Started by user ha:////4OTqwwJARYipgxaTMU/628BXzc5WnwwMWav+EMSsT6nJAAAAmR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAzuEgZe/dLi1CL9gqSi/NScYgCdW885wgAAAA==Peter Roels Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/branch_clubb_test@script/80ea14d615ebc9395974261fba8564223f2b0e87a3e7028a8db3b0f18d923dad to read jenkins_tests/clubb_gfortran_build/Jenkinsfile The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/branch_clubb_test@script/80ea14d615ebc9395974261fba8564223f2b0e87a3e7028a8db3b0f18d923dad # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 50a3080a1374291f321eae16b2806e0753e09b27 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 50a3080a1374291f321eae16b2806e0753e09b27 # timeout=10 Commit message: "Making nu_vert_res_dep a type containing arrays, as opposed to being an array of types." > git rev-list --no-walk 1cda981a58d39a171f155a4987cec616db96d36b # timeout=10 ha:////4I4gvr7nuLCyZc7iHPgjWyDjwima2Dfuve4pSq+aa/jjAAAAoh+LCAAAAAAAAP9tjTEOwjAQBM8BClpKHuFItIiK1krDC0x8GCfWnbEdkooX8TX+gCESFVvtrLSa5wtWKcKBo5UdUu8otU4GP9jS5Mixv3geZcdn2TIl9igbHBs2eJyx4YwwR1SwULBGaj0nRzbDRnX6rmuvydanHMu2V1A5c4MHCFXMWcf8hSnC9jqYxPTz/BXAFEIGsfuclm8zQVqFvQAAAA==[Pipeline] Start of Pipeline ha:////4I0gKCMp6dFQ8heHxAil9D+Jw3tsu4qw18pQrtWYQdTRAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycohUghExsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jduZBmjwAAAAA==[Pipeline] node Running on ha:////4L8X9hPn7zk7LeV8mEJ30US8b+Hkyh5vA+HgWKLp5VBZAAAAoR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz2EgZR/eT83ILSktQifY2k0sycEt3MPE19AHHxbH3KAAAAJenkins in /home/jenkins/workspace/branch_clubb_test ha:////4MnJELA9rrrUzSRSS3YU/yJTXkzSrZX/NRz3UHvEvOoaAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gA0xsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jfoP95RwAAAAA==[Pipeline] { ha:////4Cyh64RUOEsYz6XxXO6ire1gz/mNiyIzMjUannQv7e4PAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gQkxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jc09154wAAAAA==[Pipeline] stage ha:////4FZe6M3PeXQuzqSn57XEEIuZHliV+Mnwn7Wvfk67SOoqAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0ggUxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jek7ggRwAAAAA==[Pipeline] { (Declarative: Checkout SCM) ha:////4D92nCE/If1wVgh9o9cjl8Eef8hO6IrIw3R9jzZAitIcAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbaWGsbAmNJ0AWEZb8zwLrbuWJvJp3kLiJlZNMMm+a93rDOic4UbLcG+wdZu14DKOti0+U+lugiXu6ck2YKRguzSSpM+cFJRUDS1gDKwEbgzpQdmgLbIVXD9UGhba9lFS/o4DGdQM8gYlqLiqVL8wJdvexy4Q/z18BzLEA29ce4gfg7KmOvAAAAA==[Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/branch_clubb_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 50a3080a1374291f321eae16b2806e0753e09b27 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 50a3080a1374291f321eae16b2806e0753e09b27 # timeout=10 Commit message: "Making nu_vert_res_dep a type containing arrays, as opposed to being an array of types." ha:////4Hdr08r0QBBNc13gSnpRVdUC2vsWpBYW0/du3E4aH4x/AAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbGRNjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9Dg2gqvAAAAA==[Pipeline] } ha:////4D3JL6pX1M1/1q4Cb3emf6raOPn/7s/ZkFo29uGX8+4nAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQRbWRhjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9J+wGOvAAAAA==[Pipeline] // stage