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#342342false3426982FAILURE1740154484483http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/342/src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90src/CLUBB_core/grid_class.F90src/Benchmark_cases/atex.F90src/CLUBB_core/stats_rad_zt_module.F90src/extended_atmosphere_module.F90src/Benchmark_cases/wangara.F90src/Benchmark_cases/cloud_sed_module.F90src/gfdl_activation.F90src/CLUBB_core/sfc_varnce_module.F90src/CLUBB_core/sponge_layer_damping.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/Benchmark_cases/astex_a209.F90src/time_dependent_input.F90src/G_unit_test_types/w_up_in_cloud_tests.F90src/advance_microphys_module.F90src/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/diffusion.F90src/CLUBB_core/parameters_tunable.F90src/Morrison_microphys/microphysics.F90src/SILHS/latin_hypercube_driver_module.F90src/CLUBB_core/clip_explicit.F90src/Benchmark_cases/gabls2.F90src/Benchmark_cases/nov11.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/Benchmark_cases/bomex.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/stats_lh_zt_module.F90src/CLUBB_core/pos_definite_module.F90src/CLUBB_core/stats_rad_zm_module.F90src/KK_microphys_module.F90src/estimate_scm_microphys_module.F90src/ice_dfsn_module.F90src/lh_microphys_driver_module.F90src/Benchmark_cases/dycoms2_rf02.F90src/microphys_driver.F90src/silhs_category_variance_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/calc_pressure.F90src/CLUBB_core/mono_flux_limiter.F90src/Benchmark_cases/dycoms2_rf01.F90src/Benchmark_cases/mpace_b.F90src/CLUBB_core/advance_helper_module.F90src/microphys_interface.incsrc/CLUBB_core/stats_lh_sfc_module.F90src/hydrostatic_module.F90src/Benchmark_cases/rico.F90src/SILHS/silhs_api_module.F90src/mixed_moment_PDF_integrals.F90src/soil_vegetation.F90src/Benchmark_cases/mpace_a.F90src/CLUBB_core/precipitation_fraction.F90src/CLUBB_core/stats_zm_module.F90src/CLUBB_core/turbulent_adv_pdf.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/stats_sfc_module.F90src/simple_rad_module.F90src/clubb_driver.F90src/morrison_microphys_module.F90src/sounding.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/stats_zt_module.F90src/KK_microphys/KK_upscaled_turbulent_sed.F90src/Benchmark_cases/lba.F90src/KK_microphys/KK_upscaled_covariances.F90src/coamps_microphys_driver_module.F908bbf5db087f49e4d6a4a1aaef2b825b3716276f81727293378000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack. 2024-09-25 14:42:58 -05008bbf5db087f49e4d6a4a1aaef2b825b3716276f8Removing the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack.editsrc/CLUBB_core/stats_lh_sfc_module.F90editsrc/CLUBB_core/sponge_layer_damping.F90editsrc/KK_microphys/KK_upscaled_covariances.F90editsrc/CLUBB_core/fill_holes.F90editsrc/extended_atmosphere_module.F90editsrc/KK_microphys/KK_upscaled_turbulent_sed.F90editsrc/microphys_driver.F90editsrc/Morrison_microphys/microphysics.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/soil_vegetation.F90editsrc/advance_microphys_module.F90editsrc/Benchmark_cases/dycoms2_rf01.F90editsrc/CLUBB_core/stats_sfc_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/silhs_category_variance_module.F90editsrc/CLUBB_core/calc_pressure.F90editsrc/Benchmark_cases/mpace_a.F90editsrc/CLUBB_core/pos_definite_module.F90editsrc/CLUBB_core/precipitation_fraction.F90editsrc/ice_dfsn_module.F90editsrc/Benchmark_cases/wangara.F90editsrc/CLUBB_core/turbulent_adv_pdf.F90editsrc/CLUBB_core/stats_lh_zt_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_xp3_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/Benchmark_cases/gabls2.F90editsrc/Benchmark_cases/mpace_b.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/Benchmark_cases/cloud_sed_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/parameters_tunable.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/time_dependent_input.F90editsrc/Benchmark_cases/lba.F90editsrc/lh_microphys_driver_module.F90editsrc/sounding.F90editsrc/Benchmark_cases/atex.F90editsrc/CLUBB_core/stats_rad_zm_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/simple_rad_module.F90editsrc/clubb_driver.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/CLUBB_core/grid_class.F90editsrc/mixed_moment_PDF_integrals.F90editsrc/hydrostatic_module.F90editsrc/Benchmark_cases/astex_a209.F90editsrc/gfdl_activation.F90editsrc/G_unit_test_types/w_up_in_cloud_tests.F90editsrc/Benchmark_cases/nov11.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/sfc_varnce_module.F90editsrc/estimate_scm_microphys_module.F90editsrc/Benchmark_cases/dycoms2_rf02.F90editsrc/CLUBB_core/stats_zt_module.F90editsrc/KK_microphys_module.F90editsrc/SILHS/silhs_api_module.F90editsrc/Benchmark_cases/rico.F90editsrc/CLUBB_core/diffusion.F90editsrc/microphys_interface.inceditsrc/CLUBB_core/stats_rad_zt_module.F90editsrc/coamps_microphys_driver_module.F90editsrc/morrison_microphys_module.F90editsrc/Benchmark_cases/bomex.F90editsrc/CLUBB_core/stats_zm_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90208542b71b71cc582f0ad3b3f8abf6953cf14f941727377555000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove radf variable from CLUBB call For pull request #1183 and ticket #1152. 2024-09-26 14:05:55 -0500208542b71b71cc582f0ad3b3f8abf6953cf14f94Remove radf variable from CLUBB calleditsrc/clubb_driver.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90src/G_unit_test_types/smooth_heaviside_tests.F901632cf12730e5062a99c07d6718a0ceee5d48c0a1727381112000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduInitializing total_mismatches to zero. 2024-09-26 15:05:12 -05001632cf12730e5062a99c07d6718a0ceee5d48c0aInitializing total_mismatches to zero.editsrc/G_unit_test_types/smooth_heaviside_tests.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.py17f710e467c2f0d81037dcba0a0ea12b4c51d1a81727469012000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Print leverage values and make other minor refactorings. For #910. 2024-09-27 15:30:12 -050017f710e467c2f0d81037dcba0a0ea12b4c51d1a8QuadTune: Print leverage values and make other minor refactorings.editutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pysrc/CLUBB_core/new_hybrid_pdf_main.F90src/CLUBB_core/advance_clubb_core_module.F90input/stats/standard_stats.insrc/CLUBB_core/pdf_closure_module.F90input/stats/all_stats.insrc/CLUBB_core/stats_zt_module.F90src/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/new_pdf_main.F90input/stats/scalars_stats.insrc/CLUBB_core/stats_variables.F90fe6ddb2a0179dc3d9a983236a0cc7142eb82ac5f1727889130000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNew/new_hybrid PDF Stats Removal (#1185) * Removing stats output only used for new and new_hybrid pdfs. See https://github.com/larson-group/clubb/issues/1176 * Removing stats from namelists 2024-10-02 12:12:10 -0500fe6ddb2a0179dc3d9a983236a0cc7142eb82ac5fNew/new_hybrid PDF Stats Removal (#1185)editsrc/CLUBB_core/new_pdf_main.F90editsrc/CLUBB_core/new_hybrid_pdf_main.F90editsrc/CLUBB_core/stats_zt_module.F90editinput/stats/all_stats.ineditsrc/CLUBB_core/pdf_closure_module.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editinput/stats/scalars_stats.ineditsrc/CLUBB_core/stats_variables.F90editinput/stats/standard_stats.ineditsrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/tridiag_lu_solver.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/mean_adv.F90src/CLUBB_core/Skx_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/turbulent_adv_pdf.F90src/clubb_driver.F90src/advance_microphys_module.F90src/CLUBB_core/advance_helper_module.F90src/CLUBB_core/T_in_K_module.F90src/CLUBB_core/diffusion.F90src/CLUBB_core/penta_lu_solver.F909be92f7d1770866d14c86ede57d6e1e5ddbde6211727889537000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCopyout Nuke (#1182) * Resolving merge conflicts * Renaming tmp variables * More tmp name removals, slightly better copying logic. * Removing a couple more unneeded data statements * Adding needed copyouts around calls to GPU functions. * More copyout removals * Reverting possible bit-changing commit * Fixing bug * One more removal 2024-10-02 12:18:57 -05009be92f7d1770866d14c86ede57d6e1e5ddbde621Copyout Nuke (#1182)editsrc/CLUBB_core/tridiag_lu_solver.F90editsrc/CLUBB_core/penta_lu_solver.F90editsrc/CLUBB_core/mean_adv.F90editsrc/CLUBB_core/Skx_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/T_in_K_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/diffusion.F90editsrc/CLUBB_core/grid_class.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/turbulent_adv_pdf.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_helper_module.F90af5ff60b788f7264dca65b00a4875297082038c61727973450000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi zm calc cleanup (#1186) CLUBB ticket #1145 - Removed redundant smooth_max call on Ri_zm in diagnose_Lscale_from_tau - Renamed Ri_zm to Ri_zm_Cx in compute_Cx_fnc_Richardson to distinguish it from the Ri_zm used to caluculate invrs_tau_wpxp_zm 2024-10-03 11:37:30 -0500af5ff60b788f7264dca65b00a4875297082038c6Ri zm calc cleanup (#1186)editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/mono_flux_limiter.F90jenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfilerun_scripts/test_monoflux_limiter_GPU.py15cdcef9c5c6e097d91712a10ea2c5b89c5ea0e11727989859000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMonoflux test (#1188) * Adding comments in code * Adding test script * Updating test script * Adding jenkins file to run new test * Adding descriptions, cleanup, and name change to indiciate this is a GPU test. * Cleaup and adding references 2024-10-03 16:10:59 -050015cdcef9c5c6e097d91712a10ea2c5b89c5ea0e1Monoflux test (#1188)addrun_scripts/test_monoflux_limiter_GPU.pyeditsrc/CLUBB_core/mono_flux_limiter.F90addjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfilesrc/CLUBB_core/mono_flux_limiter.F90411597c76553f0baeb2bf38a8624c56adf4678da1727990108000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug. This loop has a vertical dependency prevent the use of collapse(2). See https://github.com/larson-group/cam/issues/175\#issuecomment-2261283301 2024-10-03 16:15:08 -0500411597c76553f0baeb2bf38a8624c56adf4678daFixing bug. This loop has a vertical dependency prevent the use of collapse(2). See https://github.com/larson-group/cam/issues/175\#issuecomment-2261283301editsrc/CLUBB_core/mono_flux_limiter.F90src/clubb_driver.F904bd334221a3e4774de1e962c1f0747dfe7150dc41728001690000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix 2024-10-03 19:28:10 -05004bd334221a3e4774de1e962c1f0747dfe7150dc4Small bug fixeditsrc/clubb_driver.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/parameters_tunable.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/advance_microphys_module.F90src/CLUBB_core/saturation.F90src/SILHS/silhs_api_module.F90src/CLUBB_core/fill_holes.F90src/Benchmark_cases/neutral_case.F90d423046c547ffa8af68ce4faa8d77a8476e4f8871728050904000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comrefactoring to remove compiler warnings (#1187) * refactor code to remove warnings for exceeding 100 characters per line * remove unused variables * remove unused parameters #1174 * fix for the GPU * remove new unused parameters * remove unused dummy arguments * make small changes to reduce compiler warnings * put solve_name back in as input variable to band_solve methods * combine intent in and out parameters from calc_trapezoid_zm and calc_trapezoid_zt to intent inout parameters * remove unused functions init_parameters_999 and sat_vapor_press_ice_* * remove unused dummy arguments * fix merge error * remove unnecessary loop 2024-10-04 09:08:24 -0500d423046c547ffa8af68ce4faa8d77a8476e4f887refactoring to remove compiler warnings (#1187)editsrc/CLUBB_core/saturation.F90editsrc/advance_microphys_module.F90editsrc/SILHS/silhs_api_module.F90editsrc/Benchmark_cases/neutral_case.