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For ticket #926.
Results are confirmed to be BFB identical.
</comment><date>2021-08-17 10:26:07 -0500</date><id>96163408eb466460b5265a137a826b10242fa390</id><msg>Eliminating l_update_pressure flag.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters_compatible_r8029/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters_e3sm/configurable_model_flags.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><commitId>ab1dfbebc1efbdf262564f50b3a9e5450a7cf9cf</commitId><timestamp>1629389828000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Fixing compilation error caused by flag removal
</comment><date>2021-08-19 11:17:08 -0500</date><id>ab1dfbebc1efbdf262564f50b3a9e5450a7cf9cf</id><msg>Fixing compilation error caused by flag removal</msg><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>input/tunable_parameters_Lscale/configurable_model_flags.in</affectedPath><affectedPath>input/tunable_parameters_e3sm/configurable_model_flags.in</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>input/tunable_parameters_compatible_r8029/configurable_model_flags.in</affectedPath><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><commitId>fe04ac942588573394579558242909b97254ccbb</commitId><timestamp>1629473006000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Eliminating l_upwind_wpxp_ta flag.
For issue #926.
Results are confirmed BFB identical.
</comment><date>2021-08-20 10:23:26 -0500</date><id>fe04ac942588573394579558242909b97254ccbb</id><msg>Eliminating l_upwind_wpxp_ta flag.</msg><path><editType>edit</editType><file>input/tunable_parameters_Lscale/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>input/tunable_parameters_compatible_r8029/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters_e3sm/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>02cccd21b6adb0e05e98f5c06d3be2a6ce7f0cf0</commitId><timestamp>1629816095000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updates to tuner to print the improvement in the individual variables at the end of the tuner run, in addition to the total improvement.

See https://github.com/larson-group/clubb/issues/939#issuecomment-899811865.
</comment><date>2021-08-24 09:41:35 -0500</date><id>02cccd21b6adb0e05e98f5c06d3be2a6ce7f0cf0</id><msg>Updates to tuner to print the improvement in the individual variables at the end of the tuner run, in addition to the total improvement.</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>8901b7ce5a715ef407f741ef8d42eebd7cb5bdcb</commitId><timestamp>1629816095000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Changing the denominator in the variable-by-variable expression so that the individual terms add up to the total percent improvement.

See #939.
</comment><date>2021-08-24 09:41:35 -0500</date><id>8901b7ce5a715ef407f741ef8d42eebd7cb5bdcb</id><msg>Changing the denominator in the variable-by-variable expression so that the individual terms add up to the total percent improvement.</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><commitId>1656d87e61d919b78bfa54fc2d30171d4a9b1601</commitId><timestamp>1629917460000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Updating the surface clipping coefficient...

...to avoid MC3E failure with PGI compiler.  I find all cases run successfully with this coefficient, with ifort, gfortran, and PGI.
</comment><date>2021-08-25 13:51:00 -0500</date><id>1656d87e61d919b78bfa54fc2d30171d4a9b1601</id><msg>Updating the surface clipping coefficient...</msg><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>e8cfbf132e77e340988e90938742ec1912a371d1</commitId><timestamp>1629917565000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Adding blank line to note that my previous commit was BIT_CHANGING.

Also see #921 and #893 regarding the previous commit about the surface clipping coefficient.
</comment><date>2021-08-25 13:52:45 -0500</date><id>e8cfbf132e77e340988e90938742ec1912a371d1</id><msg>Adding blank line to note that my previous commit was BIT_CHANGING.</msg><path><editType>edit</editType><file>README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/test_analyzeSensMatrix.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>6074d7b38f6bd68b4344ab19c9e3ddf8de415e95</commitId><timestamp>1630082416000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Change normalization of sensitivity matrix.
Before it was normalized by (default-observed) values of metrics.
Now it is normalized by 1/obs.  This leaves the sensitivity matrix
free from dependence on the bias and puts the bias entirely
on the right-hand side of the matrix equation.
Also, the parameter values are no longer normalized by max(def,sens)
values.  Instead, they are normalized by the values used
in the default simulation, and a sensitivity simulation value
is used only if the default-simulation value is zero.

Add plots of left-singular vectors and right-singular vectors.
Annotate these plots with singular values.

One of the unit tests, test_3x2_C8transformed, is broken.

For #910.
</comment><date>2021-08-27 11:40:16 -0500</date><id>6074d7b38f6bd68b4344ab19c9e3ddf8de415e95</id><msg>Change normalization of sensitivity matrix.</msg><path><editType>edit</editType><file>utilities/sens_matrix/test_analyzeSensMatrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/model_flags.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/clubb_api_module.F90</affectedPath><affectedPath>input/tunable_parameters_Lscale/configurable_model_flags.in</affectedPath><affectedPath>input/tunable_parameters_e3sm/configurable_model_flags.in</affectedPath><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>input/tunable_parameters/configurable_model_flags.in</affectedPath><affectedPath>src/CLUBB_core/sfc_varnce_module.F90</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><commitId>728531ab73a7f769b1daea31a00fdb2afe821dd9</commitId><timestamp>1630332047000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan</absoluteUrl><fullName>72510114+RhodesKeegan</fullName></author><authorEmail>72510114+RhodesKeegan@users.noreply.github.com</authorEmail><comment>Adding in l_vary_convect_depth as requested.
For ticket #905.
Results are confirmed to be BFB identical.
</comment><date>2021-08-30 09:00:47 -0500</date><id>728531ab73a7f769b1daea31a00fdb2afe821dd9</id><msg>Adding in l_vary_convect_depth as requested.</msg><path><editType>edit</editType><file>src/CLUBB_core/model_flags.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters_e3sm/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>input/tunable_parameters/configurable_model_flags.in</file></path><path><editType>edit</editType><file>input/tunable_parameters_Lscale/configurable_model_flags.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/clubb_api_module.F90</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/sfc_varnce_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>README</affectedPath><commitId>5e8c1c52ff7a270d8d89db7ed98e0ae35bb6203a</commitId><timestamp>1630417521000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removing blank line...

... to note a BIT_CHANGING:1656d87e61d919b78bfa54fc2d30171d4a9b1601 commit.
</comment><date>2021-08-31 08:45:21 -0500</date><id>5e8c1c52ff7a270d8d89db7ed98e0ae35bb6203a</id><msg>Removing blank line...</msg><path><editType>edit</editType><file>README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>da8e9998a0502bb88a7c3d24bc87129045192038</commitId><timestamp>1630547434000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removing a couple of unused parameters from use statement.

These are not caught by the gfortran compiler for whatever reason but the ifort compiler warned about them.
</comment><date>2021-09-01 20:50:34 -0500</date><id>da8e9998a0502bb88a7c3d24bc87129045192038</id><msg>Removing a couple of unused parameters from use statement.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/clip_explicit.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>645764ff028a78e5856d60fd0efd81fe958b31b5</commitId><timestamp>1630599690000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Pushing k loop down through clip_variance_level.
This change is for the files advance_wp2_wp3_module and advance_xp2_xpyp_module.
In order to make this change, I added a new variable in the upper-level subroutine
that is an array version of the variable 'threshold' and passed it along to the lower subroutine.
The loop is still present in order to calculate the values of threshold, however, the calls
to the subroutine is outside of the loop. The only calculations inside the loop is for
and intrensic function, max.
All results are BFB identical for default case along with l_stats_samp being set to true.
For ticket #951.
</comment><date>2021-09-02 11:21:30 -0500</date><id>645764ff028a78e5856d60fd0efd81fe958b31b5</id><msg>Pushing k loop down through clip_variance_level.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/clip_explicit.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/error_arm.in</affectedPath><affectedPath>input_misc/tuner/error_atex.in</affectedPath><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><affectedPath>input_misc/tuner/error_rico.in</affectedPath><affectedPath>input_misc/tuner/error_gabls3_night.in</affectedPath><affectedPath>input_misc/tuner/error_bomex.in</affectedPath><affectedPath>input_misc/tuner/error_nov11_altocu.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf01.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_ds.in</affectedPath><affectedPath>input_misc/tuner/error_arm_97.in</affectedPath><affectedPath>input_misc/tuner/error_all.in</affectedPath><affectedPath>input_misc/tuner/error_lba.in</affectedPath><affectedPath>input_misc/tuner/error_wangara.in</affectedPath><affectedPath>src/error.F90</affectedPath><affectedPath>input_misc/tuner/error_fire.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_do.in</affectedPath><affectedPath>input_misc/tuner/error_gabls2.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_nd.in</affectedPath><affectedPath>input_misc/tuner/error_ticket_756.in</affectedPath><commitId>15b0b34248cb2472b5bfa40a709675aacfde434d</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Udpates to make it possible for us to keep certain parameters equal to each other during tuning.

Includes:

* a new subroutine in parameters_tunable.F90 that will read a new namelist in the error_*.in files
* updates to src/error.F90 to make sure the intended parameters are held equal throughout the tuning run
* updates to src.error.F90 to print the variables that were held equal at the end of the tuning run, together with their beginning and ending values, and updates to ensure that the new tuned values are copied into the new paramters_tunable_*.in file so they can be used for plotting or restarting the tuner.
* includes several simple error checks

See #939.
</comment><date>2021-09-02 19:47:00 -0500</date><id>15b0b34248cb2472b5bfa40a709675aacfde434d</id><msg>Udpates to make it possible for us to keep certain parameters equal to each other during tuning.</msg><path><editType>edit</editType><file>src/error.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_fire.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_atex.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_nd.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm_97.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_nov11_altocu.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_all.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf01.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls2.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_ticket_756.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls3_night.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_lba.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_rico.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_do.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_ds.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_bomex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_wangara.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>3fd43e54aeb0fe3ed07b3f2b3809384c26c6308f</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updates to improve error checking for the tuner, updates to comments.

See #939.
</comment><date>2021-09-02 19:47:00 -0500</date><id>3fd43e54aeb0fe3ed07b3f2b3809384c26c6308f</id><msg>Updates to improve error checking for the tuner, updates to comments.</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>5d3968225001bcf65b88819bf5d44112dfd55520</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Getting rid of a duplication of code.
</comment><date>2021-09-02 19:47:00 -0500</date><id>5d3968225001bcf65b88819bf5d44112dfd55520</id><msg>Getting rid of a duplication of code.</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/error_atex.in</affectedPath><affectedPath>input_misc/tuner/error_arm.in</affectedPath><affectedPath>input_misc/tuner/error_rico.in</affectedPath><affectedPath>input_misc/tuner/error_gabls3_night.in</affectedPath><affectedPath>input_misc/tuner/error_bomex.in</affectedPath><affectedPath>input_misc/tuner/error_nov11_altocu.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf01.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_ds.in</affectedPath><affectedPath>input_misc/tuner/error_all.in</affectedPath><affectedPath>input_misc/tuner/error_arm_97.in</affectedPath><affectedPath>input_misc/tuner/error_lba.in</affectedPath><affectedPath>input_misc/tuner/error_wangara.in</affectedPath><affectedPath>src/error.F90</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_do.in</affectedPath><affectedPath>input_misc/tuner/error_fire.in</affectedPath><affectedPath>input_misc/tuner/error_gabls2.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_nd.in</affectedPath><affectedPath>input_misc/tuner/error_ticket_756.in</affectedPath><commitId>f616391b15b456b19250596e2ba716f2e711ddef</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updating name of l_vary_params_together flag to l_keep_params_equal, since this is probably more clear and also is more consistent with my comments in the code.
</comment><date>2021-09-02 19:47:00 -0500</date><id>f616391b15b456b19250596e2ba716f2e711ddef</id><msg>Updating name of l_vary_params_together flag to l_keep_params_equal, since this is probably more clear and also is more consistent with my comments in the code.</msg><path><editType>edit</editType><file>input_misc/tuner/error_wangara.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_atex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_lba.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls2.in</file></path><path><editType>edit</editType><file>src/error.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_all.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_bomex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_do.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_fire.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls3_night.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_nov11_altocu.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_ticket_756.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf01.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_ds.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_nd.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_rico.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm_97.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><affectedPath>input_misc/tuner/error_atex.in</affectedPath><affectedPath>input_misc/tuner/error_arm.in</affectedPath><affectedPath>input_misc/tuner/error_rico.in</affectedPath><affectedPath>input_misc/tuner/error_gabls3_night.in</affectedPath><affectedPath>input_misc/tuner/error_bomex.in</affectedPath><affectedPath>input_misc/tuner/error_nov11_altocu.in</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_ds.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf01.in</affectedPath><affectedPath>input_misc/tuner/error_all.in</affectedPath><affectedPath>input_misc/tuner/error_arm_97.in</affectedPath><affectedPath>input_misc/tuner/error_lba.in</affectedPath><affectedPath>input_misc/tuner/error_wangara.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_do.in</affectedPath><affectedPath>input_misc/tuner/error_fire.in</affectedPath><affectedPath>src/error.F90</affectedPath><affectedPath>input_misc/tuner/error_gabls2.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_nd.in</affectedPath><affectedPath>input_misc/tuner/error_ticket_756.in</affectedPath><commitId>7b4081bc1e9df47f4f74472a5f5fe8aa148fc752</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Further tuner updates.  These updates introduce the option to give a minimum value for tuned parameters.  Error checks are included.

See #939.
</comment><date>2021-09-02 19:47:00 -0500</date><id>7b4081bc1e9df47f4f74472a5f5fe8aa148fc752</id><msg>Further tuner updates.  These updates introduce the option to give a minimum value for tuned parameters.  Error checks are included.</msg><path><editType>edit</editType><file>input_misc/tuner/error_all.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_ds.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_rico.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_ticket_756.in</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_atex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_nd.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls2.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_do.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_bomex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_fire.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_wangara.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_lba.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf01.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm_97.in</file></path><path><editType>edit</editType><file>src/error.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls3_night.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_nov11_altocu.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>a5d0b30765e6223e3f8369bce78d513d4bf4ee87</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Removing an old comment
</comment><date>2021-09-02 19:47:00 -0500</date><id>a5d0b30765e6223e3f8369bce78d513d4bf4ee87</id><msg>Removing an old comment</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/README</affectedPath><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><commitId>b26df4032b67b87fa59e706f469b3f6c72b586e9</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updating some comments related to the tuner updates.

See #939.
</comment><date>2021-09-02 19:47:00 -0500</date><id>b26df4032b67b87fa59e706f469b3f6c72b586e9</id><msg>Updating some comments related to the tuner updates.</msg><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/README</affectedPath><commitId>dba1ee7a66804e59bd5df4ecfe6780e09393f416</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Update README
</comment><date>2021-09-02 19:47:00 -0500</date><id>dba1ee7a66804e59bd5df4ecfe6780e09393f416</id><msg>Update README</msg><path><editType>edit</editType><file>input_misc/tuner/README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/error.F90</affectedPath><commitId>6958fdf7eb63f23251745b86ce05fb0e631f6258</commitId><timestamp>1630630020000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Minor updates requested in pull request: renaming a variable and adding some comments.

See #939.
</comment><date>2021-09-02 19:47:00 -0500</date><id>6958fdf7eb63f23251745b86ce05fb0e631f6258</id><msg>Minor updates requested in pull request: renaming a variable and adding some comments.</msg><path><editType>edit</editType><file>src/error.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>b203a412c261873e1cc990dfc5f5317974bdb325</commitId><timestamp>1631320025000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding space to trigger autoupdate. larson-group/sys_admin#755
</comment><date>2021-09-10 19:27:05 -0500</date><id>b203a412c261873e1cc990dfc5f5317974bdb325</id><msg>Adding space to trigger autoupdate. larson-group/sys_admin#755</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>a1a93a83b38823619297e58f525de33b4540fe56</commitId><timestamp>1631562742000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Remove space to trigger autoupdate. larson-group/sys_admin#755
</comment><date>2021-09-13 14:52:22 -0500</date><id>a1a93a83b38823619297e58f525de33b4540fe56</id><msg>Remove space to trigger autoupdate. larson-group/sys_admin#755</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>ca98418450a8dcf207e130b945827370b7f5d23e</commitId><timestamp>1631743991000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add space to trigger nightly tests.  For larson-group/sys_admin#755.
</comment><date>2021-09-15 17:13:11 -0500</date><id>ca98418450a8dcf207e130b945827370b7f5d23e</id><msg>Add space to trigger nightly tests.  For larson-group/sys_admin#755.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/parse_argument_list/stats_script.py</affectedPath><affectedPath>utilities/parse_argument_list/indent_enforcer.py</affectedPath><affectedPath>utilities/parse_argument_list/README</affectedPath><affectedPath>utilities/parse_argument_list/stats_placer.py</affectedPath><affectedPath>utilities/parse_argument_list/gr_replacer.py</affectedPath><commitId>0957eb945c7dcab580d70b5c642e53bfc3438c2f</commitId><timestamp>1631804165000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Adding in helper scripts to replace variables as in ticket #886 and ticket #733.
</comment><date>2021-09-16 09:56:05 -0500</date><id>0957eb945c7dcab580d70b5c642e53bfc3438c2f</id><msg>Adding in helper scripts to replace variables as in ticket #886 and ticket #733.</msg><path><editType>add</editType><file>utilities/parse_argument_list/stats_script.py</file></path><path><editType>add</editType><file>utilities/parse_argument_list/gr_replacer.py</file></path><path><editType>add</editType><file>utilities/parse_argument_list/indent_enforcer.py</file></path><path><editType>add</editType><file>utilities/parse_argument_list/README</file></path><path><editType>add</editType><file>utilities/parse_argument_list/stats_placer.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><commitId>25b614d82d157bfd10dd704f2a70755f9ba7d2dc</commitId><timestamp>1632236698000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add a blurb on plotting CAM output to the pyplotgen README.
</comment><date>2021-09-21 10:04:58 -0500</date><id>25b614d82d157bfd10dd704f2a70755f9ba7d2dc</id><msg>Add a blurb on plotting CAM output to the pyplotgen README.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupSubcolumns.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupWs.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupBaseBudgets.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupLiquidMP.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupCorrelations.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupTaus.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupKKMP.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupSamBudgets.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupBase.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupNondimMoments.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupIceMP.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/Style_definitions.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupSamProfiles.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/Case_definitions.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupScalars.py</affectedPath><affectedPath>postprocessing/pyplotgen/src/VariableGroup.py</affectedPath><affectedPath>postprocessing/pyplotgen/src/CaseGallerySetup.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.py</affectedPath><commitId>511bcf1812444716ac7f7c48788da4726238f4d5</commitId><timestamp>1632334648000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updates to pyplotgen to include LASSO cases.  Currently the WRF benchmark file path is not going to be generally valid.  We will probably want to add the WRF-LASSO benchmark files to the benchmark repo, but they will need some additional processing to get rid of large 3D variables that we don't need, or possibly add some additional variables that we want.

See https://github.com/larson-group/wrf/issues/104.
</comment><date>2021-09-22 13:17:28 -0500</date><id>511bcf1812444716ac7f7c48788da4726238f4d5</id><msg>Updates to pyplotgen to include LASSO cases.  Currently the WRF benchmark file path is not going to be generally valid.  We will probably want to add the WRF-LASSO benchmark files to the benchmark repo, but they will need some additional processing to get rid of large 3D variables that we don't need, or possibly add some additional variables that we want.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupTaus.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupWs.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/Style_definitions.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupNondimMoments.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupScalars.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupKKMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupCorrelations.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupSubcolumns.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/VariableGroup.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBase.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupLiquidMP.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/Case_definitions.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgets.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/CaseGallerySetup.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupIceMP.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupBase.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/Case_definitions.py</affectedPath><commitId>381d439c61bde34082edac74c2a9310534cc5f82</commitId><timestamp>1632334648000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Some updates to the paths for the WRF-LASSO benchmark files, and some minor updates so that a few more variables will show up from both the WRF-CLUBB runs and the WRF-LASSO benchmark runs.
</comment><date>2021-09-22 13:17:28 -0500</date><id>381d439c61bde34082edac74c2a9310534cc5f82</id><msg>Some updates to the paths for the WRF-LASSO benchmark files, and some minor updates so that a few more variables will show up from both the WRF-CLUBB runs and the WRF-LASSO benchmark runs.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBase.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/Case_definitions.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/config/VariableGroupWs.py</affectedPath><commitId>f6afdede0290f311294ea0492d07f56a1ca5364a</commitId><timestamp>1632334648000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Adding wpuiui to VariableGroupWs.py
</comment><date>2021-09-22 13:17:28 -0500</date><id>f6afdede0290f311294ea0492d07f56a1ca5364a</id><msg>Adding wpuiui to VariableGroupWs.py</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupWs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><commitId>74d565b42d5bd3e11962eb26b59aa2bf76e7cb22</commitId><timestamp>1632526019000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am fixing a bug that was introduced in 6b0348e, where the logical
flow was distorted within the trapezoidal rule code.

This change does not affect standard CLUBB, where the trapezoidal
rule is not used by default. However, it is important for CAM-CLUBB.
</comment><date>2021-09-24 18:26:59 -0500</date><id>74d565b42d5bd3e11962eb26b59aa2bf76e7cb22</id><msg>I am fixing a bug that was introduced in 6b0348e, where the logical</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan</absoluteUrl><fullName>72510114+RhodesKeegan</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>24</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/24/</url></nextBuild><previousBuild><number>22</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/branch_clubb_test/22/</url></previousBuild></workflowRun>