ha:////4DrvSwhiNTQbWuHkDmWP+Jxdw0IB9gojhcnQzDDjqob+AAAAph+LCAAAAAAAAP9tjTEOwjAQBM9BKWgpeYQDEh2iorXc8AITG+PEugv2haTiRXyNPxCIRMVWOyut5vmCMic4UPKycdgGzHWQXez91ORAqb1EGmRDZ1kTZopOajdosu44oyZ2MEcUsFCwdFhHygE9w0o15m6qaNBXJ07TtldQBHuDBwg1mdkk/sKYYH3tbSb8ef4KYOwYxI6h2G4+x/INtuQqUcEAAAA=[Pipeline] withEnv ha:////4A1geliNffHoNvWUGjXsqtlHkCGDCSHe+zEFO3TNCAarAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+DOrAycoiUzoiJNerCCUITQtLo/zZJSSdOxNW4Ay2VmPBg2Zas93pDGQOcKBjuNHYWY2t570czJ54pdDdPmTu68pYwkte80bkhpc9rbShpWFUw2AjYamw9RYsmwU44+ZCVl2iqSwrzdhTArBrgCYWYyUmG9C1TgP19VJHwx/kLgKlPwOrDYvXyLD8BobDcwgAAAA==[Pipeline] { ha:////4H6rZKvL75ThNwaUFkOY+Hxqp5o0QhwrcuoUaSessQdPAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUZUVMrFEWThCaEJJG/7dJSjpxIq7GHWipxIQHy7ZkvdcbqhjgRMEwp7GzGFvLej+aObFMobt5yszRlbWEkbxmQmdBSp/XKihpWFWUsOGw1dh6ihZNgh138iFrL9HUlxTm7cihtGqAJxR8JicZ0rdMAfb3UUXCH+cvAKY+Qdk0ix2WZ/UBbwyqm8IAAAA=[Pipeline] stage ha:////4PWkEu4yPR/Pkpstdaczn4TkOuBNQfKiHmXO1Ru1oTaMAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUwIiYukZZOEFoQkgb/V9+UtqJE3E17kBLJSY8WLYl673eUESGE7ETjcXWY6y96ELvpiQG4vYaaBANXURNGClYoeygyNhqqYqShUVZDisJa4t1oOjRJdjIRj90GTS68px42o4Scm/u8IRMTuSkOX3LyLC99SYS/jh/ATB2CfLdfrbD/Cw+y7kUycIAAAA=[Pipeline] { (Compile) ha:////4A2gHxLf7EggO4hGeTH0KfVPg7UWrHMNtzlvguMO1K77AAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiBB2iSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwZyu3uU/vwBgq0rvS+AAAA[Pipeline] sh + compile/compile.bash -c config/linux_x86_64_gfortran.bash ......................................................................................................................................................................... Make.clubb_lapack is ready. ............................................................................... Make.clubb_param is ready. ......................... Make.clubb_bugsrad is ready. ... Make.microphys_utils is ready. ..... Make.clubb_parabolic is ready. .............. Make.clubb_KK_microphys is ready. ................................................. Make.clubb_coamps is ready. ... Make.clubb_morrison is ready. ... Make.clubb_gfdlact is ready. ............. Make.silhs is ready. .................................................................. Make.clubb_other is ready. ... Make.clubb_standalone is ready. ... Make.clubb_thread_test is ready. ............ Make.clubb_tuner is ready. ... Make.jacobian is ready. ................ Make.G_unit_tests is ready. ... Make.int2txt is ready. cd /home/jenkins/workspace/branch_clubb_test/compile/../obj; make -f Make.clubb_param cd /home/jenkins/workspace/branch_clubb_test/compile/../obj; make -f Make.clubb_gfdlact make[1]: Entering directory '/home/jenkins/workspace/branch_clubb_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -c /home/jenkins/workspace/branch_clubb_test/compile/../src/SCM_Activation/aer_ccn_act_k.F90 make[1]: Entering directory '/home/jenkins/workspace/branch_clubb_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/clubb_precision.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/error_code.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/model_flags.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameter_indices.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_names.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_model.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/array_index.