715c2361655335675000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-06-15 18:27:55 -0500a939f12958b7095ff83a25769a51e7fa2715c236Making compatible with latest clubb change.editmicrophysics.F90src/CLUBB_core/grid_class.F9031584c490b9c8eeb53e170f84dc4c92ac489ec471655492801000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking linear_interpolated_azt_2D and linear_interpolated_azm_2D subroutines just to avoid a needless data copy. 2022-06-17 14:06:41 -050031584c490b9c8eeb53e170f84dc4c92ac489ec47Making linear_interpolated_azt_2D and linear_interpolated_azm_2D subroutines just to avoid a needless data copy.editsrc/CLUBB_core/grid_class.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90991ebceb8caba2ad56c1125871b7de1de3c04dba1655492801000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking update_xp2_mc 2D and creating interface for 1D calls. 2022-06-17 14:06:41 -0500991ebceb8caba2ad56c1125871b7de1de3c04dbaMaking update_xp2_mc 2D and creating interface for 1D calls.editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90src/microphys_driver.F90a19386022f26aa17da805381904bcde4c59cb5211655684766000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMissed file in previous commit. 2022-06-19 19:26:06 -0500a19386022f26aa17da805381904bcde4c59cb521Missed file in previous commit.editsrc/microphys_driver.F90run_scripts/README382a4b934cf86029803860d98f120752c5ba642a1655747489000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduJust a line to read me, because commit a19386022f26aa17da805381904bcde4c59cb521 fixed the bit diff tests after a previous commit broke it, RESOLVED:991ebceb8caba2ad56c1125871b7de1de3c04dba. 2022-06-20 12:51:29 -0500382a4b934cf86029803860d98f120752c5ba642aJust a line to read me, because commit a19386022f26aa17da805381904bcde4c59cb521 fixed the bit diff tests after a previous commit broke it, RESOLVED:991ebceb8caba2ad56c1125871b7de1de3c04dba.editrun_scripts/READMEsrc/CLUBB_core/stats_zt_module.F9031247021aea2e7fe0095d8018688307d3b40dc631655835945000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing units in stats_zt_module.F90 This change will be BIT_CHANGING because it will affect the descriptions of variables in the netcdf files, but will not change answers. 2022-06-21 12:25:45 -060031247021aea2e7fe0095d8018688307d3b40dc63Fixing units in stats_zt_module.F90editsrc/CLUBB_core/stats_zt_module.F90compile/config/linux_x86_64_nvhpc_casper.bashde436ee5da803c14eaf5642f66aa1f617123799a1655846271000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@crhtc59.hpc.ucar.eduAdding config file for nvhpc on casper. 2022-06-21 15:17:51 -0600de436ee5da803c14eaf5642f66aa1f617123799aAdding config file for nvhpc on casper.addcompile/config/linux_x86_64_nvhpc_casper.bashcompile/config/linux_x86_64_ifort_debug.bashcef5c813eabe0301da9a88d6b705fa9d7f2209a01655927488000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.edumodified clubb_ifort_configuration file to support nan trapping for uninitialized variables 2022-06-22 14:51:28 -0500cef5c813eabe0301da9a88d6b705fa9d7f2209a0modified clubb_ifort_configuration file to support nan trapping for uninitialized variableseditcompile/config/linux_x86_64_ifort_debug.bashjenkins_tests/clubb_ifort_debug_run/Jenkinsfile561be75c79abfa7cc5aa675d7cc08f71aaa748a81655987360000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.edurenamed clubb_ifort_build to clubb_ifort_debug_run and updated jenkinsfile to reflect 2022-06-23 07:29:20 -0500561be75c79abfa7cc5aa675d7cc08f71aaa748a8renamed clubb_ifort_build to clubb_ifort_debug_run and updated jenkinsfile to reflectaddjenkins_tests/clubb_ifort_debug_run/Jenkinsfilejenkins_tests/clubb_ifort_debug_run/Jenkinsfile55dd6efa3f55fc5e5f66914f551c68ed42c17a291655991768000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.eduforgot to change if statements in jenkinsfile 2022-06-23 08:42:48 -050055dd6efa3f55fc5e5f66914f551c68ed42c17a29forgot to change if statements in jenkinsfileeditjenkins_tests/clubb_ifort_debug_run/Jenkinsfilejenkins_tests/clubb_gfortran_debug_run/Jenkinsfilecompile/config/linux_x86_64_gfortran_debug.bashba22685c73efcd0419513e7f8b654c44c13a44d91655998759000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.educreated debug case for gfortran as well as updating jenkins files to work with it, as well as a forgotten change to the ifort debug test jenkinsfile 2022-06-23 10:39:19 -0500ba22685c73efcd0419513e7f8b654c44c13a44d9created debug case for gfortran as well as updating jenkins files to work with it, as well as a forgotten change to the ifort debug test jenkinsfileaddjenkins_tests/clubb_gfortran_debug_run/Jenkinsfileaddcompile/config/linux_x86_64_gfortran_debug.bashutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.py16d052acdaa115b18236bc9159371fbc994fac791657123464000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduAdds to the tuning dashboard a quadratic optimizer. The quadratic optimizer minimizes a quadratic cost function that includes the 2nd-order term in the Taylor series expansion of metrics as a function of parameters. Also uses the high and low parameter values to calculate the sensitivity matrix, rather than the default parameter values. For #910. 