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/parameters_tunable.F90utilities/sens_matrix/requirements.txt5cc5bc9697304ab6b15657d35ef5f0efd75316491728057222000http://carson.math.uwm.edu/jenkins/user/hasenau2hasenau2hasenau2@uwm.eduAdded requirements.txt for running the sens_matrix_dashboard. 2024-10-04 10:53:42 -05005cc5bc9697304ab6b15657d35ef5f0efd7531649Added requirements.txt for running the sens_matrix_dashboard.addutilities/sens_matrix/requirements.txtutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyf518cd9358682c1866292899417b975694c50fd31728064238000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Introduce new utility function to create scatterplots and plot first 2 SVD components. For #910. 2024-10-04 12:50:38 -0500f518cd9358682c1866292899417b975694c50fd3QuadTune: Introduce new utility function to create scatterplots and plot first 2 SVD components.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pysrc/CLUBB_core/grid_class.F90771412d05f18e8491fea0cc25314aeea896813cc1728074121000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am copying the round-off level changes made to grid weights and grid interpolation functions from the generalized_grid branch over to the master branch. This is being done ahead of merging code from the master over to the generalized_grid branch. This code is necessary to get results in the generalized grid branch bit-for-bit between ascending and descending grid directions when optimization is set to -O0. This change produces changes at the numerical round-off level in the affected calculations, making this commit BIT_CHANGING. Plots show lines overlap for almost all cases besides the most sensitive cases (ARM 97, TWP ICE, etc. -- looking at those shows you how much of a difference a simple numerical round-off can make). 2024-10-04 15:35:21 -0500771412d05f18e8491fea0cc25314aeea896813ccI am copying the round-off level changes made to grid weightseditsrc/CLUBB_core/grid_class.F90src/CLUBB_core/mono_flux_limiter.F90run_scripts/test_monoflux_limiter_GPU.py7ece9fa5eafbaa094fd23095d704a861c5c902bd1728328341000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMono Flux Optimizations (#1189) * Performance optimizations. This is BIT_CHANGING but not answer changing. * Small bug fix * Fix for uninitialized value in stats call and use of zero over 0.0_core_rknd * Adding new variables to CPU data statements. * Slight improvements to monoflux_test script. * Making monoflux test script test with multiple columns * Renaming and cleanup. 2024-10-07 14:12:21 -05007ece9fa5eafbaa094fd23095d704a861c5c902bdMono Flux Optimizations (#1189)editrun_scripts/test_monoflux_limiter_GPU.pyeditsrc/CLUBB_core/mono_flux_limiter.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.py89d63edacac2fdf78260a465851405d497fefab71728404163000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Create SVD plot, start to add checks on global means (unfinished), and start to add capability to include multiple fields (SWCF, LWCF, etc.) in metrics (unfinished). For #910. 2024-10-08 11:16:03 -050089d63edacac2fdf78260a465851405d497fefab7QuadTune: Create SVD plot, start to add checks on global means (unfinished), and start to add capability to include multiple fields (SWCF, LWCF, etc.) in metrics (unfinished).editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/clubb_api_module.F90src/clubb_driver.F9091a850ea46938fd79250eaada0aef3e4aa5ad30e1728415264000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comadd Lscale intent(out) to advance_clubb_core and advance_clubb_core_api (#1190) * add Lscale intent(out) to advance_clubb_core and advance_clubb_core_api * make Lscale one dimensional for call to advance_clubb_core_api_single_col * fix Lscale call in advance_clubb_core_api_single_col * ange Lscale usage in clubb_driver For larson-group/clubb#1166. 2024-10-08 14:21:04 -050091a850ea46938fd79250eaada0aef3e4aa5ad30eadd Lscale intent(out) to advance_clubb_core and advance_clubb_core_api (#1190)editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/clubb_api_module.F90run_scripts/run_bindiff_all.py47d9dbeb6e2b4e77c8cc0aa98e52f2b2697dd7001728420251000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBindiff script (#1191) Extended verbosity functionality for run_bindiff_all.py CLUBB ticket #1181 I added a level system for the verbosity option. Now 0 gives just the general summary at the end, 1 is default and gives the same output as the old default, 2 is the same as the old `--verbose` option 2024-10-08 15:44:11 -050047d9dbeb6e2b4e77c8cc0aa98e52f2b2697dd700Bindiff script (#1191)editrun_scripts/run_bindiff_all.pysrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/constants_clubb.F90src/CLUBB_core/advance_helper_module.F90src/CLUBB_core/mixing_length.F90fc730619ece3d60ae5fba256f6f93f4d9ec30fc41728580508000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded min_max_smth_mag as a Fortran parameter to constants_clubb.F90 (#1192) 2024-10-10 12:15:08 -0500fc730619ece3d60ae5fba256f6f93f4d9ec30fc4Added min_max_smth_mag as a Fortran parameter to constants_clubb.F90 (#1192)editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/constants_clubb.F90editsrc/CLUBB_core/advance_helper_module.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.py857656672d17cca5376c2bc7d488bdb666f0aa501728910825000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Allow QuadTune to simultaneously tune for multiple 20x20 fields, e.g., SWCF, LWCF, and PRECT. For #910. 2024-10-14 08:00:25 -0500857656672d17cca5376c2bc7d488bdb666f0aa50QuadTune: Allow QuadTune to simultaneously tune for multiple 20x20 fields, e.g., SWCF, LWCF, and PRECT.editutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pypostprocessing/pyplotgen/src/ContourPanel.pypostprocessing/pyplotgen/src/Panel.pypostprocessing/pyplotgen/src/AnimationPanel.pypostprocessing/pyplotgen/src/DataReader.pypostprocessing/pyplotgen/src/VariableGroup.py063ae17fdafd9d13795c90b7e5ab538ef736a04c1729032084000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded rcm-background to pyplotgen animations (#1195) * Fixed ContourPanel and added rcm background to AnimationPanel in pyplotgen CLUBB ticket #1164 * Fixed super call, adjusted super call in ContourPanel, and left a comment describing the issue with the 4 new arguments * Added rcm background to animations * Also, fixed small bug in DataReader. __getStartEndIndex__ 2024-10-15 17:41:24 -0500063ae17fdafd9d13795c90b7e5ab538ef736a04cAdded rcm-background to pyplotgen animations (#1195)editpostprocessing/pyplotgen/src/DataReader.pyeditpostprocessing/pyplotgen/src/Panel.pyeditpostprocessing/pyplotgen/src/VariableGroup.pyeditpostprocessing/pyplotgen/src/ContourPanel.pyeditpostprocessing/pyplotgen/src/AnimationPanel.pyinput/case_setups/cloud_feedback_s6_p2k_model.ininput/case_setups/cgils_s12_model.ininput/case_setups/mc3e_model.insrc/CLUBB_core/output_netcdf.F90input/case_setups/cgils_s6_model.ininput/case_setups/cobra_model.ininput/case_setups/arm_97_model.insrc/G_unit_test_types/pdf_parameter_tests.F90input/case_setups/lba_model.ininput/case_setups/atex_model.ininput/case_setups/gabls3_model.insrc/CLUBB_core/parameters_tunable.F90input/case_setups/nov11_altocu_model.ininput/case_setups/mpace_b_silhs_model.ininput/case_setups/dycoms2_rf02_nd_model.LR.ininput/case_setups/rico_silhs_model.insrc/SILHS/latin_hypercube_driver_module.F90input/case_setups/mpace_a_model.ininput/case_setups/cgils_s11_model.ininput/case_setups/cloud_feedback_s11_model.insrc/input_netcdf.F90input/case_setups/mpace_b_model.inrun_scripts/create_multi_col_params.pyinput/case_setups/dycoms2_rf02_so_model.LR.ininput/case_setups/dycoms2_rf02_do_model.HR.insrc/CLUBB_core/clubb_api_module.F90input/case_setups/dycoms2_rf02_ds_model.HR.ininput/tunable_parameters_Lscale/configurable_model_flags.ininput/case_setups/arm_0003_model.ininput/case_setups/dycoms2_rf02_so_model.ininput/tunable_parameters/configurable_model_flags.ininput/case_setups/astex_a209_model.ininput/case_setups/dycoms2_rf02_do_model.LR.ininput/case_setups/bomex_model.ininput/case_setups/dycoms2_rf02_so_model.HR.ininput/case_setups/dycoms2_rf01_model.ininput/case_setups/cloud_feedback_s12_model.ininput/case_setups/dycoms2_rf02_ds_model.ininput/case_setups/gabls2_model.ininput/case_setups/cgils_s6_p2k_model.ininput/case_setups/rico_model.ininput/case_setups/cloud_feedback_s6_model.ininput/case_setups/arm_model.ininput/case_setups/neutral_model.insrc/clubb_standalone.F90input/case_setups/twp_ice_model.inrun_scripts/check_multicol_error.pysrc/CLUBB_core/stats_clubb_utilities.F90input/case_setups/READMEinput/case_setups/clex9_nov02_model.ininput/grid/READMEinput/case_setups/jun25_altocu_model.insrc/G_unit_test_types/spurious_source_test.F90input/case_setups/fire_model.ininput/case_setups/arm_3year_model.insrc/SILHS/silhs_api_module.F90input/case_setups/cloud_feedback_s12_p2k_model.insrc/clubb_thread_test.F90input/case_setups/dycoms2_rf02_nd_model.HR.ininput/case_setups/cloud_feedback_s11_p2k_model.injenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileinput/case_setups/dycoms2_rf02_do_model.ininput/case_setups/dycoms2_rf02_morr_model.insrc/jacobian.F90src/clubb_driver.F90input/case_setups/dycoms2_rf02_nd_model.insrc/clubb_model_settings.F90src/sounding.F90READMErun_scripts/test_monoflux_limiter_GPU.pyinput/case_setups/cgils_s11_p2k_model.ininput/case_setups/dycoms2_rf02_ds_model.LR.ininput/case_setups/cgils_s12_p2k_model.insrc/error.F90run_scripts/check_multi_col_error.pyinput/case_setups/gabls3_night_model.ininput/case_setups/wangara_model.ininput/case_setups/clex9_oct14_model.ininput/case_setups/dycoms2_rf01_fixed_sst_model.inebbe8662d74aaeb06f853280849b84c54d47edc21729133670000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMulticol CLUBB (#1193) * Adding column loop to run_clubb * Lot more changes * Adding multicolumn output support and improving stats code. * Conditionally closing stats files. This is just a bug fix. I'm not sure how this ever worked without the conditionals. * Improvements and some cleanup. * Bug fix * Merge with master * Removing num_standalone_columns, it's no longer needed. * Changes to make CPU vs GPU test work with new multicol mode. Columns now run with different parameter sets, tolerance script checks average diff instead, increasing number of cobra timestep run, removing mpace_b because it turns out that cobra has ice and is capable of detecting the same ice code errors that mpace_b was added to test. * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Tightening tolerance * Script cleanup and improvement * Some more slight changes and cleanup. Making monoflux script work with new multicol mode. * Small bug fix that was breaking bugsrad when using multiple columns. * Bug fix to script * Small cleanup and renaming of read_parameters * Slight update to ifdef NETCDF statement * Better change to ifdefs * Adding new name init_read_clubb_params_api to public api list * Name changes and adding section in README * Renaming script * Renaming script * Removing C1 from list of variables to change, it was breaking the CPU vs GPU test, and also clubb warns that 'l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F', so perhaps chaning it is just unstable. I've confirmed that GPU bugs are still dectable though. 2024-10-16 21:54:30 -0500ebbe8662d74aaeb06f853280849b84c54d47edc2Multicol CLUBB (#1193)editinput/case_setups/arm_model.ineditinput/case_setups/dycoms2_rf02_so_model.HR.ineditinput/case_setups/cloud_feedback_s11_model.ineditinput/case_setups/atex_model.ineditinput/case_setups/dycoms2_rf02_do_model.ineditsrc/SILHS/latin_hypercube_driver_module.F90editinput/case_setups/cobra_model.ineditinput/case_setups/cgils_s11_model.indeleterun_scripts/check_multicol_error.pyeditsrc/clubb_model_settings.F90editsrc/clubb_driver.F90editinput/case_setups/dycoms2_rf01_model.ineditinput/case_setups/dycoms2_rf02_so_model.ineditinput/case_setups/jun25_altocu_model.ineditinput/case_setups/rico_silhs_model.ineditinput/case_setups/wangara_model.ineditinput/case_setups/clex9_oct14_model.ineditinput/case_setups/cloud_feedback_s12_p2k_model.inaddrun_scripts/create_multi_col_params.pyeditsrc/clubb_thread_test.F90editsrc/G_unit_test_types/spurious_source_test.F90editinput/case_setups/bomex_model.ineditinput/case_setups/dycoms2_rf02_ds_model.LR.ineditinput/case_setups/lba_model.ineditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileeditinput/case_setups/dycoms2_rf01_fixed_sst_model.ineditinput/case_setups/cgils_s6_model.ineditinput/case_setups/nov11_altocu_model.ineditsrc/clubb_standalone.F90editinput/case_setups/arm_0003_model.ineditinput/case_setups/twp_ice_model.ineditsrc/CLUBB_core/parameters_tunable.F90editinput/case_setups/arm_3year_model.ineditinput/case_setups/dycoms2_rf02_nd_model.HR.ineditinput/case_setups/dycoms2_rf02_nd_model.ineditinput/case_setups/gabls3_night_model.ineditinput/case_setups/arm_97_model.ineditinput/case_setups/clex9_nov02_model.ineditinput/case_setups/dycoms2_rf02_do_model.HR.ineditinput/case_setups/dycoms2_rf02_so_model.LR.ineditsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/output_netcdf.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editREADMEeditinput/case_setups/mc3e_model.ineditinput/case_setups/dycoms2_rf02_ds_model.ineditinput/case_setups/dycoms2_rf02_morr_model.ineditinput/case_setups/mpace_b_silhs_model.ineditinput/grid/READMEeditinput/case_setups/dycoms2_rf02_nd_model.LR.ineditrun_scripts/test_monoflux_limiter_GPU.pyeditsrc/input_netcdf.F90editinput/case_setups/dycoms2_rf02_do_model.LR.ineditsrc/sounding.F90editsrc/SILHS/silhs_api_module.F90editinput/case_setups/fire_model.ineditinput/case_setups/neutral_model.ineditinput/case_setups/gabls2_model.ineditsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/jacobian.F90editinput/case_setups/READMEeditinput/case_setups/cloud_feedback_s6_p2k_model.ineditinput/case_setups/mpace_a_model.ineditinput/case_setups/mpace_b_model.ineditinput/case_setups/cgils_s6_p2k_model.ineditsrc/error.F90editinput/tunable_parameters/configurable_model_flags.ineditinput/tunable_parameters_Lscale/configurable_model_flags.ineditinput/case_setups/cloud_feedback_s11_p2k_model.ineditinput/case_setups/dycoms2_rf02_ds_model.HR.ineditinput/case_setups/gabls3_model.ineditinput/case_setups/cloud_feedback_s6_model.ineditinput/case_setups/cloud_feedback_s12_model.ineditinput/case_setups/cgils_s12_model.ineditinput/case_setups/astex_a209_model.ineditinput/case_setups/cgils_s12_p2k_model.ineditinput/case_setups/rico_model.inaddrun_scripts/check_multi_col_error.pyeditinput/case_setups/cgils_s11_p2k_model.inutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.py3229e98fa9771ddc209046f4fdd0d227625f1a421729183500000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Revise PCA biplot and clarify how variables are masked. For #910. 2024-10-17 11:45:00 -05003229e98fa9771ddc209046f4fdd0d227625f1a42QuadTune: Revise PCA biplot and clarify how variables are masked.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyrun_scripts/READMErun_scripts/run_bindiff_w_flags.py.gitignorerun_scripts/run_scm.bashrun_scripts/run_bindiff_w_flags_config_example.jsona6aa9ae31e872d9df8b7770516f69422936c38bd1729197384000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comadd run_bindiff_w_flags.py script. #1181 pull request #1194 * create script to test bindiff for many different flag settings and add some flags to the run_scm.bash script * add script to compile from github and add changes to bindiff script * add final changes to run_scm_w_bindiff.py script and add example flag config file * rewrite script and add documentation to readme * remove unused script and add doc to run_bindiff_w_flags.py script * add documentation to script and refactor to stay under 100 characters per line 2024-10-17 15:36:24 -0500a6aa9ae31e872d9df8b7770516f69422936c38bdadd run_bindiff_w_flags.py script. #1181 pull request #1194addrun_scripts/run_bindiff_w_flags.pyedit.gitignoreeditrun_scripts/run_scm.bashaddrun_scripts/run_bindiff_w_flags_config_example.jsoneditrun_scripts/READMEpostprocessing/pyplotgen/src/ContourPanel.pypostprocessing/pyplotgen/src/Contour.pypostprocessing/pyplotgen/config/VariableGroupCorrelationsTimeHeight.pypostprocessing/pyplotgen/config/Style_definitions.pyc6a3895bf0db72da4f7acb46f4637d73d20d7df51729285755000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix time height plots (#1196) Final wrap up of pyplotgen changes CLUBB ticket #1164 Added new VariableGroup that plots CLUBB correlations as as time-height plots Changed colormap for time-height plots and fixed coloring scheme for time-height plots 2024-10-18 16:09:15 -0500c6a3895bf0db72da4f7acb46f4637d73d20d7df5Fix time height plots (#1196)addpostprocessing/pyplotgen/config/VariableGroupCorrelationsTimeHeight.pyeditpostprocessing/pyplotgen/src/ContourPanel.pyeditpostprocessing/pyplotgen/src/Contour.pyeditpostprocessing/pyplotgen/config/Style_definitions.pyutilities/sens_matrix/create_figs.py25435a8b0094e51db95a383d42a93db86c643f761729296252000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text. For #910. 2024-10-18 19:04:12 -050025435a8b0094e51db95a383d42a93db86c643f76QuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text.editutilities/sens_matrix/create_figs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyf8d7cc45d96ec81f05f09d0aff8dad2b5ae334351729296318000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text. For #910. 2024-10-18 19:05:18 -0500f8d7cc45d96ec81f05f09d0aff8dad2b5ae33435QuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py7726602feef7f94a81bfa01ac55336701d5d2dfc1729344467000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Use SVD to approximate the sensitivity matrix, `normlzdSensMatrixPoly`, and curvature matrix, `normlzdCurvMatrix`. For #910. 2024-10-19 08:27:47 -05007726602feef7f94a81bfa01ac55336701d5d2dfcQuadTune: Use SVD to approximate the sensitivity matrix, `normlzdSensMatrixPoly`, and curvature matrix, `normlzdCurvMatrix`.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pysrc/clubb_driver.F90src/input_fields.F9091fc9735c426ef0fce29ebab86c6d1c7e4638b901729543207000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comremove Lscale, Lscale_up and Lscale_down from stat_fields_reader and restart_clubb call and remove recalculation of Lscale Ticket #1166 (#1197) * remove Lscale, Lscale_up, Lscale_down from stat_fields_reader * remove Lscale recalculation #1166 BIT_CHANGING only for cases that use silhs 2024-10-21 15:40:07 -050091fc9735c426ef0fce29ebab86c6d1c7e4638b90remove Lscale, Lscale_up and Lscale_down from stat_fields_reader and restart_clubb call and remove recalculation of Lscale Ticket #1166 (#1197)editsrc/clubb_driver.F90editsrc/input_fields.F90jenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfilerun_scripts/run_bindiff_all.py4cc54e585f1e7e0a4308d1099292cddf3bcf1b341729632873000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding multi_col cases to run_bindiff.py and adding new multicol BFBness test. 2024-10-22 16:34:33 -05004cc54e585f1e7e0a4308d1099292cddf3bcf1b34Adding multi_col cases to run_bindiff.py and adding new multicol BFBness test.editrun_scripts/run_bindiff_all.pyaddjenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfilejenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfilejenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfilejenkins_tests/clubb_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfilejenkins_tests/clubb_bin_diff_regression_e3sm_flags_gfortran/Jenkinsfilejenkins_tests/clubb_BFB_multi_col_nvhpc_test/Jenkinsfilejenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfilejenkins_tests/clubb_BFB_r8029_flags_gfortran_test/.Jenkinsfile.swpjenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/.Jenkinsfile.swpjenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile63d63ba7a3755fa87c6c9aeae24e60a9c2f1fe221729640904000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenaming some jenkins tests and making them use a new directory structure. 2024-10-22 18:48:24 -050063d63ba7a3755fa87c6c9aeae24e60a9c2f1fe22Renaming some jenkins tests and making them use a new directoryaddjenkins_tests/clubb_BFB_multi_col_nvhpc_test/Jenkinsfileaddjenkins_tests/clubb_BFB_r8029_flags_gfortran_test/.Jenkinsfile.swpdeletejenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfiledeletejenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/.Jenkinsfile.swpaddjenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfileaddjenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfiledeletejenkins_tests/clubb_bin_diff_regression_gfortran_test/Jenkinsfiledeletejenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfileaddjenkins_tests/clubb_BFB_gfortran_test/Jenkinsfiledeletejenkins_tests/clubb_bin_diff_regression_e3sm_flags_gfortran/Jenkinsfilejenkins_tests/clubb_BFB_multi_col_nvhpc_test/Jenkinsfilejenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfilef2ae5b70703e3a86d145983b4fea098cbb8925a31729649590000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging test name to indicate that it runs on GPUs. 2024-10-22 21:13:10 -0500f2ae5b70703e3a86d145983b4fea098cbb8925a3Changing test name to indicate that it runs on GPUs.addjenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfiledeletejenkins_tests/clubb_BFB_multi_col_nvhpc_test/Jenkinsfilejenkins_tests/clubb_nvhpc_gpu_vs_cpu_plot/Jenkinsfilejenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfilejenkins_tests/clubb_ifort_debug_plot/Jenkinsfilejenkins_tests/clubb_plot_ifort_debug/Jenkinsfile75fd9262981e736aed8bc8995ec4f2c88bd03d121729719423000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdates to jenkins scripts. 2024-10-23 16:37:03 -050075fd9262981e736aed8bc8995ec4f2c88bd03d12Updates to jenkins scripts.deletejenkins_tests/clubb_nvhpc_gpu_vs_cpu_plot/Jenkinsfileaddjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfiledeletejenkins_tests/clubb_ifort_debug_plot/Jenkinsfileaddjenkins_tests/clubb_plot_ifort_debug/Jenkinsfilejenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfilejenkins_tests/clubb_plot_ifort_debug/Jenkinsfileec720a8fe4132c9af37967fd3060080097b131821729720475000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating script usage in plot tests. 2024-10-23 16:54:35 -0500ec720a8fe4132c9af37967fd3060080097b13182Updating script usage in plot tests.editjenkins_tests/clubb_plot_ifort_debug/Jenkinsfileeditjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfilesrc/CLUBB_core/advance_wp2_wp3_module.F909bf49fa9793a4099bed172f4959966bc149908641729779844000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the loops for the wp3 ta term (using ADG1 PDF) symmetric. Prior to this, they ran from thermo levels 2 to nzt-2. This change makes them symmetric by running them from 2 to nzt-1. There are no degradations to the results as a result of this change. This change makes it easier to generalize CLUBB's grid for both ascending and descending grid directions. The results of this change are BIT_CHANGING. 2024-10-24 09:24:04 -05009bf49fa9793a4099bed172f4959966bc14990864I am making the loops for the wp3 ta term (using ADG1 PDF) symmetric.editsrc/CLUBB_core/advance_wp2_wp3_module.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.pyb8f56bfbb5e2cfffef574401cef020a6971fcbdd1729785100000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: 1) Add beginnings of maps of SVD pattern, although this task is unfinished. 2) Normalize all regions by global mean, rather than normalizing each region separately. 3) Make sensitivities signed in sensitivity versus bias scatterplot. For #910. 2024-10-24 10:51:40 -0500b8f56bfbb5e2cfffef574401cef020a6971fcbddQuadTune: 1) Add beginnings of maps of SVD pattern, although this task is unfinished. 2) Normalize all regions by global mean, rather than normalizing each region separately. 3) Make sensitivities signed in sensitivity versus bias scatterplot.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/create_figs.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pypostprocessing/pyplotgen/config/VariableGroupLiquidMP.pypostprocessing/pyplotgen/src/OutputHandler.pypostprocessing/pyplotgen/config/VariableGroupTaus.pypostprocessing/pyplotgen/config/VariableGroupSamBudgets.pypostprocessing/pyplotgen/config/VariableGroupBase.pypostprocessing/pyplotgen/config/VariableGroupNondimMoments.pypostprocessing/pyplotgen/config/VariableGroupIceMP.pypostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pypostprocessing/pyplotgen/config/VariableGroupSamProfiles.pypostprocessing/pyplotgen/pyplotgen.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pyabddfa273c6176d1565bffc4f1d8d31a567623471729805710000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd sam bv calc (#1141) Added calculation function for SAM plots to pyplotgen for Brunt-Väisälä frequency squared CLUBB ticket #1132 Calculated by `N2 = g/thetav * dthetav/dz` 2024-10-24 16:35:10 -0500abddfa273c6176d1565bffc4f1d8d31a56762347Add sam bv calc (#1141)editpostprocessing/pyplotgen/config/VariableGroupSamProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupLiquidMP.pyeditpostprocessing/pyplotgen/config/VariableGroupTaus.pyeditpostprocessing/pyplotgen/config/VariableGroupSamBudgets.pyeditpostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupIceMP.pyeditpostprocessing/pyplotgen/config/VariableGroupBase.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pyeditpostprocessing/pyplotgen/pyplotgen.pyeditpostprocessing/pyplotgen/src/OutputHandler.pyeditpostprocessing/pyplotgen/config/VariableGroupNondimMoments.pyutilities/sens_matrix/create_figs.py81fa0e3bef38ab4a734aa95e5f8b4dacb07767431729890078000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Display maps of the first 4 SVD patterns using dash, rather than make_subplots. Also, show maps of the sensitivity to individual parameters. For #910. 2024-10-25 16:01:18 -050081fa0e3bef38ab4a734aa95e5f8b4dacb0776743QuadTune: Display maps of the first 4 SVD patterns using dash, rather than make_subplots.editutilities/sens_matrix/create_figs.pyutilities/sens_matrix/create_figs.py0bb668e3a21dce9af466abc9f0e747fbb7b36eab1729964291000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Create 2 new plots. 1) colored matrix plot of SVD vh matrix; and 2) bar chart of importance of parameters For #910. 2024-10-26 12:38:11 -05000bb668e3a21dce9af466abc9f0e747fbb7b36eabQuadTune: Create 2 new plots.editutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pye525bd0e3c6333eb4b9945f6fe81d7a9e3cfd3e31730139241000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations. Also plot signed sum of contributions, in order to see how biases affect which parameters are tuned. For #910. 2024-10-28 13:14:01 -0500e525bd0e3c6333eb4b9945f6fe81d7a9e3cfd3e3QuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations.editutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.pyd7d04ed1c8a65801bfc91bbbe4227ef39f7f72921730139276000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations. Also plot signed sum of contributions, in order to see how biases affect which parameters are tuned. For #910. 2024-10-28 13:14:36 -0500d7d04ed1c8a65801bfc91bbbe4227ef39f7f7292QuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations.editutilities/sens_matrix/create_figs.pyrun_scripts/run_bindiff_all.py2651012ea532b1d38ef6006d7457571806e349081730146386000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall improvements to bindiff script. 2024-10-28 15:13:06 -05002651012ea532b1d38ef6006d7457571806e34908Small improvements to bindiff script.editrun_scripts/run_bindiff_all.pysrc/input_fields.F90src/soil_vegetation.F90src/clubb_driver.F906127c5594dc2a5ce46d584822f805af6aeb790281730337999000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING bug fix with soil veg (#1200) * Bug fix with soil veg. This is BIT_CHANGING. * Outputting soil_heat_flux locally. 2024-10-30 20:26:39 -05006127c5594dc2a5ce46d584822f805af6aeb79028BIT_CHANGING bug fix with soil veg (#1200)editsrc/input_fields.F90editsrc/soil_vegetation.F90editsrc/clubb_driver.F90input/case_setups/dycoms2_rf02_do_model.LR.insrc/Benchmark_cases/arm_0003.F90src/Benchmark_cases/arm_3year.F90input/case_setups/dycoms2_rf02_so_model.HR.insrc/Benchmark_cases/atex.F90input/case_setups/dycoms2_rf02_ds_model.insrc/Benchmark_cases/gabls3_night.F90src/Benchmark_cases/dycoms2_rf02.F90src/Benchmark_cases/wangara.F90input/case_setups/neutral_model.insrc/Benchmark_cases/astex_a209.F90src/Benchmark_cases/arm_97.F90src/time_dependent_input.F90src/Benchmark_cases/twp_ice.F90src/Benchmark_cases/sfc_flux.F90src/Benchmark_cases/mpace_b.F90src/Benchmark_cases/dycoms2_rf01.F90src/Benchmark_cases/gabls3.F90src/Benchmark_cases/rico.F90input/case_setups/dycoms2_rf02_nd_model.LR.insrc/Benchmark_cases/gabls2.F90input/case_setups/dycoms2_rf02_nd_model.HR.insrc/Benchmark_cases/spec_hum_to_mixing_ratio.F90src/Benchmark_cases/nov11.F90src/Benchmark_cases/mpace_a.F90input/case_setups/dycoms2_rf02_do_model.insrc/Benchmark_cases/cloud_feedback.F90src/Benchmark_cases/bomex.F90input/case_setups/dycoms2_rf02_morr_model.ininput/case_setups/dycoms2_rf02_so_model.LR.insrc/Benchmark_cases/fire.F90src/clubb_driver.F90input/case_setups/dycoms2_rf02_nd_model.ininput/case_setups/dycoms2_rf02_do_model.HR.ininput/case_setups/dycoms2_rf02_ds_model.HR.insrc/Benchmark_cases/cobra.F90input/case_setups/dycoms2_rf02_ds_model.LR.insrc/Benchmark_cases/neutral_case.F90input/case_setups/dycoms2_rf02_so_model.insrc/Benchmark_cases/lba.F90src/Benchmark_cases/arm.F906536d39b98831758cff149e705fa3605f90ffdf01730499141000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPrescribe forcings loop pushing (#1201) * Outputting soil_heat_flux locally. * Adding if statements around things * Pushing some loops down * Merging soil_veg changes * More loop pushes * Merging soil_veg changes * More loop pushes * More loop pushes * Bug fix detected with twp_ice * Pushing loops even more * Pushing loops into compute_wpthlp_sfc and compute_wpthlp_sfc, also making them subroutines. * Removing accidentially committed file. * Fixing merge errors. * Fixing bug that was breaking only dycoms2_rf02_so. It only broke this case since it is the only one that has l_cloud_sed=.true. and microphys_scheme=none * Adding to rad if statement to prevent unneccesary calls. * Moving stats statement for things like rcm_mc and rvm_mc out of the if microphys statement. This is an additional fix to the dycoms2_rf02_so issue. * Chaning T_sfc_calc to T_sfc_interp where it's caluclated with interpolation. 2024-11-01 17:12:21 -05006536d39b98831758cff149e705fa3605f90ffdf0Prescribe forcings loop pushing (#1201)editinput/case_setups/dycoms2_rf02_do_model.ineditinput/case_setups/dycoms2_rf02_morr_model.ineditinput/case_setups/dycoms2_rf02_do_model.HR.ineditsrc/Benchmark_cases/arm_97.F90editinput/case_setups/neutral_model.ineditsrc/Benchmark_cases/fire.F90editinput/case_setups/dycoms2_rf02_ds_model.HR.ineditsrc/Benchmark_cases/spec_hum_to_mixing_ratio.F90editinput/case_setups/dycoms2_rf02_do_model.LR.ineditsrc/Benchmark_cases/bomex.F90editsrc/Benchmark_cases/cobra.F90editsrc/time_dependent_input.F90editinput/case_setups/dycoms2_rf02_so_model.HR.ineditinput/case_setups/dycoms2_rf02_so_model.ineditsrc/Benchmark_cases/gabls3_night.F90editsrc/Benchmark_cases/mpace_a.F90editsrc/Benchmark_cases/gabls2.F90editsrc/Benchmark_cases/twp_ice.F90editinput/case_setups/dycoms2_rf02_ds_model.ineditsrc/Benchmark_cases/sfc_flux.F90editsrc/Benchmark_cases/arm.F90editsrc/Benchmark_cases/astex_a209.F90editsrc/clubb_driver.F90editsrc/Benchmark_cases/atex.F90editinput/case_setups/dycoms2_rf02_nd_model.HR.ineditsrc/Benchmark_cases/dycoms2_rf02.F90editinput/case_setups/dycoms2_rf02_so_model.LR.ineditsrc/Benchmark_cases/mpace_b.F90editsrc/Benchmark_cases/lba.F90editsrc/Benchmark_cases/arm_3year.F90editsrc/Benchmark_cases/gabls3.F90editsrc/Benchmark_cases/nov11.F90editsrc/Benchmark_cases/dycoms2_rf01.F90editinput/case_setups/dycoms2_rf02_nd_model.LR.ineditinput/case_setups/dycoms2_rf02_ds_model.LR.ineditsrc/Benchmark_cases/rico.F90editsrc/Benchmark_cases/wangara.F90editsrc/Benchmark_cases/neutral_case.F90editsrc/Benchmark_cases/arm_0003.F90editinput/case_setups/dycoms2_rf02_nd_model.ineditsrc/Benchmark_cases/cloud_feedback.F90utilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pybedc6f80e28c38b2c78facb93536d3e56ff2a4881730745519000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Plot orange x on threeDot panels in order to represent what change QuadTune actually wants to make to the metrics. For #910. 2024-11-04 12:38:39 -0600bedc6f80e28c38b2c78facb93536d3e56ff2a488QuadTune: Plot orange x on threeDot panels in order to represent what change QuadTune actually wants to make to the metrics.editutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/Benchmark_cases/arm_0003.F90src/CLUBB_core/interpolation.F90src/Benchmark_cases/arm_3year.F90src/Benchmark_cases/atex.F90src/Benchmark_cases/gabls3_night.F90compile/convert_acc_to_omp.bashsrc/Benchmark_cases/wangara.F90src/Benchmark_cases/dycoms2_rf02.F90src/Benchmark_cases/diag_ustar_module.F90src/Benchmark_cases/astex_a209.F90src/time_dependent_input.F90src/Benchmark_cases/arm_97.F90src/Benchmark_cases/twp_ice.F90src/Benchmark_cases/sfc_flux.F90src/Benchmark_cases/mpace_b.F90src/Benchmark_cases/dycoms2_rf01.F90src/Benchmark_cases/gabls3.F90src/Benchmark_cases/rico.F90src/Benchmark_cases/gabls2.F90src/Benchmark_cases/spec_hum_to_mixing_ratio.F90src/Benchmark_cases/nov11.F90src/Benchmark_cases/cloud_feedback.F90src/Benchmark_cases/bomex.F90src/Benchmark_cases/fire.F90src/clubb_driver.F90src/Benchmark_cases/cobra.F90src/Benchmark_cases/neutral_case.F90src/Benchmark_cases/lba.F90src/Benchmark_cases/arm.F90aff1bb12551c5b3a8ab1c4d773ef5c17fb96c53b1730750376000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPrescribe Forcings GPUization (#1204) * First bit of prescribe forcings GPUization. Only tested with arm so far. * Cherry-pick merge * Missed file * GPUizing more cases * Rest of cases GPUized * Little more GPUization and fixes. * Bug fix to minloc calculation affecting cases with l_modify_bc_for_cnvg_test=.true., unclear why this is a bug. Also adding ifdef around print in GPU code * Adding Benchmark_cases to OMP conversion list 2024-11-04 13:59:36 -0600aff1bb12551c5b3a8ab1c4d773ef5c17fb96c53bPrescribe Forcings GPUization (#1204)editsrc/Benchmark_cases/arm.F90editsrc/Benchmark_cases/fire.F90editcompile/convert_acc_to_omp.basheditsrc/Benchmark_cases/astex_a209.F90editsrc/Benchmark_cases/rico.F90editsrc/Benchmark_cases/lba.F90editsrc/time_dependent_input.F90editsrc/Benchmark_cases/spec_hum_to_mixing_ratio.F90editsrc/CLUBB_core/interpolation.F90editsrc/Benchmark_cases/bomex.F90editsrc/Benchmark_cases/atex.F90editsrc/Benchmark_cases/mpace_b.F90editsrc/Benchmark_cases/arm_3year.F90editsrc/Benchmark_cases/nov11.F90editsrc/Benchmark_cases/arm_0003.F90editsrc/Benchmark_cases/gabls3_night.F90editsrc/Benchmark_cases/arm_97.F90editsrc/Benchmark_cases/diag_ustar_module.F90editsrc/Benchmark_cases/twp_ice.F90editsrc/Benchmark_cases/dycoms2_rf01.F90editsrc/Benchmark_cases/sfc_flux.F90editsrc/Benchmark_cases/gabls2.F90editsrc/Benchmark_cases/wangara.F90editsrc/Benchmark_cases/gabls3.F90editsrc/Benchmark_cases/cobra.F90editsrc/Benchmark_cases/dycoms2_rf02.F90editsrc/Benchmark_cases/neutral_case.F90editsrc/Benchmark_cases/cloud_feedback.F90editsrc/clubb_driver.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.py3301537e76921afc9e7bb6a3c8b37a1b0005671c1730761790000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Fix commit bug and add numXBoxes. For #910. 2024-11-04 17:09:50 -06003301537e76921afc9e7bb6a3c8b37a1b0005671cQuadTune: Fix commit bug and add numXBoxes.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pysrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/clubb_api_module.F9090d139d2d9f8ccfdbe6e3705adfa4e7a9117aeec1731009552000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving Lscale from an acc create statement inside clubb to the acc output statement in clubb_api. This is bug fix that is BIT_CHANGING, but only for silhs cases running on the GPU. Also using this to add BIT_CHANGING:aff1bb12551c5b3a8ab1c4d773ef5c17fb96c53b, as that commit was BC but just missing the message. 2024-11-07 13:59:12 -060090d139d2d9f8ccfdbe6e3705adfa4e7a9117aeecMoving Lscale from an acc create statement inside clubb to the acc output statement in clubb_api. This is bug fix that is BIT_CHANGING, but only for silhs cases running on the GPU. Also using this to add BIT_CHANGING:aff1bb12551c5b3a8ab1c4d773ef5c17fb96c53b, as that commit was BC but just missing the message.editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/clubb_api_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/clubb_standalone.F90src/CLUBB_core/output_netcdf.F90run_scripts/create_multi_col_params.pysrc/jacobian.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/calc_pressure.F90src/error.F90src/clubb_thread_test.F90src/hydrostatic_module.F90a1fcfe8d0eff3f15d3fca37af1fe263cd6203cd91731015610000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comVarious Small Tweaks (#1205) * Batching multicol output. Unfinished, need to make calls_p_out a namelist input and handle the case that it doesn't evenly divide the total number of timesteps. * Pushin column loop into initialize_clubb_variables * Adding explicit loops in main timestepping loop and pushing columns loop into l_calc_thlp2_rad * Various small loop pushes and improvements. * Adding argument to create_multi_col_params.py to add calls_p_out to namelist. * Final little tweaks * Tiny fixes * Changing var name calls_p_out to calls_per_out 2024-11-07 15:40:10 -0600a1fcfe8d0eff3f15d3fca37af1fe263cd6203cd9Various Small Tweaks (#1205)editsrc/clubb_driver.F90editsrc/CLUBB_core/output_netcdf.F90editrun_scripts/create_multi_col_params.pyeditsrc/clubb_standalone.F90editsrc/hydrostatic_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/error.F90editsrc/CLUBB_core/calc_pressure.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/clubb_thread_test.F90editsrc/jacobian.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyfa4b24b4d37aabefbd37d6ebcaab6425016cada31731086888000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: 1) Create new plot that shows tuning tradeoffs via U dot bias. 2) Improve bar chart showing the mean contribution of different parameters. For #910. 2024-11-08 11:28:08 -0600fa4b24b4d37aabefbd37d6ebcaab6425016cada3QuadTune: 1) Create new plot that shows tuning tradeoffs via U dot bias. 2) Improve bar chart showing the mean contribution of different parameters.editutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pysrc/CLUBB_core/advance_clubb_core_module.F902c534889b08af602b0652a339364119dfcd595a71731108979000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking a correction to the doubled plus sign from commit a1fcfe8. 2024-11-08 17:36:19 -06002c534889b08af602b0652a339364119dfcd595a7Making a correction to the doubled plus sign from commit a1fcfe8.editsrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90c365e917824d4ca09c1a28b5c1f782bfd17735621731347440000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAs part of generalizing the code to work with both an ascending and descending grid, I discovered an issue. The issue occurs in the xp2/xpyp "upwind" turbulent advection code and involves the "sgn_" variables. Ultimately, for other PDFs, I was setting this variable using equations of the form sign( one, variable) which set the value to either 1 or -1 no matter the value of variable. However, for the ADG1 PDF, I was lazy and simply just set the value of sgn_ to be equal to wp3_on_wp2. The issue arose when wp3_on_wp2 had a value of 0, and therefore is neither negative or positive. To rectifiy the issue, all settings of "sgn_" variables now use equations of the form sign( one, variable ). For a vast majority of cases, this change had absolutely no effect on the results and everything stayed bit-for-bit. However, BIT_CHANGING results were detected for CGILS S6, MC3E, and TWP-ICE. 2024-11-11 11:50:40 -0600c365e917824d4ca09c1a28b5c1f782bfd1773562As part of generalizing the code to work with both an ascending andeditsrc/CLUBB_core/advance_xp2_xpyp_module.F90input/case_setups/cloud_feedback_s6_p2k_model.insrc/Benchmark_cases/atex.F90input/case_setups/cgils_s12_model.ininput/case_setups/mc3e_model.ininput/case_setups/cgils_s6_model.ininput/case_setups/cobra_model.ininput/case_setups/arm_97_model.ininput/case_setups/lba_model.ininput/case_setups/atex_model.ininput/case_setups/gabls3_model.ininput/case_setups/nov11_altocu_model.ininput/case_setups/mpace_b_silhs_model.ininput/case_setups/dycoms2_rf02_nd_model.LR.ininput/case_setups/rico_silhs_model.insrc/SILHS/latin_hypercube_driver_module.F90input/case_setups/mpace_a_model.ininput/case_setups/cgils_s11_model.ininput/case_setups/cloud_feedback_s11_model.ininput/case_setups/mpace_b_model.ininput/case_setups/dycoms2_rf02_so_model.LR.inrun_scripts/create_multi_col_params.pyinput/case_setups/dycoms2_rf02_do_model.HR.ininput/case_setups/dycoms2_rf02_ds_model.HR.ininput/case_setups/arm_0003_model.ininput/case_setups/dycoms2_rf02_so_model.injenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileinput/case_setups/astex_a209_model.ininput/case_setups/dycoms2_rf02_do_model.LR.ininput/case_setups/bomex_model.ininput/case_setups/dycoms2_rf01_model.ininput/case_setups/cloud_feedback_s12_model.ininput/case_setups/dycoms2_rf02_so_model.HR.inrun_scripts/check_mirrored_multi_col_output.pyinput/case_setups/dycoms2_rf02_ds_model.ininput/case_setups/gabls2_model.insrc/SILHS/transform_to_pdf_module.F90input/case_setups/cgils_s6_p2k_model.ininput/case_setups/rico_model.ininput/case_setups/cloud_feedback_s6_model.ininput/case_setups/arm_model.ininput/case_setups/neutral_model.ininput/case_setups/twp_ice_model.ininput/case_setups/READMEinput/case_setups/clex9_nov02_model.ininput/case_setups/jun25_altocu_model.ininput/case_setups/fire_model.ininput/case_setups/arm_3year_model.ininput/case_setups/cloud_feedback_s12_p2k_model.ininput/case_setups/dycoms2_rf02_nd_model.HR.ininput/case_setups/cloud_feedback_s11_p2k_model.ininput/case_setups/dycoms2_rf02_do_model.ininput/case_setups/dycoms2_rf02_morr_model.insrc/clubb_driver.F90input/case_setups/dycoms2_rf02_nd_model.ininput/case_setups/cgils_s11_p2k_model.ininput/case_setups/cgils_s12_p2k_model.ininput/case_setups/dycoms2_rf02_ds_model.LR.ininput/case_setups/gabls3_night_model.ininput/case_setups/wangara_model.ininput/case_setups/clex9_oct14_model.ininput/case_setups/dycoms2_rf01_fixed_sst_model.inc13dc43f7deeb933c47f48557f841b5d6d4cd6211731438290000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMulti Column Mirror Test (#1206) * Making fcor_nl to set multi_col version of fcor. This is a BIT_CHANGING bug fix that only affects the extra columns. * Removing async clauses in silhs. * Adding option to silhs to copy the random number pool from the first column to all the others. * Fixing fcor name in arm_97_model.in * Fixing small bug in cases that run non-silhs radiation. * Fixing missing acc statement in atex code * Adding scripts for new test * Script update * Script update * Script update * Script update * Script update * Script update * Test error * Test error * Test error * Script update * Script update * Script update * Script update * Script update * Script updates * Script updates * Final update to script 2024-11-12 13:04:50 -0600c13dc43f7deeb933c47f48557f841b5d6d4cd621Multi Column Mirror Test (#1206)editinput/case_setups/mc3e_model.ineditsrc/clubb_driver.F90editinput/case_setups/dycoms2_rf02_so_model.LR.ineditinput/case_setups/gabls3_model.ineditinput/case_setups/arm_0003_model.ineditinput/case_setups/READMEeditinput/case_setups/arm_3year_model.ineditinput/case_setups/arm_model.ineditinput/case_setups/cloud_feedback_s11_model.ineditinput/case_setups/cgils_s6_p2k_model.ineditinput/case_setups/arm_97_model.ineditinput/case_setups/cgils_s11_p2k_model.ineditinput/case_setups/twp_ice_model.ineditinput/case_setups/dycoms2_rf02_ds_model.ineditinput/case_setups/astex_a209_model.ineditinput/case_setups/cloud_feedback_s6_model.ineditinput/case_setups/cgils_s12_p2k_model.ineditinput/case_setups/dycoms2_rf02_nd_model.ineditinput/case_setups/fire_model.ineditinput/case_setups/wangara_model.ineditinput/case_setups/dycoms2_rf01_model.inaddjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditinput/case_setups/dycoms2_rf02_nd_model.LR.ineditinput/case_setups/dycoms2_rf02_morr_model.ineditinput/case_setups/mpace_b_model.ineditinput/case_setups/cgils_s6_model.ineditinput/case_setups/cloud_feedback_s12_p2k_model.ineditinput/case_setups/dycoms2_rf02_nd_model.HR.ineditinput/case_setups/rico_model.ineditsrc/Benchmark_cases/atex.F90addrun_scripts/check_mirrored_multi_col_output.pyeditinput/case_setups/dycoms2_rf02_do_model.LR.ineditinput/case_setups/dycoms2_rf02_so_model.ineditinput/case_setups/dycoms2_rf02_do_model.ineditinput/case_setups/lba_model.ineditinput/case_setups/bomex_model.ineditinput/case_setups/cgils_s11_model.ineditinput/case_setups/dycoms2_rf02_do_model.HR.ineditinput/case_setups/dycoms2_rf01_fixed_sst_model.ineditrun_scripts/create_multi_col_params.pyeditinput/case_setups/cloud_feedback_s12_model.ineditinput/case_setups/cloud_feedback_s6_p2k_model.ineditinput/case_setups/neutral_model.ineditinput/case_setups/nov11_altocu_model.ineditinput/case_setups/cobra_model.ineditinput/case_setups/jun25_altocu_model.ineditinput/case_setups/mpace_b_silhs_model.ineditinput/case_setups/gabls2_model.ineditinput/case_setups/clex9_nov02_model.ineditinput/case_setups/dycoms2_rf02_ds_model.HR.ineditsrc/SILHS/transform_to_pdf_module.F90editinput/case_setups/cgils_s12_model.ineditinput/case_setups/cloud_feedback_s11_p2k_model.ineditinput/case_setups/dycoms2_rf02_so_model.HR.ineditinput/case_setups/gabls3_night_model.ineditsrc/SILHS/latin_hypercube_driver_module.F90editinput/case_setups/atex_model.ineditinput/case_setups/rico_silhs_model.ineditinput/case_setups/clex9_oct14_model.ineditinput/case_setups/mpace_a_model.ineditinput/case_setups/dycoms2_rf02_ds_model.LR.injenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfilesrc/SILHS/silhs_api_module.F90src/SILHS/transform_to_pdf_module.F90src/SILHS/latin_hypercube_driver_module.F90src/CLUBB_core/pdf_utilities.F90src/soil_vegetation.F90jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilesrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/output_netcdf.F90jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfilesrc/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90run_scripts/test_monoflux_limiter_GPU.pysrc/CLUBB_core/mono_flux_limiter.F90jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfilerun_scripts/check_multi_col_error.pybb0b6c6de3c0b80ef8599dc9ea18219146ddb20c1731982903000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb Driver Semi GPUization Part4 (#1209) * Initial GPUization, and testing multi_col output method as single precision. * advance_clubb_core tweaks * Adding radht acc update * Updates * Adding new flags to the mono_flux test to prevent CPU and GPU divergence which breaks it. * Small changes and improvements. * Making new monoflux test lines * Reworking some SILHS GPUization to make it more similar to the GPU code in the rest of clubb. This adds some extra parts that run on GPUs, so it is BIT_CHANGING * Cleanup and comment update * Cleanup * Removing DCUDA flag from compile config scripts to help GPU and CPU results match for silhs cases * Removing accidentally added file. * Updating script * Updating script * Updating script * Updating tolerance in script to handle rico_silhs differences, and hopefully final GPU updates * Small cleanup * Adding option to multi_col diff check script to scale the differences by the field avg. This is only needed (so far) for thlm differences that are slightly too large * Testing gpu lock method * Adding GPU locking to rest of GPU tests. * Small fixes 2024-11-18 20:21:43 -0600bb0b6c6de3c0b80ef8599dc9ea18219146ddb20cClubb Driver Semi GPUization Part4 (#1209)editsrc/CLUBB_core/advance_clubb_core_module.F90editjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditsrc/soil_vegetation.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/pdf_utilities.F90editsrc/CLUBB_core/output_netcdf.F90editsrc/SILHS/transform_to_pdf_module.F90editsrc/clubb_driver.F90editsrc/SILHS/latin_hypercube_driver_module.F90editjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileeditjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfileeditrun_scripts/check_multi_col_error.pyeditsrc/SILHS/silhs_api_module.F90editjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileeditsrc/CLUBB_core/mono_flux_limiter.F90editrun_scripts/test_monoflux_limiter_GPU.pyutilities/sens_matrix/create_figs.py90da93a5bb3dc5a7b27f02b45978ce1cf9bef6fd1732038377000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Plot a map of the change in the loss function for each region. This map tells us which regions are improved and which are degraded. I.e., it displays the tuning trade-offs. For #910. 2024-11-19 11:46:17 -060090da93a5bb3dc5a7b27f02b45978ce1cf9bef6fdQuadTune: Plot a map of the change in the loss function for each region.editutilities/sens_matrix/create_figs.pypostprocessing/pyplotgen/src/ContourPanel.pypostprocessing/pyplotgen/config/Style_definitions.pypostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/VariableGroupCorrelations.py9c043092f464dd4e353d3ff565e7f7c09c73dac61732048487000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed time-height plot colormaps (#1210) CLUBB ticket #1164 Added a "quick" fix for the generation of the time-height plot colormaps when variables are not correlations (i.e. values outside of [-1;1]) Updated VariableGroupCorrelations to include all correlations that are usually output in CLUBB. 2024-11-19 14:34:47 -06009c043092f464dd4e353d3ff565e7f7c09c73dac6Fixed time-height plot colormaps (#1210)editpostprocessing/pyplotgen/config/Style_definitions.pyeditpostprocessing/pyplotgen/src/VariableGroup.pyeditpostprocessing/pyplotgen/config/VariableGroupCorrelations.pyeditpostprocessing/pyplotgen/src/ContourPanel.pyrun_scripts/check_multi_col_avg.pysrc/clubb_standalone.F90src/CLUBB_core/output_netcdf.F90run_scripts/create_multi_col_params.pysrc/jacobian.F90src/clubb_driver.F90jenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfilerun_scripts/test_monoflux_limiter_GPU.pysrc/clubb_thread_test.F90src/error.F908572001d7a87cba485b292f57adfb7abc970e4621732270912000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMulti col output update (#1211) * Multi_col output update to enable averaging over timesteps and outputting with single precision. This replaces the timestep batched output method used before, which was only noticably faster at low column numbers. This is technically BC (edited during merge, PR no longer BC), because the single precision output will be interpretted as different from the current double precision output. * Small cleanup * Script updates * Script update * Script update * Adding capability to output multi_col as double or single precision using new flag l_output_double_prec. * Removing accidentally added file. * Making new jenkins script run single and double precision tests. * Update to jenkins test 2024-11-22 04:21:52 -06008572001d7a87cba485b292f57adfb7abc970e462Multi col output update (#1211)editsrc/clubb_driver.F90editsrc/clubb_thread_test.F90editsrc/clubb_standalone.F90editsrc/CLUBB_core/output_netcdf.F90editrun_scripts/create_multi_col_params.pyeditsrc/jacobian.F90addrun_scripts/check_multi_col_avg.pyeditrun_scripts/test_monoflux_limiter_GPU.pyaddjenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfileeditsrc/error.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.py91d31581a8a77559266dfc2cc76c09ec71366c161732748242000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Added colorbars to regional map plots. For #910. 2024-11-27 16:57:22 -060091d31581a8a77559266dfc2cc76c09ec71366c16QuadTune: Added colorbars to regional map plots.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.py50fe6be42a8a75a9d62659a64b56a64e8d7bd5a01732981900000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: 1) Change coloring of scatterpoints to represent either loss changes or residuals. 2) Add map of residuals to complement map of bias. For #910. 2024-11-30 09:51:40 -060050fe6be42a8a75a9d62659a64b56a64e8d7bd5a0QuadTune: 1) Change coloring of scatterpoints to represent either loss changes or residuals. 2) Add map of residuals to complement map of bias.editutilities/sens_matrix/create_figs.pysrc/CLUBB_core/clip_explicit.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/error_code.F907447595af2409f56faa42e4fa915078e13a2cbf11733239180000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLikely non-bit-changing housekeeping (#1213) Non-bit-changing housekeeping regarding wp2 clipping CLUBB ticket #1165 Renamed threshold_array -> wp2_min_array Moved upper clipping of wp2 into clip_variance Added warning outputs where wp2 is hard-clipped Added debugging checks to hole-filling and wp2_min_array clipping Some necessary OpenACC-modifications 2024-12-03 09:19:40 -06007447595af2409f56faa42e4fa915078e13a2cbf1Likely non-bit-changing housekeeping (#1213)editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/error_code.F90postprocessing/pyplotgen/src/ContourPanel.pypostprocessing/pyplotgen/config/Style_definitions.pyafcbd644e18802286f1de588197dde479b2297ea1733247598000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix pyplotgen timeheight cmaps (#1212) * Fixed time-height plot colormaps CLUBB ticket #1199 Added a "quick" fix for time-height plot colormaps when variables are not correlations (i.e. values in [-1;1]) Updated VariableGroupCorrelations to include all correlations that are usually output in CLUBB. * Fixed time-height plot colormaps CLUBB ticket #1199 Fixed distinction for colormaps in time-height plots and added tick formatter. We now check the labels for the string "corr" to find correlation variables. Otherwise we just use one-sided or two-sided normed colormaps. 2024-12-03 11:39:58 -0600afcbd644e18802286f1de588197dde479b2297eaFix pyplotgen timeheight cmaps (#1212)editpostprocessing/pyplotgen/config/Style_definitions.pyeditpostprocessing/pyplotgen/src/ContourPanel.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.py7f1ff523d411b020d4b8f71a89668ec8a79a10d91733322634000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: 1) Add bar chart that shows |metric_changes| due to each parameter. 2) Fix colorbars on maps. 3) Allow download of hi-res figures. 4) Make background of scatterplots grey. For #910. 2024-12-04 08:30:34 -06007f1ff523d411b020d4b8f71a89668ec8a79a10d9QuadTune: 1) Add bar chart that shows |metric_changes| due to each parameter. 2) Fix colorbars on maps. 3) Allow download of hi-res figures. 4) Make background of scatterplots grey.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/CLUBB_core/advance_wp2_wp3_module.F909509e1b7c67cfcd60412b46b3f7b110eb85cc1211733327941000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comReduced the upper bound for wp2_min_array to 1.0 (#1214) CLUBB ticket #1165 This is BIT_CHANGING for at least the cases ARM_97 and TWP_ICE, and likely any other more non-standard cases. This change will prevent the minimum clipping value for wp2 from exploding when l_min_wp2_from_corr_wx=.true. 2024-12-04 09:59:01 -06009509e1b7c67cfcd60412b46b3f7b110eb85cc121Reduced the upper bound for wp2_min_array to 1.0 (#1214)editsrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F907b703667bc54f062406c39e6173dc4083dee7db21733422068000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded up2 and vp2 to calculation of wp2_min_array (#1215) CLUBB ticket #1165 This is BIT_CHANGING for the cases ARM_97, ATEX, CGILS_S6, GABLS3_NIGHT, LBA, MPACE_B, and TWP_ICE out of the priority cases. These lines of code were added since the fields `u`, `v`, `rt`, and `thl`, and their correlations with `w` should be treated equally. 2024-12-05 12:07:48 -06007b703667bc54f062406c39e6173dc4083dee7db2Added up2 and vp2 to calculation of wp2_min_array (#1215)editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90utilities/sens_matrix/create_figs.pyeba3ae9e61fd97b54bee120570aaddb9be1564b71733426133000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Add bar chart showing linear vs. nonlinear contributions of each parameter. For #910. 2024-12-05 13:15:33 -0600eba3ae9e61fd97b54bee120570aaddb9be1564b7QuadTune: Add bar chart showing linear vs. nonlinear contributions of each parameter.editutilities/sens_matrix/create_figs.pyinput/tunable_parameters/configurable_model_flags.ininput/tunable_parameters_Lscale/configurable_model_flags.insrc/CLUBB_core/model_flags.F90d7b7306c8f0f7a0150cade9a0d73db293ed895241733514208000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChanged default setting of flag l_min_wp2_from_corr_wx to false (#1216) CLUBB ticket #1165 BIT_CHANGING Changed default setting in configurable_model_flags.in and model_flags.F90 to decrease clipping contribution to `wp2` and increase clipping to `rtp2` and `thl2`. 2024-12-06 13:43:28 -0600d7b7306c8f0f7a0150cade9a0d73db293ed89524Changed default setting of flag l_min_wp2_from_corr_wx to false (#1216)editinput/tunable_parameters/configurable_model_flags.ineditinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/CLUBB_core/model_flags.F90utilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.pyc807b993dc1b68e4a08f6b40d9b1ca8d3a0c1d031733768387000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Add map plots of "linSoln" output from global E3SM runs. For #910. 2024-12-09 12:19:47 -0600c807b993dc1b68e4a08f6b40d9b1ca8d3a0c1d03QuadTune: Add map plots of "linSoln" output from global E3SM runs.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/create_figs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.py373be4b540b7491d836fb01e39d2d8351fb293651734028422000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Include special regions (DYCOMS, HAWAII, etc.), in addition to 20x20 regions. However, the weights are set to epsilon, which wrecks the loss calculation. This will have to be remedied later. For #910. 2024-12-12 12:33:42 -0600373be4b540b7491d836fb01e39d2d8351fb29365QuadTune: Include special regions (DYCOMS, HAWAII, etc.), in addition to 20x20 regions. However, the weights are set to epsilon, which wrecks the loss calculation. This will have to be remedied later.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pysrc/CLUBB_core/mono_flux_limiter.F900b6031b8f484c7143e0edf14eb3537f9999be78e1734129641000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRecoded a loop within the mono flux limiter so that it's written in a more convenient manner to allow for easier coding for generalized gridding. Results are bit-for-bit. 2024-12-13 16:40:41 -06000b6031b8f484c7143e0edf14eb3537f9999be78eRecoded a loop within the mono flux limiter so that it's writteneditsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/mono_flux_limiter.F90e215a047457743d0a235bd5261b7400aeb580bde1734130983000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanged some variable names so that it is clear that, while they contain the word wpxp_, they are actually thermodynamic-level variables. Results are bit-for-bit. 2024-12-13 17:03:03 -0600e215a047457743d0a235bd5261b7400aeb580bdeChanged some variable names so that it is clear that, while they containeditsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/mono_flux_limiter.F902c420dcb69cceaef32bda45193b8dbadc38d1ca21734132394000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWithin the mono flux limiter, a thermodynamic-level variable needed to be interpolated to momentum levels so it could be directly compared to wpxp. The results of this change are BIT_CHANGING for the ARM 97, MC3E, and TWP-ICE cases. 2024-12-13 17:26:34 -06002c420dcb69cceaef32bda45193b8dbadc38d1ca2Within the mono flux limiter, a thermodynamic-level variable needed toeditsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/mono_flux_limiter.F907641404dd67426fd141ddffd90000abb5a58520e1734133196000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot to add the new variable to the Atlantic Coast Conference statements in the previous commit. 2024-12-13 17:39:56 -06007641404dd67426fd141ddffd90000abb5a58520eI forgot to add the new variable to the Atlantic Coast Conferenceeditsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/mono_flux_limiter.F90ec06720353601ed5d790e7ffa43d8ab28d5512fa1734371299000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging a couple loop limits in mono flux limiter. Results do not change. 2024-12-16 11:48:19 -0600ec06720353601ed5d790e7ffa43d8ab28d5512faChanging a couple loop limits in mono flux limiter.editsrc/CLUBB_core/mono_flux_limiter.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pycc24b7290a21866963bcb4d5f21f3f0b6115a2931734464305000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Remedy loss function and facilitate plotting of special, non-20x20 regions (DYCOMS, HAWAII, etc.). For #910. 2024-12-17 13:38:25 -0600cc24b7290a21866963bcb4d5f21f3f0b6115a293QuadTune: Remedy loss function and facilitate plotting of special, non-20x20 regions (DYCOMS, HAWAII, etc.).editutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/advance_helper_module.F90src/CLUBB_core/pdf_utilities.F90673beb053c2f32cc4a92340a492afab4c74f71701734646199000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix binormal correlation clipping (#1199) Fixed clipping in binormal correlation calc CLUBB ticket #1164 BIT_CHANGING * Implemented new denominator with smooth_max clipping * Created subroutine `smooth_corr_quotient` in pdf_utilities.F90, outsourcing smooth correlation division * This subroutine is used `calc_comp_corrs_binormal` and `transform_pdf_chi_eta_component` 2024-12-19 16:09:59 -0600673beb053c2f32cc4a92340a492afab4c74f7170Fix binormal correlation clipping (#1199)editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/pdf_utilities.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/clip_explicit.F90input/tunable_parameters_compatible_r8029/configurable_model_flags.insrc/clubb_tuner.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/clubb_standalone.F90src/clubb_driver.F90src/CLUBB_core/model_flags.F90src/CLUBB_core/stats_clubb_utilities.F90input/tunable_parameters_Lscale/configurable_model_flags.insrc/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/fill_holes.F90input/tunable_parameters/configurable_model_flags.ine430c6b5a72a8a88fa602e13b4cb946d3361895e1737065191000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded new hole-filling method which takes TKE from up2 and vp2 (#1217) Added new hole-filling method which takes TKE from up2 and vp2 CLUBB ticket #1165 BIT_CHANGING if flag `l_wp2_fill_holes_tke` is set to true Introduced new flag `l_wp2_fill_holes_tke` to turn on new wp2 hole-filling subroutine that takes TKE from up2 and vp2. 2025-01-16 16:06:31 -0600e430c6b5a72a8a88fa602e13b4cb946d3361895eAdded new hole-filling method which takes TKE from up2 and vp2 (#1217)editsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/G_unit_test_types/spurious_source_test.F90editinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/clubb_tuner.F90editinput/tunable_parameters_compatible_r8029/configurable_model_flags.ineditsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/clubb_standalone.F90editsrc/CLUBB_core/model_flags.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editinput/tunable_parameters/configurable_model_flags.ineditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/fill_holes.F90jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilerun_scripts/check_multi_col_error.py316180d8b915f47e7ddcf24ecdb81661ee4a2ca21737492438000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFinally fixing gpu_diffness test (#1219) * Modifying diffness test to handle fields with < 0 averages and accept an argument as the threshold. * Overwriting correct variable. 2025-01-21 14:47:18 -0600316180d8b915f47e7ddcf24ecdb81661ee4a2ca2Finally fixing gpu_diffness test (#1219)editjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileeditrun_scripts/check_multi_col_error.pyrun_scripts/run_silhs_test.bash2fbf4c2defd75913f167a34077526832ffbeaff91737670313000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSlightly relaxing the convergence criteria to fix convergence test. 2025-01-23 16:11:53 -06002fbf4c2defd75913f167a34077526832ffbeaff9Slightly relaxing the convergence criteria to fix convergence test.editrun_scripts/run_silhs_test.bashutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.pyfe762cbcb94c872048986f55c9b4ab5e70ea7ea51737811450000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: On matrix-eqn bar chart, plot only extraMetricsToPlot. Add sens-bias scatterplot of only extraMetricsToPlot. In parameter increments bar chart, change absolute values to squares. For #910. 2025-01-25 07:24:10 -0600fe762cbcb94c872048986f55c9b4ab5e70ea7ea5QuadTune: On matrix-eqn bar chart, plot only extraMetricsToPlot. Add sens-bias scatterplot of only extraMetricsToPlot. In parameter increments bar chart, change absolute values to squares.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.py0159cfd38c725851d8f3e92ea2c0c411fdfb2dee1738423460000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Add useLongTitle option, which adds extra information on the plotted quantity, if desired. For #910. 2025-02-01 09:24:20 -06000159cfd38c725851d8f3e92ea2c0c411fdfb2deeQuadTune: Add useLongTitle option, which adds extra information on the plotted quantity, if desired.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/create_figs.pyutilities/sens_matrix/create_figs.py9fbd3da928e373d8cb9b7108cbe56cc997ba68e81738450181000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Plot bias instead of negative bias on metricsBarChart and bias-vs-sensitivity plots. For #910. 2025-02-01 16:49:41 -06009fbd3da928e373d8cb9b7108cbe56cc997ba68e8QuadTune: Plot bias instead of negative bias on metricsBarChart and bias-vs-sensitivity plots.editutilities/sens_matrix/create_figs.pysrc/CLUBB_core/mono_flux_limiter.F90e3707bdb9336e23f2215ba647eb2df43cdab9d9a1738606672000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMonoflux GPU optimization (#1221) * Making a fast version of the serial loop to check if we even need to perform the slow version at all. * Updates * Final touches to make new version logically the same. * Improving comments and variables names 2025-02-03 12:17:52 -0600e3707bdb9336e23f2215ba647eb2df43cdab9d9aMonoflux GPU optimization (#1221)editsrc/CLUBB_core/mono_flux_limiter.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pyd969819b327e31310ce38e44303561aab48757281738961177000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Made plot_PcSensMap work when len(varPrefixes) > 1. For #910. 2025-02-07 14:46:17 -0600d969819b327e31310ce38e44303561aab4875728QuadTune: Made plot_PcSensMap work when len(varPrefixes) > 1.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/bootstrap_calculations.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/bootstrap_plots.pyutilities/sens_matrix/set_up_dashboard_inputs.py112b1d1518ebaad008f69cf0337f2d6466b0ebb01738964377000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comQuadTune: Merge in bootstrap sampling @LuisHasenauer added bootstrap sampling code to QuadTune. Bootstrap calculations are performed if `useBootstrap=T`. Luis and I checked that the best-fit parameter values and weighted chiSqd are unchanged either with `useBootstrap=T` or `useBootstrap=F`. 2025-02-07 15:39:37 -0600112b1d1518ebaad008f69cf0337f2d6466b0ebb0QuadTune: Merge in bootstrap samplingaddutilities/sens_matrix/bootstrap_calculations.pyeditutilities/sens_matrix/create_figs.pyaddutilities/sens_matrix/bootstrap_plots.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pysrc/CLUBB_core/mixing_length.F90adb2c4b1d0d1f187405f733ff704392231fcecc41738965924000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwapping the loop order on a few kernels, I found this faster for the nvhpc compiler and it's BFB 2025-02-07 16:05:24 -0600adb2c4b1d0d1f187405f733ff704392231fcecc4Swapping the loop order on a few kernels, I found this faster for the nvhpc compiler and it's BFBeditsrc/CLUBB_core/mixing_length.F90src/clubb_driver.F9075cd543bfb7f6754b868dc51af85c200a43954271739484770000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBIT_CHANGING bug fix that only affects l_t_dependent cases running with multiple columns, I detected this with cgils cases, but I'm not sure how it slipped through initially. 2025-02-13 16:12:50 -060075cd543bfb7f6754b868dc51af85c200a4395427BIT_CHANGING bug fix that only affects l_t_dependent cases running with multiple columns, I detected this with cgils cases, but I'm not sure how it slipped through initially.editsrc/clubb_driver.F90input/tunable_parameters_compatible_r8029/configurable_model_flags.ininput/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/model_flags.F90input/tunable_parameters_Lscale/configurable_model_flags.in9e59dc4769f9362564a50e74dc1aa8301bf68b341739884009000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSet l_wp2_fill_holes_tke to true by default (#1226) This code change is BIT_CHANGING for extreme cases (e.g. TWP_ICE, LBA, ARM_97). Changed configurable_model_flags.in files and default value in model_flags.F90. For CLUBB ticket #1165. 2025-02-18 07:06:49 -06009e59dc4769f9362564a50e74dc1aa8301bf68b34Set l_wp2_fill_holes_tke to true by default (#1226)editsrc/CLUBB_core/model_flags.F90editinput/tunable_parameters/configurable_model_flags.ineditinput/tunable_parameters_compatible_r8029/configurable_model_flags.ineditinput/tunable_parameters_Lscale/configurable_model_flags.insrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/grid_class.F90src/Benchmark_cases/atex.F90src/CLUBB_core/sfc_varnce_module.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/error_code.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_standalone.F90src/CLUBB_core/output_netcdf.F90src/advance_microphys_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/parameters_tunable.F90src/G_unit_test_types/spurious_source_test.F90src/clubb_thread_test.F90src/CLUBB_core/numerical_check.F90src/CLUBB_core/precipitation_fraction.F90src/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/SILHS/output_2D_samples_module.F90src/CLUBB_core/matrix_solver_wrapper.F90src/jacobian.F90src/simple_rad_module.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/corr_varnce_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/error.F90c7ac128837133579e64d46c7be3fe907a5d6840d1739985373000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove err code (#1218) CLUBB ticket #975 Module variable `err_code` was removed and replaced by intent(inout) subroutine parameters. Added messages to `error stop`s in `clubb_api_module` 2025-02-19 11:16:13 -0600c7ac128837133579e64d46c7be3fe907a5d6840dRemove err code (#1218)editsrc/CLUBB_core/mixing_length.F90editsrc/Benchmark_cases/atex.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/matrix_solver_wrapper.F90editsrc/simple_rad_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/clubb_standalone.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/precipitation_fraction.F90editsrc/CLUBB_core/error_code.F90editsrc/CLUBB_core/parameters_tunable.F90editsrc/jacobian.F90editsrc/advance_microphys_module.F90editsrc/error.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/grid_class.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/sfc_varnce_module.F90editsrc/CLUBB_core/output_netcdf.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/lapack_wrap.F90editsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/corr_varnce_module.F90editsrc/SILHS/output_2D_samples_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/clubb_thread_test.F90src/CLUBB_core/numerical_check.F900e45d985bab99301c6ca49bbcf69e52109d675501739987333000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRenamed check_res to err_code in numerical_check.F90 for consistency (#1227) 2025-02-19 11:48:53 -06000e45d985bab99301c6ca49bbcf69e52109d67550Renamed check_res to err_code in numerical_check.F90 for consistency (#1227)editsrc/CLUBB_core/numerical_check.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/error_code.F90src/clubb_driver.F90327bc1e35f9f2f5c9e58dadab76aa8a4452f711b1740075254000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRevert clubb api module changes (#1228) * Revert intent changes to err_code_api in clubb_api_module to stay consistent with host models CLUBB ticket #975 Reverted changes in advance_clubb_core_api and to corresponding call in run_clubb Since the module variable is not used anywhere anymore, we can also remove it from the module 2025-02-20 12:14:14 -0600327bc1e35f9f2f5c9e58dadab76aa8a4452f711bRevert clubb api module changes (#1228)editsrc/clubb_driver.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/error_code.F90src/CLUBB_core/pdf_closure_module.F90455fbc12e83f4475429afcff526571537f9be66a1740078773000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed equality check in pdf_closure_module (#1229) CLUBB ticket #975 WRF detected this error. Fixed it. 2025-02-20 13:12:53 -0600455fbc12e83f4475429afcff526571537f9be66aFixed equality check in pdf_closure_module (#1229)editsrc/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/interpolation.F90src/clubb_driver.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/model_flags.F90src/time_dependent_input.F90src/Benchmark_cases/atex.F90input/grid/31_level_zm_grid_physics9.grdsrc/G_unit_test_types/pdf_parameter_tests.F90input/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/grid_adaptation.F90src/clubb_tuner.F907783e3a73fe5643538f55dea8418c8adf0d0e4f81740100234000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comadd dycore grid with conservative remapping scheme * add tunable parameter interp_from_dycore_grid_method * add dycore interpolation to atex case with conservative remapping by ullrich * remove new gpu commands * add acc annotation for gpu * remove acc annotation again * add acc annotation for parallel loop * add acc annotations for parallel loop execution * change remapping subroutine to take number of levels and levels as input instead of whole grid object * add more general functions to interpolate * add and refactor functions for remapping values given on zm levels * fix compiler errors and refactoring to stay under 100 chars per line * remove TODOs and used new interpolating function in interpolate_forcings * add functions for adaptive grid generation and grid density function normalization * add conservative ullrich remapping to cases with forcing time dependent inputs * add grid adaptation and flag * clean up and add warning for case when remapping from dycore flag cannot be used * some refactoring * add logical flag for dycore and renamed flags for dycore and grid adaptation * remove ifdefs * refactoring * add units * changed Lscale to inverse --------- Co-authored-by: Steffen Carstensen <steffenc34@icloud.com> 2025-02-20 19:10:34 -06007783e3a73fe5643538f55dea8418c8adf0d0e4f8add dycore grid with conservative remapping schemeeditsrc/Benchmark_cases/atex.F90editsrc/clubb_driver.F90addsrc/CLUBB_core/grid_adaptation.F90editinput/tunable_parameters/configurable_model_flags.ineditsrc/G_unit_test_types/spurious_source_test.F90addinput/grid/31_level_zm_grid_physics9.grdeditsrc/CLUBB_core/interpolation.F90editsrc/clubb_tuner.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/time_dependent_input.F90editsrc/CLUBB_core/model_flags.F90gitspack_setup_files/modules.yaml7ebc79e7fa1437154e860698b865bdd352f081111720547760000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding module file used for spack to sys_admin repo for safe keeping. https://github.com/larson-group/sys_admin/issues/829 2024-07-09 12:56:00 -05007ebc79e7fa1437154e860698b865bdd352f08111Adding module file used for spack to sys_admin repo for safe keeping. https://github.com/larson-group/sys_admin/issues/829addspack_setup_files/modules.yamlset_larson-group_paths/larson-group.shset_larson-group_paths/larson-group.sh_old77c39da06b9b1cf4575bed4d1ac77ae6f4be24d11720738841000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating larson-group.sh for recent spack+module system upgrade https://github.com/larson-group/sys_admin/issues/829 2024-07-11 18:00:41 -050077c39da06b9b1cf4575bed4d1ac77ae6f4be24d1Updating larson-group.sh for recent spack+module system upgrade https://github.com/larson-group/sys_admin/issues/829editset_larson-group_paths/larson-group.shaddset_larson-group_paths/larson-group.sh_oldapache_config/certificate/carson_math_uwm_edu.csrapache_config/mods-enabled/proxy_ajp.loadapache_config/mods-enabled/proxy_http.loadapache_config/mods-enabled/mpm_event.loadapache_config/certificate/carson_math_uwm_edu.keyapache_config/mods-enabled/proxy.confapache_config/mods-enabled/proxy.loadapache_config/mods-enabled/mpm_event.confapache_config/certificate/carson_math_uwm_edu.pemapache_config/certificate/carson_math_uwm_edu_interm.cerapache_config/apache2.conf60b7f9e5600248eff72d55825134d4a3197836021722225605000http://carson.math.uwm.edu/jenkins/user/pickettCole Pickettlarsongroupgithub@gmail.comAutomated apache config backup. 2024-07-28 23:00:05 -050060b7f9e5600248eff72d55825134d4a319783602Automated apache config backup.addapache_config/apache2.confaddapache_config/certificate/carson_math_uwm_edu.csraddapache_config/mods-enabled/proxy.confaddapache_config/mods-enabled/mpm_event.confaddapache_config/mods-enabled/proxy.loadaddapache_config/mods-enabled/proxy_http.loadaddapache_config/certificate/carson_math_uwm_edu_interm.ceraddapache_config/certificate/carson_math_uwm_edu.keyaddapache_config/mods-enabled/proxy_ajp.loadaddapache_config/mods-enabled/mpm_event.loadaddapache_config/certificate/carson_math_uwm_edu.pemset_larson-group_paths/larson-group.sh6a7c801ded8ef3c14775087b5b179d292e26dfb71722886793000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUsing a symlink and find command to automate the lmod path setting. 2024-08-05 14:39:53 -05006a7c801ded8ef3c14775087b5b179d292e26dfb7Using a symlink and find command to automate the lmod path setting.editset_larson-group_paths/larson-group.shnightly_plot_scripts/READMEnightly_plot_scripts/create_plot_list.pya90e7758c579a06bf9817ca059e94a5ee93937a61723952346000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding file used to create nightly plot index.html file. 2024-08-17 22:39:06 -0500a90e7758c579a06bf9817ca059e94a5ee93937a6Adding file used to create nightly plot index.html file.addnightly_plot_scripts/create_plot_list.pyaddnightly_plot_scripts/READMEnightly_plot_scripts/create_plot_list.pynightly_plot_scripts/generate_plot_directory_page.pyf7a958f6ae79d75ac80adcf1b6c400761de7cd6e1723954774000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenaming plot and making clubb_silhs_devel also be displayed on top and default expanded on master. 2024-08-17 23:19:34 -0500f7a958f6ae79d75ac80adcf1b6c400761de7cd6eRenaming plot and making clubb_silhs_devel also be displayed on top and default expanded on master.deletenightly_plot_scripts/create_plot_list.pyaddnightly_plot_scripts/generate_plot_directory_page.pygitUpdateScripts/camClubbUpdate.sh60bd8433f8cff55eda8016e03972b7bc1461437b1727287143000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating to account for new clubb directory structure in cam. 2024-09-25 12:59:03 -050060bd8433f8cff55eda8016e03972b7bc1461437bUpdating to account for new clubb directory structure in cam.editgitUpdateScripts/camClubbUpdate.shpython_nightly_test_suite/bit_diff_clubb_config_examplepython_nightly_test_suite/tests/bit_diff_test.pybde28f604eb8b2821567120ad3a338098760e5011729717017000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdates to script and example template. 2024-10-23 15:56:57 -0500bde28f604eb8b2821567120ad3a338098760e501Updates to script and example template.editpython_nightly_test_suite/tests/bit_diff_test.pyeditpython_nightly_test_suite/bit_diff_clubb_config_examplepython_nightly_test_suite/tests/bit_diff_test.pya563882b107366fe7a8131f92453bc54b0da8ce51730147326000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding if statement to avoid comparing the same commit to itself. 2024-10-28 15:28:46 -0500a563882b107366fe7a8131f92453bc54b0da8ce5Adding if statement to avoid comparing the same commit to itself.editpython_nightly_test_suite/tests/bit_diff_test.pygithttp://carson.math.uwm.edu/jenkins/user/hasenau2hasenau2http://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/pickettCole Picketthttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse343http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/343/341http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/341/