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stat_file_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/endian.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/lapack_interfaces.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/code_timer_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/mt95.f90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/constants_clubb.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_type.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/calendar.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_hybrid_pdf.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/pdf_parameter_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/pdf_utilities.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/matrix_operations.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/index_mapping.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] ar rv /home/jenkins/workspace/branch_clubb_test/compile/../lib/libclubb_gfdlact.a aer_ccn_act_k.o ar: creating /home/jenkins/workspace/branch_clubb_test/compile/../lib/libclubb_gfdlact.a a - aer_ccn_act_k.o make[1]: Leaving directory '/home/jenkins/workspace/branch_clubb_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/lapack_wrap.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/calc_roots.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90:545:19: 545 | integer :: k, i ! loop variable | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90:2558:32: 2558 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_tsdadg_pdf.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_pdf.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/LY93_pdf.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/T_in_K_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/saturation.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/diagnose_correlations_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/hydromet_pdf_parameter_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/clip_semi_implicit.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/sigma_sqd_w_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/Nc_Ncn_eqns.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/file_functions.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/interpolation.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_variables.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_type_utilities.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c -I/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_grads.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_reader.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90:1432:16: 1432 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90:1272:16: 1272 | integer :: i | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/precipitation_fraction.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_sfc_module.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_netcdf.F90 f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_netcdf.F90:42:9: 42 | use netcdf, only: & | 1 Fatal Error: Cannot open module file ‘netcdf.mod’ for reading at (1): No such file or directory compilation terminated. make[1]: *** [Make.clubb_param:112: output_netcdf.