2022-07-06 11:04:24 -050016d052acdaa115b18236bc9159371fbc994fac79Adds to the tuning dashboard a quadratic optimizer.editutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyREADME7df3134a817a57d35d1caef90bd1e1863881438d1657635467000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate README Changed Needler to Nelder (as in Nelder-Mead method) 2022-07-12 09:17:47 -05007df3134a817a57d35d1caef90bd1e1863881438dUpdate READMEeditREADMEsrc/clubb_driver.F9033052a4e1b946c8a5411bc8f6c0c34cb3c5ad9a81657648767000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduChanged intent out to inout to fix grid deallocation error during cleanup. 2022-07-12 12:59:27 -050033052a4e1b946c8a5411bc8f6c0c34cb3c5ad9a8Changed intent out to inout to fix grid deallocation error during cleanup.editsrc/clubb_driver.F90input_misc/tuner/error_atex.ininput_misc/tuner/error_arm.ininput_misc/tuner/error_rico.ininput_misc/tuner/error_gabls3_night.ininput_misc/tuner/error_bomex.ininput_misc/tuner/error_nov11_altocu.ininput_misc/tuner/error_four_cases.ininput_misc/tuner/error_dycoms2_rf02_ds.ininput_misc/tuner/error_dycoms2_rf01.ininput_misc/tuner/error_arm_97.ininput_misc/tuner/error_all.ininput_misc/tuner/error_lba.ininput_misc/tuner/error_wangara.ininput_misc/tuner/error_fire.ininput_misc/tuner/error_dycoms2_rf02_do.ininput_misc/tuner/error_gabls2.ininput_misc/tuner/error_dycoms2_rf02_nd.ininput_misc/tuner/error_ticket_756.in7190846a5f3fc7c9d1e95ea462be11a67d521e311657652620000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduAdded a3_coef_min_minmax entry to namelist init_minmax for ALL the tuner input files to prevent error with gfortran compiler (min > max) 2022-07-12 14:03:40 -05007190846a5f3fc7c9d1e95ea462be11a67d521e31Added a3_coef_min_minmax entry to namelist init_minmax for ALL the tuner input files to prevent error with gfortran compiler (min > max)editinput_misc/tuner/error_fire.ineditinput_misc/tuner/error_dycoms2_rf02_ds.ineditinput_misc/tuner/error_ticket_756.ineditinput_misc/tuner/error_arm_97.ineditinput_misc/tuner/error_bomex.ineditinput_misc/tuner/error_dycoms2_rf01.ineditinput_misc/tuner/error_atex.ineditinput_misc/tuner/error_four_cases.ineditinput_misc/tuner/error_wangara.ineditinput_misc/tuner/error_dycoms2_rf02_do.ineditinput_misc/tuner/error_gabls3_night.ineditinput_misc/tuner/error_nov11_altocu.ineditinput_misc/tuner/error_rico.ineditinput_misc/tuner/error_dycoms2_rf02_nd.ineditinput_misc/tuner/error_gabls2.ineditinput_misc/tuner/error_lba.ineditinput_misc/tuner/error_arm.ineditinput_misc/tuner/error_all.insrc/enhanced_simann.F907c0255e0d971f1bc3a5e1c5cda901cdc15db5cdc1657753744000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdded some comments. Changing some variable names might be nicer, loss might make more sense than energy, n1 and n2 are meaningless, etc. 2022-07-13 18:09:04 -05007c0255e0d971f1bc3a5e1c5cda901cdc15db5cdcAdded some comments. Changing some variable names might be nicer, loss might make more sense than energy, n1 and n2 are meaningless, etc.editsrc/enhanced_simann.F90READMEd3c238e4a57f8e988425cded0af8530120f3da471657917654000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdates info on tuner. 2022-07-15 15:40:54 -0500d3c238e4a57f8e988425cded0af8530120f3da47Updates info on tuner.editREADMEinput/stats/standard_stats.ininput/stats/host_budgets_stats.ininput/stats/all_stats.insrc/CLUBB_core/mono_flux_limiter.F90input/stats/scalars_stats.insrc/CLUBB_core/stats_variables.F90src/CLUBB_core/stats_zm_module.F90142a49ce528ef591ea2be4584fcb3381cd9ac3761658265385000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing a bug in mono_flux_limiter.F90. (#1026) * Fixing a bug in mono_flux_limiter.F90. This code was outputting "xm" instead of "wpxp" in several places. This commit is BIT_CHANGING since it will affect the netcdf output for these variables, even though there is no real change to answers. * Renaming wpthlp_entermfl to wpthlp_enter_mfl which is more consistent with other variable names. This is BIT_CHANGING due to changing the name and description in the output netcdf files. * Renaming a few more instances of wpthlp_entermfl to wpthlp_enter_mfl. 2022-07-19 15:16:25 -0600142a49ce528ef591ea2be4584fcb3381cd9ac376Fixing a bug in mono_flux_limiter.F90. (#1026)editsrc/CLUBB_core/mono_flux_limiter.F90editinput/stats/scalars_stats.ineditinput/stats/all_stats.ineditsrc/CLUBB_core/stats_variables.F90editsrc/CLUBB_core/stats_zm_module.F90editinput/stats/host_budgets_stats.ineditinput/stats/standard_stats.insrc/CLUBB_core/pdf_closure_module.F902b4e2de1ef6109a28e1253a1dfc28db5af78b56b1658271937000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing a bug. 2022-07-19 18:05:37 -05002b4e2de1ef6109a28e1253a1dfc28db5af78b56bFixing a bug.editsrc/CLUBB_core/pdf_closure_module.F90README8c34badac3dd513ed2d812670ebf6177845da2de1658325916000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate README Removing line to trigger nightly tests. 2022-07-20 08:05:16 -06008c34badac3dd513ed2d812670ebf6177845da2deUpdate READMEeditREADMEutilities/sens_matrix/sens_matrix_dashboard.pyc5fed924015576f1e6e193935684db34dbd82cfc1658346539000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduAdds to tuner dashboard a plot of predicted and actual removal of regional biases. The plot displays an arrow for each regional bias that points from the default-run bias to the bias that remains after tuning. For #910. 2022-07-20 14:48:59 -0500c5fed924015576f1e6e193935684db34dbd82cfcAdds to tuner dashboard a plot of predicted and actual removal of regional biases.editutilities/sens_matrix/sens_matrix_dashboard.pyREADME22bf0c7a92e959833c4eeaa4ad6f44fe4bf3b0bd1658419227000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdding line to trigger nightly tests. 2022-07-21 10:00:27 -060022bf0c7a92e959833c4eeaa4ad6f44fe4bf3b0bdAdding line to trigger nightly tests.editREADMEREADME275bd8179799446a93cb6e3d635b5660eb241ca41658760797000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoving line to trigger nightly tests. 2022-07-25 08:53:17 -0600275bd8179799446a93cb6e3d635b5660eb241ca4Removing line to trigger nightly tests.editREADMEREADME06d27bec48ed67856149fb173e84d81216ff7b251658874376000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdding line to trigger nightly tests. 2022-07-26 16:26:16 -060006d27bec48ed67856149fb173e84d81216ff7b25Adding line to trigger nightly tests.editREADMEutilities/sens_matrix/sens_matrix_dashboard.pye7717248290c00dc8b811075d85485f395d18a431659023878000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduUpdates tuner with new simulations from Zhun. For #910. 2022-07-28 10:57:58 -0500e7717248290c00dc8b811075d85485f395d18a43Updates tuner with new simulations from Zhun.editutilities/sens_matrix/sens_matrix_dashboard.pyinput/stats/all_stats.inbac96d230f35bffa2203634a987282f05b21ca7d1659387491000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI discovered a bug when trying to run with all_stats today. Apparently, at some point in the past, the stat variable Richardson_num had been entered twice. I am removing one of those instances so the code runs agaim. 2022-08-01 15:58:11 -0500bac96d230f35bffa2203634a987282f05b21ca7dI discovered a bug when trying to run with all_stats today. Apparently,editinput/stats/all_stats.insrc/CLUBB_core/advance_clubb_core_module.F90src/clubb_driver.F90src/CLUBB_core/pdf_closure_module.F90src/G_unit_test_types/w_up_in_cloud_tests.F90src/CLUBB_core/clubb_api_module.F909f7dce75d6c8651f509d04c686fe37fbcd6cb04d1660590191000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the w_up_in_cloud code in 2 ways: 1) The denominator term is now the "cloudy updraft" frac in each PDF component, rather than just the PDF component cloud_frac. This is more consistent with the quantity being integrated. 2) I also added a w_down_in_cloud for cloudy downdraft velocity. Since these fields are not output as part of standard stats, this commit will be bit-for-bit for the normal CLUBB output files. 2022-08-15 14:03:11 -05009f7dce75d6c8651f509d04c686fe37fbcd6cb04dI changed the w_up_in_cloud code in 2 ways:editsrc/CLUBB_core/pdf_closure_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/G_unit_test_types/w_up_in_cloud_tests.F90editsrc/CLUBB_core/clubb_api_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/stats_zt_module.F90src/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/stats_variables.F90src/CLUBB_core/stats_clubb_utilities.F90input/stats/all_stats.in6df666ce291b75e567f6a519a7f88d2a20cb607c1660594604000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added stats output for w_down_in_cloud to all_stats.in. Since this stat was not added to standard_stats.in, official results will still be bit-for-bit. 2022-08-15 15:16:44 -05006df666ce291b75e567f6a519a7f88d2a20cb607cI added stats output for w_down_in_cloud to all_stats.in.editsrc/CLUBB_core/stats_variables.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/stats_zt_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editinput/stats/all_stats.inpostprocessing/pyplotgen/config/VariableGroupWs.py908a6ae50aa6e91e5676215ee66e2b23525914fb1660665895000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added w_down_in_cloud to the "Ws" variable group in pyplotgen. 2022-08-16 11:04:55 -0500908a6ae50aa6e91e5676215ee66e2b23525914fbI added w_down_in_cloud to the "Ws" variable group in pyplotgen.editpostprocessing/pyplotgen/config/VariableGroupWs.pysrc/CLUBB_core/pdf_closure_module.F9006545f85e83d001306c27cc1bad3c4d0bc40c9c41660699106000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the w_up_in_cloud and w_down_in_cloud code so that a thresholding is used similar to what is seen in the cloud fraction and cloud water code. If the PDF component mean of w more than the maximum allow number of standard deviations away from 0, the PDF component is either all-updrafty or all-downdrafty, and the code avoids expensive computations where large magnitude values can potentially be fed into ERF or EXP. Of course, the results are not bit-for-bit with the previous version, meaning that there are some situations where these thresholds come into effect. However, plots of all cases show no visible differences in w_up_in_cloud and w_down_in_cloud. Since w_up_in_cloud and w_down_in_cloud are not included in normal stats output, this commit does not change the bit-for-bitness of CLUBB code. 2022-08-16 20:18:26 -050006545f85e83d001306c27cc1bad3c4d0bc40c9c4I altered the w_up_in_cloud and w_down_in_cloud code so that aeditsrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/pdf_closure_module.F908ce3e98cd6260bddeae905311e9fa64c832dbf001660756368000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have optimized the new w_up_in_cloud and w_down_in_cloud code by only doing repeated operations one time and then saving them as a local variable. Since the numerical order of operations changes for the argument to the EXP term, the results will differ at the level of numerical round-off, making this revision not bit-for-bit with the last revision. This only affects the w_up_in_cloud and w_down_in_cloud statistical output variables, which in turn are not output as part of standard_stats.in. 2022-08-17 12:12:48 -05008ce3e98cd6260bddeae905311e9fa64c832dbf00I have optimized the new w_up_in_cloud and w_down_in_cloud code byeditsrc/CLUBB_core/pdf_closure_module.F90postprocessing/pyplotgen/python_html_gallery/README.mdf331fbca5f4f0ee7ee1ce29fddb205c228cfaefd1661363971000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate README.md 2022-08-24 12:59:31 -0500f331fbca5f4f0ee7ee1ce29fddb205c228cfaefdUpdate README.mdeditpostprocessing/pyplotgen/python_html_gallery/README.mdpostprocessing/timestep_convergence_test.pyd4055d1e8cd0860a9cbfd71b707b1863eed3816b1661434651000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.eduupdating timestep_convergence_test.py to python 3 #693 2022-08-25 08:37:31 -0500d4055d1e8cd0860a9cbfd71b707b1863eed3816bupdating timestep_convergence_test.py to python 3 #693editpostprocessing/timestep_convergence_test.pysrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/clubb_api_module.F90src/Morrison_microphys/microphysics.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/advance_xp2_xpyp_module.F902fac6f76060d645f88d40a26211acc09382739ec1661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRefactored fill_holes_vertical to make GPUization simple. This is BIT_CHANGING, but results are bit-for-bit when using -O0 optimization, thus it is not answer changing. The first pass over each grid column will not parallelize well, the k-loop needs to be done in serial. Maximum parallelization has been exposed for the global hole-filling though, at the cost of occasionally doing unneccesary calculations. larson-group/clubb#972. 2022-08-30 12:45:31 -05002fac6f76060d645f88d40a26211acc09382739ecRefactored fill_holes_vertical to make GPUization simple. This is BIT_CHANGING, but results are bit-for-bit when using -O0 optimization, thus it is not answer changing. The first pass over each grid column will not parallelize well, the k-loop needs to be done in serial. Maximum parallelization has been exposed for the global hole-filling though, at the cost of occasionally doing unneccesary calculations. larson-group/clubb#972.editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/fill_holes.F90editsrc/Morrison_microphys/microphysics.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/constants_clubb.F90src/Morrison_microphys/microphysics.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/advance_xp2_xpyp_module.F909e2c466386f82b718051ff497638a4ba32df19e01661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving fill_holes_multiplicative and replacing magic numbers with parameters from constants_clubb. larson-group/clubb#972 2022-08-30 12:45:31 -05009e2c466386f82b718051ff497638a4ba32df19e0Removing fill_holes_multiplicative and replacing magic numbers with parameters from constants_clubb. larson-group/clubb#972editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/constants_clubb.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/Morrison_microphys/microphysics.F90src/CLUBB_core/advance_clubb_core_module.F90src/morrison_microphys_module.F90src/clubb_driver.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/fill_holes.F90src/SILHS/latin_hypercube_driver_module.F90src/CLUBB_core/advance_helper_module.F9025cc883ae8ea4673614609ce139be68d9a8dca651661881531000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMoving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972 2022-08-30 12:45:31 -050025cc883ae8ea4673614609ce139be68d9a8dca65Moving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/morrison_microphys_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/clubb_driver.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/advance_helper_module.F90microphysics.F9083787f1f2d89799ba7120f130165026984d5108c1661970509000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb change. 2022-08-31 13:28:29 -050083787f1f2d89799ba7120f130165026984d5108cMaking compatible with latest clubb change.editmicrophysics.F90src/Morrison_microphys/microphysics.F90ae80c8b20596dd8b19574c37a6892d824f13d2ec1662004902000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating src/Morrison_microphys 2022-08-31 23:01:42 -0500ae80c8b20596dd8b19574c37a6892d824f13d2ecRaw-copy updating src/Morrison_microphyseditsrc/Morrison_microphys/microphysics.F90run_scripts/run_bindiff_all.pyaa4978af7930fddb6b1b43dd960b4dd0304884ef1662061302000http://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikt@msoe.edurewrote run_bindiff_all.bash into python, and added extra functionality to view output of diff_netcdf_outputs.py script that is run inside of it. #980 2022-09-01 14:41:42 -0500aa4978af7930fddb6b1b43dd960b4dd0304884efrewrote run_bindiff_all.bash into python, and added extra functionality to view output of diff_netcdf_outputs.py script that is run inside of it. #980addrun_scripts/run_bindiff_all.pysrc/CLUBB_core/pdf_closure_module.F90src/ice_dfsn_module.F90src/CLUBB_core/saturation.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_clubb_core_module.F90src/microphys_driver.F90src/morrison_microphys_module.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/KK_microphys/KK_utilities.F90src/CLUBB_core/advance_helper_module.F90src/bugsrad_driver.F90src/CLUBB_core/T_in_K_module.F90src/coamps_microphys_driver_module.F90150cfa368eab46b06e835fe1b26c327e39277e051662512657000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving elementalness from sat_vapor_press_liq and making interal procedures subroutines rather than functions to prevent unneccesary data copies. Doing the same for thlm2T_in_K since it is often used in conjunction with sat_vapor_press_liq. Bit-for-bit confirmed with O0 using all single column cases with or without l_diag_Lscale_from_tau, and with cam_coarse_res. larson-group/clubb#972 2022-09-06 20:04:17 -0500150cfa368eab46b06e835fe1b26c327e39277e05Removing elementalness from sat_vapor_press_liq and making interal procedures subroutines rather than functions to prevent unneccesary data copies. Doing the same for thlm2T_in_K since it is often used in conjunction with sat_vapor_press_liq. Bit-for-bit confirmed with O0 using all single column cases with or without l_diag_Lscale_from_tau, and with cam_coarse_res. larson-group/clubb#972editsrc/KK_microphys/KK_utilities.F90editsrc/bugsrad_driver.F90editsrc/morrison_microphys_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/ice_dfsn_module.F90editsrc/microphys_driver.F90editsrc/coamps_microphys_driver_module.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/T_in_K_module.F90editsrc/CLUBB_core/saturation.F90src/CLUBB_core/T_in_K_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/saturation.F90a897c503a1aedf6c27144cbae6c711e82bf5cf0d1662512657000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding comments. 2022-09-06 20:04:17 -0500a897c503a1aedf6c27144cbae6c711e82bf5cf0dAdding comments.editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/T_in_K_module.F90editsrc/CLUBB_core/saturation.F90editsrc/CLUBB_core/clubb_api_module.F90src/CLUBB_core/pdf_closure_module.F90055f83d512354e6330233a5eecd5cff0456c02921662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding initial subroutine calc_ice_cloud_frac_component. 2022-09-09 11:32:21 -0500055f83d512354e6330233a5eecd5cff0456c0292Adding initial subroutine calc_ice_cloud_frac_component.editsrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/saturation.F90346bb61069516d7cecc78a45281f414e265b56041662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comCleaning up new subroutine calc_liquid_cloud_frac_component, and making sat_mixrat_ice a subroutine that works the same way as sat_mixrat_liq. larson-group/clubb#972 2022-09-09 11:32:21 -0500346bb61069516d7cecc78a45281f414e265b5604Cleaning up new subroutine calc_liquid_cloud_frac_component, and making sat_mixrat_ice a subroutine that works the same way as sat_mixrat_liq. larson-group/clubb#972editsrc/CLUBB_core/saturation.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/pdf_closure_module.F9007ffac20518c07d64698e6be4425d80392f57f7b1662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comComment update 2022-09-09 11:32:21 -050007ffac20518c07d64698e6be4425d80392f57f7bComment updateeditsrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/saturation.F90300b81903d722b56e1a6ccf07251269c14493b2b1662741141000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving these paratheses is BIT_CHANGING since it modifies the order of operations, but allows for the multiplication and subraction to be done in parallel for complex pipelines. 2022-09-09 11:32:21 -0500300b81903d722b56e1a6ccf07251269c14493b2bRemoving these paratheses is BIT_CHANGING since it modifies the order of operations, but allows for the multiplication and subraction to be done in parallel for complex pipelines.editsrc/CLUBB_core/saturation.F90README7b46672af546d7157ba7b469e5345d2562e1c1c81663004588000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding line to indicate BIT_CHANGING:055f83d512354e6330233a5eecd5cff0456c0292 to fix nightly tests. The commit which introduced calc_ice_cloud_frac_component was not BFB using -O2 optimization. See pull request https://github.com/larson-group/clubb/pull/1034 for detail. 2022-09-12 12:43:08 -05007b46672af546d7157ba7b469e5345d2562e1c1c8Adding line to indicate BIT_CHANGING:055f83d512354e6330233a5eecd5cff0456c0292 to fix nightly tests. The commit which introduced calc_ice_cloud_frac_component was not BFB using -O2 optimization. See pull request https://github.com/larson-group/clubb/pull/1034 for detail.editREADMEpostprocessing/pyplotgen/src/VariableGroup.pyc3ee79e89c69ce9d37d5d65f96f0eec01531c3841663359935000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding a kludgy but functional trimming for the (non-CLUBB) variables that are processed via the '_calc' key. These variables are not trimmed like the others since they are processed in a different place, and therefore the plots will not have the correct min/max height without this fix. This seems to matter for budget lines from non-CLUBB models (no CLUBB variables have the '_calc' key). 2022-09-16 15:25:35 -0500c3ee79e89c69ce9d37d5d65f96f0eec01531c384Adding a kludgy but functional trimming for the (non-CLUBB) variables that areeditpostprocessing/pyplotgen/src/VariableGroup.pyutilities/sens_matrix/sens_matrix_dashboard.py30ed028a5aa9df880f5d7e17d40622afb7329c8f1663951821000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduIn tuner, creates box and whiskers version of plot for optimal parameter values. 2022-09-23 18:50:21 +020030ed028a5aa9df880f5d7e17d40622afb7329c8fIn tuner, creates box and whiskers version of ploteditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/sens_matrix_dashboard.py0e54f9c1b694af30d06a8a8f6aaab249faa31a131664193825000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comAdds near-coastal regions to the tuner. Includes Nambian_near and VOCAL_near regions. 2022-09-26 14:03:45 +02000e54f9c1b694af30d06a8a8f6aaab249faa31a13Adds near-coastal regions to the tuner.editutilities/sens_matrix/sens_matrix_dashboard.pysrc/clubb_driver.F90b00b88f36d25ff0fc15c2e6c66e09b29f7e5fc071664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMaking multicolumn version of advance_clubb_core in clubb_driver that accepts a number of columns to run clubb with. All bit-for-bit output on standalone cases, so the first column is correct. 2022-10-05 11:47:10 -0500b00b88f36d25ff0fc15c2e6c66e09b29f7e5fc07Making multicolumn version of advance_clubb_core in clubb_driver that accepts a number of columns to run clubb with. All bit-for-bit output on standalone cases, so the first column is correct.editsrc/clubb_driver.F90input/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/output_netcdf.F90src/clubb_driver.F9052d5b77ea73abf368f0c947b448db59d05a7bf5b1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comImprovements. Netcdf output is now functional and we can detect errors with multiple columns even when the standard output is identical. 2022-10-05 11:47:10 -050052d5b77ea73abf368f0c947b448db59d05a7bf5bImprovements. Netcdf output is now functional and we can detect errors with multiple columns even when the standard output is identical.editinput/tunable_parameters/configurable_model_flags.ineditsrc/CLUBB_core/output_netcdf.F90editsrc/clubb_driver.F90src/clubb_driver.F908a6e980adc4fd5672287e789ee8f6248c8a585941664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comNow the multicolumn netcdf output is correct. Adding comments too. larson-group/clubb#1033 2022-10-05 11:47:10 -05008a6e980adc4fd5672287e789ee8f6248c8a58594Now the multicolumn netcdf output is correct. Adding comments too. larson-group/clubb#1033editsrc/clubb_driver.F90src/clubb_driver.F9083b151bdb131134d178f58521f468b9bb78b1e7e1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMade the multicolumn inout arrays save from timestep to timestep. This makes the extra columns more independent from the main column and allows differences in the extra columns to propagate more. larson-group/clubb#1033 2022-10-05 11:47:10 -050083b151bdb131134d178f58521f468b9bb78b1e7eMade the multicolumn inout arrays save from timestep to timestep. This makes the extra columns more independent from the main column and allows differences in the extra columns to propagate more. larson-group/clubb#1033editsrc/clubb_driver.F90src/clubb_driver.F90421981e323d84914a1fc2199030dc2d89b406d5c1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding some fields to tweak for extra columns. This might be sufficient, the netcdf data for the column is similar but visually different, and I tested with up to 64 columns and there wasn't any crashes. larson-group/clubb#1033 2022-10-05 11:47:10 -0500421981e323d84914a1fc2199030dc2d89b406d5cAdding some fields to tweak for extra columns. This might be sufficient, the netcdf data for the column is similar but visually different, and I tested with up to 64 columns and there wasn't any crashes. larson-group/clubb#1033editsrc/clubb_driver.F90run_scripts/check_multicol_error.pyfd99b2bd5ba78d01880afc1887accd713fb39a301664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding script to compare netcdf outputs. This will print the max absolute diff and max percent diff for each field. This is made specifically for the multicolumn netcdf output. The script is not done, but this is the basics of it. larson-group/clubb#1033 2022-10-05 11:47:10 -0500fd99b2bd5ba78d01880afc1887accd713fb39a30Adding script to compare netcdf outputs. This will print the max absolute diff and max percent diff for each field. This is made specifically for the multicolumn netcdf output. The script is not done, but this is the basics of it. larson-group/clubb#1033addrun_scripts/check_multicol_error.pysrc/clubb_driver.F90970c22416c2751064f1e25d4a16024e3f126de2e1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comCasting 0.0 to correct precision that format_date wants. 2022-10-05 11:47:10 -0500970c22416c2751064f1e25d4a16024e3f126de2eCasting 0.0 to correct precision that format_date wants.editsrc/clubb_driver.F90run_scripts/check_multicol_error.pyc25baf3b9171190aab0cba7f7c0564677871cd631664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comUpdating script to compare netcdf output. larson-group/clubb#1033 2022-10-05 11:47:10 -0500c25baf3b9171190aab0cba7f7c0564677871cd63Updating script to compare netcdf output. larson-group/clubb#1033editrun_scripts/check_multicol_error.pyinput/tunable_parameters/configurable_model_flags.inaf14d54b5dbe942882bfa6b67513b8f3781c5afc1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comUpdating column num input in config flags. larson-group/clubb#1033 2022-10-05 11:47:10 -0500af14d54b5dbe942882bfa6b67513b8f3781c5afcUpdating column num input in config flags. larson-group/clubb#1033editinput/tunable_parameters/configurable_model_flags.insrc/clubb_driver.F90f2cfc4fcd4059a5f5eb2f50efb478f49f22f24761664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding small check to allow configurable_multi_column_nl to be optional. If configurable_multi_column_nl is omitted from configurable_model_flags, then we assume we only want 1 column and a warning is printed. larson-group/clubb#1033 2022-10-05 11:47:10 -0500f2cfc4fcd4059a5f5eb2f50efb478f49f22f2476Adding small check to allow configurable_multi_column_nl to be optional. If configurable_multi_column_nl is omitted from configurable_model_flags, then we assume we only want 1 column and a warning is printed. larson-group/clubb#1033editsrc/clubb_driver.F90run_scripts/check_multicol_error.pyf848105748fb5819000d1244724dd3d04f45f4111664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comSmall script update 2022-10-05 11:47:10 -0500f848105748fb5819000d1244724dd3d04f45f411Small script updateeditrun_scripts/check_multicol_error.pyrun_scripts/check_multicol_error.pye4980f9e4055a1191da42fa0dd175c77a5886d4d1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding comments to script. 2022-10-05 11:47:10 -0500e4980f9e4055a1191da42fa0dd175c77a5886d4dAdding comments to script.editrun_scripts/check_multicol_error.pyinput/tunable_parameters/configurable_model_flags.insrc/clubb_driver.F9072afa580969c647295ee087c7bf605c9bb6c01fe1664988430000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comAdding comments, setting to num_standalone_columns=1 by default, and preventing multicolumn output when l_stats=false. larson-group/clubb#1033 2022-10-05 11:47:10 -050072afa580969c647295ee087c7bf605c9bb6c01feAdding comments, setting to num_standalone_columns=1 by default, and preventing multicolumn output when l_stats=false. larson-group/clubb#1033editsrc/clubb_driver.F90editinput/tunable_parameters/configurable_model_flags.ininput/tunable_parameters/configurable_model_flags.in946dda9c077bd1889644cf8933d6469cffa517d11665074836000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduNamelists need to be closed with a '/', and omitting it will break many tests. 2022-10-06 11:47:16 -0500946dda9c077bd1889644cf8933d6469cffa517d1Namelists need to be closed with a '/', and omitting it will break many tests.editinput/tunable_parameters/configurable_model_flags.inrun_scripts/check_multicol_error.pyinput/tunable_parameters/configurable_model_flags.insrc/clubb_driver.F9073e61e51337b34e2a9c651fc61c7600a1bf6702e1665088226000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking save variables in the multicol code threadprivate, this fixes the openmp test. Also changing the way we name and save the multicol output, this allows the parallel run to run with multiple columns. I've reflected the changes in comments where relevant. larson-group/clubb#1033 2022-10-06 15:30:26 -050073e61e51337b34e2a9c651fc61c7600a1bf6702eMaking save variables in the multicol code threadprivate, this fixes the openmp test. Also changing the way we name and save the multicol output, this allows the parallel run to run with multiple columns. I've reflected the changes in comments where relevant. larson-group/clubb#1033editsrc/clubb_driver.F90editrun_scripts/check_multicol_error.pyeditinput/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/advance_xm_wpxp_module.F90ee00186816ceb16bee810c897fabe4deb660fcc31665426176000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdds commented-out line that prevents the monotonic flux limiter from acting on rtm. The comments are included to remind us of how to do this in case we choose to do so in the future. 2022-10-10 13:22:56 -0500ee00186816ceb16bee810c897fabe4deb660fcc3Adds commented-out line that prevents the monotonic fluxeditsrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/mono_flux_limiter.F901bf74dd6f173a645d7bd448ab6bc07028c8ffadd1665672953000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating monotonic flux limiter code to remove spikes. (#1038) Also putting a commented out code change in advance_xm_wpxp, in case shutting of the flux limiter entirely for rtm is preferred. See https://github.com/NCAR/amwg_dev/discussions/134 for discussion. This commit will be BIT_CHANGING although the differences are only obvious in sensitive cases like arm_97. 2022-10-13 08:55:53 -06001bf74dd6f173a645d7bd448ab6bc07028c8ffaddUpdating monotonic flux limiter code to remove spikes. (#1038)editsrc/CLUBB_core/mono_flux_limiter.F90src/G_unit_test_types/spurious_source_test.F90input/tunable_parameters_compatible_r8029/configurable_model_flags.insrc/clubb_tuner.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/clubb_driver.F90src/CLUBB_core/model_flags.F90src/CLUBB_core/clubb_api_module.F90input/tunable_parameters_Lscale/configurable_model_flags.ininput/tunable_parameters_e3sm/configurable_model_flags.insrc/CLUBB_core/mono_flux_limiter.F90src/G_unit_test_types/pdf_parameter_tests.F90input/tunable_parameters/configurable_model_flags.in5b79c73c681b98162df10f5500226f69407040161665761524000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCreating new flags to control monotonic flux limiter (#1039) * Creating new flags to control monotonic flux limiter and the IF statement fix for the spikes found in CAM. * Removing no-longer-necessary logical l_mono_flux_lim. * Adding requested changes from PR (intent statements and editing error statement). * Accidentally set flag to false. Changing to true. 2022-10-14 09:32:04 -06005b79c73c681b98162df10f5500226f6940704016Creating new flags to control monotonic flux limiter (#1039)editinput/tunable_parameters/configurable_model_flags.ineditinput/tunable_parameters_Lscale/configurable_model_flags.ineditinput/tunable_parameters_e3sm/configurable_model_flags.ineditsrc/clubb_tuner.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/model_flags.F90editsrc/CLUBB_core/clubb_api_module.F90editinput/tunable_parameters_compatible_r8029/configurable_model_flags.ineditsrc/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/advance_clubb_core_module.F90src/clubb_driver.F90src/CLUBB_core/pdf_closure_module.F90src/G_unit_test_types/w_up_in_cloud_tests.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/stats_zt_module.F90src/CLUBB_core/stats_variables.F907550b3e11a7b6218c5eedc78f78e6397423141bb1665787786000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding cloudy_updraft_frac and cloudy_downdraft_frac as outputs to the calculate_w_up_in_cloud code. These fields are non-interactive for the standard set of cases. Thus, all cases are bit-for-bit identical. However, for the w_up_in_cloud and w_down_in_cloud results themselves, it is possible that results might not be bit-for-bit since the location of the max(eps, ...) clipping in the denominator is changed. However, results should not be appreciable different. 2022-10-14 17:49:46 -05007550b3e11a7b6218c5eedc78f78e6397423141bbI am adding cloudy_updraft_frac and cloudy_downdraft_frac aseditsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/stats_variables.F90editsrc/G_unit_test_types/w_up_in_cloud_tests.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/stats_zt_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/clubb_api_module.F90input/stats/all_stats.indd43df7acdaec448a6db87daff8537523060d6461665789118000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot to add cld_updr_frac and cld_downdr_frac to all_stats.in in the last commit. 2022-10-14 18:11:58 -0500dd43df7acdaec448a6db87daff8537523060d646I forgot to add cld_updr_frac and cld_downdr_frac to all_stats.ineditinput/stats/all_stats.ingithttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/cerniktcernikthttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwmhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse56http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/56/54http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/54/