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make[1]: Leaving directory '/home/jenkins/workspace/branch_clubb_test/obj' make: *** [Makefile:14: libclubb_param.a] Error 2 ha:////4G1AZT2w5HeS7GbCLy4iReWU6rtA4CiaRuUl/9v2sSXfAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIihKgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N7BnLt++AAAA[Pipeline] } ha:////4PRdG1qzreBSC23lC58d/XXRpm6N9mgLWUsg+AO51mf+AAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiKGgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N4glvS6+AAAA[Pipeline] // stage ha:////4JrxbwUXNF5gP6R9XMWFpdVXR7KglH5FrYrP/JN1KIsTAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUnRgQE2uUhROEJoSk0f9tkpJOnIircQdaKjHhwbItWe/1hioGOFEwzGnsLMbWst6PZk4sU+hunjJzdGUtYSSvmdBZkNLntQpKGlYVJWw4bDW2nqJFk2DHnXzI2ks09SWFeTtyKK0a4AkFn8lJhvQtU4D9fVSR8Mf5C4CpT1A2zWKH5Vl9ANydZ8vCAAAA[Pipeline] stage ha:////4FjX6LPfPcP4rLd0Q+YiXlHQFPIyIbvLbANsx5pVByrKAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUTCAhpq5RFk4QmhDSRv+Xn5R24kRcjTvQUokJD5ZtyXqvNxSR4UTsRGOx9RhrL7rQuymJgbi9BhpEQxdRE0YKVig7KDK2WqqiZGFRlsNKwtpiHSh6dAk2stEPXQaNrjwnnrajhNybOzwhkxM5aU7fMjJsb72JhD/OXwCMXYJ8t5/tMD+LD0rlhNLCAAAA[Pipeline] { (Run) Stage "Run" skipped due to earlier failure(s) ha:////4DhSrFQyj+F65U58/gaiM0sS6AWXeMcOG4MsleVBaIGOAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiOhCiSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwhQ7ndf2r3BkN+Pj++AAAA[Pipeline] } ha:////4NMXrB/qYFDHPHI7EaAQwwLd5MEJ7/idH/hkVodm+AgEAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICNBQoFa3lhheYxBgn1l2wHZyKF/E1/oBFJCq2WO1sM683LIOHmr3BTlNvKTQWBzeavDCx76+OE3Z8wYYpsNModZLc6tOMkqOGOUUJCwErTY3jYMlEWItOPVTlFJnqHH3+jgJK297hCYXI5qh8/MLkYXMb28D08/wVwDQMEcr9Ntfu8AGHKGa5vgAAAA==[Pipeline] // stage ha:////4CxtaRN35fzvpMdXj7UihAY/3yqFBwDe5fr0taY4OgN3AAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUYUVMrFEWThCSENJG/5ckpZ04EVfjDgQqMeHBsi1Z7/mCJkU4UHSss9h7TNqzIYyuJDZR7C+BJtbRmWnCRMEyaSdJxh6XKilbWFTVsBKwtqgDJY8uw0Z06q7aoNC1pxzLthdQe3ODB1SikLOK+VvmCNvraBLhj/MXAPOQoea82I5/ns0bXGTWLMIAAAA=[Pipeline] stage ha:////4NjwOjBLBAkfBNMbEzvyckhi89sye79eAS3FVkVEFYa1AAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+DOrAycohUdEVMrFEXThCaEJJG/7dJSjpxIq7GHWipxIQHy7ZkvdcbyhjgRMFwp7GzGFvLez+aOfFMobt5ytzRlbeEkbzmjc4NKX1ea0NJw6qCwUbAVmPrKVo0CXbCyYesvERTXVKYt6MAZtUATyjETE4ypG+ZAuzvo4qEP85fAEx9AlYfFquXZ/kBAsTc3cIAAAA=[Pipeline] { (Declarative: Post Actions) ha:////4J8VKcc+UDLIYt/pceZoEZjdg5AzM5qpPgOIVWUQDhS9AAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUKiNiYo2ycILQhJA0+r9NUtKJE3E17kBLJSY8WLYl673eUMUAJwqGOY2dxdha1vvRzIllCt3NU2aOrqwljOQ1EzoLUvq8VkFJw6qihA2HrcbWU7RoEuy4kw9Ze4mmvqQwb0cOpVUDPKHgMznJkL5lCrC/jyoS/jh/ATD1CcqmWeywPKsPpnFij8IAAAA=[Pipeline] script ha:////4EQ/PANzCi/fc1qOGBiulG+kqw8+2rKiM23Df7DgJj4IAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUAjbE1DXKwglCE0La6P/yk9JOnIircQdaKjHhwbItWe/1hiIynIidaCy2HmPtRRd6NyUxELfXQINo6CJqwkjBCmUHRcZWS1WULCzKclhJWFusA0WPLsFGNvqhy6DRlefE03aUkHtzhydkciInzelbRobtrTeR8Mf5C4CxS5Dv9rMd5mfxAd6e6VPCAAAA[Pipeline] { ha:////4NK4xs9UEuqai+tziBnGK1EUhVf0r4V0Y1PtHgcC8r8IAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiIagQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N027j1u+AAAA[Pipeline] } ha:////4O9uDlR7spXr/N+ZDTLS1VLgPulaZhRhmj9LpW+wuP19AAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIigUSDqNJabniBiY1xYt0Z2yGpeBFf4w8EIlGxxWpnm3m+YJkiHDlabA11jlLjMPjeTgsHjt3F84Atn7FhSuwNSjNI1qaeUXI2MKcoYSFgZajxnBzZDGvRqruqvCJbnXKcvoOA0ukbPKAQkzmrmL8wRthce52Yfp6/AhhDyFBu95/avQFAXH9DvgAAAA==[Pipeline] // script ha:////4LjoX6d//3ZaJKnX8NLyD0yQynS9HsEO0LrkBrhIz/swAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohU6sKAmFijLJwgNCEkjf5vk5R04kRcjTvQUokJD5ZtyXqvN1QxwImCYU5jZzG2lvV+NHNimUJ385SZoytrCSN5zYTOgpQ+r1VQ0rCqKGHDYaux9RQtmgQ77uRD1l6iqS8pzNuRQ2nVAE8o+ExOMqRvmQLs76OKhD/OXwBMfYKyaRY7LM/qA7Az8xTCAAAA[Pipeline] script ha:////4ONu6otX42c3XXCgt3/9z6TK7k5XQhm3xJa/Fno5auoPAAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUYgEJMXWNsnCC0ISQNvq//KS0EyfiatyBlkpMeLBsS9Z7vaGIDCdiJxqLrcdYe9GF3k1JDMTtNdAgGrqImjBSsELZQZGx1VIVJQuLshxWEtYW60DRo0uwkY1+6DJodOU58bQdJeTe3OEJmZzISXP6lpFhe+tNJPxx/gJg7BLku/1sh/lZfAAnLfKUwgAAAA==[Pipeline] { ha:////4HSdHzwEOVgKltDttS7tkxPvod/Y3yLG1SceD4nwuUthAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiUYEQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7Nx03+yW+AAAA[Pipeline] } ha:////4K0LY+W5LsLDqWW0mAoEhlg9puMsevTGtdUCVBQkA4kQAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKCoKBAqWgtN7zAJMY4se6C7eBUvIiv8QcsIlGxxWpnm3m9YRk81OwNdpp6S6GxOLjR5IWJfX91nLDjCzZMgZ1GqZPkVp9mlBw1zClKWAhYaWocB0smwlp06qEqp8hU5+jzdxRQ2vYOTyhENkfl4xcmD5vb2Aamn+evAKZhiFDut7l2hw/wcDw0vgAAAA==[Pipeline] // script ha:////4E+jTHCWVHiAl/uOV48m9bwVM5din3ZXrdqcbqNFt9VxAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMIRoURUaa00vMDEh3Fi3RnbIal4EV/jD1hEomKL1c4283rDOgY4cTCiRxosxc4K70aTl5g4DFfHk+j5IjqmyA5Fi1PLGpsFW04IS4oSVhI2SJ3jaMkk2MpePVTlFJnqnEL+jhJKq+/whEJmc1IhfWEOsLuNOjL9PH8FMHufoDzsc9X1B9pXCo++AAAA[Pipeline] } ha:////4G+Phhsveal/BNsSm3PC7PgovORiCln59fl1qwj4JN72AAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMIRoURUaa00vMDEh3Fi3RnbIal4EV/jD1hEomKL1c4283rDOgY4cTCiRxosxc4K70aTl5g4DFfHk+j5IjqmyA5Fi1PLGpsFW04IS4oSVhI2SJ3jaMkk2MpePVTlFJnqnEL+jhJKq+/whEJmc1IhfWEOsLuNOjL9PH8FMHufoDzUuer9B850l5C+AAAA[Pipeline] // stage ha:////4KlPC3liNduhBL6B4bfE3TnS0eC4htGsLx6FX0yEG9/5AAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMJRlBJR0VppeIGJjXFi3Tn2haTiRXyNP2ARiYotVjvbzOsN2xThRNGK3uDgMHVOBD/ZvMRMcbh5mkVPV9ERJvJGtGZuSZvzii2xgTVFCRsJO4Odp+TQMuxlrx6q8gptdeGYv6OE0ukRnlDIbGYV+QtLhMN90onw5/krgCUEhrJpctX1B6j05nC+AAAA[Pipeline] } ha:////4K8ZbedIPzCeodzcR5bhZczjzfK+UVbqH9sEYhMKSYbuAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICgg6lorXc8AKTGOPEugu2g1PxIr7GH7CIRMUWq51t5vWGZfBQszfYaeothcbi4EaTFyb2/dVxwo4v2DAFdhqlTpJbfZpRctQwpyhhIWClqXEcLJkIa9Gph6qcIlOdo8/fUUBp2zs8oRDZHJWPX5g8bG5jG5h+nr8CmIYhQrk/5NptP4b05Bq+AAAA[Pipeline] // withEnv ha:////4KEy6uLMwRhR2u2lyDInCH5alOZ33I4UVcm27xDr9YeZAAAAox+LCAAAAAAAAP9tjTESgjAQRT84FraWHiIUauVY2WZoPEGEGAOZXUwWofJEXs07yMiMlb/67zXv9cYyRRw5OtVYaj2lyqsu9G56auDYXgMPquGLqpgSB6tKO5Rc29OMJYvFvCzHQmNlqQqcPDnBWjfmYYpgyBVniZM7aOS+vuOJTE9lMVG+MEZsbn2dmH6dvwGMXSfIt3tBtvsA/gVtV70AAAA=[Pipeline] } ha:////4L9uvRXOoJOeCpnzeZZssO665sh/V/W0BcxTPZO2UfLUAAAAox+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6IMJC7GybVh8Qsq1Fpo3sP2IUx+kb/mP0gkcfJO95zlvN5Yp4gjR6daS52nVHvVh8HNT40cu2vgUbV8UTVT4mBVZceKG3tasGKxWJblWGlsLNWBkycn2OrWPEwRDLniLHF2B43cN3c8kem5LCbKF6aI3W1oEtOv8zeAqe8FebkXZOUHjeqpjr0AAAA=[Pipeline] // node ha:////4FCLusfrCNMKHr3ffpw+nl9URkg4n2t9/eWvefv4tBuSAAAApB+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMKRoKBAVLRWGl5gEmOcWHfBvpBUvIiv8QciIlGx1c4083pjmSKOHJ1qLLWeUuVVF3o3PTVwbK+BB9XwRVVMiYNVpR1Kru1pxpLFYl6WY6GxslQFTp6cYK0b8zBFMOSKs8TJHTRyX9/xRKanspgoXxgjNre+Tky/zt8Axq4T5Lu9INt+AKvzzsS9AAAA[Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE