TESTcam_scam_gfortran_debug_testBRANCHorigin/clubb_silhs_develStarted by user Gunther HueblerhueblerGunther 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#130130false1303076SUCCESS1727814234936http://carson.math.uwm.edu/jenkins/view/all/job/branch_cam_test/130/bld/configurebld/build-namelistdae6502d255057b071e658d3b2d8c25b83cb23441694015941000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unused code in configure and build-namelist Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-09-06 11:59:01 -0400dae6502d255057b071e658d3b2d8c25b83cb2344Remove unused code in configure and build-namelisteditbld/build-namelisteditbld/configuresrc/chemistry/geoschem/geoschem_history_mod.F90src/chemistry/geoschem/chem_mods.F90src/chemistry/geoschem/chemistry.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/geoschem_emissions_mod.F90e1a6fd2460a6f78dff174379954df78034ed7d6b1694016231000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUse shr_kind_cl in GEOS-Chem character declarations; remove SPMD cpp defs This commit also removes some unused lines of code. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-09-06 12:03:51 -0400e1a6fd2460a6f78dff174379954df78034ed7d6bUse shr_kind_cl in GEOS-Chem character declarations; remove SPMD cpp defseditsrc/chemistry/geoschem/chem_mods.F90editsrc/chemistry/geoschem/geoschem_emissions_mod.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/geoschem/geoschem_history_mod.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F900d2ca48e7927fedc61ca6c0c2c4650db4165ae911694018834000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor set_wavenumber_bands 2023-09-06 12:47:14 -04000d2ca48e7927fedc61ca6c0c2c4650db4165ae91refactor set_wavenumber_bandseditsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90doc/ChangeLogc95209b5dfd690db4d32041616131d8bc676537a1694021135000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate ChangeLog Add tag, date, and regression test results. Imply cam6_3_125 as test baseline by removing reference to cam6_3_111. 2023-09-06 11:25:35 -0600c95209b5dfd690db4d32041616131d8bc676537aUpdate ChangeLogeditdoc/ChangeLogsrc/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F902b3abb82d81b1aa0ff5fedf50193a1a4c4c6456c1694033773000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor rrtmgp_set_state 2023-09-06 16:56:13 -04002b3abb82d81b1aa0ff5fedf50193a1a4c4c6456crefactor rrtmgp_set_stateeditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/radiation.F90src/control/runtime_opts.F90src/chemistry/geoschem/geoschem_history_mod.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/chemistry.F90src/control/cam_comp.F90src/chemistry/geoschem/geoschem_emissions_mod.F908b3dff50761b8c8cae8a8b6e38df1b4c1c5e6bb91694035707000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAlways use ONLY keyword in USE statements This commit also includes reorganizing of all GEOS-Chem interface USE statements so that they are split into three categories: CAM modules, GEOS-Chem interface modules in CAM, and GEOS-Chem modules. They are alphabetized within each section. An extraneous hemco_interface declaration and new line are also removed. 2023-09-06 15:28:27 -06008b3dff50761b8c8cae8a8b6e38df1b4c1c5e6bb9Always use ONLY keyword in USE statementseditsrc/control/runtime_opts.F90editsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/geoschem/geoschem_history_mod.F90editsrc/control/cam_comp.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/geoschem/geoschem_emissions_mod.F90src/physics/rrtmgp/radiation.F90a889343ee9d423b1a70f2b110c8477cde6c019cb1694097966000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor modified_cloud_fraction 2023-09-07 10:46:06 -0400a889343ee9d423b1a70f2b110c8477cde6c019cbrefactor modified_cloud_fractioneditsrc/physics/rrtmgp/radiation.F90src/dynamics/se/dycore/control_mod.F90f2a301d97b3b51e494e76d1ba4fbb5b4f783987e1694098536000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/control_mod.F90 Set default for pgf_formulation Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2023-09-07 08:55:36 -0600f2a301d97b3b51e494e76d1ba4fbb5b4f783987eUpdate src/dynamics/se/dycore/control_mod.F90editsrc/dynamics/se/dycore/control_mod.F90src/physics/rrtmgp/radiation.F904752c0ae278f28271e83e1964d2546af93feb0271694101949000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edubug fix - pmid_day arg should not have levels reversed 2023-09-07 11:52:29 -04004752c0ae278f28271e83e1964d2546af93feb027bug fix - pmid_day arg should not have levels reversededitsrc/physics/rrtmgp/radiation.F90src/chemistry/geoschem/geoschem_diagnostics_mod.F90src/chemistry/geoschem/chemistry.F90src/chemistry/mozart/mo_chem_utls.F90ac9e5471bed4e9a0015ab2b59a51dba5b698bbea1694104277000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.edurename optional arg compare_uppercase; use spmd_utils and mpi_bcast 2023-09-07 10:31:17 -0600ac9e5471bed4e9a0015ab2b59a51dba5b698bbearename optional arg compare_uppercase; use spmd_utils and mpi_bcasteditsrc/chemistry/geoschem/geoschem_diagnostics_mod.F90editsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/mozart/mo_chem_utls.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F903c9ce1423972cce4d223ee04a8d9e069ee2c023d1694126918000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor and bug fix in rad_gas_get_vmr 2023-09-07 18:48:38 -04003c9ce1423972cce4d223ee04a8d9e069ee2c023drefactor and bug fix in rad_gas_get_vmreditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90src/chemistry/modal_aero/modal_aero_data.F90src/chemistry/geoschem/chemistry.F909418375f794170cb6d98947252ebd19db82c2bc31694138556000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange modal aerosol species name retrieval method 2023-09-07 20:02:36 -06009418375f794170cb6d98947252ebd19db82c2bc3Change modal aerosol species name retrieval methodeditsrc/chemistry/geoschem/chemistry.F90editsrc/chemistry/modal_aero/modal_aero_data.F90bld/namelist_files/namelist_definition.xmlsrc/dynamics/se/dycore/prim_advance_mod.F904a404258f78d187cedc68ac44f54eaa0d452cb951694211200000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educode changes from code review 2023-09-08 16:13:20 -06004a404258f78d187cedc68ac44f54eaa0d452cb95code changes from code revieweditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dycore/prim_advance_mod.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90f7e28725897a4575b9069478993f2cd08d9bb9f51694295525000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor rrtmgp_set_aer_sw 2023-09-09 17:38:45 -0400f7e28725897a4575b9069478993f2cd08d9bb9f5refactor rrtmgp_set_aer_sweditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90cime_config/testdefs/testlist_cam.xml26ca7f4a3d4ad730c83d75c84e52c1f0649db95f1694437980000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduAdd comment and wallclock time to new CARMA tests modified: cime_config/testdefs/testlist_cam.xml 2023-09-11 07:13:00 -060026ca7f4a3d4ad730c83d75c84e52c1f0649db95fAdd comment and wallclock time to new CARMA testseditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam/vertical_diffusion.F908baa7c3a1e86e387f0566d38539be9bace05639f1694438143000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/physics/cam/vertical_diffusion.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2023-09-11 07:15:43 -06008baa7c3a1e86e387f0566d38539be9bace05639fUpdate src/physics/cam/vertical_diffusion.F90editsrc/physics/cam/vertical_diffusion.F90bld/namelist_files/namelist_definition.xmlc2d7b36caa7fc1862789f81958b628a236e83ee41694438263000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix namelist definition 2023-09-11 07:17:43 -0600c2d7b36caa7fc1862789f81958b628a236e83ee4fix namelist definitioneditbld/namelist_files/namelist_definition.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cambld/namelist_files/namelist_defaults_cam.xml7f5c1152902b2e04004e2c960f05dd85152186a41694453808000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdates to include spun up waccm IC file and allow default value of se_nsplit 2023-09-11 11:36:48 -06007f5c1152902b2e04004e2c960f05dd85152186a4updates to include spun up waccm IC file and allow default value of se_nspliteditcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cameditbld/namelist_files/namelist_defaults_cam.xmldoc/ChangeLog3f2dde032e56b4e0b4b90e90a4c252249976f9811694461517000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comChangeLog update 2023-09-11 13:45:17 -06003f2dde032e56b4e0b4b90e90a4c252249976f981ChangeLog updateeditdoc/ChangeLogsrc/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F9079196ad0c19946cfd0d54ef0ba9c51510eb2ba4f1694525671000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor sw flux calculation 2023-09-12 09:34:31 -040079196ad0c19946cfd0d54ef0ba9c51510eb2ba4frefactor sw flux calculationeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/radconstants.F90doc/ChangeLog54ba97d721cd330e76d9279bc3071197936cc4491694548462000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate ChangeLog with regression test results 2023-09-12 13:54:22 -060054ba97d721cd330e76d9279bc3071197936cc449update ChangeLog with regression test resultseditdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandscime_config/testdefs/testlist_cam.xmlsrc/physics/cam/radiation_data.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/shell_commandsbld/configurecime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_clmsrc/physics/cam/cloud_diagnostics.F90bld/config_files/definition.xmlcime_config/SystemTests/mgp.pycime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camsrc/physics/cam/microp_driver.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_clmbld/namelist_files/namelist_definition.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsbld/build-namelistcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmsrc/physics/cam/physpkg.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_camsrc/physics/cam/convect_shallow.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/shell_commandssrc/physics/cam/phys_control.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commands1655bebb0f06b6371b521d8f22e8fdf1962d10171694550210000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdded aux_pumas test suite, added first attempt at making pumas a valid configure and namelist option for microphysics. Added a test to make sure pumas and mg3 give the same results and it only passes when pumas is set to mg3 in configure right now. More work to do. 2023-09-12 14:23:30 -06001655bebb0f06b6371b521d8f22e8fdf1962d1017Added aux_pumas test suite, added first attempt at making pumas a valid configure and namelist option for microphysics. Added a test to make sure pumas and mg3 give the same results and it only passes when pumas is set to mg3 in configure right now. More work to do.editbld/namelist_files/namelist_definition.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/shell_commandseditsrc/physics/cam/microp_driver.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_clmdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/shell_commandseditbld/config_files/definition.xmleditbld/configureaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_clmeditbld/build-namelistaddcime_config/SystemTests/mgp.pyeditsrc/physics/cam/phys_control.F90editsrc/physics/cam/physpkg.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_emulated/user_nl_cameditsrc/physics/cam/cloud_diagnostics.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_cameditcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_cameditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/convect_shallow.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_sb2001/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_tau/user_nl_cameditsrc/physics/cam/radiation_data.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90544fdad534f68cca65178bbaf914e010129569291694561349000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix r8 issue in refractive_aerosol_optics_mod 2023-09-12 17:29:09 -0600544fdad534f68cca65178bbaf914e01012956929fix r8 issue in refractive_aerosol_optics_modeditsrc/chemistry/aerosol/refractive_aerosol_optics_mod.F90src/physics/rrtmgp/radiation.F907cd5b1a8b7cf9e8bf6ab1011f0a5a469a7d8f6f71694610435000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor setting tsi to fix bug 2023-09-13 09:07:15 -04007cd5b1a8b7cf9e8bf6ab1011f0a5a469a7d8f6f7refactor setting tsi to fix bugeditsrc/physics/rrtmgp/radiation.F90bld/namelist_files/namelist_defaults_cam.xmlb06cf016b098c5f06bf15d17126082e67e7f4dd01694612017000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduCorrect default IC file for QPWmaC6 on ne5np4 grid modified: bld/namelist_files/namelist_defaults_cam.xml 2023-09-13 07:33:37 -0600b06cf016b098c5f06bf15d17126082e67e7f4dd0Correct default IC file for QPWmaC6 on ne5np4 grideditbld/namelist_files/namelist_defaults_cam.xmldoc/ChangeLog7e9b1c68cce48ba6bec49e4aa0e4764ba722b6db1694617227000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2023-09-13 09:00:27 -06007e9b1c68cce48ba6bec49e4aa0e4764ba722b6dbChangeLog drafteditdoc/ChangeLogsrc/physics/cam_dev/micro_pumas_cam.F903c9ca023bfa625c0bc698a833e44fa43d46a1a311694623646000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAndrew's changes for more output 2023-09-13 10:47:26 -06003c9ca023bfa625c0bc698a833e44fa43d46a1a31Andrew's changes for more outputeditsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam_dev/physpkg.F904645cfea0618c8a0a5dc1213fb7fada4939350f71694623680000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFound one more MG check 2023-09-13 10:48:00 -06004645cfea0618c8a0a5dc1213fb7fada4939350f7Found one more MG checkeditsrc/physics/cam_dev/physpkg.F90doc/ChangeLoge85b90641c7951fc0cc0b74d630df90dfc889d2a1694632812000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-09-13 13:20:12 -0600e85b90641c7951fc0cc0b74d630df90dfc889d2aChangeLog updateeditdoc/ChangeLogdoc/ChangeLoge91b687a2b514d2461d016702314f572a6da2a671694633806000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-09-13 13:36:46 -0600e91b687a2b514d2461d016702314f572a6da2a67ChangeLog updateeditdoc/ChangeLogmodel_flags.F907afb2bd7070e5e83204950c8b94a12b73b8f88fd1694635856000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108) - Added new flags to inut/tunable_parameters_Lscale/configurable_model_flags.in - Changed default setting for l_use_tke_in_wp3_pr_turb_term in model_flags.F90 from false to true 2023-09-13 15:10:56 -05007afb2bd7070e5e83204950c8b94a12b73b8f88fdBIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)editmodel_flags.F90src/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/cloud_rad_props.F90b1806227d680187c7f1d953161bf0df50c4a20721694795611000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumisc cleanup 2023-09-15 12:33:31 -0400b1806227d680187c7f1d953161bf0df50c4a2072misc cleanupeditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/cloud_rad_props.F90editsrc/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmg/cloud_rad_props.F90src/physics/rrtmg/slingo.F90src/physics/rrtmg/oldcloud.F90src/physics/rrtmgp/oldcloud.F90src/physics/cam/ebert_curry.F90src/physics/rrtmgp/cloud_rad_props.F90src/physics/cam/slingo.F90src/physics/rrtmg/ebert_curry.F90src/physics/cam/oldcloud.F90src/physics/rrtmgp/ebert_curry.F90src/physics/cam/cloud_rad_props.F90src/physics/rrtmgp/slingo.F90afbeae33a1af0d5b17c394c734b0c696e823a9831694796707000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumove files shared by rrtmg and rrtmgp to physics/cam 2023-09-15 12:51:47 -0400afbeae33a1af0d5b17c394c734b0c696e823a983move files shared by rrtmg and rrtmgp to physics/camdeletesrc/physics/rrtmgp/oldcloud.F90addsrc/physics/cam/ebert_curry.F90deletesrc/physics/rrtmg/cloud_rad_props.F90addsrc/physics/cam/cloud_rad_props.F90deletesrc/physics/rrtmg/slingo.F90addsrc/physics/cam/slingo.F90deletesrc/physics/rrtmg/ebert_curry.F90addsrc/physics/cam/oldcloud.F90deletesrc/physics/rrtmgp/cloud_rad_props.F90deletesrc/physics/rrtmg/oldcloud.F90deletesrc/physics/rrtmgp/ebert_curry.F90deletesrc/physics/rrtmgp/slingo.F90src/physics/cam_dev/micro_pumas_cam.F90ef2a91ca9317b61d855a7740170f9a2996f1d8891694811304000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall change to get new outputs working with older code 2023-09-15 14:55:04 -0600ef2a91ca9317b61d855a7740170f9a2996f1d889Small change to get new outputs working with older codeeditsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam/slingo.F90src/physics/simple/radconstants.F90src/physics/cam/ebert_curry.F904b1dc77d314600c1eb22099cdec0db695dc17e1b1694993947000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edubugfix for simple models; cleanup in cloud optics code 2023-09-17 19:39:07 -04004b1dc77d314600c1eb22099cdec0db695dc17e1bbugfix for simple models; cleanup in cloud optics codeeditsrc/physics/cam/slingo.F90editsrc/physics/cam/ebert_curry.F90editsrc/physics/simple/radconstants.F90cime_config/testdefs/testlist_cam.xml7dac4af8aba45f87a569b31fc8cbc5d8ed3c7c8d1695077775000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding tests for Derecho as well 2023-09-18 16:56:15 -06007dac4af8aba45f87a569b31fc8cbc5d8ed3c7c8dAdding tests for Derecho as welleditcime_config/testdefs/testlist_cam.xmlstats_variables.F90stats_zm_module.F90advance_clubb_core_module.F905256cf04633fd71551f6bd29ee0632494b611a931695154187000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLikely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109) - Added C6_term and bv_freq fields to all_stats.F90 and standard_stats.F90 - Added new fields to VariableGroupTaus.py in pyplotgen - Added calls to stat_update_var to advance_clubb_core_module.F90 - Modified stats_variables.F90 and stats_zm_module.F90 accordingly 2023-09-19 15:09:47 -05005256cf04633fd71551f6bd29ee0632494b611a93Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)editstats_variables.F90editstats_zm_module.F90editadvance_clubb_core_module.F90src/physics/cam/slingo.F90src/physics/cam/oldcloud.F90src/physics/rrtmgp/radiation.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry.F901a047e0f4eae8341df80097d633c28740aa6ef041695159363000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumore cleanup in cloud optics code 2023-09-19 17:36:03 -04001a047e0f4eae8341df80097d633c28740aa6ef04more cleanup in cloud optics codeeditsrc/physics/cam/oldcloud.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/cam/cloud_rad_props.F90editsrc/physics/cam/ebert_curry.F90editsrc/physics/cam/slingo.F90src/dynamics/fv/dp_coupling.F909b3d553ede7a40eda4b30b0145590e91cc24239b1695226109000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comconvert wet species to dry before calling cam_thermo_dry_air_update 2023-09-20 10:08:29 -06009b3d553ede7a40eda4b30b0145590e91cc24239bconvert wet species to dry before calling cam_thermo_dry_air_updateeditsrc/dynamics/fv/dp_coupling.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90749f90a3c07d95ea5b50b24dd19aaee6d6ee993f1695228866000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor setting cloud_sw object 2023-09-20 12:54:26 -0400749f90a3c07d95ea5b50b24dd19aaee6d6ee993frefactor setting cloud_sw objecteditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90src/dynamics/se/se_single_column_mod.F90src/dynamics/se/stepon.F90src/physics/cam/clubb_intr.F90src/control/ncdio_atm.F90src/control/history_scam.F90src/physics/cam/phys_grid.F90src/control/getinterpnetcdfdata.F90src/dynamics/se/dyn_comp.F90src/cpl/nuopc/atm_comp_nuopc.F90src/infrastructure/phys_grid.F90bld/namelist_files/namelist_definition.xmlsrc/control/scamMod.F90src/physics/cam/chem_surfvals.F90bld/build-namelistcime_config/usermods_dirs/scam_mandatory/shell_commandssrc/physics/cam/physpkg.F90src/dynamics/eul/iop.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/eul/getinterpnetcdfdata.F90src/dynamics/se/dycore/prim_driver_mod.F90src/control/history_defaults.F90src/dynamics/se/dp_coupling.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/check_energy.F90src/cpl/nuopc/atm_stream_ndep.F90src/physics/cam/cam_diagnostics.F90src/utils/cam_grid_support.F90src/dynamics/se/apply_iop_forcing.F903006e9c1a65d0a12f74f07184beddb935a431d8e1695229694000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduse scam update 2023-09-20 11:08:14 -06003006e9c1a65d0a12f74f07184beddb935a431d8ese scam updateeditbld/namelist_files/namelist_definition.xmleditsrc/control/history_scam.F90editsrc/infrastructure/phys_grid.F90editsrc/physics/cam/phys_grid.F90addsrc/control/getinterpnetcdfdata.F90editsrc/control/history_defaults.F90editsrc/physics/cam/cam_diagnostics.F90editsrc/physics/cam/check_energy.F90addsrc/dynamics/se/se_single_column_mod.F90editsrc/utils/cam_grid_support.F90editsrc/physics/cam/chem_surfvals.F90editsrc/cpl/nuopc/atm_stream_ndep.F90editsrc/dynamics/eul/iop.F90editsrc/dynamics/se/dp_coupling.F90editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelisteditsrc/control/ncdio_atm.F90deletesrc/dynamics/eul/getinterpnetcdfdata.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/control/scamMod.F90editsrc/cpl/nuopc/atm_comp_nuopc.F90addsrc/dynamics/se/apply_iop_forcing.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dyn_comp.F90editsrc/physics/cam/physpkg.F90editcime_config/usermods_dirs/scam_mandatory/shell_commandseditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/physics/cam/clubb_intr.F90test/system/test_driver.sh84fa58e7e9d6d5618fdd8d6f331e0d87c5f734941695232518000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduAdd non-zero exit code to check for baselines. 2023-09-20 11:55:18 -060084fa58e7e9d6d5618fdd8d6f331e0d87c5f73494Add non-zero exit code to check for baselines.edittest/system/test_driver.shExternals.cfg5fde6371a62a863a118c327e59bc273b01e752f41695237241000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduBring in test_driver and externals 2023-09-20 13:14:01 -06005fde6371a62a863a118c327e59bc273b01e752f4Bring in test_driver and externalseditExternals.cfgExternals_CAM.cfg91b1959e31c630ebd256f0c58fba4abca795cdba1695243893000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate HEMCO external 2023-09-20 15:04:53 -060091b1959e31c630ebd256f0c58fba4abca795cdbaUpdate HEMCO externaleditExternals_CAM.cfgExternals_CAM.cfgc1f6899f612d5f98a3cfc61f2543238deb441e971695249844000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate Externals to new PUMAS tag 2023-09-20 16:44:04 -0600c1f6899f612d5f98a3cfc61f2543238deb441e97Update Externals to new PUMAS tageditExternals_CAM.cfgtest/system/test_driver.shdbaca4140c020683bf74779e90d481f84f609eae1695250498000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduUse wallclock_limit for derecho walltime. 2023-09-20 16:54:58 -0600dbaca4140c020683bf74779e90d481f84f609eaeUse wallclock_limit for derecho walltime.edittest/system/test_driver.shtest/system/test_driver.sh70108b1e67366a7d4468bead7e48384909a7373b1695250723000http://carson.math.uwm.edu/jenkins/user/fischerfischerfischer@ucar.eduUse wallclock_limit for cheyenne and casper walltime. 2023-09-20 16:58:43 -060070108b1e67366a7d4468bead7e48384909a7373bUse wallclock_limit for cheyenne and casper walltime.edittest/system/test_driver.shtest/system/test_driver.sh37c6f28b9a8a7cf08d98c8ab8f3ae47edb02e5261695317391000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing character 2023-09-21 11:29:51 -060037c6f28b9a8a7cf08d98c8ab8f3ae47edb02e526Add missing characteredittest/system/test_driver.shcime_config/config_tests.xml73cd17fb1c9e2d5ffcc3efb8caff4b8d700d02d01695322705000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdd definition for MGP test 2023-09-21 12:58:25 -060073cd17fb1c9e2d5ffcc3efb8caff4b8d700d02d0Add definition for MGP testeditcime_config/config_tests.xmlExternals_CAM.cfgce5989c6005bec71d0037fbc02a2e7d22c9910b91695330946000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix typo in HEMCO tagname 2023-09-21 15:15:46 -0600ce5989c6005bec71d0037fbc02a2e7d22c9910b9Fix typo in HEMCO tagnameeditExternals_CAM.cfgtest/system/test_driver.sh48199e4d411474858be6f7342c5aa9a640ea3f621695333076000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove python from derecho submits 2023-09-21 15:51:16 -060048199e4d411474858be6f7342c5aa9a640ea3f62Remove python from derecho submitsedittest/system/test_driver.shsrc/control/cam_history.F90src/control/cam_history_support.F90src/utils/cam_grid_support.F90src/control/sat_hist.F90src/control/filenames.F908d0754e79f07a61bdff8506fea60805e16eee3091695365690000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduseparate accumulated and instantaneous fields 2023-09-22 00:54:50 -06008d0754e79f07a61bdff8506fea60805e16eee309separate accumulated and instantaneous fieldseditsrc/utils/cam_grid_support.F90editsrc/control/cam_history_support.F90editsrc/control/sat_hist.F90editsrc/control/cam_history.F90editsrc/control/filenames.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F904d069dc67f086f08da08482502c75481432212ca1695394004000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove old cloud optics; refactor setting cloud_sw & aer_sw objects 2023-09-22 10:46:44 -04004d069dc67f086f08da08482502c75481432212caremove old cloud optics; refactor setting cloud_sw & aer_sw objectseditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90doc/ChangeLoga1474d95162d7bc3a0c1d4012d6919b3db18fbe51695405127000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduPreliminary ChangeLog 2023-09-22 11:52:07 -0600a1474d95162d7bc3a0c1d4012d6919b3db18fbe5Preliminary ChangeLogeditdoc/ChangeLogsrc/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F90a3c5a99721ca66e66dd064a94abdc9e6b89e9e751695406736000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bugs. 2023-09-22 13:18:56 -0500a3c5a99721ca66e66dd064a94abdc9e6b89e9e75Fixing bugs.editsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_intr.F90bld/namelist_files/namelist_definition.xmlc7b9a2cbd9313b14464a82438b850441fd3741b71695413183000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix issue #690 2023-09-22 14:06:23 -0600c7b9a2cbd9313b14464a82438b850441fd3741b7fix issue #690editbld/namelist_files/namelist_definition.xmlmixing_length.F90stats_zm_module.F90stats_variables.F90advance_clubb_core_module.F900735b8dca68da8eec17c24fca269223d8756e97a1695421268000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChanged sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110) BIT_CHANGING! Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 Changes in input/stats/all_stats.in, src/CLUBB_core/advance_clubb_core_module.F90, src/CLUBB_core/mixing_length.F90, src/CLUBB_core/stats_variables.F90, and src/CLUBB_core/stats_zm_module.F90 Ri_zm was added to input/stats/standard_stats.in 2023-09-22 17:21:08 -05000735b8dca68da8eec17c24fca269223d8756e97aChanged sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)editstats_zm_module.F90editstats_variables.F90editadvance_clubb_core_module.F90editmixing_length.F90stats_zm_module.F90stats_variables.F90advance_helper_module.F9062e535382820e1ebdd77dbb79de655e217e552d91695428333000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111) This commit is BIT_CHANGING because: 1. the output field Richardson_num was removed. 2. Since the flag l_use_shear_turb_freq_sqd was removed, the variable shear_sqd is now always written to disk. That means previously, the outputted field shear_sqd was 0 everywhere whereas now it is not anymore. The calculation of shear_sqd within CLUBB did not change! - Removed mentions in input/stats/all_stats.in and standards_stats.in - Removed mentions in src/CLUBB_core/stats_variables.F90 and stats_zm_module.F90 - In src/CLUBB_core/advance_helper_module.F90 removed mentions to [i]Richardson_num[_clipped], as well as l_use_shear_turb_freq_sqd, l_Richardson_vert_avg, and turb_freq_sqd sinc those are only used for calculation of Richardson_num. 2023-09-22 19:18:53 -050062e535382820e1ebdd77dbb79de655e217e552d9BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)editadvance_helper_module.F90editstats_zm_module.F90editstats_variables.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/se_single_column_mod.F90src/dynamics/se/stepon.F90src/dynamics/se/apply_iop_forcing.F9055ab657eb6a8eba7e1645cc0fd56c1b02094586c1695581575000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edubfb mods 2023-09-24 12:52:55 -060055ab657eb6a8eba7e1645cc0fd56c1b02094586cbfb modseditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/se_single_column_mod.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/apply_iop_forcing.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90b7f0039da88eac6cbdaf1483be5bee0cced067601695657661000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor SW treatment of no daylight columns in chunk 2023-09-25 12:01:01 -0400b7f0039da88eac6cbdaf1483be5bee0cced06760refactor SW treatment of no daylight columns in chunkeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90src/dynamics/fv/dp_coupling.F90ee679ef9ef2ae878dd49c9bd6998281002d289b41695748908000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove characters in comment 2023-09-26 11:21:48 -0600ee679ef9ef2ae878dd49c9bd6998281002d289b4remove characters in commenteditsrc/dynamics/fv/dp_coupling.F90bld/build-namelistsrc/physics/spcam/crmclouds_camaerosols.F90src/physics/cam/zm_microphysics.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90bld/configurebld/namelist_files/namelist_definition.xmlsrc/physics/cam/zm_conv.F90Externals_CAM.cfgsrc/physics/cam/convect_shallow.F90src/physics/cam/macrop_driver.F90src/physics/cam/zm_conv_intr.F908f232dc6a5ba8cc9be7d7a0c0dede0cae10081621695771695000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove ZM microphysics and cleanup for CCPP conversion 2023-09-26 17:41:35 -06008f232dc6a5ba8cc9be7d7a0c0dede0cae1008162Remove ZM microphysics and cleanup for CCPP conversioneditExternals_CAM.cfgdeletesrc/physics/cam/zm_microphysics.F90editbld/build-namelisteditbld/namelist_files/namelist_definition.xmleditsrc/physics/spcam/crmclouds_camaerosols.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90editsrc/physics/cam/macrop_driver.F90deletesrc/physics/cam/zm_conv.F90editbld/configurecime_config/buildlib5af0cde5b9813a62f1853a4846bb1c28260b3eef1695829495000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate buildlib to allow cesm to build fms for shared use. Previously cam was responsible for building libfms 2023-09-27 09:44:55 -06005af0cde5b9813a62f1853a4846bb1c28260b3eefupdate buildlib to allow cesm to build fms for shared use. Previously cam was responsible for building libfmseditcime_config/buildlibdoc/ChangeLogcime_config/buildlib74484a948d4afae82b87b4cc8228246a355bb2a51695830708000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduminor text updates 2023-09-27 10:05:08 -060074484a948d4afae82b87b4cc8228246a355bb2a5minor text updateseditcime_config/buildlibeditdoc/ChangeLogcime_config/buildlibc80928df23743d198d0881a5199886e1405bc1901695837267000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfix err msg wording for missing libfms library. 2023-09-27 11:54:27 -0600c80928df23743d198d0881a5199886e1405bc190fix err msg wording for missing libfms library.editcime_config/buildlibbld/configure0c2a5c5302a3844647396eae4278b92b125373ae1695845899000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall perl bug fix in configure 2023-09-27 14:18:19 -06000c2a5c5302a3844647396eae4278b92b125373aeSmall perl bug fix in configureeditbld/configurecime_config/buildlib2d6fbd75c3497bd0bb0efbe9ccb660a72e7f6af41695846912000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing if statement 2023-09-27 14:35:12 -06002d6fbd75c3497bd0bb0efbe9ccb660a72e7f6af4Add missing if statementeditcime_config/buildlibcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_clmcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_cpl5d6c51f1c03f1619d16b7d323dc6c2d2ef3965ba1695855175000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove test which tested zmconv_micro 2023-09-27 16:52:55 -06005d6c51f1c03f1619d16b7d323dc6c2d2ef3965baRemove test which tested zmconv_microdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_clmeditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq3s_convmic/user_nl_cplcime_config/buildlibb6c1e7a0f3ee8e75e4b81a99b18bfcc362122acf1695923339000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix for ERP test of fvcubed dycore 2023-09-28 11:48:59 -0600b6c1e7a0f3ee8e75e4b81a99b18bfcc362122acffix for ERP test of fvcubed dycoreeditcime_config/buildlibsrc/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/rrtmgp_driver.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmgp/rrtmgp_inputs.F90b499cc41773f8845f700f68cf2389d58a44846971695930888000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor LW cloud and aerosol optics, flux calc 2023-09-28 15:54:48 -0400b499cc41773f8845f700f68cf2389d58a4484697refactor LW cloud and aerosol optics, flux calcdeletesrc/physics/rrtmgp/rrtmgp_driver.F90editsrc/physics/rrtmgp/mcica_subcol_gen.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F9049726ef7faba6cc63f255342855ac5732e5d79c71695942674000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumisc cleanup; restore putting Q*dp in pbuf for energy conservation 2023-09-28 19:11:14 -040049726ef7faba6cc63f255342855ac5732e5d79c7misc cleanup; restore putting Q*dp in pbuf for energy conservationeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F9074bce491fec934f14d09b6d1e11d24e2eeeb251a1696011776000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove some debug output; add error check routine 2023-09-29 14:22:56 -040074bce491fec934f14d09b6d1e11d24e2eeeb251aremove some debug output; add error check routineeditsrc/physics/rrtmgp/radiation.F90src/utils/ccpp_constituent_prop_mod.F90src/physics/simple/kessler_cam.F90Externals_CAM.cfgsrc/physics/simple/physpkg.F90src/physics/simple/held_suarez_cam.F90src/physics/cam/ref_pres.F9022d781423baf9c36f4e4286474b056c99e8a0d351696016510000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd code mods needed to work with the latest version of the 'atmospheric_physics' external. 2023-09-29 13:41:50 -060022d781423baf9c36f4e4286474b056c99e8a0d35Add code mods needed to work with the latest version of the 'atmospheric_physics' external.editsrc/physics/simple/physpkg.F90addsrc/utils/ccpp_constituent_prop_mod.F90editsrc/physics/simple/kessler_cam.F90editExternals_CAM.cfgeditsrc/physics/cam/ref_pres.F90editsrc/physics/simple/held_suarez_cam.F90src/control/runtime_opts.F90src/chemistry/mozart/mo_chem_utls.F90src/chemistry/mozart/short_lived_species.F90d37e70a4486796ce9f1f70ad4f1022b5a0670ccb1696016633000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUnused code deletion and update setting short-lived species fieldnames Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-09-29 13:43:53 -0600d37e70a4486796ce9f1f70ad4f1022b5a0670ccbUnused code deletion and update setting short-lived species fieldnameseditsrc/chemistry/mozart/mo_chem_utls.F90editsrc/chemistry/mozart/short_lived_species.F90editsrc/control/runtime_opts.F90src/physics/cam_dev/physpkg.F90src/utils/ccpp_constituent_prop_mod.F90src/physics/simple/physpkg.F90src/physics/cam/physpkg.F90src/physics/cam/geopotential.F909b1a538be6d03df47379b3878379296d0024fae11696016941000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduReplace 'geopotential_t' calculation with CCPP version for SE and MPAS. 2023-09-29 13:49:01 -06009b1a538be6d03df47379b3878379296d0024fae1Replace 'geopotential_t' calculation with CCPP version for SE and MPAS.editsrc/physics/cam/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editsrc/physics/simple/physpkg.F90editsrc/utils/ccpp_constituent_prop_mod.F90editsrc/physics/cam/geopotential.F90src/physics/cam/geopotential.F90src/utils/ccpp_constituent_prop_mod.F90675b6e59575d4f827fa3279f9a73b5e458dc6e3e1696017012000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix bugs needed to work with CCPP geopotential_t routine. 2023-09-29 13:50:12 -0600675b6e59575d4f827fa3279f9a73b5e458dc6e3eFix bugs needed to work with CCPP geopotential_t routine.editsrc/physics/cam/geopotential.F90editsrc/utils/ccpp_constituent_prop_mod.F90src/utils/ccpp_constituent_prop_mod.F90628e516d858dd939ae748e0b0ad0c230a9d166dc1696017014000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd 'water_species' property to fake const object. 2023-09-29 13:50:14 -0600628e516d858dd939ae748e0b0ad0c230a9d166dcAdd 'water_species' property to fake const object.editsrc/utils/ccpp_constituent_prop_mod.F90src/dynamics/se/dp_coupling.F9015e603da58e2bcd306bc07608eaa1d0651d4cdab1696017014000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduReplace SE dry static energy calculation with equivalent CCPP scheme. 2023-09-29 13:50:14 -060015e603da58e2bcd306bc07608eaa1d0651d4cdabReplace SE dry static energy calculation with equivalent CCPP scheme.editsrc/dynamics/se/dp_coupling.F90cime_config_cesm_machines_files/config_machines.xmlrun_scripts/set_up_cam_coarse_res.pycime_config_cesm_machines_files/intel_nelson.cmakerun_scripts/run_scam.bashcime_config_cesm_machines_files/gnu_nelson.cmakerun_scripts/run_cesm_uwm_coarse_res.shcime_config_cesm_machines_files/config_compilers.xml698bfb952b6427626ab0f0fd541644618f4f56021696018224000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding/modifying scripts to make things work. Also a good time to include BIT_CHANGING. 2023-09-29 15:10:24 -0500698bfb952b6427626ab0f0fd541644618f4f5602Adding/modifying scripts to make things work. Also a good time to include BIT_CHANGING.editrun_scripts/run_cesm_uwm_coarse_res.sheditrun_scripts/run_scam.bashaddcime_config_cesm_machines_files/gnu_nelson.cmakeaddcime_config_cesm_machines_files/intel_nelson.cmakeeditrun_scripts/set_up_cam_coarse_res.pydeletecime_config_cesm_machines_files/config_compilers.xmleditcime_config_cesm_machines_files/config_machines.xmljenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile4d480d2b0ffc2fea59f3b09ab81a1208662b79ba1696018848000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate to jenkinsfiles 2023-09-29 15:20:48 -05004d480d2b0ffc2fea59f3b09ab81a1208662b79baUpdate to jenkinsfileseditjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfileeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile446657ebaebbec1e2efa6e9a6c88aba37a01d1881696018961000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate to jenkinsfiles again 2023-09-29 15:22:41 -0500446657ebaebbec1e2efa6e9a6c88aba37a01d188Update to jenkinsfiles againeditjenkins_tests/cam_scam_gfortran_test/Jenkinsfileeditjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfileeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile2f8daff6fe68a73520bb4f95867dc562023711bd1696019035000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate to jenkinsfiles again 2023-09-29 15:23:55 -05002f8daff6fe68a73520bb4f95867dc562023711bdUpdate to jenkinsfiles againeditjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_gfortran_test/Jenkinsfileeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilerun_scripts/run_scam.bashfc2ef6ac2da046e3abcb24b24d7b73786acd78481696019541000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall updates 2023-09-29 15:32:21 -0500fc2ef6ac2da046e3abcb24b24d7b73786acd7848Small updateseditrun_scripts/run_scam.basheditjenkins_tests/cam_scam_ifort_ncar_debug_test/JenkinsfileExternals.cfgbld/configurebld/namelist_files/namelist_defaults_cam.xmlcime_config/config_compsets.xmlfd265ed20d1b95b1087e972dad9ab84d6fbdd3d31696019571000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduse scm updates to cmeps cdeps externals 2023-09-29 14:32:51 -0600fd265ed20d1b95b1087e972dad9ab84d6fbdd3d3se scm updates to cmeps cdeps externalseditcime_config/config_compsets.xmleditExternals.cfgeditbld/namelist_files/namelist_defaults_cam.xmleditbld/configurecime_config/buildlib769f2d03aacc8cd4a292f17bd90f43dc80b4321f1696022347000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comprint out missing file 2023-09-29 15:19:07 -0600769f2d03aacc8cd4a292f17bd90f43dc80b4321fprint out missing fileeditcime_config/buildlibrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shaf26a1e7043039165c090c95676d48e6d2f726b51696024246000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdates to run script 2023-09-29 16:50:46 -0500af26a1e7043039165c090c95676d48e6d2f726b5Updates to run scripteditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shbld/configureExternals_CAM.cfg.gitignorebld/build-namelistbld/namelist_files/namelist_defaults_cam.xmlddda4164a241ba2cd2651c0a9496fc66175a31781696034648000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate build for changes to rte-rrtmgp develop branch 2023-09-29 20:44:08 -0400ddda4164a241ba2cd2651c0a9496fc66175a3178update build for changes to rte-rrtmgp develop branchedit.gitignoreeditbld/build-namelisteditbld/configureeditExternals_CAM.cfgeditbld/namelist_files/namelist_defaults_cam.xmlsrc/utils/ccpp_constituent_prop_mod.F90src/dynamics/se/dp_coupling.F90dd8b5368b33be31858b0dbb923bda58ead8d709e1696262560000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix bugs found during manual testing. 2023-10-02 10:02:40 -0600dd8b5368b33be31858b0dbb923bda58ead8d709eFix bugs found during manual testing.editsrc/dynamics/se/dp_coupling.F90editsrc/utils/ccpp_constituent_prop_mod.F90run_scripts/set_up_cam_coarse_res.pyf23b9b84346820c3ed50268666778a4810a5c9cb1696271284000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking setup script copy intel_nelson.cmake properly 2023-10-02 13:28:04 -0500f23b9b84346820c3ed50268666778a4810a5c9cbMaking setup script copy intel_nelson.cmake properlyeditrun_scripts/set_up_cam_coarse_res.pyrun_scripts/run_scam.bash7feb8f539398d5ddfa3e0c6ebba294b699a2b2461696271805000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding default caseroot replace in create_newcase 2023-10-02 13:36:45 -05007feb8f539398d5ddfa3e0c6ebba294b699a2b246Adding default caseroot replace in create_newcaseeditrun_scripts/run_scam.bashrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh7f9689146f7f98c2b6b3734f456e41c02620f3681696280052000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSetting r8029 flag corrently (according to settings in clubb/input/tunable_parameters_compatible_r8029) 2023-10-02 15:54:12 -05007f9689146f7f98c2b6b3734f456e41c02620f368Setting r8029 flag corrently (according to settings in clubb/input/tunable_parameters_compatible_r8029)editrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh67b1676518c6424c37e11eee2edf0ccdb46943831696285525000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSpace to create new commit 2023-10-02 17:25:25 -050067b1676518c6424c37e11eee2edf0ccdb4694383Space to create new commiteditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shsrc/control/cam_history.F90src/utils/cam_grid_support.F906191558bc55d5241f730488eecb6412d63eab5341696286647000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix issue with multiple grids with the same attribute(s) 2023-10-02 16:44:07 -06006191558bc55d5241f730488eecb6412d63eab534fix issue with multiple grids with the same attribute(s)editsrc/control/cam_history.F90editsrc/utils/cam_grid_support.F90run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh4ac81c264bb4ab44c15285a737cf15438dbf60161696358210000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging the start date and turning debug flags on in r8029 coarse res run. 2023-10-03 13:36:50 -05004ac81c264bb4ab44c15285a737cf15438dbf6016Changing the start date and turning debug flags on in r8029 coarse res run.editrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh1ff69dd5258ac7c699899264d7da2be09aa62d841696358245000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSpace to create new commit 2023-10-03 13:37:25 -05001ff69dd5258ac7c699899264d7da2be09aa62d84Space to create new commiteditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shrun_scripts/set_up_cam_coarse_res.py3b851f28ef71aaba1f78f590d65c920d6a9628b11696361174000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking setup script setup the r8029 flag version as well. 2023-10-03 14:26:14 -05003b851f28ef71aaba1f78f590d65c920d6a9628b1Making setup script setup the r8029 flag version as well.editrun_scripts/set_up_cam_coarse_res.pyrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh2654651b8a1d6a1e7b25c3d030533e2557869d6f1696361308000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSpace to create new commit 2023-10-03 14:28:28 -05002654651b8a1d6a1e7b25c3d030533e2557869d6fSpace to create new commiteditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shsrc/control/cam_history.F90src/utils/cam_grid_support.F9096ea50241ec08f01af6454688a23647165750e971696395019000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix bug in lat lon coords, append file type to user-supplied filespec 2023-10-03 22:50:19 -060096ea50241ec08f01af6454688a23647165750e97fix bug in lat lon coords, append file type to user-supplied filespeceditsrc/utils/cam_grid_support.F90editsrc/control/cam_history.F90doc/ChangeLog212a84249d07f87231c4b3735bb1764615ab479f1696434573000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdated ChangeLog for cam6_3_129 2023-10-04 09:49:33 -0600212a84249d07f87231c4b3735bb1764615ab479fUpdated ChangeLog for cam6_3_129editdoc/ChangeLogcime_config/cam.case_setupd43c4e840ababc03928976e22b774c3225de01e51696448807000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd script to copy GEOS-Chem config files during case setup Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-04 13:46:47 -0600d43c4e840ababc03928976e22b774c3225de01e5Add script to copy GEOS-Chem config files during case setupaddcime_config/cam.case_setupbld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml675afd0aa21b328d12aef5cd085142000c66b4e11696527847000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate deposition input file path used for GEOS-Chem Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-05 11:44:07 -0600675afd0aa21b328d12aef5cd085142000c66b4e1Update deposition input file path used for GEOS-Chemeditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmlcime_config/buildnml4e552bbf4c8bfe7f82d069973ba46a64ea61dc451696527877000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduCopy GEOS-Chem configuration files from caseroot to run directory Previously files were copied from camconf. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-05 11:44:37 -06004e552bbf4c8bfe7f82d069973ba46a64ea61dc45Copy GEOS-Chem configuration files from caseroot to run directoryeditcime_config/buildnmlsrc/physics/cam_dev/micro_pumas_cam.F909344b93f53d0ab0fa5b5bb01d170043bf9d387171696544928000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding new diag history fields and updating some diag names 2023-10-05 16:28:48 -06009344b93f53d0ab0fa5b5bb01d170043bf9d38717Adding new diag history fields and updating some diag nameseditsrc/physics/cam_dev/micro_pumas_cam.F90Externals_CAM.cfg98b1883bfdb88e6478edeecf2bce6cc29597d18f1696545537000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate Externals for new new pumas tag 2023-10-05 16:38:57 -060098b1883bfdb88e6478edeecf2bce6cc29597d18fUpdate Externals for new new pumas tageditExternals_CAM.cfgtest/system/archive_baseline.sh72027cdf25510e08354287168ac571a8291ad1f11696555617000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfixes issue #893 to archive derecho baselines - missed addition from last PR 2023-10-05 19:26:57 -060072027cdf25510e08354287168ac571a8291ad1f1fixes issue #893 to archive derecho baselines - missed addition from last PRedittest/system/archive_baseline.shsrc/utils/ccpp_kinds.F90src/physics/cam/geopotential.F90src/utils/cam_ccpp/ccpp_kinds.F90src/dynamics/se/dp_coupling.F90bld/configuresrc/utils/ccpp_constituent_prop_mod.F90src/utils/cam_ccpp/ccpp_constituent_prop_mod.F9081694866c4d923d2a143ade0760ac2c41f06367c1696609561000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduCheryl code review updates. 2023-10-06 10:26:01 -060081694866c4d923d2a143ade0760ac2c41f06367cCheryl code review updates.addsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90addsrc/utils/cam_ccpp/ccpp_kinds.F90editbld/configureeditsrc/dynamics/se/dp_coupling.F90deletesrc/utils/ccpp_kinds.F90deletesrc/utils/ccpp_constituent_prop_mod.F90editsrc/physics/cam/geopotential.F90doc/ChangeLog789d93a935f0f1f1c3fd73d1e6d97b19f43bfa391696614822000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comAdd Changelog 2023-10-06 11:53:42 -0600789d93a935f0f1f1c3fd73d1e6d97b19f43bfa39Add Changelogeditdoc/ChangeLogsrc/dynamics/fv/dp_coupling.F90224309067eeff34eec32bf75af97c39f200d5e5a1696615018000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comcorrect spelling error 2023-10-06 11:56:58 -0600224309067eeff34eec32bf75af97c39f200d5e5acorrect spelling erroreditsrc/dynamics/fv/dp_coupling.F90jenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfiled9aada9c195217c6f610cdd705c3a317ba27ab9a1696626524000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe ERP test now builds cprnc itself. 2023-10-06 16:08:44 -0500d9aada9c195217c6f610cdd705c3a317ba27ab9aThe ERP test now builds cprnc itself.editjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilesrc/control/cam_history.F90cime_config/testdefs/testlist_cam.xmlsrc/dynamics/se/dycore/global_norms_mod.F90cime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xmlsrc/ionosphere/waccmx/edyn_init.F90bld/namelist_files/namelist_definition.xmlsrc/ionosphere/waccmx/edynamo.F90src/dynamics/se/dycore/prim_advance_mod.F90src/physics/cam/vertical_diffusion.F90src/ionosphere/waccmx/ionosphere_interface.F90772d8809b70acfc8dd20d80ccf9e246eba0171b41696627923000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumisc updates modified: bld/namelist_files/namelist_defaults_cam.xml modified: bld/namelist_files/namelist_definition.xml modified: cime_config/config_pes.xml modified: cime_config/testdefs/testlist_cam.xml modified: src/control/cam_history.F90 modified: src/dynamics/se/dycore/global_norms_mod.F90 modified: src/dynamics/se/dycore/prim_advance_mod.F90 modified: src/ionosphere/waccmx/edyn_init.F90 modified: src/ionosphere/waccmx/edynamo.F90 modified: src/ionosphere/waccmx/ionosphere_interface.F90 modified: src/physics/cam/vertical_diffusion.F90 2023-10-06 15:32:03 -0600772d8809b70acfc8dd20d80ccf9e246eba0171b4misc updateseditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/ionosphere/waccmx/edynamo.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam/vertical_diffusion.F90editsrc/control/cam_history.F90editsrc/ionosphere/waccmx/edyn_init.F90editsrc/ionosphere/waccmx/ionosphere_interface.F90editbld/namelist_files/namelist_defaults_cam.xmleditcime_config/config_pes.xmljenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfile9f7d3fa72c8761cd00e92e644792c038c8ba7c611696628969000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding path to find nc-config 2023-10-06 16:49:29 -05009f7d3fa72c8761cd00e92e644792c038c8ba7c61Adding path to find nc-configeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilecab3cb9aa9bb39df4709f12ed4393e685dbde2071696629700000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduJenkins script update 2023-10-06 17:01:40 -0500cab3cb9aa9bb39df4709f12ed4393e685dbde207Jenkins script updateeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfiled3e893d1b661af0d5ed975be6620716d7f1aae171696630773000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing accidental delete 2023-10-06 17:19:33 -0500d3e893d1b661af0d5ed975be6620716d7f1aae17Fixing accidental deleteeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilesrc/physics/rrtmgp/rrtmgp_inputs.F90Externals.cfgsrc/physics/rrtmgp/radiation.F900a6e8a5dfa7dbab274c15f6341eece1b79a4299c1696634217000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove null() init in pointer declarations for thread safety 2023-10-06 19:16:57 -04000a6e8a5dfa7dbab274c15f6341eece1b79a4299cremove null() init in pointer declarations for thread safetyeditsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmgp/rrtmgp_inputs.F90editExternals.cfgcime_config/testdefs/testlist_cam.xmlf63a926335fbc1ae3456c3ebbe801f83843ff1711696863684000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurevert derecho changes to testlist_cam.xml 2023-10-09 09:01:24 -0600f63a926335fbc1ae3456c3ebbe801f83843ff171revert derecho changes to testlist_cam.xmleditcime_config/testdefs/testlist_cam.xmlsrc/ionosphere/waccmx/ionosphere_interface.F900c4850459cd682636e04f400f3c1ffb702cc25d51696866359000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse rga rather modified: src/ionosphere/waccmx/ionosphere_interface.F90 2023-10-09 09:45:59 -06000c4850459cd682636e04f400f3c1ffb702cc25d5use rga rathereditsrc/ionosphere/waccmx/ionosphere_interface.F90src/dynamics/se/dycore/prim_advance_mod.F90bba5775c5475eee319dec09f634070f015fb14bf1696889154000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude option 3 for pgf_formulation error message modified: src/dynamics/se/dycore/prim_advance_mod.F90 2023-10-09 16:05:54 -0600bba5775c5475eee319dec09f634070f015fb14bfinclude option 3 for pgf_formulation error messageeditsrc/dynamics/se/dycore/prim_advance_mod.F90bld/namelist_files/namelist_defaults_cam.xmlbld/build-namelistf4ec0be1a58040df5eda53c8d0aef691397f9cf41696966907000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.edunamelist changes to match run 51 2023-10-10 13:41:47 -0600f4ec0be1a58040df5eda53c8d0aef691397f9cf4namelist changes to match run 51editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelistsrc/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xmlbld/build-namelistbld/namelist_files/namelist_defaults_cam.xml221dc72c6d97d3fdbb970a5cd8216bb936a006b11696972015000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comcloud ice fraction changes for cam_dev 2023-10-10 15:06:55 -0600221dc72c6d97d3fdbb970a5cd8216bb936a006b1cloud ice fraction changes for cam_deveditbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/cldfrc2m.F90editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelistbld/namelist_files/namelist_definition.xmlbld/build-namelistsrc/physics/cam_dev/micro_pumas_cam.F90bld/namelist_files/namelist_defaults_cam.xml7b34f391c3807a43478c7db16493a2fd2698cdac1697048371000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAdding micro_mg_vtrms namelist for ppe 2023-10-11 12:19:31 -06007b34f391c3807a43478c7db16493a2fd2698cdacAdding micro_mg_vtrms namelist for ppeeditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90editbld/namelist_files/namelist_definition.xmlrun_scripts/run_scam.basha9b3c322d65ee2f3351a84e841c2465d7499cec31697054559000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding flags back in, they just needed a little name change to match the namelist definition. 2023-10-11 15:02:39 -0500a9b3c322d65ee2f3351a84e841c2465d7499cec3Adding flags back in, they just needed a little name change to match the namelist definition.editrun_scripts/run_scam.bashExternals_CAM.cfg7d5185a62f1b1d6fe309a3e4b22aa45e5b63b76f1697067611000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate externals to point to pumas tag v1.34 2023-10-11 17:40:11 -06007d5185a62f1b1d6fe309a3e4b22aa45e5b63b76fUpdate externals to point to pumas tag v1.34editExternals_CAM.cfgsrc/control/cam_history.F90cad3879f6dd62fa41b75c695586da126231d7d1a1697070007000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix restarts 2023-10-11 18:20:07 -0600cad3879f6dd62fa41b75c695586da126231d7d1afix restartseditsrc/control/cam_history.F90src/control/cam_history.F90cime_config/SystemTests/sct.py7349d16ea8d4956305494d6401469474e4d31afe1697092965000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduanother restart bug; update sct tests to reference new filename 2023-10-12 00:42:45 -06007349d16ea8d4956305494d6401469474e4d31afeanother restart bug; update sct tests to reference new filenameeditsrc/control/cam_history.F90editcime_config/SystemTests/sct.pybld/namelist_files/namelist_definition.xmlsrc/physics/cam/microp_aero.F90bld/build-namelistsrc/physics/cam/ndrop.F90bld/namelist_files/namelist_defaults_cam.xmldd69c5d6e410ab26538a6b496249dd1677a703ac1697129211000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comadded namelists for wsub_min_asf, modified namelist defaults to reflect latest tunings 2023-10-12 10:46:51 -0600dd69c5d6e410ab26538a6b496249dd1677a703acadded namelists for wsub_min_asf, modified namelist defaults to reflect latest tuningseditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/microp_aero.F90editbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/ndrop.F90editbld/build-namelistmixing_length.F90parameters_tunable.F90parameter_indices.F90clubb_api_module.F904263da9f7ae792444654c9d5acefb27ba5db0e061697137474000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTunable Richardson number exponent - CLUBB ticket #1102 (#1114) BIT_CHANGING! Added the exponent to the Richardson number in the calculation of the invrs_tau_wpxp threshold term in src/CLUBB_core/mixing_length.F90 to the list of tunable parameters. This is bit changing due to the difference in Fortran between taking the sqrt and the .5th power. 2023-10-12 14:04:34 -05004263da9f7ae792444654c9d5acefb27ba5db0e06Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)editmixing_length.F90editparameter_indices.F90editclubb_api_module.F90editparameters_tunable.F90src/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xmlbld/build-namelistbld/namelist_files/namelist_defaults_cam.xml84a256d103497db7c73fd20a035a9d8c8f6274a01697143884000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comswap cam_dev conditional for a new namelist, remove se gamma namelist default 2023-10-12 14:51:24 -060084a256d103497db7c73fd20a035a9d8c8f6274a0swap cam_dev conditional for a new namelist, remove se gamma namelist defaulteditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelisteditsrc/physics/cam/cldfrc2m.F90src/control/cam_history.F90cime_config/SystemTests/sct.py0183095b21cb04a92034338f649813b5a76bc6581697146384000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix for sct tests and fix for restart tests that have only one type of history file 2023-10-12 15:33:04 -06000183095b21cb04a92034338f649813b5a76bc658fix for sct tests and fix for restart tests that have only one type of history fileeditcime_config/SystemTests/sct.pyeditsrc/control/cam_history.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandssrc/physics/cam_dev/physpkg.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmsrc/physics/cam/physpkg.F90src/physics/cam/radiation_data.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camsrc/physics/cam/convect_shallow.F90src/physics/cam/cloud_diagnostics.F90src/physics/cam/phys_control.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camsrc/physics/cam/microp_driver.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsd11107652e94328a03a89ae222ae2d17782e48531697149625000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduReverting changes to support pumas named microphysics and adding back in tests that I thought were a mistake but definately werent 2023-10-12 16:27:05 -0600d11107652e94328a03a89ae222ae2d17782e4853Reverting changes to support pumas named microphysics and adding back in tests that I thought were a mistake but definately werenteditsrc/physics/cam/radiation_data.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmeditsrc/physics/cam/microp_driver.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clmeditsrc/physics/cam/physpkg.F90editsrc/physics/cam/cloud_diagnostics.F90editsrc/physics/cam_dev/physpkg.F90editsrc/physics/cam/phys_control.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_cameditsrc/physics/cam/convect_shallow.F90addcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsbld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/build-namelist8a59bd7c1be85c6414612f7a74f3f9057a747e951697150293000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduReverting more pumas support that doesn't work yet 2023-10-12 16:38:13 -06008a59bd7c1be85c6414612f7a74f3f9057a747e95Reverting more pumas support that doesn't work yeteditbld/namelist_files/namelist_definition.xmleditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_defaults_cam.xmlc1eb7f84dfbb2053a9b07f93160cf4faf5546aff1697150476000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduOops, missed a bracket 2023-10-12 16:41:16 -0600c1eb7f84dfbb2053a9b07f93160cf4faf5546affOops, missed a bracketeditbld/namelist_files/namelist_defaults_cam.xmlExternals.cfg52bdd66e0ee3fbb30f94e3b7183b97472f4562d71697153457000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ccs_config external 2023-10-12 19:30:57 -040052bdd66e0ee3fbb30f94e3b7183b97472f4562d7update ccs_config externaleditExternals.cfgsrc/control/cam_history.F901fac980bc28b8709dabea9041fb676c286beb4c91697156863000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educode cleanup 2023-10-12 18:27:43 -06001fac980bc28b8709dabea9041fb676c286beb4c9code cleanupeditsrc/control/cam_history.F90src/physics/clubb/advance_clubb_core_module.F90src/physics/clubb/stats_variables.F90src/physics/clubb/clubb_api_module.F90src/physics/clubb/stats_zm_module.F90src/physics/clubb/mixing_length.F90src/physics/clubb/parameter_indices.F90src/physics/clubb/parameters_tunable.F90src/physics/clubb/model_flags.F90src/physics/clubb/advance_helper_module.F900023230a671f6aa03bc6e3ab4202e9da4c25b6071697206808000http://carson.math.uwm.edu/jenkins/user/rootrootroot@carson.localdomainRaw-copy updating src/physics/clubb 2023-10-13 09:20:08 -05000023230a671f6aa03bc6e3ab4202e9da4c25b607Raw-copy updating src/physics/clubbeditsrc/physics/clubb/advance_clubb_core_module.F90editsrc/physics/clubb/parameters_tunable.F90editsrc/physics/clubb/stats_zm_module.F90editsrc/physics/clubb/advance_helper_module.F90editsrc/physics/clubb/parameter_indices.F90editsrc/physics/clubb/model_flags.F90editsrc/physics/clubb/mixing_length.F90editsrc/physics/clubb/stats_variables.F90editsrc/physics/clubb/clubb_api_module.F90src/physics/cam_dev/physpkg.F90b489af0fbb554e39affd2acec66e8dead782b9f21697213065000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumodify initialization in cam_dev to match cam 2023-10-13 12:04:25 -0400b489af0fbb554e39affd2acec66e8dead782b9f2modify initialization in cam_dev to match cameditsrc/physics/cam_dev/physpkg.F90src/physics/cam/physpkg.F90cime_config/cam.case_setupcime_config/buildnml99361e130b072275b365d00c6bb01015c16804601697217874000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdates to copy GEOS-Chem files to case and then run directory Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-13 11:24:34 -060099361e130b072275b365d00c6bb01015c1680460Updates to copy GEOS-Chem files to case and then run directoryeditcime_config/buildnmleditcime_config/cam.case_setupeditsrc/physics/cam/physpkg.F90src/physics/cam_dev/physpkg.F90Externals_CAM.cfgsrc/physics/simple/held_suarez_cam.F90src/physics/simple/physpkg.F90src/physics/cam/geopotential.F90src/physics/cam/physpkg.F90381269c8b72efeb832aa1d4931572e25c1f82ad61697219587000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdditional Cheryl code review updates. 2023-10-13 11:53:07 -0600381269c8b72efeb832aa1d4931572e25c1f82ad6Additional Cheryl code review updates.editsrc/physics/cam_dev/physpkg.F90editsrc/physics/simple/held_suarez_cam.F90editExternals_CAM.cfgeditsrc/physics/simple/physpkg.F90editsrc/physics/cam/geopotential.F90editsrc/physics/cam/physpkg.F90cime_config/cam.case_setupcime_config/cam.case_setup.py2731270797495a077c90c5a14a0ada6c1411a0181697228985000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange cam case_setup script from bash to python This update requires cime updates at: https://github.com/ESMCI/cime/pull/4497 Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-13 14:29:45 -06002731270797495a077c90c5a14a0ada6c1411a018Change cam case_setup script from bash to pythondeletecime_config/cam.case_setupaddcime_config/cam.case_setup.pysrc/physics/cam/constituents.F90c44c904445d52b334d0e7e9aabe40c8a008a24ae1697229177000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix typo in error message Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-13 14:32:57 -0600c44c904445d52b334d0e7e9aabe40c8a008a24aeFix typo in error messageeditsrc/physics/cam/constituents.F90Externals.cfge28d2bc8192e8ebb85037b3ec66aea8ee10669051697229287000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to allow for derecho priority setting 2023-10-13 14:34:47 -0600e28d2bc8192e8ebb85037b3ec66aea8ee1066905Update externals to allow for derecho priority settingeditExternals.cfgsrc/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_definition.xml672aaf168cfcd6e0a38e16e01afbd28aac7fe0441697229771000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress review requests 2023-10-13 14:42:51 -0600672aaf168cfcd6e0a38e16e01afbd28aac7fe044address review requestseditbld/namelist_files/namelist_definition.xmleditsrc/physics/cam/cldfrc2m.F90bld/namelist_files/namelist_defaults_cam.xmlc50fcc610f9e5dc209d7adc77ebca09a019b64f51697231128000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange namelist based on verbal request from Adam, Cecile and Peter 2023-10-13 15:05:28 -0600c50fcc610f9e5dc209d7adc77ebca09a019b64f5Change namelist based on verbal request from Adam, Cecile and Petereditbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testlist_cam.xml8b7a4ea0c67b3e8a2ba4d512cd8f11eafe3f8ee61697244859000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange PE layout to fix some derecho failures 2023-10-13 18:54:19 -06008b7a4ea0c67b3e8a2ba4d512cd8f11eafe3f8ee6Change PE layout to fix some derecho failureseditcime_config/testdefs/testlist_cam.xmlsrc/control/cam_history.F90src/control/cam_history_support.F908aa74376d2481d3ba32319d57dbc529e7f830a021697427656000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educhange implementation to static array 2023-10-15 21:40:56 -06008aa74376d2481d3ba32319d57dbc529e7f830a02change implementation to static arrayeditsrc/control/cam_history_support.F90editsrc/control/cam_history.F90src/physics/simple/kessler_cam.F900013f8add777e33507fdc15e9d55f2ce59bc6b901697472453000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd missing 'ncol' bounds to CCPP physics input arguments. 2023-10-16 10:07:33 -06000013f8add777e33507fdc15e9d55f2ce59bc6b90Add missing 'ncol' bounds to CCPP physics input arguments.editsrc/physics/simple/kessler_cam.F90cime_config_cesm_machines_files/config_machines.xmlcime_config_cesm_machines_files/intel_nelson.cmakecime_config_cesm_machines_files/gnu_nelson.cmakeedf936b65fa92205d85e1c2f13f9ef1c3f2b1bb21697483905000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate to esmf path 2023-10-16 14:18:25 -0500edf936b65fa92205d85e1c2f13f9ef1c3f2b1bb2Update to esmf patheditcime_config_cesm_machines_files/config_machines.xmleditcime_config_cesm_machines_files/gnu_nelson.cmakeeditcime_config_cesm_machines_files/intel_nelson.cmakesrc/physics/spcam/crmclouds_camaerosols.F90a35cef1720ce73dcac14ee7aae580c8ea63f4d4a1697487785000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing SPCAM test 2023-10-16 14:23:05 -0600a35cef1720ce73dcac14ee7aae580c8ea63f4d4aFix failing SPCAM testeditsrc/physics/spcam/crmclouds_camaerosols.F90Externals.cfgc2bb018620632d163ac9e3c3b7b03a73a081bb341697494670000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to get job_priority setting on derecho 2023-10-16 16:17:50 -0600c2bb018620632d163ac9e3c3b7b03a73a081bb34Update externals to get job_priority setting on derechoeditExternals.cfgadvance_clubb_core_module.F901a7e15ee602ebadad150327e1e40ac59800ea1dc1697555413000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDeletes svn id tag, will trigger host-model nightly tests. 2023-10-17 10:10:13 -05001a7e15ee602ebadad150327e1e40ac59800ea1dcDeletes svn id tag, will trigger host-model nightly tests.editadvance_clubb_core_module.F90src/physics/clubb/advance_clubb_core_module.F9058dbd5f094d776e8bfc210f96d8303e6dc3a6ce11697555662000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminlarsongroupgithub@gmail.comRaw-copy updating src/physics/clubb 2023-10-17 10:14:22 -050058dbd5f094d776e8bfc210f96d8303e6dc3a6ce1Raw-copy updating src/physics/clubbeditsrc/physics/clubb/advance_clubb_core_module.F90cime_config/config_pes.xmlcime_config/config_component.xmlcime_config/config_compsets.xmlba3134841b6258f4ff516eb6f4f91e876ba5a7811697564949000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem acronym in compset long name from GC to GEOSCHEM The compset aliases will continue to use GC, e.g. FCnudged_GC Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-17 11:49:09 -0600ba3134841b6258f4ff516eb6f4f91e876ba5a781Change GEOS-Chem acronym in compset long name from GC to GEOSCHEMeditcime_config/config_pes.xmleditcime_config/config_compsets.xmleditcime_config/config_component.xmldoc/ChangeLogc468dc042761fc14526a67191184876104654e731697565061000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_131 2023-10-17 11:51:01 -0600c468dc042761fc14526a67191184876104654e73Update ChangeLog for cam6_3_131editdoc/ChangeLogsrc/control/cam_history.F9057fc39c7f5bc5cd45d18213a35232d44527c8ee41697567951000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd units and calendar to time_bounds variable 2023-10-17 12:39:11 -060057fc39c7f5bc5cd45d18213a35232d44527c8ee4add units and calendar to time_bounds variableeditsrc/control/cam_history.F90bld/build-namelist2bf6a8466a9b91f953f598d266f0c9f43c3cb1a01697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate build-namelist to include wpxp_Ri_exp 2023-10-17 14:23:16 -05002bf6a8466a9b91f953f598d266f0c9f43c3cb1a0Update build-namelist to include wpxp_Ri_expeditbld/build-namelistbld/build-namelist223000ce1c1bedb6b9896ebb70b8d0c1f9ae8ecf1697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate build-namelist Put `clubb_wpxp_Ri_exp` in the correct spot 2023-10-17 14:23:16 -0500223000ce1c1bedb6b9896ebb70b8d0c1f9ae8ecfUpdate build-namelisteditbld/build-namelistbld/namelist_files/namelist_defaults_cam.xml3d62edf25299726a38b569d3126d3a9f3db8ce441697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate namelist_defaults_cam.xml to include CLUBB parameter wpxp_Ri_exp 2023-10-17 14:23:16 -05003d62edf25299726a38b569d3126d3a9f3db8ce44Update namelist_defaults_cam.xml to include CLUBB parameter wpxp_Ri_expeditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_definition.xmlc3f0ab952ca9597669f8b4d7e265ee6cabbfcf6d1697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate namelist_definition.xml to include CLUBB parameter wpxp_Ri_exp 2023-10-17 14:23:16 -0500c3f0ab952ca9597669f8b4d7e265ee6cabbfcf6dUpdate namelist_definition.xml to include CLUBB parameter wpxp_Ri_expeditbld/namelist_files/namelist_definition.xmlrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh973bc684f3790287667db8e8ed79cfdaaf55ef751697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm_coarse_res_r8029_flags.sh to include CLUBB parameter wpxp_Ri_exp 2023-10-17 14:23:16 -0500973bc684f3790287667db8e8ed79cfdaaf55ef75Update run_cesm_uwm_coarse_res_r8029_flags.sh to include CLUBB parameter wpxp_Ri_expeditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shsrc/physics/cam/clubb_intr.F90df3e9194e7204a7b88a17503ee654906e7a4e8961697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate clubb_intr.F90 to include CLUBB parameter wpxp_Ri_exp 2023-10-17 14:23:16 -0500df3e9194e7204a7b88a17503ee654906e7a4e896Update clubb_intr.F90 to include CLUBB parameter wpxp_Ri_expeditsrc/physics/cam/clubb_intr.F90postprocessing/python_scripts/cam_profile_plotter_multicol.py3ff0031ca17b21dd19b6bc9f65179ac4b80419d51697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate cam_profile_plotter_multicol.py Removed variable Richardson_num 2023-10-17 14:23:16 -05003ff0031ca17b21dd19b6bc9f65179ac4b80419d5Update cam_profile_plotter_multicol.pyeditpostprocessing/python_scripts/cam_profile_plotter_multicol.pycime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camb78251a0c00db80a549a2621ad8b130118cde95c1697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate user_nl_cam Removed variable Richardson_num 2023-10-17 14:23:16 -0500b78251a0c00db80a549a2621ad8b130118cde95cUpdate user_nl_cameditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camrun_scripts/run_scam.bashf0d90e9df5b6dc85c65bc4db874383abf88e9f9c1697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_scam.bash Removed variable Richardson_num 2023-10-17 14:23:16 -0500f0d90e9df5b6dc85c65bc4db874383abf88e9f9cUpdate run_scam.basheditrun_scripts/run_scam.bashrun_scripts/run_cesm_uwm.sh67b4ef5a591e2c245d9a33e82d8da7162a6e6a361697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm.sh Removed variable Richardson_num 2023-10-17 14:23:16 -050067b4ef5a591e2c245d9a33e82d8da7162a6e6a36Update run_cesm_uwm.sheditrun_scripts/run_cesm_uwm.shrun_scripts/run_cesm_uwm_coarse_res.sh36c6bb70d5a42698de0a5d0a64890119c6a09dc51697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm_coarse_res.sh Removed variable Richardson_num 2023-10-17 14:23:16 -050036c6bb70d5a42698de0a5d0a64890119c6a09dc5Update run_cesm_uwm_coarse_res.sheditrun_scripts/run_cesm_uwm_coarse_res.shrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shd787b48e60c550917f034ab4c44c791f9d6540451697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm_coarse_res_gpu_no_silhs.sh Removed variable Richardson_num 2023-10-17 14:23:16 -0500d787b48e60c550917f034ab4c44c791f9d654045Update run_cesm_uwm_coarse_res_gpu_no_silhs.sheditrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh5c10499a137de1bcc5bc992c7487a292c09764e31697570596000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm_coarse_res_r8029_flags.sh Removed variable Richardson_num 2023-10-17 14:23:16 -05005c10499a137de1bcc5bc992c7487a292c09764e3Update run_cesm_uwm_coarse_res_r8029_flags.sheditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shbld/namelist_files/use_cases/2010_geoschem.xmlsrc/chemistry/geoschem/chemistry.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/use_cases/sd_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlda76f711576ac0143d5202aec009cdd54dfa548c1697576883000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange GEOS-Chem namelist and its parameter to use geoschem not gc This update also changes the subroutine used to read the namelist from gc_readnl to geoschem_readnl. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-17 15:08:03 -0600da76f711576ac0143d5202aec009cdd54dfa548cChange GEOS-Chem namelist and its parameter to use geoschem not gceditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/use_cases/sd_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xmleditsrc/chemistry/geoschem/chemistry.F90editbld/namelist_files/use_cases/hist_geoschem.xmlsrc/physics/rrtmgp/rrtmgp_inputs.F907ce9dd8d44b20d7c90716c32e2f1a90181d153ee1697577375000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd limits on P and T for FMTHIST 2023-10-17 15:16:15 -06007ce9dd8d44b20d7c90716c32e2f1a90181d153eeadd limits on P and T for FMTHISTeditsrc/physics/rrtmgp/rrtmgp_inputs.F90src/chemistry/geoschem/chemistry.F907f1d0993528283e53e692046d66d8411b447a0f11697586714000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdates for paper, SE grid compatibility, bug fixes - Support Input_Opt%correctConvUTLS to correct for convective scavenging of soluble tracers (science update, upcoming paper) - Update to UCX mpi broadcast of State_Chm%NOXCOEFF as SE grid not all CPUs have same amount of chunks and MPI code has to be moved to higher level that is aware of chunking - Update to drydep namelist for SE compatibility - Fix for incorrect SOA mapping inconsistent with published Fritz et al. (2022) methodology Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu> 2023-10-17 19:51:54 -04007f1d0993528283e53e692046d66d8411b447a0f1Updates for paper, SE grid compatibility, bug fixeseditsrc/chemistry/geoschem/chemistry.F90doc/ChangeLog311a23d023282afbe3c8d4ca2ed0eb0efebaf7d61697643669000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_3_132 2023-10-18 09:41:09 -0600311a23d023282afbe3c8d4ca2ed0eb0efebaf7d6ChangeLog for cam6_3_132editdoc/ChangeLogsrc/physics/rrtmgp/rrtmgp_inputs.F90bld/namelist_files/namelist_defaults_cam.xmlaf0446aa994783a1195e09c1db3e6b931094fe041697649113000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix namelist and cloud optics indexing for waccm 2023-10-18 11:11:53 -0600af0446aa994783a1195e09c1db3e6b931094fe04fix namelist and cloud optics indexing for waccmeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/rrtmgp/rrtmgp_inputs.F90run_scripts/run_cesm_uwm_coarse_res_r8029_flags.shrun_scripts/run_cesm_uwm_coarse_res.shb73c3a87e59620eb16ebc5fa5b6320292cfb07d11697658951000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging runscripts back to using two mpi tasks. 2023-10-18 14:55:51 -0500b73c3a87e59620eb16ebc5fa5b6320292cfb07d1Changing runscripts back to using two mpi tasks.editrun_scripts/run_cesm_uwm_coarse_res.sheditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shsrc/chemistry/geoschem/chemistry.F90a66be1578443f84c546a795cf9b4f168d5d019e41697688895000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comSlight formatting updates to GEOS-Chem run log output 2023-10-19 00:14:55 -0400a66be1578443f84c546a795cf9b4f168d5d019e4Slight formatting updates to GEOS-Chem run log outputeditsrc/chemistry/geoschem/chemistry.F90doc/ChangeLog987cf6c859f4fe4debe95fdaece38dfa645d40791697720077000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangeLog 2023-10-19 06:54:37 -0600987cf6c859f4fe4debe95fdaece38dfa645d4079update ChangeLogeditdoc/ChangeLogdoc/ChangeLog493df31ed68a185e4e0956909b05016fb78e89c31697722002000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangeLog 2023-10-19 07:26:42 -0600493df31ed68a185e4e0956909b05016fb78e89c3update ChangeLogeditdoc/ChangeLogadvance_helper_module.F908be88d0f94ca7883638a1e87415cb48dc0d03ca01697723854000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove svn id tag in order to trigger nightly tests. 2023-10-19 08:57:34 -05008be88d0f94ca7883638a1e87415cb48dc0d03ca0Remove svn id tag in order to trigger nightly tests.editadvance_helper_module.F90src/control/cam_history.F90src/utils/cam_grid_support.F908df5b6b02abe818499a7f968db1c2966ef541d2d1697729440000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix for dims with bnds; make field indexing consistent 2023-10-19 09:30:40 -06008df5b6b02abe818499a7f968db1c2966ef541d2dfix for dims with bnds; make field indexing consistenteditsrc/control/cam_history.F90editsrc/utils/cam_grid_support.F90src/control/cam_history.F902320d0e38592cac19a6def3acc1b87bcc198db8c1697732403000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edumake field indexing consistent; remove satfile file loop 2023-10-19 10:20:03 -06002320d0e38592cac19a6def3acc1b87bcc198db8cmake field indexing consistent; remove satfile file loopeditsrc/control/cam_history.F90advance_windm_edsclrm_module.F90ffdd91c97979046cdbe2f9502cb3047a482c6da71697732821000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved 3rd svn id tag in order to trigger nightly tests 2023-10-19 11:27:01 -0500ffdd91c97979046cdbe2f9502cb3047a482c6da7Removed 3rd svn id tag in order to trigger nightly testseditadvance_windm_edsclrm_module.F90src/physics/rrtmgp/radiation.F9018efa42822fc02556edb2dedf7519a7bb0fafe0c1697733551000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edureplace 1 by ktopcam in a few places for high top models 2023-10-19 12:39:11 -040018efa42822fc02556edb2dedf7519a7bb0fafe0creplace 1 by ktopcam in a few places for high top modelseditsrc/physics/rrtmgp/radiation.F90src/control/cam_history.F90e2742392e1a158f3dfe5eae7295dac8121a5404b1697737877000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd parameters for split file indices 2023-10-19 11:51:17 -0600e2742392e1a158f3dfe5eae7295dac8121a5404badd parameters for split file indiceseditsrc/control/cam_history.F90src/control/cam_history.F90f3c8a30e104b011b27e3d30c53a34fd5153b6b8e1697738658000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edubetter logging 2023-10-19 12:04:18 -0600f3c8a30e104b011b27e3d30c53a34fd5153b6b8ebetter loggingeditsrc/control/cam_history.F90src/control/cam_history.F90e05302cd4d4c2e40b960790e6ed50160cd553e6c1697743685000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduremove unnecessary loop 2023-10-19 13:28:05 -0600e05302cd4d4c2e40b960790e6ed50160cd553e6cremove unnecessary loopeditsrc/control/cam_history.F90src/control/cam_history.F90157639d5ada0928c21c0a0d4506cc549c09787e01697756810000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix indices 2023-10-19 17:06:50 -0600157639d5ada0928c21c0a0d4506cc549c09787e0fix indiceseditsrc/control/cam_history.F90Externals_CAM.cfg972c057e14c63a6e4a0cd5ec20d3ed66c6fe3c041697815487000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate GEOS-Chem external tag to 14.1.2 2023-10-20 11:24:47 -0400972c057e14c63a6e4a0cd5ec20d3ed66c6fe3c04Update GEOS-Chem external tag to 14.1.2editExternals_CAM.cfgcime_config/config_compsets.xml95bc735e49a1d454cc82550b901d690b3582248b1697822401000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unnecessary comment about NTHRDS Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-20 11:20:01 -060095bc735e49a1d454cc82550b901d690b3582248bRemove unnecessary comment about NTHRDSeditcime_config/config_compsets.xmlsrc/control/cam_history.F90356af85705872d0b26f819ce1b76ff45f89121df1697831922000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd parameters for sat, restart, and init file indices 2023-10-20 13:58:42 -0600356af85705872d0b26f819ce1b76ff45f89121dfadd parameters for sat, restart, and init file indiceseditsrc/control/cam_history.F90src/physics/cam/convect_shallow.F90src/physics/cam/zm_conv_intr.F903f6d12ddccd19c03fdf7d7fcd18cb444aa679d521697838422000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduModfy calling sequences to allow for removal of zm_common 2023-10-20 15:47:02 -06003f6d12ddccd19c03fdf7d7fcd18cb444aa679d52Modfy calling sequences to allow for removal of zm_commoneditsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90src/control/cam_history.F90src/control/cam_history_support.F90cd4cece872b6fb46aa03846657a3372fe2d3a51e1697844126000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educlean up File indexing logic 2023-10-20 17:22:06 -0600cd4cece872b6fb46aa03846657a3372fe2d3a51eclean up File indexing logiceditsrc/control/cam_history_support.F90editsrc/control/cam_history.F90src/physics/cam_dev/stochastic_emulated_cam.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/cam_dev/stochastic_tau_cam.F90852137e88c34170e197050f6b69029a1ce7895e21698180561000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduChanges to addres initial review comments 2023-10-24 14:49:21 -0600852137e88c34170e197050f6b69029a1ce7895e2Changes to addres initial review commentseditsrc/physics/cam_dev/stochastic_emulated_cam.F90editcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam_dev/stochastic_tau_cam.F90src/physics/cam/phys_prop.F90cime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/user_nl_camcime_config/testdefs/testlist_cam.xmlcime_config/usermods_dirs/scam_rrtmgp/user_nl_camcime_config/usermods_dirs/rrtmgp/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/shell_commandscime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/shell_commandsdoc/ChangeLogcime_config/usermods_dirs/scam_rrtmgp/shell_commandssrc/physics/spcam/crm/CLUBB/crmx_mt95.f90cime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_clmcime_config/usermods_dirs/rrtmgp/shell_commands3e7282b7e1a0653e63abe80e829162aa472c7a891698186387000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd tests; update ChangeLog 2023-10-24 18:26:27 -04003e7282b7e1a0653e63abe80e829162aa472c7a89add tests; update ChangeLogeditcime_config/testdefs/testlist_cam.xmleditsrc/physics/spcam/crm/CLUBB/crmx_mt95.f90editdoc/ChangeLogdeletecime_config/usermods_dirs/scam_rrtmgp/user_nl_cameditsrc/physics/cam/phys_prop.F90addcime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/user_nl_camdeletecime_config/usermods_dirs/rrtmgp/user_nl_camaddcime_config/testdefs/testmods_dirs/cam/cam6_port_f09_rrtmgp/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_camdeletecime_config/usermods_dirs/rrtmgp/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/user_nl_clmdeletecime_config/usermods_dirs/scam_rrtmgp/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_rrtmgp/shell_commandsstats_variables.F90stats_clubb_utilities.F90clubb_api_module.F909ca3f47f2c7361719136ed64975e29e55f8936261698188257000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFinally removing scratch variables. (#1116) * Finally removing scratch variables. * Zeroing out below ground levels to prevent NaN in stats. 2023-10-24 17:57:37 -05009ca3f47f2c7361719136ed64975e29e55f893626Finally removing scratch variables. (#1116)editstats_variables.F90editstats_clubb_utilities.F90editclubb_api_module.F90cime_config/testdefs/testlist_cam.xmlf1cfe38deb758cd637c1d4702ca606b35a293ae41698255181000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix tests 2023-10-25 13:33:01 -0400f1cfe38deb758cd637c1d4702ca606b35a293ae4fix testseditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam/clubb_intr.F90536e654f9e2d7c41e2afd2d8f528e9eb0c9f36951698256904000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis should have been commited yesterday alongside the clubb changes, RESOLVED:707b19871c01372e732e7712a0076db01e02ae17 2023-10-25 13:01:44 -0500536e654f9e2d7c41e2afd2d8f528e9eb0c9f3695This should have been commited yesterday alongside the clubb changes, RESOLVED:707b19871c01372e732e7712a0076db01e02ae17editsrc/physics/cam/clubb_intr.F90bld/build-namelistsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90bld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_definition.xmlExternals_CAM.cfgsrc/dynamics/mpas/dyn_comp.F90src/dynamics/mpas/Makefile53a194de85aa30a8cf2e5422088c93befb2e771d1698259826000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate mpas external to use v8.0.1 Changes include updating the mpas external hash to a few commits after the 'v8.0.1' tag, updating the mpas/Makefile, adding the mpas_cam_damping_levels namelist option, updating some subroutine calls to use new arguments, and setting up the halo_groups MPAS uses. 2023-10-25 12:50:26 -060053a194de85aa30a8cf2e5422088c93befb2e771dUpdate mpas external to use v8.0.1editsrc/dynamics/mpas/Makefileeditbld/build-namelisteditsrc/dynamics/mpas/dyn_comp.F90editbld/namelist_files/namelist_defaults_cam.xmleditExternals_CAM.cfgeditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/mpas/driver/cam_mpas_subdriver.F90src/physics/cam/clubb_intr.F901ffc501bcd0e3a68338d9f7e5cb2706c940f11031698263137000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReplacing the calculation of first_call in a logically equivalent way. 2023-10-25 14:45:37 -05001ffc501bcd0e3a68338d9f7e5cb2706c940f1103Replacing the calculation of first_call in a logically equivalent way.editsrc/physics/cam/clubb_intr.F90src/utils/cam_ccpp/ccpp_constituent_prop_mod.F90314e57bb29b5dbb81295e87f4c43d4087a2410f41698419083000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdditional code review updates. 2023-10-27 09:04:43 -0600314e57bb29b5dbb81295e87f4c43d4087a2410f4Additional code review updates.editsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90Externals_CAM.cfg8b72ec91225e1262d897235198e019e87ef8a7ae1698419468000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduSwitch atmospheric_physics external to the new ESCOMP URL. 2023-10-27 09:11:08 -06008b72ec91225e1262d897235198e019e87ef8a7aeSwitch atmospheric_physics external to the new ESCOMP URL.editExternals_CAM.cfgsrc/dynamics/se/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/time_mod.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/prim_state_mod.F90src/dynamics/se/restart_dynamics.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/dyn_time_mod.F90src/dynamics/se/dycore/fvm_consistent_se_cslam.F90src/dynamics/se/dycore/prim_init.F90317d98a1cc11b7df650587bdb02aea801901f1831698420259000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRename SE dycore time_mod to dyn_time_mod This commit renames time_mod in the SE dycore to dyn_time_mod in order to avoid naming conflicts with building with GEOS-Chem. All USE statements updated; zero differences in run output are expected. 2023-10-27 09:24:19 -0600317d98a1cc11b7df650587bdb02aea801901f183Rename SE dycore time_mod to dyn_time_modaddsrc/dynamics/se/dycore/dyn_time_mod.F90editsrc/dynamics/se/dycore/fvm_consistent_se_cslam.F90editsrc/dynamics/se/restart_dynamics.F90editsrc/dynamics/se/dycore/prim_state_mod.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dycore/prim_init.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90deletesrc/dynamics/se/dycore/time_mod.F90src/dynamics/se/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/se_dyn_time_mod.F90src/dynamics/se/dycore/prim_state_mod.F90src/dynamics/se/restart_dynamics.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/dyn_time_mod.F90src/dynamics/se/dycore/fvm_consistent_se_cslam.F90src/dynamics/se/dycore/prim_init.F90358fda7f3d8d9f4950369fb22cff394046cb3cf01698420269000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRename to se_dyn_time_mod instead of dyn_time_mod Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu> 2023-10-27 09:24:29 -0600358fda7f3d8d9f4950369fb22cff394046cb3cf0Rename to se_dyn_time_mod instead of dyn_time_modeditsrc/dynamics/se/restart_dynamics.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dp_coupling.F90addsrc/dynamics/se/dycore/se_dyn_time_mod.F90editsrc/dynamics/se/dycore/prim_state_mod.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90deletesrc/dynamics/se/dycore/dyn_time_mod.F90editsrc/dynamics/se/dycore/prim_init.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dycore/fvm_consistent_se_cslam.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90src/utils/cam_ccpp/ccpp_constituent_prop_mod.F90a75745037db586217767137713f88c8b7e6abd291698420976000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate 'errmsg' strings to be empty for CAM-specific CCPP routines. 2023-10-27 09:36:16 -0600a75745037db586217767137713f88c8b7e6abd29Update 'errmsg' strings to be empty for CAM-specific CCPP routines.editsrc/utils/cam_ccpp/ccpp_constituent_prop_mod.F90Externals_CAM.cfgcf0e7b66249fc3e9b605676cea232e66f304cc131698678762000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comUpdate Externals_CAM.cfg to use hash as 14.1.2 matches branch as well 2023-10-30 11:12:42 -0400cf0e7b66249fc3e9b605676cea232e66f304cc13Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as welleditExternals_CAM.cfgExternals_CAM.cfg95cd2a57782266451154f4dab74ec4111071570a1698687783000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comRevert "Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well" This reverts commit cf0e7b66249fc3e9b605676cea232e66f304cc13. 2023-10-30 13:43:03 -040095cd2a57782266451154f4dab74ec4111071570aRevert "Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well"editExternals_CAM.cfgdoc/ChangeLog1dcc8b49c1865bbea850830d44b2473b471bf63f1698688007000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduInitial ChangeLog Add ChangeLog entry before PR review and tag assignment 2023-10-30 11:46:47 -06001dcc8b49c1865bbea850830d44b2473b471bf63fInitial ChangeLogeditdoc/ChangeLogsrc/physics/simple/kessler_cam.F9095cf22414ea3b412c2301b4cd0bd24bcad40b93b1698691701000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix dimension error in Kessler 'prec_sed' argument. 2023-10-30 12:48:21 -060095cf22414ea3b412c2301b4cd0bd24bcad40b93bFix dimension error in Kessler 'prec_sed' argument.editsrc/physics/simple/kessler_cam.F90src/physics/simple/held_suarez_cam.F906a5af17410b5b213d310994dc92d2aa9133169091698695356000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRemove badly-placed line continuation character. 2023-10-30 13:49:16 -06006a5af17410b5b213d310994dc92d2aa913316909Remove badly-placed line continuation character.editsrc/physics/simple/held_suarez_cam.F90cime_config/cam.case_setup.py1b5c2811b48449d6e8ebfa65acde229d87cb30d71698766398000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSuggested changes to cam.case_setup.py 2023-10-31 09:33:18 -06001b5c2811b48449d6e8ebfa65acde229d87cb30d7Suggested changes to cam.case_setup.pyeditcime_config/cam.case_setup.pycime_config/cam.case_setup.py0d4bf3fb07fbad54d31173f9da2650da9162138d1698767165000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduFix bug and change error messages in cam.case_setup.py Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-10-31 09:46:05 -06000d4bf3fb07fbad54d31173f9da2650da9162138dFix bug and change error messages in cam.case_setup.pyeditcime_config/cam.case_setup.pydoc/ChangeLog9cbff99ae73f346a3e62d48d8093c9f3b3a114711698770841000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate ChangeLog. 2023-10-31 10:47:21 -06009cbff99ae73f346a3e62d48d8093c9f3b3a11471Update ChangeLog.editdoc/ChangeLogmixing_length.F9022872a5139682034753065f97d05099ddf2e3a471698787332000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLatest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119) - Added new folder input/tunable_parameters_tauMatchLscale/ for latest taus code setup reproducing the master Lscale output. - Changes in src/CLUBB_core_mixing_length.F90: - Renamed ddzt_umvm -> ddzt_umvm_sqd ddzt_umvm_clipped -> ddzt_umvm_sqd_clipped sqrt_ddzt_umvm -> norm_ddzt_umvm smooth_sqrt_ddzt_umvm -> smooth_norm_ddzt_umvm Ri_zm_clipped -> Ri_zm_smooth in some places - Made some variable replacements for consistency's sake - Fixed path of log files in run_scripts/run_bindiff_all.py 2023-10-31 16:22:12 -050022872a5139682034753065f97d05099ddf2e3a47Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)editmixing_length.F90mixing_length.F90advance_clubb_core_module.F90337f2b0a17376a45c2c1ac2250b6cff75f15d6ad1698795774000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120) - Removed commented lines from tunable_parameters.in file in input/tunable_parameters_tauMatchLscale - Increased z_displace value from 10 to 25. This value was chosen so that the taus code with the parameter and flag settings in input/tunable_parameters_tauMatchLscale match the master Lscale output below clouds - Fixed some issues with the new parameter wpxp_Ri_exp: - Moved new exponentiation to a place so that it emulates the previous version with sqrt(Ri_zm) - Adjusted code for l_smooth_min_max=true to match the default version 2023-10-31 18:42:54 -0500337f2b0a17376a45c2c1ac2250b6cff75f15d6adBIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120)editmixing_length.F90editadvance_clubb_core_module.F90src/control/cam_history.F90src/utils/cam_grid_support.F90ed5dbe26989accdb0a1dc7486fa07581f1ce4ca61698878090000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduaddress reviewer comments 2023-11-01 16:34:50 -0600ed5dbe26989accdb0a1dc7486fa07581f1ce4ca6address reviewer commentseditsrc/utils/cam_grid_support.F90editsrc/control/cam_history.F90src/control/cam_history.F905149a481a3d6c34f64ffb14868681630271d66851698878180000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduremove unused variable 2023-11-01 16:36:20 -06005149a481a3d6c34f64ffb14868681630271d6685remove unused variableeditsrc/control/cam_history.F90src/control/cam_history.F909da259093ce4cfa2b13e2decffa515f4153ee04a1698878530000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix looping range 2023-11-01 16:42:10 -06009da259093ce4cfa2b13e2decffa515f4153ee04afix looping rangeeditsrc/control/cam_history.F90bld/configure6443fcb68319296a3828c63611bb5014d146e1b41698947497000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments 2023-11-02 11:51:37 -06006443fcb68319296a3828c63611bb5014d146e1b4Addressing review commentseditbld/configurebld/namelist_files/use_cases/sd_geoschem.xmlcime_config/testdefs/testlist_cam.xmlcime_config/config_component.xmlcime_config/config_compsets.xml84e830df9a6490f8b83a4a5e933527b9fc71e63e1699024467000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove the FCSD_GC compset This compset for GEOS-Chem is not currently functional. We can bring back the option in the future if there is demand. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-11-03 09:14:27 -060084e830df9a6490f8b83a4a5e933527b9fc71e63eRemove the FCSD_GC compsetdeletebld/namelist_files/use_cases/sd_geoschem.xmleditcime_config/config_component.xmleditcime_config/testdefs/testlist_cam.xmleditcime_config/config_compsets.xmlcime_config/config_pes.xmlcime_config/config_compsets.xml15bbeef4b0556509d1db473b80e235f02e6cb11b1699024752000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove NTHRDS overrides for GEOS-Chem NTHRDS is 1 by default when using GEOS-Chem compsets so these overrides are not necessary. We find that manually changing NTHRDS to something other than 1 breaks the model, but this is the case with non-GEOS-Chem compsets as well. Unless this becomes a problem the overrides are not needed at this time. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-11-03 09:19:12 -060015bbeef4b0556509d1db473b80e235f02e6cb11bRemove NTHRDS overrides for GEOS-Chemeditcime_config/config_compsets.xmleditcime_config/config_pes.xmldoc/ChangeLog010f084d9d2d5b0bef73322413d58ce9e8d982b31699055698000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduCorrect namelist file changes in ChangeLog 2023-11-03 17:54:58 -0600010f084d9d2d5b0bef73322413d58ce9e8d982b3Correct namelist file changes in ChangeLogeditdoc/ChangeLog.gitignore392e9e33494b472b4367152d6b4a96c1fc22d37d1699475131000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove redundant includes of src/hemco in .gitignore Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-11-08 13:25:31 -0700392e9e33494b472b4367152d6b4a96c1fc22d37dRemove redundant includes of src/hemco in .gitignoreedit.gitignoreparameters_tunable.F90clubb_api_module.F90f7c02bb877ebac54c69c91bc0bbde80bb9f843601699478932000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated CLUBB so that adj_low_res_nu (which can be called on its own or called through calling setup_parameters) no longer uses momentum_heights and thermodynamic_heights, but rather makes use of gr%zm and gr%zt, which are always set and available by the time the calls are made. 2023-11-08 15:28:52 -0600f7c02bb877ebac54c69c91bc0bbde80bb9f84360Updated CLUBB so that adj_low_res_nu (which can be called on its owneditparameters_tunable.F90editclubb_api_module.F90src/physics/cam/clubb_intr.F908a0934f1451fa8dd43ae784de2c1a8a5fa29d3841699482161000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated the CLUBB interface for a change in CLUBB. 2023-11-08 16:22:41 -06008a0934f1451fa8dd43ae784de2c1a8a5fa29d384Updated the CLUBB interface for a change in CLUBB.editsrc/physics/cam/clubb_intr.F90src/control/cam_history.F907a0e5282e7dd573455301bf4db753cccc4c4f8a51699483905000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edulogic to add file type flag to right part of hfilename_spec, updates to treat nhtfrq = 1 as instantaneous 2023-11-08 15:51:45 -07007a0e5282e7dd573455301bf4db753cccc4c4f8a5logic to add file type flag to right part of hfilename_spec, updates to treat nhtfrq = 1 as instantaneouseditsrc/control/cam_history.F90src/control/cam_history.F90f955d7f879dbbcacc1c108b2f53563c8f56565f61699484158000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educhange time_op value to "point" for instantaneous fields 2023-11-08 15:55:58 -0700f955d7f879dbbcacc1c108b2f53563c8f56565f6change time_op value to "point" for instantaneous fieldseditsrc/control/cam_history.F90advance_clubb_core_module.F90grid_class.F90clubb_api_module.F906e985b7481ae287afeaf0a548e131482930840fe1699486824000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving begin_height and end_height as outputs from setup_grid. They are only necessary as local variables inside of setup_grid. 2023-11-08 17:40:24 -06006e985b7481ae287afeaf0a548e131482930840feRemoving begin_height and end_height as outputs from setup_grid. Theyeditadvance_clubb_core_module.F90editgrid_class.F90editclubb_api_module.F90src/physics/cam/clubb_intr.F90ff05d2862e298755450f4e8e7a43ed09fb9645261699487269000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for recent changes to CLUBB. 2023-11-08 17:47:49 -0600ff05d2862e298755450f4e8e7a43ed09fb964526Updated for recent changes to CLUBB.editsrc/physics/cam/clubb_intr.F90mixing_length.F90parameters_tunable.F90advance_clubb_core_module.F90parameter_indices.F90clubb_api_module.F903e0adc18b4f8221be03da5e8670357090c34fd4d1699563846000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comZ displace tunable (#1122) CLUBB ticket #1115 Added the previously hard-coded z_displace as a tunable parameter. 2023-11-09 15:04:06 -06003e0adc18b4f8221be03da5e8670357090c34fd4dZ displace tunable (#1122)editmixing_length.F90editparameters_tunable.F90editadvance_clubb_core_module.F90editclubb_api_module.F90editparameter_indices.F90bld/build-namelist250c8eef0302c898c93032fe352a773db50b931b1699565654000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate build-namelist Added CLUBB tunable parameter `z_displace` 2023-11-09 15:34:14 -0600250c8eef0302c898c93032fe352a773db50b931bUpdate build-namelisteditbld/build-namelistbld/namelist_files/namelist_defaults_cam.xmlf8a2a50d2a41337d2f2de484ce29ff628c2636dd1699565654000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate namelist_defaults_cam.xml Added CLUBB tunable parameter `z_displace` 2023-11-09 15:34:14 -0600f8a2a50d2a41337d2f2de484ce29ff628c2636ddUpdate namelist_defaults_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_definition.xmlaea1d84f78cad7a82970fb79c8fc5209b0d405761699565654000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate namelist_definition.xml Added CLUBB tunable parameter `z_displace` 2023-11-09 15:34:14 -0600aea1d84f78cad7a82970fb79c8fc5209b0d40576Update namelist_definition.xmleditbld/namelist_files/namelist_definition.xmlrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh6d01d195a59dec0ac779ec112ce27f44f703207d1699565654000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate run_cesm_uwm_coarse_res_r8029_flags.sh Added CLUBB tunable parameter `z_displace` 2023-11-09 15:34:14 -06006d01d195a59dec0ac779ec112ce27f44f703207dUpdate run_cesm_uwm_coarse_res_r8029_flags.sheditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shsrc/physics/cam/clubb_intr.F906272a9cae5a433c56b3e00985d100e5acebf57e51699565654000http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffen42725900+domkesteffen@users.noreply.github.comUpdate clubb_intr.F90 Added CLUBB tunable parameter `z_displace` 2023-11-09 15:34:14 -06006272a9cae5a433c56b3e00985d100e5acebf57e5Update clubb_intr.F90editsrc/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F90ba8acd1ac7cb5c7f4642758c6a4e620649d0bc781699569565000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate subcol_SILHS.F90 for changes to the call to CLUBB's setup_grid_api 2023-11-09 16:39:25 -0600ba8acd1ac7cb5c7f4642758c6a4e620649d0bc78Update subcol_SILHS.F90 for changes to the call to CLUBB's setup_grid_apieditsrc/physics/cam/subcol_SILHS.F90src/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F907ed684cdae166f4154bb66efee56b999736a86de1699652608000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking work with latest clubb changes. 2023-11-10 15:43:28 -06007ed684cdae166f4154bb66efee56b999736a86deMaking work with latest clubb changes.editsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_intr.F90src/physics/cam/clubb_intr.F9084dd0f8657a9289e59729536e993ce5894be73151699660279000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging stat_indices to stats_metadata_type 2023-11-10 17:51:19 -060084dd0f8657a9289e59729536e993ce5894be7315Changing stat_indices to stats_metadata_typeeditsrc/physics/cam/clubb_intr.F90clubb_api_module.F90clip_explicit.F90advance_xm_wpxp_module.F90stats_lh_zt_module.F90stats_type_utilities.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90output_grads.F90stats_rad_zm_module.F90stats_rad_zt_module.F90pdf_closure_module.F90precipitation_fraction.F90numerical_check.F90stats_lh_sfc_module.F90stats_variables.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_zm_module.F90stats_clubb_utilities.F90sfc_varnce_module.F900eb82e3d60c5fd567e1f24a0015d2c6fd8f210691699661720000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNew Stats Indices Type (#1118) * Grouping stats indices into a derived type and making that accessible globally, for now. This does not run yet, but a checkpoint I wish to save. * Checkpoint to save * Checkpoint * It actually works now and is BFB with every case. * Starting to push the new derived type through the argument list. * The new dervied type, now stats_metadata, has been fed through the argument list. * Moved l_stats_samp into stats_metadata * Moved all the other stats_variables into stats_metadata * Small cleanup * Fixes a stats bug when calling compute_sample_mean in silhs. * Arrays in stats_metadata need only be allocated once, but we may want to call the stats init routines to set up more stats variables. So now we check for allocation before allocating. Also made the stat_indices type publicly available through clubb_api. * This should be initialized to 0. The new changes in cam were able to tease this out, which is a good sign. * A couple more to initialize to zero. * Moving stats_metadata to before stats_ variables in argument lists, just for consistency. * Changing stat_indices to stats_metadata_type 2023-11-10 18:15:20 -06000eb82e3d60c5fd567e1f24a0015d2c6fd8f21069New Stats Indices Type (#1118)editstats_zt_module.F90editstats_lh_zt_module.F90editstats_rad_zm_module.F90editstats_sfc_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90editadvance_xp2_xpyp_module.F90editclubb_api_module.F90editoutput_grads.F90editmixing_length.F90editpdf_closure_module.F90editstats_type_utilities.F90editadvance_xp3_module.F90editnumerical_check.F90editstats_lh_sfc_module.F90editfill_holes.F90editsetup_clubb_pdf_params.F90editadvance_windm_edsclrm_module.F90editprecipitation_fraction.F90editstats_rad_zt_module.F90editadvance_helper_module.F90editmono_flux_limiter.F90editstats_variables.F90editclip_explicit.F90editstats_zm_module.F90editsfc_varnce_module.F90editadvance_xm_wpxp_module.F90editstats_clubb_utilities.F90silhs_api_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F901fff41b95831158920098a46667c5bee20b406fd1699661720000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNew Stats Indices Type (#1118) * Grouping stats indices into a derived type and making that accessible globally, for now. This does not run yet, but a checkpoint I wish to save. * Checkpoint to save * Checkpoint * It actually works now and is BFB with every case. * Starting to push the new derived type through the argument list. * The new dervied type, now stats_metadata, has been fed through the argument list. * Moved l_stats_samp into stats_metadata * Moved all the other stats_variables into stats_metadata * Small cleanup * Fixes a stats bug when calling compute_sample_mean in silhs. * Arrays in stats_metadata need only be allocated once, but we may want to call the stats init routines to set up more stats variables. So now we check for allocation before allocating. Also made the stat_indices type publicly available through clubb_api. * This should be initialized to 0. The new changes in cam were able to tease this out, which is a good sign. * A couple more to initialize to zero. * Moving stats_metadata to before stats_ variables in argument lists, just for consistency. * Changing stat_indices to stats_metadata_type 2023-11-10 18:15:20 -06001fff41b95831158920098a46667c5bee20b406fdNew Stats Indices Type (#1118)editoutput_2D_samples_module.F90editsilhs_api_module.F90editlatin_hypercube_driver_module.F90bld/configuresrc/physics/.clubb_sparse_checkoutExternals_CAM.cfgsrc/physics/cosp2/.cosp_sparse_checkout8a07c9e37cb5028b08cf0c66d6505e9c60b691c01699969574000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremoves svn sparse checkout and uses git sparse checkout for all repos, combine clubb and silhs into clubb 2023-11-14 06:46:14 -07008a07c9e37cb5028b08cf0c66d6505e9c60b691c0removes svn sparse checkout and uses git sparse checkout for all repos, combine clubb and silhs into clubbeditbld/configureaddsrc/physics/.clubb_sparse_checkouteditExternals_CAM.cfgaddsrc/physics/cosp2/.cosp_sparse_checkoutsrc/physics/.clubb_sparse_checkoutsrc/physics/cosp2/.cosp_sparse_checkout401b3383103ed81dbbfbd4dbca836387d065a7cf1699969912000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd final carrage returns 2023-11-14 06:51:52 -0700401b3383103ed81dbbfbd4dbca836387d065a7cfadd final carrage returnseditsrc/physics/.clubb_sparse_checkouteditsrc/physics/cosp2/.cosp_sparse_checkoutsrc/physics/cosp2/.cosp_sparse_checkoutExternals_CAM.cfg5a2f611acb6020ebcc3a048421a09804c95c27b71699977588000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduModify COSP2 checkout to remove un-used directories/files. 2023-11-14 08:59:48 -07005a2f611acb6020ebcc3a048421a09804c95c27b7Modify COSP2 checkout to remove un-used directories/files.editsrc/physics/cosp2/.cosp_sparse_checkouteditExternals_CAM.cfgbld/configureExternals_CAM.cfge8707d5a3bd96c7c0ad32c9adf8518313ef02bf71699979512000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix paths, including a mistake introduced on my end. 2023-11-14 09:31:52 -0700e8707d5a3bd96c7c0ad32c9adf8518313ef02bf7Fix paths, including a mistake introduced on my end.editExternals_CAM.cfgeditbld/configureSkx_module.F9094ceac8b9273b15c668961304300e0f042f9844c1699991156000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging order of sqrt and **3 to improve stability, see clubb#1126. Since this is a change to the order of operations, it is BIT_CHANGING. 2023-11-14 13:45:56 -060094ceac8b9273b15c668961304300e0f042f9844cChanging order of sqrt and **3 to improve stability, see clubb#1126. Since this is a change to the order of operations, it is BIT_CHANGING.editSkx_module.F90constants_clubb.F9080f7ee00a316e443c95eeb822d14eb5ba4b10b831699995955000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSetting the minimum tolerance to be epsilon, this is BIT_CHANGING but only for single precision. See larson-group/clubb#1126 2023-11-14 15:05:55 -060080f7ee00a316e443c95eeb822d14eb5ba4b10b83Setting the minimum tolerance to be epsilon, this is BIT_CHANGING but only for single precision. See larson-group/clubb#1126editconstants_clubb.F90mixing_length.F9055b6329613ecf69fa8cd632b83ddc2dbf60f64711699997980000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING! Updated taus code calculations - CLUBB ticket #1115 (#1125) - Changed invrs_tau_xp2/wp2 calculations to match the wpxp calculation: Those now have a brunt_freq_pos and a brunt_freq_out_cloud term - Changed tmp_calc magic number from .007 to .001 - Changed upper clipping bound for Ri_zm from 12 to 2 in invrs_tau_wpxp calculation - Reversed accidental changes to input_misc/tuner/error_four_cases.in 2023-11-14 15:39:40 -060055b6329613ecf69fa8cd632b83ddc2dbf60f6471BIT_CHANGING! Updated taus code calculations - CLUBB ticket #1115 (#1125)editmixing_length.F90bld/build-namelist12d89ea1e334b8f7ef9920a1846bef2198c48a521700014437000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comExit with warning in build-namelist if hemco_config_file or hemco_diagn_file are specified in user namelist. Current behavior in build-namelist enforces use of config files in case directory which are copied to run directory at submit time. User customization to user_nl_cam for the path of HEMCO config files will not take effect when running with GEOS-Chem chemistry, instead the user should edit or symlink from the files in the case directory similar to standalone GEOS-Chem operation. This commit adds a check in build-namelist for this customization and aborts with error to warn user that this is unsupported. Signed-off-by: Haipeng Lin <hplin@seas.harvard.edu> 2023-11-14 21:13:57 -050012d89ea1e334b8f7ef9920a1846bef2198c48a52Exit with warning in build-namelist if hemco_config_file or hemco_diagn_file are specified in user namelist.editbld/build-namelistbld/build-namelist5c048af25496932af3fd43cbfd94cfa63b20611b1700078927000http://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linjimmie.lin@gmail.comFix typo; indent with spaces 2023-11-15 15:08:47 -05005c048af25496932af3fd43cbfd94cfa63b20611bFix typo; indent with spaceseditbld/build-namelistExternals.cfgc268c64c58c8de47b35a60efeb6c21eea67fdfe11700089029000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to match cesm2_3_alpha16g 2023-11-15 15:57:09 -0700c268c64c58c8de47b35a60efeb6c21eea67fdfe1Update externals to match cesm2_3_alpha16geditExternals.cfgExternals.cfga842526658891eb34d2070d9a95b46bb579657f11700154846000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ccs_config external 2023-11-16 10:14:06 -0700a842526658891eb34d2070d9a95b46bb579657f1Update ccs_config externaleditExternals.cfgsrc/physics/cosp2/Makefile.in07359951bcf09a31bdb796dbd88fbad9ab5a73321700159203000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix COSP Makefile paths. 2023-11-16 11:26:43 -070007359951bcf09a31bdb796dbd88fbad9ab5a7332Fix COSP Makefile paths.editsrc/physics/cosp2/Makefile.inbld/namelist_files/geoschem_master_aer_wetdep_list.xmlbld/build-namelistbld/namelist_files/mozart_master_aer_drydep_list.xmlbld/namelist_files/geoschem_master_gas_drydep_list.xmlbld/namelist_files/master_gas_wetdep_list.xmlbld/namelist_files/mozart_master_aer_wetdep_list.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xmlbld/namelist_files/master_aer_drydep_list.xmlbld/namelist_files/mozart_master_gas_drydep_list.xmlbld/namelist_files/master_aer_wetdep_list.xmlbld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/mozart_master_gas_wetdep_list.xmlbld/perl5lib/Build/ChemNamelist.pmbld/namelist_files/geoschem_master_gas_wetdep_list.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/geoschem_master_aer_drydep_list.xmlbld/namelist_files/master_gas_drydep_list.xmlcc85a5be56669162cecee534ab966625fb2604f81700165289000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduSplit master deposition lists into two: mozart and geoschem Deposition lists are no longer stored in GEOS-Chem use case files. Set_dep_lists now takes chem as an argument and picks the appropriate master deposition list file to use, either Mozart or GEOS-Chem. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-11-16 13:08:09 -0700cc85a5be56669162cecee534ab966625fb2604f8Split master deposition lists into two: mozart and geoschemaddbld/namelist_files/mozart_master_aer_drydep_list.xmldeletebld/namelist_files/master_gas_wetdep_list.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmladdbld/namelist_files/mozart_master_gas_drydep_list.xmldeletebld/namelist_files/master_aer_wetdep_list.xmleditbld/namelist_files/use_cases/hist_geoschem.xmladdbld/namelist_files/mozart_master_gas_wetdep_list.xmleditbld/perl5lib/Build/ChemNamelist.pmaddbld/namelist_files/mozart_master_aer_wetdep_list.xmladdbld/namelist_files/geoschem_master_aer_drydep_list.xmladdbld/namelist_files/geoschem_master_gas_drydep_list.xmleditbld/build-namelistdeletebld/namelist_files/master_aer_drydep_list.xmleditbld/namelist_files/use_cases/2000_geoschem.xmleditbld/namelist_files/use_cases/2010_geoschem.xmldeletebld/namelist_files/master_gas_drydep_list.xmladdbld/namelist_files/geoschem_master_aer_wetdep_list.xmladdbld/namelist_files/geoschem_master_gas_wetdep_list.xmlcime_config/SystemTests/tmc.pyca86d0fdb61a5cc261c7fbb3bda381e382924bef1700169589000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing TMC tests 2023-11-16 14:19:49 -0700ca86d0fdb61a5cc261c7fbb3bda381e382924befFix failing TMC testseditcime_config/SystemTests/tmc.pybld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/namelist_definition.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/hist_geoschem.xmldcc7e204afa92c52ce94be22dcf2d4d3147b67941700173162000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRevert dep_data_file input_pathname to "abs"; use new file for geoschem Previously the dep_data_file default for GEOS-Chem was not actually being used due to inclusion in the use case files. This let a bug go under the radar that dep_data_file input_pathname="abs" was removed from the namelist definitions, meaning the configured inputdata path would not be used as a prefix to whatever dep_data_file was set as. This allowed GEOS-Chem compsets to work since the full path was in the use case files, but it resulted in non-GEOS-Chem compsets failing due to an incomplete path for the deposition netcdf file containing Henry's Law coeffs et al. This update restores using inputdata path as a prefix to dep_data_file, and so fixes the non-GEOS-Chem compsets. It also removes the setting of dep_data_file in the GEOS-Chem compsets and updates the filename in the namelist defaults for dep_data_file if using GEOS-Chem. GEOS-Chem compsets will not work until someone at NCAR moves the file to the target inputdata directory. The request to do this has been made. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2023-11-16 15:19:22 -0700dcc7e204afa92c52ce94be22dcf2d4d3147b6794Revert dep_data_file input_pathname to "abs"; use new file for geoschemeditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/use_cases/2000_geoschem.xmldoc/ChangeLog5888903ea6158488314b8789236637e761e932901700173844000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate ChangeLog. 2023-11-16 15:30:44 -07005888903ea6158488314b8789236637e761e93290Update ChangeLog.editdoc/ChangeLogadvance_clubb_core_module.F90mixing_length.F90advance_helper_module.F9071caa87dc4bf283982e72d7a5d548f0e19d36ca71700177490000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded non-trapezoidal zm interpolation for cloud_frac (#1127) - Added a calculation for `cloud_frac_zm` when `l_call_pdf_closure_twice=false` and `l_trapezoidal_rule_zt=false` This is BIT_CHANGING if `l_call_pdf_closure_twice=false` and `l_trapezoidal_rule_zt=false` since, in that case, `cloud_frac_zm` is now nonzero. - Some minor formatting fixes - Some minor fixes to pyplotgen's source code - Added `a3_coef_min` to Lscale tunable_parameters.in 2023-11-16 17:31:30 -060071caa87dc4bf283982e72d7a5d548f0e19d36ca7Added non-trapezoidal zm interpolation for cloud_frac (#1127)editadvance_clubb_core_module.F90editadvance_helper_module.F90editmixing_length.F90cime_config/config_pes.xml359360cbb5e8367237b0652b2cfab799673183c21700179220000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate PE layouts for derecho 2023-11-16 17:00:20 -0700359360cbb5e8367237b0652b2cfab799673183c2Update PE layouts for derechoeditcime_config/config_pes.xmlExternals.cfg981b95a4576af3680bcd19e35d229a6e075e15251700241815000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduback off ccs_config external 2023-11-17 10:23:35 -0700981b95a4576af3680bcd19e35d229a6e075e1525back off ccs_config externaleditExternals.cfgcime_config/config_pes.xmlc8757122debc9593f7612e29109bd71f9fa494d91700259471000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing derecho test 2023-11-17 15:17:51 -0700c8757122debc9593f7612e29109bd71f9fa494d9Fix failing derecho testeditcime_config/config_pes.xmldoc/ChangeLog_template9c482b3898ff1c292ef752fcd293b078b9b7f8bb1700262700000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd derecho testing to ChangeLog template 2023-11-17 16:11:40 -07009c482b3898ff1c292ef752fcd293b078b9b7f8bbAdd derecho testing to ChangeLog templateeditdoc/ChangeLog_templatedoc/ChangeLog4cf858194ebaaa4532297d449c54615660b9d57d1700368423000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_136 2023-11-18 21:33:43 -07004cf858194ebaaa4532297d449c54615660b9d57dUpdate ChangeLog for cam6_3_136editdoc/ChangeLogsrc/control/cam_history.F90bld/namelist_files/namelist_definition.xml4ac02a1e1be8caea7de6f6ca1fe25f1f6f1717321700592896000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd namelist control for nstep==0 output 2023-11-21 13:54:56 -05004ac02a1e1be8caea7de6f6ca1fe25f1f6f171732add namelist control for nstep==0 outputeditbld/namelist_files/namelist_definition.xmleditsrc/control/cam_history.F90bld/namelist_files/namelist_defaults_cam.xmlbld/build-namelistf4609ddd4c67d879f8d9d4a361c38848810fc84b1700620475000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduaircraft emissions for LT and MT compsets modified: bld/build-namelist modified: bld/namelist_files/namelist_defaults_cam.xml 2023-11-21 19:34:35 -0700f4609ddd4c67d879f8d9d4a361c38848810fc84baircraft emissions for LT and MT compsetseditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clmcime_config/config_pes.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cpl85a3beb0d211e60e68b727f7ab16cb218a998d961700667292000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduderecho pelayouts for ne30 waccm and camchem modified: cime_config/config_pes.xml modified: cime_config/testdefs/testlist_cam.xml deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commands deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cam deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clm deleted: cime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cpl 2023-11-22 08:34:52 -070085a3beb0d211e60e68b727f7ab16cb218a998d96derecho pelayouts for ne30 waccm and camchemdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_clmeditcime_config/config_pes.xmleditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_wcm_ne30/user_nl_cplbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xmlcime_config/config_pes.xmlbld/namelist_files/use_cases/waccm_ma_2000_cam6.xml2e724af7256e7ca8c7d1897491d52c2e2ee174351700679342000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edumore derecho pelayouts changes for waccm(x) and camchem modified: bld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xml modified: bld/namelist_files/use_cases/waccm_ma_2000_cam6.xml modified: cime_config/config_pes.xml 2023-11-22 11:55:42 -07002e724af7256e7ca8c7d1897491d52c2e2ee17435more derecho pelayouts changes for waccm(x) and camchemeditbld/namelist_files/use_cases/waccm_ma_2000_cam6.xmleditbld/namelist_files/use_cases/sd_waccm_tsmlt_cam6.xmleditcime_config/config_pes.xmlsrc/physics/cam/chem_surfvals.F90src/physics/cam/physpkg.F90src/dynamics/eul/iop.F90src/dynamics/se/se_single_column_mod.F90src/dynamics/se/stepon.F90src/dynamics/eul/stepon.F90src/dynamics/eul/dyn_grid.F90src/dynamics/eul/scmforecast.F90src/physics/cam/phys_grid.F90src/dynamics/eul/dp_coupling.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/check_energy.F90src/infrastructure/phys_grid.F90src/control/scamMod.F90src/dynamics/se/apply_iop_forcing.F90src/dynamics/eul/dyn_comp.F90f202756e1a30b4c705742021db6ff6341725c5a11701018774000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduscam updates 2023-11-26 10:12:54 -0700f202756e1a30b4c705742021db6ff6341725c5a1scam updateseditsrc/dynamics/eul/dyn_grid.F90editsrc/dynamics/eul/dp_coupling.F90editsrc/control/scamMod.F90editsrc/dynamics/eul/stepon.F90editsrc/physics/cam/check_energy.F90editsrc/physics/cam/physpkg.F90editsrc/physics/cam/chem_surfvals.F90editsrc/physics/cam/phys_grid.F90editsrc/dynamics/eul/dyn_comp.F90editsrc/dynamics/eul/iop.F90editsrc/dynamics/se/se_single_column_mod.F90editsrc/dynamics/se/stepon.F90editsrc/dynamics/eul/scmforecast.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/infrastructure/phys_grid.F90editsrc/dynamics/se/apply_iop_forcing.F90editsrc/dynamics/se/dyn_comp.F90Externals.cfge4f97ea6e6444ef5e5d760b9240e76f987dfc3a41701023933000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduexternal updates for scam_dev 6_3_136 2023-11-26 11:38:53 -0700e4f97ea6e6444ef5e5d760b9240e76f987dfc3a4external updates for scam_dev 6_3_136editExternals.cfgExternals.cfg64aa11ea2b796723b21e1691fdd0447d0b1d1e921701024082000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edumissed cice external update for scam 2023-11-26 11:41:22 -070064aa11ea2b796723b21e1691fdd0447d0b1d1e92missed cice external update for scameditExternals.cfgExternals.cfgb6ee97c9b358fcb8fcff7f7ea04986cb4463d92e1701026837000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduscam se update 2023-11-26 12:27:17 -0700b6ee97c9b358fcb8fcff7f7ea04986cb4463d92escam se updateeditExternals.cfgbld/namelist_files/namelist_definition.xml809e76f274ccf340cbe86aa7b8e3bc1f6c096c911701098309000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate description of mpas_cam_coef Better describe how the damping is applied and interacts with mpas_cam_damping_levels 2023-11-27 08:18:29 -0700809e76f274ccf340cbe86aa7b8e3bc1f6c096c91Update description of mpas_cam_coefeditbld/namelist_files/namelist_definition.xmlsrc/dynamics/mpas/dyn_comp.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml59ccc83c84558247c521224432be68b61ec485f31701098564000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduSet mpas_cam_damping_levels default to 3, update description 2023-11-27 08:22:44 -070059ccc83c84558247c521224432be68b61ec485f3Set mpas_cam_damping_levels default to 3, update descriptioneditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmleditsrc/dynamics/mpas/dyn_comp.F90cime_config/testdefs/testmods_dirs/cam/nudging/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam5_port_ne30/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam6_port_f09/user_nl_camcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam5_port_f45/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam4_port5d/user_nl_camcime_config/testdefs/testmods_dirs/cam/scmarm/user_nl_camcime_config/testdefs/testmods_dirs/cam/cam4_port/user_nl_camcime_config/testdefs/testmods_dirs/cam/scm_prep_c6/user_nl_camcime_config/testdefs/testmods_dirs/cam/scm_prep/user_nl_cam4ebbafb61825cedf13e8083655073e721eb713a41701099760000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduwrite nstep0 for tests w/ multiple timesamples per file 2023-11-27 08:42:40 -07004ebbafb61825cedf13e8083655073e721eb713a4write nstep0 for tests w/ multiple timesamples per fileeditcime_config/testdefs/testmods_dirs/cam/cam4_port5d/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/nudging/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam5_port_ne30/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scm_prep_c6/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scm_prep/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/scmarm/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam6_port_f09/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam4_port/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/cam5_port_f45/user_nl_camsrc/dynamics/mpas/dyn_comp.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xml91d9f53d11e5581d12ed447ddd057c850319e2c01701109742000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduDefault mpas_cam_damping_levels to 0 This makes it consistent with mpas_cam_coef: the associated damping is off by default and both variables would need to be changed to enable it. 2023-11-27 11:29:02 -070091d9f53d11e5581d12ed447ddd057c850319e2c0Default mpas_cam_damping_levels to 0editbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/mpas/dyn_comp.F90doc/ChangeLog02083058e82cae73b0e2b365bb6d78f6d2cf6f4f1701112465000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry 2023-11-27 14:14:25 -050002083058e82cae73b0e2b365bb6d78f6d2cf6f4fstart ChangeLog entryeditdoc/ChangeLogsrc/control/cam_history.F90d92847f55668940cb06b74fb7b31007559c768101701123605000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove check for "FV only" zonal mean fields 2023-11-27 17:20:05 -0500d92847f55668940cb06b74fb7b31007559c76810remove check for "FV only" zonal mean fieldseditsrc/control/cam_history.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_cam268f40b350d44ea3ba550b8217be633d00df55ed1701127119000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUse mpas_cam_damping in F2000climo mpasa480 grid aux_cam test To ensure the absorbing layer code is tested going forward, the F2000climo aux_cam test using the mpasa480_mpasa480 grid has been modified to turn on the damping associated with mpas_cam_coef and mpas_cam_damping_levels (in addition to the existing Rayleigh damping). 2023-11-27 16:18:39 -0700268f40b350d44ea3ba550b8217be633d00df55edUse mpas_cam_damping in F2000climo mpasa480 grid aux_cam testeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_camdoc/ChangeLog1158114725019cb2bff28eacc67dba130711c50f1701133185000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduCorrect ChangeLog order after merging cam_development I buried my own ChangeLog entry during the last merge, this moves it to the top 2023-11-27 17:59:45 -07001158114725019cb2bff28eacc67dba130711c50fCorrect ChangeLog order after merging cam_developmenteditdoc/ChangeLogtest/system/archive_baseline.sh8e981a7bc1862f987c2ca8b80044590d57faba361701133238000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduChange derecho baselinedir in archive_baselines.sh 2023-11-27 18:00:38 -07008e981a7bc1862f987c2ca8b80044590d57faba36Change derecho baselinedir in archive_baselines.shedittest/system/archive_baseline.shbld/namelist_files/use_cases/waccmx_ma_2000_cam6.xmlb08765fd3540962d48bd6bdbb532e8f7a4d670db1701190714000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumodify waccmx use case file to only add zonal mean fields for FV 2023-11-28 11:58:34 -0500b08765fd3540962d48bd6bdbb532e8f7a4d670dbmodify waccmx use case file to only add zonal mean fields for FVeditbld/namelist_files/use_cases/waccmx_ma_2000_cam6.xmlmixing_length.F9046dce38d9a340446c91e745aeb1cc059437e2d951701198848000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduRe-adjusted cap for invrs_tau_wpxp in src/CLUBB_core/mixing_length.F90 BIT_CHANGING! CLUBB ticket #1115 2023-11-28 13:14:08 -060046dce38d9a340446c91e745aeb1cc059437e2d95Re-adjusted cap for invrs_tau_wpxp in src/CLUBB_core/mixing_length.F90editmixing_length.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/shell_commands24946e737e1893cdef05a6e44e245bc7cb0b8b5d1701221231000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove unneeded lnd files from mpas testmods 2023-11-28 20:27:11 -050024946e737e1893cdef05a6e44e245bc7cb0b8b5dremove unneeded lnd files from mpas testmodseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/shell_commandseditcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa120/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/user_nl_clmeditcime_config/testdefs/testmods_dirs/cam/outfrq1d_physgrid_tem_mpasa120_wcmsc/shell_commandseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mpasa480/shell_commandsdoc/ChangeLog6ae06beb043cd5271d6b1d9bab3002d0b66b709a1701282057000http://carson.math.uwm.edu/jenkins/user/gdickergdickergdicker@ucar.eduUpdate ChangeLog for cam6_3_137 Add date, tag, reviewers, final test results, etc 2023-11-29 11:20:57 -07006ae06beb043cd5271d6b1d9bab3002d0b66b709aUpdate ChangeLog for cam6_3_137editdoc/ChangeLogsrc/control/cam_history.F90d37e8c40eb87928848b73d36909da287be5f0b2f1701289950000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edualways create instantaneous file; write time-dependent fields to inst. file only 2023-11-29 13:32:30 -0700d37e8c40eb87928848b73d36909da287be5f0b2falways create instantaneous file; write time-dependent fields to inst. file onlyeditsrc/control/cam_history.F90src/control/cam_history.F9013dd76d1e19df61ce25c948795df94d3a87fb3541701290138000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduaddress reviewer comments 2023-11-29 13:35:38 -070013dd76d1e19df61ce25c948795df94d3a87fb354address reviewer commentseditsrc/control/cam_history.F90cime_config/testdefs/testlist_cam.xmlcime_config/config_pes.xmle6325feddbcf19c0dcf24f4141a95c8d5fc0c9a51701365609000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduderecho tests and pe layout modified: cime_config/config_pes.xml modified: cime_config/testdefs/testlist_cam.xml 2023-11-30 10:33:29 -0700e6325feddbcf19c0dcf24f4141a95c8d5fc0c9a5derecho tests and pe layouteditcime_config/testdefs/testlist_cam.xmleditcime_config/config_pes.xmlcime_config/testdefs/testlist_cam.xmldoc/ChangeLog03f8695318b3c925cc7168fcdc4ac8c94e748ab11701374287000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduremove derecho tests; ChangeLog draft 2023-11-30 12:58:07 -070003f8695318b3c925cc7168fcdc4ac8c94e748ab1remove derecho tests; ChangeLog drafteditcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLogdoc/ChangeLog791855a117a2791d5985f20df8bc5d52833ff5a01701375202000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-11-30 13:13:22 -0700791855a117a2791d5985f20df8bc5d52833ff5a0ChangeLog updateeditdoc/ChangeLogdoc/ChangeLogb84b58f2484ee22c9d6cc85001ea35f7470c2f7c1701436444000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-01 06:14:04 -0700b84b58f2484ee22c9d6cc85001ea35f7470c2f7cChangeLog updateeditdoc/ChangeLogdoc/ChangeLog2e1546e8dcfbfde25b6d547beaabda59257dc67b1701449375000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2023-12-01 09:49:35 -07002e1546e8dcfbfde25b6d547beaabda59257dc67bChangeLog drafteditdoc/ChangeLogdoc/ChangeLoge520a5136df683d38950dfbf84808052365768001701471077000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog Update 2023-12-01 15:51:17 -0700e520a5136df683d38950dfbf8480805236576800ChangeLog Updateeditdoc/ChangeLogdoc/ChangeLog027a779f1dbbeaa934085d188247678d14ab5cc61701471248000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-01 15:54:08 -0700027a779f1dbbeaa934085d188247678d14ab5cc6ChangeLog updateeditdoc/ChangeLogdoc/ChangeLog3570ddc985618739bc32d663fbe4a95853f490001701471967000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-01 16:06:07 -07003570ddc985618739bc32d663fbe4a95853f49000ChangeLog updateeditdoc/ChangeLogdoc/ChangeLogcd560943ef40e800be0dbed86c9fef604d3308541701787489000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog for misc PR 2023-12-05 09:44:49 -0500cd560943ef40e800be0dbed86c9fef604d330854start ChangeLog for misc PReditdoc/ChangeLogcime_config/config_tests.xmlcime_config/buildnml414935b858c1b34034c2253e1d68a574199263ea1701788578000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix single executable plb test 2023-12-05 10:02:58 -0500414935b858c1b34034c2253e1d68a574199263eafix single executable plb testeditcime_config/config_tests.xmleditcime_config/buildnmlsrc/control/cam_history.F9039ca24763f42c213c4e92417a3e07d1a6d5e52781701799078000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.educalculate midpoint date and datesec for accumulated file 2023-12-05 10:57:58 -070039ca24763f42c213c4e92417a3e07d1a6d5e5278calculate midpoint date and datesec for accumulated fileeditsrc/control/cam_history.F90cime_config/SystemTests/sct.pyde6c33aaa737b26dd9232d3c52181699d1b58a601701814375000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.edufix sct tests 2023-12-05 15:12:55 -0700de6c33aaa737b26dd9232d3c52181699d1b58a60fix sct testseditcime_config/SystemTests/sct.pydoc/ChangeLogb32b71e117c38f6155a36fe67af5f4f75ec3d7a31701820437000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduinitial changelog 2023-12-05 16:53:57 -0700b32b71e117c38f6155a36fe67af5f4f75ec3d7a3initial changelogeditdoc/ChangeLogdoc/ChangeLog75b5770b17339df18a300c2f806d06887f6a24d21701823718000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2023-12-05 19:48:38 -050075b5770b17339df18a300c2f806d06887f6a24d2update ChangeLogeditdoc/ChangeLogsrc/physics/cam/cam_diagnostics.F90src/physics/rrtmg/rrtmg_state.F90src/physics/spcam/spcam_drivers.F90src/physics/cam/vertical_diffusion.F90src/physics/waccm/mo_aurora.F901f8332c282879f87b87e5eb306252853a89e7b451701827120000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix several outfld calls 2023-12-05 20:45:20 -05001f8332c282879f87b87e5eb306252853a89e7b45fix several outfld callseditsrc/physics/cam/cam_diagnostics.F90editsrc/physics/cam/vertical_diffusion.F90editsrc/physics/spcam/spcam_drivers.F90editsrc/physics/rrtmg/rrtmg_state.F90editsrc/physics/waccm/mo_aurora.F90src/control/cam_history.F906dc3aedbf017c94277d9b40bf0e76bf354a7669d1701827303000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix for SILHS history output 2023-12-05 20:48:23 -05006dc3aedbf017c94277d9b40bf0e76bf354a7669dfix for SILHS history outputeditsrc/control/cam_history.F90doc/ChangeLog31440539172d9fca51ad456a2803e19954369ec31701879671000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2023-12-06 11:21:11 -050031440539172d9fca51ad456a2803e19954369ec3update ChangeLogeditdoc/ChangeLogdoc/ChangeLog6c59437f1c5290c55ff545a96e132cb301f622cd1701909267000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduupdated changelog 2023-12-06 17:34:27 -07006c59437f1c5290c55ff545a96e132cb301f622cdupdated changelogeditdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mee_fluxes/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_cospsathist/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s/user_nl_camcime_config/testdefs/testmods_dirs/cam/reduced_hist1d/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq3s_diags/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_apmee/user_nl_camdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/outfrq3h/user_nl_camdb4ffb66192d4273b6ec471e05ffee98b82483701701976271000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduwrite nstep0 from more tests 2023-12-07 14:11:11 -0500db4ffb66192d4273b6ec471e05ffee98b8248370write nstep0 from more testseditcime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mee_fluxes/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s_cospsathist/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3h/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq3s_diags/user_nl_cameditdoc/ChangeLogeditcime_config/testdefs/testmods_dirs/cam/outfrq9s_apmee/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/reduced_hist1d/user_nl_camdoc/ChangeLogdoc/ChangeLog_template28622797c16542cc8c1c1bf98eec63803d56a5171701976681000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog and ChangeLog_template 2023-12-07 14:18:01 -050028622797c16542cc8c1c1bf98eec63803d56a517update ChangeLog and ChangeLog_templateeditdoc/ChangeLogeditdoc/ChangeLog_templatesrc/dynamics/se/stepon.F90src/dynamics/se/dycore/fvm_mapping.F90870a6a273a58ab5259d357bfb46f2e8decd2f6b21701986865000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edureduce memory footprint when writing CSLAM IC files modified: src/dynamics/se/dycore/fvm_mapping.F90 modified: src/dynamics/se/stepon.F90 2023-12-07 15:07:45 -0700870a6a273a58ab5259d357bfb46f2e8decd2f6b2reduce memory footprint when writing CSLAM IC fileseditsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/stepon.F90bld/build-namelist3fe3c8616c6526b946c3f186e1073529405b42e71701991681000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFix for FSCAM 2023-12-07 16:28:01 -07003fe3c8616c6526b946c3f186e1073529405b42e7Fix for FSCAMeditbld/build-namelistExternals_CAM.cfg3e7e3ea2f4746570ff4cc8b2dc80857d981d44e31701992309000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduPoint to updated PUMAS external 2023-12-07 16:38:29 -07003e7e3ea2f4746570ff4cc8b2dc80857d981d44e3Point to updated PUMAS externaleditExternals_CAM.cfgadvance_wp2_wp3_module.F9022b99ad5e75002985bbb982a508764c345927aec1702052124000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comAdding boundary conditions for the wp3_term_ta_ADG1_lhs subroutine. The value of wp3_zm at the model lower and upper boundaries is now assumed to be 0 for simplicity and conservation. 2023-12-08 10:15:24 -060022b99ad5e75002985bbb982a508764c345927aecAdding boundary conditions for the wp3_term_ta_ADG1_lhs subroutine.editadvance_wp2_wp3_module.F90advance_wp2_wp3_module.F90961f848884a3fce181c64c6c0ddc3fa73c33120e1702052124000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comFor single loop vectors, removing the "collapse(2)" from the acc statements. This commit is not bit changing, but the previous commit to this branch was BIT_CHANGING:902d6caed8a4533f59f4165106276959b4f90895 2023-12-08 10:15:24 -0600961f848884a3fce181c64c6c0ddc3fa73c33120eFor single loop vectors, removing the "collapse(2)" from the acc statements.editadvance_wp2_wp3_module.F90doc/ChangeLog29b108038be4252733dae926e76863a8cbaf958c1702052170000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2023-12-08 11:16:10 -050029b108038be4252733dae926e76863a8cbaf958cupdate ChangeLogeditdoc/ChangeLogsrc/dynamics/se/stepon.F90b03be228bb40e751370fb4d191fb6d5ec71ca2dc1702329723000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educheck allocate status modified: src/dynamics/se/stepon.F90 2023-12-11 14:22:03 -0700b03be228bb40e751370fb4d191fb6d5ec71ca2dccheck allocate statuseditsrc/dynamics/se/stepon.F90mixing_length.F90advance_clubb_core_module.F90stats_variables.F90stats_zm_module.F903ba52c6cb91becf07a3cd181ae018428675298bd1702424778000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comAdded new Brunt-Väisälä frequency plots to pyplotgen's VariableGroupTaus CLUBB ticket #1132, BIT_CHANGING because new output fields were added - Added 3 new Brunt-Väisälä output fields: - bv_freq_sqd_smth: The smoothed bv_mixed which is used to calculate the invrs_taus - bv_freq_pos: The positive part of the sqrt of bv_freq_sqd_smth - bv_freq_out_cloud: The out-of-cloud part of bv_freq_pos - Added the plots of those fields to VariableGroupTaus 2023-12-12 17:46:18 -06003ba52c6cb91becf07a3cd181ae018428675298bdAdded new Brunt-Väisälä frequency plots to pyplotgen's VariableGroupTauseditadvance_clubb_core_module.F90editstats_variables.F90editstats_zm_module.F90editmixing_length.F90advance_clubb_core_module.F9059de6e143a1bdbf3e43d13f67d71deb63affdde21702425732000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdds commas to fix bug 2023-12-12 18:02:12 -060059de6e143a1bdbf3e43d13f67d71deb63affdde2Adds commas to fix bugeditadvance_clubb_core_module.F90src/dynamics/se/stepon.F90src/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/fvm_mapping.F90007fee7f950a0a600597a81d1f105d96ad482ae51702482350000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimplement fvm2phys mapping for single tracer modified: src/dynamics/se/dycore/fvm_mapping.F90 modified: src/dynamics/se/dycore/fvm_mod.F90 modified: src/dynamics/se/stepon.F90 2023-12-13 08:45:50 -0700007fee7f950a0a600597a81d1f105d96ad482ae5implement fvm2phys mapping for single tracereditsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mod.F90editsrc/dynamics/se/stepon.F90src/physics/cam/convect_shallow.F90src/physics/cam/zm_conv_intr.F902ed878354b37f5ebd5e946870a945bc9a8b6fb601702497540000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix compilation error 2023-12-13 12:59:00 -07002ed878354b37f5ebd5e946870a945bc9a8b6fb60Fix compilation erroreditsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90doc/ChangeLogb953252e150c5b6af0fb8e97556fb43b98513f381702510553000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2023-12-13 18:35:53 -0500b953252e150c5b6af0fb8e97556fb43b98513f38update ChangeLogeditdoc/ChangeLogbld/configureExternals_CAM.cfgsrc/physics/spcam/crmclouds_camaerosols.F90src/physics/cam/convect_shallow.F90src/physics/cam/zm_conv_intr.F90caa528d6ffffd4191873451ec439713eee0cdfbc1702597772000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress some reviewer comments 2023-12-14 16:49:32 -0700caa528d6ffffd4191873451ec439713eee0cdfbcaddress some reviewer commentseditExternals_CAM.cfgeditbld/configureeditsrc/physics/cam/zm_conv_intr.F90editsrc/physics/spcam/crmclouds_camaerosols.F90editsrc/physics/cam/convect_shallow.F90bld/namelist_files/namelist_definition.xmlsrc/physics/cam_dev/micro_pumas_cam.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90cime_config/SystemTests/mgp.py67097c084c3525483e38a7606c91f0c9412dc6cc1702684164000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments 2023-12-15 16:49:24 -070067097c084c3525483e38a7606c91f0c9412dc6ccAddressing review commentseditcime_config/SystemTests/mgp.pyeditcime_config/testdefs/testlist_cam.xmleditsrc/physics/cam_dev/stochastic_tau_cam.F90editsrc/physics/cam_dev/stochastic_emulated_cam.F90editbld/namelist_files/namelist_definition.xmleditsrc/physics/cam_dev/micro_pumas_cam.F90src/physics/cam/gw_movmtn.F90src/physics/cam/gw_drag.F90507fe1819758470fc162a762bac48d03f78319201702934591000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduInitial add of moving mountain GW source 2023-12-18 14:23:11 -0700507fe1819758470fc162a762bac48d03f7831920Initial add of moving mountain GW sourceaddsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/gw_drag.F90diffusion.F9020d6130562d60f6c2c17972cdc5a81de5dacd8611702943185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comUpdating the code to set the bottom of the thermodynamic level grid for diffusion at thermodynamic level 2 -- the first level above the surface. This is being done in preparation for ghostless gridding. 2023-12-18 17:46:25 -060020d6130562d60f6c2c17972cdc5a81de5dacd861Updating the code to set the bottom of the thermodynamic level grid foreditdiffusion.F90advance_wp2_wp3_module.F90cebdb21aff77c08197f427a89df4712ee1fa5de01702943185000http://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffin31553422+bmg929@users.noreply.github.comCommit to enforce a fixed-point boundary condition of wp3=0 at thermodynamic level k = 2, the first above-ground thermodynamic level. This is being done in preparation for ghostless gridding. This commit is BIT_CHANGING. Results are much more similar to the previous results than using using zero-flux as the lower boundary condition for wp3. 2023-12-18 17:46:25 -0600cebdb21aff77c08197f427a89df4712ee1fa5de0Commit to enforce a fixed-point boundary condition of wp3=0 ateditadvance_wp2_wp3_module.F90doc/ChangeLogba8c4a0f2ba4eef3bd0fd09ecd01faf0bfe522981703011612000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2023-12-19 11:46:52 -0700ba8c4a0f2ba4eef3bd0fd09ecd01faf0bfe52298ChangeLog drafteditdoc/ChangeLogdoc/ChangeLog298a6ccdcd988fd63a776fd1802d14bef14d16e41703024045000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-19 15:14:05 -0700298a6ccdcd988fd63a776fd1802d14bef14d16e4ChangeLog updateeditdoc/ChangeLogsrc/control/camsrfexch.F90src/cpl/nuopc/atm_import_export.F90src/physics/cam/cam_diagnostics.F90a8117555b2accc3afb98e8da2dd9020ce4dd8c5b1703085312000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduAdd ability to output UGUST variable from coupler. 2023-12-20 08:15:12 -0700a8117555b2accc3afb98e8da2dd9020ce4dd8c5bAdd ability to output UGUST variable from coupler.editsrc/cpl/nuopc/atm_import_export.F90editsrc/physics/cam/cam_diagnostics.F90editsrc/control/camsrfexch.F90doc/ChangeLog65aedbbc7379cd778065a82991766929029e10be1703086351000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-20 08:32:31 -070065aedbbc7379cd778065a82991766929029e10beChangeLog updateeditdoc/ChangeLogdoc/ChangeLog21af8420ebd37549a628cbd56fcd40c444b0267b1703087297000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2023-12-20 08:48:17 -070021af8420ebd37549a628cbd56fcd40c444b0267bChangeLog updateeditdoc/ChangeLogadvance_wp2_wp3_module.F9039e110e1e0d3a674a66ff616a403f81f470fa8771703174134000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWith wp3 now being set to a fixed-point boundary condition value of 0 at the current thermodynamic level 2 (first t-lev above the surface), it is not necessary to loop over level 2 within the code for each wp3 term. This commit is BIT_CHANGING, but only for the wp3 budget terms (e.g. wp3_ta) in the zt output file at level k = 2. It doesn't change the actual answer. All other variables are bit-for-bit identical. 2023-12-21 09:55:34 -060039e110e1e0d3a674a66ff616a403f81f470fa877With wp3 now being set to a fixed-point boundary condition valueeditadvance_wp2_wp3_module.F90bld/namelist_files/namelist_defaults_cam.xmlc41dc27265ccae924bd173260ded18fe663859501703712070000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRevert to non-answer changing for cam_dev compsets 2023-12-27 14:21:10 -0700c41dc27265ccae924bd173260ded18fe66385950Revert to non-answer changing for cam_dev compsetseditbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/cam_diagnostics.F90d375f4dc36c2b5caa8d17b3be7a796b48aa82ec61704209064000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduFixing alignment issues 2024-01-02 08:24:24 -0700d375f4dc36c2b5caa8d17b3be7a796b48aa82ec6Fixing alignment issueseditsrc/physics/cam/cam_diagnostics.F90git_sparse_checkoutshow-tagsgit_setupf093a6ab2e0b101d01f8e2fdb51b94432fa69c681704218263000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edustart with basics 2024-01-02 10:57:43 -0700f093a6ab2e0b101d01f8e2fdb51b94432fa69c68start with basicsaddgit_setupaddgit_sparse_checkoutaddshow-tagscime_config/testdefs/testlist_cam.xmltest/system/test_driver.sh9743f9dbd58e9f30d661911e7a947a326dded7601704231963000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove cheyenne testing and make all cheyenne tests be derecho ones 2024-01-02 14:46:03 -07009743f9dbd58e9f30d661911e7a947a326dded760Remove cheyenne testing and make all cheyenne tests be derecho oneseditcime_config/testdefs/testlist_cam.xmledittest/system/test_driver.shdoc/ChangeLogbld/namelist_files/namelist_defaults_cam.xml616af59ca88bbcc5ef56f603d37ce8f52618362a1704233121000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog and remove comment 2024-01-02 15:05:21 -0700616af59ca88bbcc5ef56f603d37ce8f52618362aUpdate ChangeLog and remove commenteditdoc/ChangeLogeditbld/namelist_files/namelist_defaults_cam.xmldoc/ChangeLog2bb62a480a6237fd231337793e362e33b5d49ef81704233215000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduCorrect date for cam6_3_144 2024-01-02 15:06:55 -07002bb62a480a6237fd231337793e362e33b5d49ef8Correct date for cam6_3_144editdoc/ChangeLogtest/system/archive_baseline.sh3f02362404adfaf575b64ca103c765e888576d141704236446000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduremove cheyenne from archive_baselines 2024-01-02 16:00:46 -07003f02362404adfaf575b64ca103c765e888576d14remove cheyenne from archive_baselinesedittest/system/archive_baseline.shExternals.cfg8f6573db765daa31595197005e31fd2f2a5569af1704314604000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduUpdate CMEPS in Externals.cfg 2024-01-03 13:43:24 -07008f6573db765daa31595197005e31fd2f2a5569afUpdate CMEPS in Externals.cfgeditExternals.cfgbld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmlbld/build-namelist1d5007eb449e352a464489c8f857bfa34cc652131704315355000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUWM changes to namelist files for new clubb external 2024-01-03 13:55:55 -07001d5007eb449e352a464489c8f857bfa34cc65213UWM changes to namelist files for new clubb externaleditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmlcime_config/usermods_dirs/scam_cgilsS11/shell_commandssrc/dynamics/se/se_single_column_mod.F90src/control/ncdio_atm.F90src/dynamics/se/dyn_grid.F90bld/configurecime_config/usermods_dirs/scam_arm97/user_nl_camsrc/control/history_scam.F90cime_config/usermods_dirs/scam_arm95/user_nl_camsrc/dynamics/se/dyn_comp.F90cime_config/usermods_dirs/scam_atex/user_nl_camsrc/cpl/nuopc/atm_comp_nuopc.F90src/infrastructure/phys_grid.F90cime_config/usermods_dirs/scam_micre2017/shell_commandssrc/control/scamMod.F90cime_config/usermods_dirs/scam_arm97/shell_commandscime_config/usermods_dirs/scam_dycomsRF02/shell_commandscime_config/usermods_dirs/scam_bomex/shell_commandscime_config/usermods_dirs/scam_mandatory/shell_commandssrc/dynamics/eul/iop.F90cime_config/usermods_dirs/scam_twp06/shell_commandssrc/dynamics/eul/scmforecast.F90cime_config/usermods_dirs/scam_cgilsS12/shell_commandssrc/control/cam_comp.F90src/dynamics/eul/dp_coupling.F90src/control/history_defaults.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/dynamics/eul/diag_dynvar_ic.F90src/cpl/nuopc/atm_stream_ndep.F90cime_config/usermods_dirs/scam_cgilsS6/shell_commandscime_config/usermods_dirs/scam_cgilsS6/user_nl_camcime_config/usermods_dirs/scam_bomex/user_nl_camsrc/dynamics/se/apply_iop_forcing.F90cime_config/usermods_dirs/scam_twp06/user_nl_camsrc/control/cam_history.F90src/physics/cam_dev/physpkg.F90src/dynamics/se/stepon.F90src/physics/cam/clubb_intr.F90cime_config/usermods_dirs/scam_gateIII/user_nl_camsrc/utils/hybvcoord_mod.F90cime_config/usermods_dirs/scam_rico/user_nl_camcime_config/usermods_dirs/scam_togaII/shell_commandscime_config/usermods_dirs/scam_mpace/shell_commandssrc/dynamics/eul/dynpkg.F90cime_config/usermods_dirs/scam_micre2017/user_nl_camsrc/physics/cam/phys_grid.F90cime_config/usermods_dirs/scam_sparticus/shell_commandscime_config/usermods_dirs/scam_togaII/user_nl_camcime_config/usermods_dirs/scam_atex/shell_commandssrc/dynamics/eul/dyn_comp.F90cime_config/usermods_dirs/scam_dycomsRF01/shell_commandscime_config/usermods_dirs/scam_rico/shell_commandscime_config/usermods_dirs/scam_sparticus/user_nl_camsrc/physics/cam/physpkg.F90src/dynamics/eul/stepon.F90cime_config/usermods_dirs/scam_mpace/user_nl_camsrc/dynamics/eul/dyn_grid.F90cime_config/usermods_dirs/scam_cgilsS11/user_nl_camsrc/physics/cam/convect_shallow.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/eul/tfilt_massfix.F90cime_config/usermods_dirs/scam_cgilsS12/user_nl_camsrc/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/eul/restart_dynamics.F90src/physics/cam/check_energy.F90cime_config/usermods_dirs/scam_gateIII/shell_commandssrc/physics/cam/cam_diagnostics.F90cime_config/usermods_dirs/scam_dycomsRF01/user_nl_camcime_config/usermods_dirs/scam_arm95/shell_commandscime_config/usermods_dirs/scam_dycomsRF02/user_nl_cam5a9159a33f184f0e2cef578dd687c44817aca9d31704319502000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduscam se updates 2024-01-03 15:05:02 -07005a9159a33f184f0e2cef578dd687c44817aca9d3scam se updateseditcime_config/usermods_dirs/scam_arm97/shell_commandseditcime_config/usermods_dirs/scam_arm95/user_nl_cameditsrc/dynamics/eul/iop.F90editcime_config/usermods_dirs/scam_arm95/shell_commandseditcime_config/usermods_dirs/scam_micre2017/shell_commandseditsrc/dynamics/se/dyn_comp.F90editsrc/control/cam_comp.F90editsrc/control/scamMod.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editcime_config/usermods_dirs/scam_gateIII/shell_commandseditcime_config/usermods_dirs/scam_mpace/shell_commandsaddsrc/utils/hybvcoord_mod.F90editsrc/dynamics/eul/dynpkg.F90editcime_config/usermods_dirs/scam_mpace/user_nl_cameditsrc/dynamics/eul/tfilt_massfix.F90editcime_config/usermods_dirs/scam_rico/user_nl_cameditcime_config/usermods_dirs/scam_cgilsS6/shell_commandseditsrc/physics/cam/cam_diagnostics.F90editsrc/dynamics/eul/diag_dynvar_ic.F90editsrc/physics/cam_dev/physpkg.F90editcime_config/usermods_dirs/scam_cgilsS11/user_nl_cameditsrc/dynamics/eul/restart_dynamics.F90editcime_config/usermods_dirs/scam_cgilsS11/shell_commandseditcime_config/usermods_dirs/scam_twp06/shell_commandseditcime_config/usermods_dirs/scam_gateIII/user_nl_cameditsrc/control/history_scam.F90editcime_config/usermods_dirs/scam_bomex/shell_commandseditsrc/dynamics/se/se_single_column_mod.F90editcime_config/usermods_dirs/scam_dycomsRF02/shell_commandseditcime_config/usermods_dirs/scam_arm97/user_nl_cameditbld/configureeditcime_config/usermods_dirs/scam_sparticus/user_nl_cameditcime_config/usermods_dirs/scam_atex/user_nl_cameditsrc/dynamics/eul/scmforecast.F90editcime_config/usermods_dirs/scam_dycomsRF01/shell_commandseditsrc/control/ncdio_atm.F90editcime_config/usermods_dirs/scam_cgilsS12/shell_commandseditsrc/physics/cam/convect_shallow.F90editcime_config/usermods_dirs/scam_bomex/user_nl_cameditsrc/dynamics/eul/dyn_grid.F90editsrc/infrastructure/phys_grid.F90editcime_config/usermods_dirs/scam_cgilsS12/user_nl_cameditcime_config/usermods_dirs/scam_dycomsRF02/user_nl_cameditcime_config/usermods_dirs/scam_rico/shell_commandseditsrc/dynamics/se/apply_iop_forcing.F90editsrc/cpl/nuopc/atm_stream_ndep.F90editsrc/dynamics/eul/stepon.F90deletesrc/control/history_defaults.F90editsrc/physics/cam/check_energy.F90editcime_config/usermods_dirs/scam_sparticus/shell_commandseditsrc/cpl/nuopc/atm_comp_nuopc.F90editsrc/dynamics/eul/dp_coupling.F90editcime_config/usermods_dirs/scam_twp06/user_nl_cameditcime_config/usermods_dirs/scam_micre2017/user_nl_cameditsrc/dynamics/se/stepon.F90editsrc/physics/cam/phys_grid.F90editcime_config/usermods_dirs/scam_togaII/user_nl_cameditsrc/control/cam_history.F90editcime_config/usermods_dirs/scam_cgilsS6/user_nl_cameditsrc/dynamics/eul/dyn_comp.F90editcime_config/usermods_dirs/scam_dycomsRF01/user_nl_cameditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/physics/cam/physpkg.F90editbld/namelist_files/namelist_defaults_cam.xmleditcime_config/usermods_dirs/scam_togaII/shell_commandseditcime_config/usermods_dirs/scam_atex/shell_commandseditcime_config/usermods_dirs/scam_mandatory/shell_commandseditsrc/physics/cam/clubb_intr.F90git_setup.pymodules/__init__.pymodules/utils.pygit_sparse_checkoutgit_setupmodules/lstripreader.pyf530e88acee6e959e9345b35a7e00b71d81641bf1704327630000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumodule based method, sparse working 2024-01-03 17:20:30 -0700f530e88acee6e959e9345b35a7e00b71d81641bfmodule based method, sparse workingeditgit_setupaddmodules/lstripreader.pyaddgit_setup.pyaddmodules/__init__.pyaddmodules/utils.pyeditgit_sparse_checkoutadvance_xm_wpxp_module.F90clip_explicit.F90clubb_api_module.F90diagnose_correlations_module.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mixing_length.F90advance_xp2_xpyp_module.F90error_code.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90corr_varnce_module.F90precipitation_fraction.F90index_mapping.F90model_flags.F90numerical_check.F90output_netcdf.F90stat_file_module.F90sponge_layer_damping.F90array_index.F90saturation.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_zt_module.F90fill_holes.F90stats_zm_module.F90stats_clubb_utilities.F90sfc_varnce_module.F90parameters_model.F9069a0500429869014c93503d18cff3ccfd516dc6d1704332198000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comThreadpublic (#1133) * Initial threadprivate removals and simple changes. * model flags update, incomplete * Some updates, almost working * Added saturation_formula and l_host_applies_sfc_fluxes to clubb_config_flags * Accompanying changes to flags lists * Changes to corrrelation array setup * Adding more flag checking * Forgot to set l_host_applies_sfc_fluxes in initialize_clubb_config_flags_type and commit adding l_implemented to the argument loit * Adding saturation parameters to api * Most of the way through passing sclr_dim, hydromet_dim, edsclr_dim, and sclr_tol through arguemnt lists. Moved first_write breaking silhs stats aparently, and bit changing due to the way we were writing sclr_tol for cases that have sclr_dim=0 (arm different, gabls2 BFB). * Removing accidentally commited files. * Fixed silhs output, all cases BFB but sclr_tol is saved differently to stats files in cases where sclr_dim = 0, so this is bc also bc:fb20458d5212b007c79c17613201af637bbc3d7e since that introduced the difference. * Changing stats logicals back to false, only set to true for testing. So technically BIT_CHANGING * Starting array_vars changes. * No more global scalar indices * Starting to remove hydromet indices * Finished the annoying part with the microphysics interfaces. * No more global variables in array_index. All cases BFB relative to last commit. * No more global pdf_dim, Ncnp2_on_Ncnm2 now set via argument list, and added temporary hydromet_dim_glob because I thought it would fix a bug but it didn't, it might in the future though, so I left it in for now, it will be removed soon. * Added nan checking before overriding default value for Ncnp2_on_Ncnm2 * Finished hydromet_dim argument listing and removed global versions of it as well as sclr_dim, edsclr_dim, and sclr_tol. * open_netcdf_for_writing does nothing if nvars=0 for a stats file, which is understandable, but now that we call first_write immediately after we need that also to check for nvar=0 * Adding better error messages to stats_init * The nvidia compiler does not like zero size arrays. * Adding defaults for scalar arrays values in clubb driver, and adding an error check after calling stats_init. * Reverting accidental changes to clubb_thread_test * Changing name of scarr/scalar_array to sclr_idx and hydromet_array to hm_metadata * Adding new types to _api * Fixing erroneous name changes. * Fixing bug introduced in 65987c8a77496f7bb10bfd28717345b1f63de1b7 * Removing print * QuadTune: updates setup in order to read in 30x30 regional files automatically. For #910. * Updating the code to set the bottom of the thermodynamic level grid for diffusion at thermodynamic level 2 -- the first level above the surface. This is being done in preparation for ghostless gridding. * Commit to enforce a fixed-point boundary condition of wp3=0 at thermodynamic level k = 2, the first above-ground thermodynamic level. This is being done in preparation for ghostless gridding. This commit is bc. Results are much more similar to the previous results than using using zero-flux as the lower boundary condition for wp3. * With wp3 now being set to a fixed-point boundary condition value of 0 at the current thermodynamic level 2 (first t-lev above the surface), it is not necessary to loop over level 2 within the code for each wp3 term. This commit is BIT_CHANGING, but only for the wp3 budget terms (e.g. wp3_ta) in the zt output file at level k = 2. It doesn't change the actual answer. All other variables are bit-for-bit identical. * Removing omp parallel test line * Removing parameter declarion around l_quintic_poly_interp. Having this be a parameter causes bit changes when using -O2 --------- Co-authored-by: vlarson <vlarson@uwm.edu> Co-authored-by: bmg929 <bmg2@uwm.edu> 2024-01-03 19:36:38 -060069a0500429869014c93503d18cff3ccfd516dc6dThreadpublic (#1133)editindex_mapping.F90editsfc_varnce_module.F90editadvance_xp3_module.F90editstats_zt_module.F90editarray_index.F90editpdf_closure_module.F90editstats_zm_module.F90editadvance_xm_wpxp_module.F90editclip_explicit.F90editoutput_netcdf.F90editstat_file_module.F90editclubb_api_module.F90editdiagnose_correlations_module.F90editstats_clubb_utilities.F90editcorr_varnce_module.F90editfill_holes.F90editnumerical_check.F90editparameters_model.F90editmixing_length.F90editadvance_helper_module.F90editnew_hybrid_pdf_main.F90editmodel_flags.F90editsetup_clubb_pdf_params.F90editadvance_clubb_core_module.F90editerror_code.F90editadg1_adg2_3d_luhar_pdf.F90editprecipitation_fraction.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editsaturation.F90editsponge_layer_damping.F90silhs_api_module.F90silhs_importance_sample_module.F90transform_to_pdf_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F9014c8636ab5c46f3f20204fae38b1eeb765bc804c1704332198000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comThreadpublic (#1133) * Initial threadprivate removals and simple changes. * model flags update, incomplete * Some updates, almost working * Added saturation_formula and l_host_applies_sfc_fluxes to clubb_config_flags * Accompanying changes to flags lists * Changes to corrrelation array setup * Adding more flag checking * Forgot to set l_host_applies_sfc_fluxes in initialize_clubb_config_flags_type and commit adding l_implemented to the argument loit * Adding saturation parameters to api * Most of the way through passing sclr_dim, hydromet_dim, edsclr_dim, and sclr_tol through arguemnt lists. Moved first_write breaking silhs stats aparently, and bit changing due to the way we were writing sclr_tol for cases that have sclr_dim=0 (arm different, gabls2 BFB). * Removing accidentally commited files. * Fixed silhs output, all cases BFB but sclr_tol is saved differently to stats files in cases where sclr_dim = 0, so this is bc also bc:fb20458d5212b007c79c17613201af637bbc3d7e since that introduced the difference. * Changing stats logicals back to false, only set to true for testing. So technically BIT_CHANGING * Starting array_vars changes. * No more global scalar indices * Starting to remove hydromet indices * Finished the annoying part with the microphysics interfaces. * No more global variables in array_index. All cases BFB relative to last commit. * No more global pdf_dim, Ncnp2_on_Ncnm2 now set via argument list, and added temporary hydromet_dim_glob because I thought it would fix a bug but it didn't, it might in the future though, so I left it in for now, it will be removed soon. * Added nan checking before overriding default value for Ncnp2_on_Ncnm2 * Finished hydromet_dim argument listing and removed global versions of it as well as sclr_dim, edsclr_dim, and sclr_tol. * open_netcdf_for_writing does nothing if nvars=0 for a stats file, which is understandable, but now that we call first_write immediately after we need that also to check for nvar=0 * Adding better error messages to stats_init * The nvidia compiler does not like zero size arrays. * Adding defaults for scalar arrays values in clubb driver, and adding an error check after calling stats_init. * Reverting accidental changes to clubb_thread_test * Changing name of scarr/scalar_array to sclr_idx and hydromet_array to hm_metadata * Adding new types to _api * Fixing erroneous name changes. * Fixing bug introduced in 65987c8a77496f7bb10bfd28717345b1f63de1b7 * Removing print * QuadTune: updates setup in order to read in 30x30 regional files automatically. For #910. * Updating the code to set the bottom of the thermodynamic level grid for diffusion at thermodynamic level 2 -- the first level above the surface. This is being done in preparation for ghostless gridding. * Commit to enforce a fixed-point boundary condition of wp3=0 at thermodynamic level k = 2, the first above-ground thermodynamic level. This is being done in preparation for ghostless gridding. This commit is bc. Results are much more similar to the previous results than using using zero-flux as the lower boundary condition for wp3. * With wp3 now being set to a fixed-point boundary condition value of 0 at the current thermodynamic level 2 (first t-lev above the surface), it is not necessary to loop over level 2 within the code for each wp3 term. This commit is BIT_CHANGING, but only for the wp3 budget terms (e.g. wp3_ta) in the zt output file at level k = 2. It doesn't change the actual answer. All other variables are bit-for-bit identical. * Removing omp parallel test line * Removing parameter declarion around l_quintic_poly_interp. Having this be a parameter causes bit changes when using -O2 --------- Co-authored-by: vlarson <vlarson@uwm.edu> Co-authored-by: bmg929 <bmg2@uwm.edu> 2024-01-03 19:36:38 -060014c8636ab5c46f3f20204fae38b1eeb765bc804cThreadpublic (#1133)edittransform_to_pdf_module.F90editsilhs_importance_sample_module.F90editlatin_hypercube_driver_module.F90editoutput_2D_samples_module.F90editsilhs_api_module.F90src/physics/cam/clubb_intr.F904c2910912901810f3aab85dfc70ef384bb7b45551704332222000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comFirst commit to make compatible with latest clubb changes. 2024-01-03 19:37:02 -06004c2910912901810f3aab85dfc70ef384bb7b4555First commit to make compatible with latest clubb changes.editsrc/physics/cam/clubb_intr.F90src/physics/cam/physpkg.F90src/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F900ab05498ab58e8e66b45ba43afc92ced443f14521704332222000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comMore updates to make work with clubb change. 2024-01-03 19:37:02 -06000ab05498ab58e8e66b45ba43afc92ced443f1452More updates to make work with clubb change.editsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/physpkg.F90src/physics/cam/clubb_intr.F908db57f1ea3df8f66286d9e38bdd373f9d0ef43bf1704332222000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comHopefully final update to make work the clubb's threadpublic branch. Using 1 mpi proc we have achieved BFBness with or without silhs. 2024-01-03 19:37:02 -06008db57f1ea3df8f66286d9e38bdd373f9d0ef43bfHopefully final update to make work the clubb's threadpublic branch. Using 1 mpi proc we have achieved BFBness with or without silhs.editsrc/physics/cam/clubb_intr.F90src/physics/cam/physpkg.F90e5660df7b0139f84716119015996338670e3d25e1704332222000http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwm37674341+huebleruwm@users.noreply.github.comRemoving testing changes 2024-01-03 19:37:02 -0600e5660df7b0139f84716119015996338670e3d25eRemoving testing changeseditsrc/physics/cam/physpkg.F90git_setup.pymodules/gitinterface.pye0cf1ff87ad4ff09ad950d39d8777b2df377456e1704385793000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edunow works two ways 2024-01-04 09:29:53 -0700e0cf1ff87ad4ff09ad950d39d8777b2df377456enow works two wayseditgit_setup.pyaddmodules/gitinterface.pycorr_varnce_module.F906d345f45f5c0b3f99bd6b7c54cdf3b6c650943fa1704398011000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving awkward nan check in favor of a default for Ncnp2_on_Ncnm2 2024-01-04 13:53:31 -06006d345f45f5c0b3f99bd6b7c54cdf3b6c650943faRemoving awkward nan check in favor of a default for Ncnp2_on_Ncnm2editcorr_varnce_module.F90git_setup.pymodules/gitinterface.pyf36bc9a68a578667f83b59dbc339d96e6fdc69951704402225000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educomplete the tools 2024-01-04 14:03:45 -0700f36bc9a68a578667f83b59dbc339d96e6fdc6995complete the toolseditmodules/gitinterface.pyeditgit_setup.pysrc/physics/cam/gw_movmtn.F90src/physics/cam/gw_drag.F90991f67ae2333bb16aa4acf626ea39bd2f823a0871704402468000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduworked on outputs 2024-01-04 14:07:48 -0700991f67ae2333bb16aa4acf626ea39bd2f823a087worked on outputseditsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/gw_drag.F90src/physics/cam/gw_drag.F90877ea02bafc8ba12e99e5d1aef82c94b74a3e9d91704407780000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduworked more on outputs 2024-01-04 15:36:20 -0700877ea02bafc8ba12e99e5d1aef82c94b74a3e9d9worked more on outputseditsrc/physics/cam/gw_drag.F90git_setup.pymodules/gitinterface.py2beceaa56b02c1d607696a3d4259a54338214e351704408311000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumore fixes 2024-01-04 15:45:11 -07002beceaa56b02c1d607696a3d4259a54338214e35more fixeseditmodules/gitinterface.pyeditgit_setup.pygit_setup.pya3fcaf20dad5a7bcbd5c4e3dc0ac9169111724941704409144000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edusubmodule needs path not name 2024-01-04 15:59:04 -0700a3fcaf20dad5a7bcbd5c4e3dc0ac916911172494submodule needs path not nameeditgit_setup.pysrc/physics/cam/clubb_intr.F90c7c061c84a0af3735208a78d2b6b9c25cff968581704409522000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug that only crops up with intel+debugging 2024-01-04 17:05:22 -0600c7c061c84a0af3735208a78d2b6b9c25cff96858Fixing bug that only crops up with intel+debuggingeditsrc/physics/cam/clubb_intr.F90git_setup.pyeed05bd0e63cd08b9d8d6d388cdfc65764ba82041704409595000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduimprove error checking 2024-01-04 16:06:35 -0700eed05bd0e63cd08b9d8d6d388cdfc65764ba8204improve error checkingeditgit_setup.pygit_setup.py20431710b064b0cf4876de54065a38d962facb231704410204000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd more logging 2024-01-04 16:16:44 -070020431710b064b0cf4876de54065a38d962facb23add more loggingeditgit_setup.pymodules/gitinterface.py9c35b88bcf355d48a262e82d04daba36ed4071aa1704411286000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edusubmodule always usees shell 2024-01-04 16:34:46 -07009c35b88bcf355d48a262e82d04daba36ed4071aasubmodule always usees shelleditmodules/gitinterface.pygit_setup.py8c5dfcdc0e7eba4cf369e15e40f19a68de42f6a51704411751000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix toplevel 2024-01-04 16:42:31 -07008c5dfcdc0e7eba4cf369e15e40f19a68de42f6a5fix topleveleditgit_setup.pygit_setup.pyd431e3b7cc23672a7cd081c795ee0607e17beb3b1704411873000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix toplevel 2024-01-04 16:44:33 -0700d431e3b7cc23672a7cd081c795ee0607e17beb3bfix topleveleditgit_setup.pygit_setup.pyb6ee263ce6ee009f40288275866f45b471b8b6c81704412112000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutry again 2024-01-04 16:48:32 -0700b6ee263ce6ee009f40288275866f45b471b8b6c8try againeditgit_setup.pygit_setup.py996dfb6323dfd25e93c3a55ed1efb18d1f0b148a1704470688000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd command line options and support for update 2024-01-05 09:04:48 -0700996dfb6323dfd25e93c3a55ed1efb18d1f0b148aadd command line options and support for updateeditgit_setup.pygit_setup.py647a8deea48c13ad9dbbb55fbcf294ff6eec65461704475387000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix new issues 2024-01-05 10:23:07 -0700647a8deea48c13ad9dbbb55fbcf294ff6eec6546fix new issueseditgit_setup.pygit_setup.pyfbb8eaf70bd134f8ec5de662294f033c1d18b8ed1704476688000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate esmrequired variable 2024-01-05 10:44:48 -0700fbb8eaf70bd134f8ec5de662294f033c1d18b8edupdate esmrequired variableeditgit_setup.pycime_config/testdefs/testlist_cam.xml24f45ce7a750d11a438b1b50d753fdeee3baebb71704478886000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduIncreased wallclock time for one test on derecho 2024-01-05 11:21:26 -070024f45ce7a750d11a438b1b50d753fdeee3baebb7Increased wallclock time for one test on derechoeditcime_config/testdefs/testlist_cam.xmlgit_setup.pymodules/gitinterface.pye22d95b589470d1d4f93970951b555b1fdfa74621704479678000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix recursive issue 2024-01-05 11:34:38 -0700e22d95b589470d1d4f93970951b555b1fdfa7462fix recursive issueeditgit_setup.pyeditmodules/gitinterface.pyExternals.cfga8a92e6817953232f159135d9a4875fd5a3d88fa1704481778000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho5.hsn.de.hpc.ucar.eduupdate cime external 2024-01-05 12:09:38 -0700a8a92e6817953232f159135d9a4875fd5a3d88faupdate cime externaleditExternals.cfgdoc/ChangeLog9249c0c6abe13a8aaff5032f27ec973138a7faf61704483635000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFinalize ChangeLog 2024-01-05 12:40:35 -07009249c0c6abe13a8aaff5032f27ec973138a7faf6Finalize ChangeLogeditdoc/ChangeLoggit_setup.py99d5439757f52b01fa0ae9f0924c472b255083eb1704487953000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd status flag support 2024-01-05 13:52:33 -070099d5439757f52b01fa0ae9f0924c472b255083ebadd status flag supporteditgit_setup.pymodules/gitmodules.pygit_setup.pymodules/utils.pygit-fleximod.pyshow-tagsgit_sparse_checkoutgit_setup671bb1df07b611db05947f63572e38c2f6286a9a1704558486000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd a gitmodules class 2024-01-06 09:28:06 -0700671bb1df07b611db05947f63572e38c2f6286a9aadd a gitmodules classdeletegit_setup.pyeditmodules/utils.pydeleteshow-tagsdeletegit_sparse_checkoutaddgit-fleximod.pydeletegit_setupaddmodules/gitmodules.pymodules/gitmodules.pygit-fleximodgit-fleximod.py815e6cd0d9f00fdf1cd06bd67ca912006c8d3a461704562487000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edunow renamed git-fleximod for git interface 2024-01-06 10:34:47 -0700815e6cd0d9f00fdf1cd06bd67ca912006c8d3a46now renamed git-fleximod for git interfaceeditmodules/gitmodules.pyaddgit-fleximoddeletegit-fleximod.pygit-fleximodmodules/utils.pya6ce960bc9d102007608ab7dde8b9fd4ad590dec1704566485000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educlean up and refactor, rename to git-fleximod 2024-01-06 11:41:25 -0700a6ce960bc9d102007608ab7dde8b9fd4ad590decclean up and refactor, rename to git-fleximodeditgit-fleximodeditmodules/utils.pyversion.txt.pre-commit-config.yaml816158ceb02abca2b360811beba25a5c1b98c5e21704568264000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd version.txt and .pre-commit-config.yaml 2024-01-06 12:11:04 -0700816158ceb02abca2b360811beba25a5c1b98c5e2add version.txt and .pre-commit-config.yamladdversion.txtadd.pre-commit-config.yamlgit-fleximod3be6537e39f7d9209be9b66b36756da0224556121704579675000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue in update 2024-01-06 15:21:15 -07003be6537e39f7d9209be9b66b36756da022455612fix issue in updateeditgit-fleximodmodules/gitmodules.pygit-fleximodd709c124c284c1ad007caed586db93914d78be471704581258000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumake action a required subargument to look more like a git subcommand 2024-01-06 15:47:38 -0700d709c124c284c1ad007caed586db93914d78be47make action a required subargument to look more like a git subcommandeditgit-fleximodeditmodules/gitmodules.pymodules/gitmodules.py83aea04a4366e246e5a107e88ef29aa347657e241704582123000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd documentation 2024-01-06 16:02:03 -070083aea04a4366e246e5a107e88ef29aa347657e24add documentationeditmodules/gitmodules.pyLicenseREADME.md905824aefcd187a25f4133826bd0a0a76edcfcdd1704643763000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd README and License 2024-01-07 09:09:23 -0700905824aefcd187a25f4133826bd0a0a76edcfcddadd README and LicenseaddREADME.mdaddLicensegit-fleximodREADME.md3c723a86b39db2274c223e4a8ffb1d83f5b01ec11704650202000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate README 2024-01-07 10:56:42 -07003c723a86b39db2274c223e4a8ffb1d83f5b01ec1update READMEeditREADME.mdeditgit-fleximodREADME.md3903206397dfebfd0ca2f02a53761466b79cfc891704650700000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutrying to improve markdown formatting 2024-01-07 11:05:00 -07003903206397dfebfd0ca2f02a53761466b79cfc89trying to improve markdown formattingeditREADME.mdREADME.md8bd89cf9b7bdd710b0aa23def9a4b2f21c047b841704650987000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutrying to improve markdown 2024-01-07 11:09:47 -07008bd89cf9b7bdd710b0aa23def9a4b2f21c047b84trying to improve markdowneditREADME.mdREADME.mde83bc7a865540751093c393f9edd8f66a450cf401704651133000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutrying to improve markdown 2024-01-07 11:12:13 -0700e83bc7a865540751093c393f9edd8f66a450cf40trying to improve markdowneditREADME.mdREADME.md967edf4ced928a444162079227637c794ed562e01704651262000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutrying to improve markdown 2024-01-07 11:14:22 -0700967edf4ced928a444162079227637c794ed562e0trying to improve markdowneditREADME.mdsetup.py4926864512c75496530bc713ddadb26071f16ac91704658620000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd pip setup.py file 2024-01-07 13:17:00 -07004926864512c75496530bc713ddadb26071f16ac9add pip setup.py fileaddsetup.pygit-fleximodd2b3985e4c0d43eb5afbf497f50fd67adde2d0e31704658968000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edubug fix 2024-01-07 13:22:48 -0700d2b3985e4c0d43eb5afbf497f50fd67adde2d0e3bug fixeditgit-fleximodgit-fleximod27375e88a3ee5d08ffc567f2d52f7ab6a7d1df7e1704662635000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduimprove messages 2024-01-07 14:23:55 -070027375e88a3ee5d08ffc567f2d52f7ab6a7d1df7eimprove messageseditgit-fleximodgit-fleximoda17fe845273a99aa767558b88a020c1d82724f981704740583000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix some issues in sparse checkout 2024-01-08 12:03:03 -0700a17fe845273a99aa767558b88a020c1d82724f98fix some issues in sparse checkouteditgit-fleximodgit-fleximod8c9c123bd687e857a0d01205ddd0a3d9849fe6ec1704749757000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduneed to replace ssh with https 2024-01-08 14:35:57 -07008c9c123bd687e857a0d01205ddd0a3d9849fe6ecneed to replace ssh with httpseditgit-fleximodgit-fleximod2752eccf37f28d3b7505d7d3c1faeb352c1a1bd01704750348000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educhange from ssh to https 2024-01-08 14:45:48 -07002752eccf37f28d3b7505d7d3c1faeb352c1a1bd0change from ssh to httpseditgit-fleximodgit-fleximod2092f3ff672051f4c34de4986f7b59debbc309201704751124000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix ssh issue 2024-01-08 14:58:44 -07002092f3ff672051f4c34de4986f7b59debbc30920fix ssh issueeditgit-fleximodgit-fleximod4fd30a41f604b2bb6fbb8533429b60b4f1d0adc51704751651000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove debug print statments 2024-01-08 15:07:31 -07004fd30a41f604b2bb6fbb8533429b60b4f1d0adc5remove debug print statmentseditgit-fleximodgit-fleximod86a5a72abcbf9709a01ad01fa6c01229700a13f21704758361000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue with sparse checkout 2024-01-08 16:59:21 -070086a5a72abcbf9709a01ad01fa6c01229700a13f2fix issue with sparse checkouteditgit-fleximodadvance_clubb_core_module.F90f759e61ac5c41dc5fe9615136b3347fcbef3aff41704774211000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding new argument list variables to openacc copyin statements 2024-01-08 22:23:31 -0600f759e61ac5c41dc5fe9615136b3347fcbef3aff4Adding new argument list variables to openacc copyin statementseditadvance_clubb_core_module.F90modules/gitmodules.pygit-fleximoda9130f296d068f441994084f86c2fd376c66d6be1704818537000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumore error checking 2024-01-09 09:42:17 -0700a9130f296d068f441994084f86c2fd376c66d6bemore error checkingeditmodules/gitmodules.pyeditgit-fleximodgit-fleximod3ccf8a3adf15825ff440f9430c9cf3f56b99fe4b1704847468000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduhack to prevent file corruption 2024-01-09 17:44:28 -07003ccf8a3adf15825ff440f9430c9cf3f56b99fe4bhack to prevent file corruptioneditgit-fleximodgit-fleximod840499c5601b1c944ac509b38558da0e8323ed9b1704848461000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduignore untracked files in submodules 2024-01-09 18:01:01 -0700840499c5601b1c944ac509b38558da0e8323ed9bignore untracked files in submoduleseditgit-fleximodsrc/control/cam_history.F90src/physics/cam/chem_surfvals.F90src/dynamics/se/se_single_column_mod.F90src/dynamics/eul/iop.F90src/dynamics/se/stepon.F90src/control/ncdio_atm.F90src/dynamics/se/advect_tend.F90src/control/history_scam.F90src/dynamics/eul/tfilt_massfix.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/infrastructure/phys_grid.F90src/control/scamMod.F90b4ed83aa49963d1a16c7bcd1c8d702a41808b43f1704851450000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comscam clean and updates for derecho 2024-01-09 18:50:50 -0700b4ed83aa49963d1a16c7bcd1c8d702a41808b43fscam clean and updates for derechoeditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/control/history_scam.F90editsrc/control/cam_history.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/se_single_column_mod.F90editsrc/dynamics/eul/iop.F90editsrc/infrastructure/phys_grid.F90editsrc/control/scamMod.F90editsrc/dynamics/se/advect_tend.F90editsrc/control/ncdio_atm.F90editsrc/dynamics/eul/tfilt_massfix.F90editsrc/dynamics/se/stepon.F90editsrc/physics/cam/chem_surfvals.F90modules/gitmodules.pygit-fleximoda25b257efc706ebc03468be128ec9c566791b05e1704889458000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edua better solution to the file coruption issue 2024-01-10 05:24:18 -0700a25b257efc706ebc03468be128ec9c566791b05ea better solution to the file coruption issueeditgit-fleximodeditmodules/gitmodules.pygit-fleximod657f110a761e2c49524e2f2dd64c139968b3ef2c1704908910000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduawkward solution for ssh urls 2024-01-10 10:48:30 -0700657f110a761e2c49524e2f2dd64c139968b3ef2cawkward solution for ssh urlseditgit-fleximodgit-fleximod4879c7530523b8b7a16c11a9c113755d8b0e4a851704909451000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove debug print statements 2024-01-10 10:57:31 -07004879c7530523b8b7a16c11a9c113755d8b0e4a85remove debug print statementseditgit-fleximodsrc/physics/cam/clubb_intr.F90466d2a48b483f5751e80a4bca49023e71dc5864d1704917185000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduMerged in UWM code changes to clubb_intr 2024-01-10 13:06:25 -0700466d2a48b483f5751e80a4bca49023e71dc5864dMerged in UWM code changes to clubb_intreditsrc/physics/cam/clubb_intr.F90modules/utils.pysrc/fleximod/__init__.pymodules/lstripreader.pysetup.pymodules/__init__.pysrc/fleximod/gitmodules.pymodules/gitinterface.pymodules/gitmodules.pysrc/fleximod/gitinterface.pysrc/fleximod/utils.pygit-fleximodversion.txtsrc/git-fleximodsrc/fleximod/lstripreader.pysrc/fleximod/version.py661ba5efc813fa910e7fc43172a513a177d2e0131704932993000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate for distribution 2024-01-10 17:29:53 -0700661ba5efc813fa910e7fc43172a513a177d2e013update for distributiondeletemodules/__init__.pydeleteversion.txtaddsrc/fleximod/__init__.pyaddsrc/fleximod/utils.pyaddsrc/fleximod/gitmodules.pyaddsrc/fleximod/lstripreader.pyeditsetup.pyaddsrc/fleximod/version.pydeletegit-fleximodaddsrc/git-fleximoddeletemodules/gitmodules.pydeletemodules/lstripreader.pyaddsrc/fleximod/gitinterface.pydeletemodules/gitinterface.pydeletemodules/utils.pysrc/physics/cosp2/.cosp_sparse_checkoutbld/configureExternals_CAM.cfgef4317dfb9914691850144c89e673ef4aaa99fb81704949733000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduCherry picked changes from NCAR (https://github.com/ESCOMP/CAM/commit/8a07c9e37cb5028b08cf0c66d6505e9c60b691c0) to switch svn to git. 2024-01-10 23:08:53 -0600ef4317dfb9914691850144c89e673ef4aaa99fb8Cherry picked changes from NCAR (https://github.com/ESCOMP/CAM/commit/8a07c9e37cb5028b08cf0c66d6505e9c60b691c0) to switch svn to git.addsrc/physics/cosp2/.cosp_sparse_checkouteditExternals_CAM.cfgeditbld/configurebld/configure5717a7d5868688cede77de0acdbe88cd12b070b91704951544000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUndoing some of the cherry picked changes. These seem related to moving the clubb and silhs code to different directories, which we would have to reflect in our git structure before including. 2024-01-10 23:39:04 -06005717a7d5868688cede77de0acdbe88cd12b070b9Undoing some of the cherry picked changes. These seem related to moving the clubb and silhs code to different directories, which we would have to reflect in our git structure before including.editbld/configuresrc/git-fleximodb22bab6c5c359a9635493dd90cc8d17af03321b91704996195000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix error with version flag 2024-01-11 11:03:15 -0700b22bab6c5c359a9635493dd90cc8d17af03321b9fix error with version flageditsrc/git-fleximodsrc/fleximod/version.pye81099a63708e4e5cace47b6a1fe39bafee694b51704996250000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate version to 0.1.4 2024-01-11 11:04:10 -0700e81099a63708e4e5cace47b6a1fe39bafee694b5update version to 0.1.4editsrc/fleximod/version.pysrc/physics/cam/subcol_SILHS.F90f0f446da1baa55fd8d0e5a1110c58e1a83216a9a1705000131000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUWM updates for SILHS 2024-01-11 12:08:51 -0700f0f446da1baa55fd8d0e5a1110c58e1a83216a9aUWM updates for SILHSeditsrc/physics/cam/subcol_SILHS.F90mean_adv.F90830db1eac248ed03a0f52bf1d7402393b227b49e1705003858000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering the mean advection code in preparation for ghost point removal, since the mean advection code incorporates the ghost point in its current calculations. The lower boundary is now treated in the same manner as the upper boundary, where a zero derivative over the boundary is assumed. Any interaction of the current ghost level with the model code is now removed from the mean advection calculation. The results are bit-for-bit for most cases, but not all of them. They are not necessarily expected to be bit-for-bit. There are no discernable differences on plots of priority cases. However, this commit is technically BIT_CHANGING. 2024-01-11 14:10:58 -0600830db1eac248ed03a0f52bf1d7402393b227b49eI am altering the mean advection code in preparation for ghost pointeditmean_adv.F90README.md61fee139e3992408cd2f47cfb5ec28143bbe98741705007094000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking commit to fix nightly tests, they had failed because of git dropping svn support, which has been fixed by the previous two commits. RESOLVED:9be0cef04a0a87e891e8274b1cefd661c25b0d0b 2024-01-11 15:04:54 -060061fee139e3992408cd2f47cfb5ec28143bbe9874Making commit to fix nightly tests, they had failed because of git dropping svn support, which has been fixed by the previous two commits. RESOLVED:9be0cef04a0a87e891e8274b1cefd661c25b0d0beditREADME.mdsrc/physics/cam/rk_stratiform.F90src/physics/spcam/crmclouds_camaerosols.F90src/physics/cam/convect_shallow.F90src/physics/cam/cloud_fraction.F90src/physics/cam/macrop_driver.F90src/physics/cam/zm_conv_intr.F90bdb36e6042dc86bcfc86c42fbeb9944165ff04e41705015578000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduOnly pass ncols to ZM routines 2024-01-11 16:26:18 -0700bdb36e6042dc86bcfc86c42fbeb9944165ff04e4Only pass ncols to ZM routineseditsrc/physics/cam/macrop_driver.F90editsrc/physics/cam/cloud_fraction.F90editsrc/physics/cam/rk_stratiform.F90editsrc/physics/spcam/crmclouds_camaerosols.F90editsrc/physics/cam/convect_shallow.F90editsrc/physics/cam/zm_conv_intr.F90Externals_CAM.cfg8e3ec85cd5bcc49bc5002ca3e9da859fb23b841b1705016096000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduPoint to new CLUBB External 2024-01-11 16:34:56 -07008e3ec85cd5bcc49bc5002ca3e9da859fb23b841bPoint to new CLUBB ExternaleditExternals_CAM.cfgcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cambld/namelist_files/namelist_definition.xmlcime_config/usermods_dirs/scam_mandatory/shell_commandsbld/namelist_files/namelist_defaults_cam.xmle3c100607ead4ddc443f8387200adf1e2f0a838b1705091858000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFew more small changes from larson-group 2024-01-12 13:37:38 -0700e3c100607ead4ddc443f8387200adf1e2f0a838bFew more small changes from larson-groupeditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditcime_config/usermods_dirs/scam_mandatory/shell_commandseditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camsrc/fleximod/version.pysrc/git-fleximod1a80e973560b86ccee228274dbb2b38e17037abc1705330321000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issues with rerunning 2024-01-15 07:52:01 -07001a80e973560b86ccee228274dbb2b38e17037abcfix issues with rerunningeditsrc/git-fleximodeditsrc/fleximod/version.pysetup.cfgsetup.py13eb8b87bcfba34eb70c5bd3a39e570d2527a4521705330390000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate setup.py 2024-01-15 07:53:10 -070013eb8b87bcfba34eb70c5bd3a39e570d2527a452update setup.pyaddsetup.cfgeditsetup.pysrc/fleximod/version.py5a590c541ca168c879d3726957c102f878af0f6d1705336570000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate version 2024-01-15 09:36:10 -07005a590c541ca168c879d3726957c102f878af0f6dupdate versioneditsrc/fleximod/version.pysrc/physics/cam/gw_movmtn.F90src/physics/cam/clubb_intr.F90src/physics/cam/gw_drag.F9030d956bcfa4a2e0ac4b0e112268648950c760bec1705419375000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.edugeometry works 2024-01-16 08:36:15 -070030d956bcfa4a2e0ac4b0e112268648950c760becgeometry workseditsrc/physics/cam/gw_drag.F90editsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/clubb_intr.F90src/fleximod/version.pysrc/git-fleximod8c92b14204c80b0b444a3155a1ce52e5dca8411b1705533813000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduprovide more info for status of uninstalled submodules 2024-01-17 16:23:33 -07008c92b14204c80b0b444a3155a1ce52e5dca8411bprovide more info for status of uninstalled submoduleseditsrc/git-fleximodeditsrc/fleximod/version.pytridiag_lu_solver.F90ce785a929450dec9c013e6702b1bc9dcbc872b351705612684000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing tridiag solver bug. See https://github.com/larson-group/clubb/issues/1139 2024-01-18 15:18:04 -0600ce785a929450dec9c013e6702b1bc9dcbc872b35Fixing tridiag solver bug. See https://github.com/larson-group/clubb/issues/1139edittridiag_lu_solver.F90bld/configure3558a95178d9a2a2abea6bf88d2e1309f836f3261705612896000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/configure Remove redundant/over limiting CCP definitions for GEOS-Chem Co-authored-by: Brian Eaton <eaton@ucar.edu> 2024-01-18 16:21:36 -05003558a95178d9a2a2abea6bf88d2e1309f836f326Update bld/configureeditbld/configurebld/configure14b6813e931f7a4622c5175ca007d9c371ea76d71705613839000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduClean up GEOS-Chem code in configure based on suggestions from Brian Easton Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-18 14:37:19 -070014b6813e931f7a4622c5175ca007d9c371ea76d7Clean up GEOS-Chem code in configure based on suggestions from Brian Eastoneditbld/configuresrc/fleximod/version.pyescomp_installsrc/git-fleximod43225eac86892d074453cbdc622124b2eedf48cf1705621792000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd test action 2024-01-18 16:49:52 -070043225eac86892d074453cbdc622124b2eedf48cfadd test actioneditsrc/git-fleximodeditsrc/fleximod/version.pyaddescomp_installadvance_clubb_core_module.F90clubb_api_module.F90e27a93ac46e46daa6d71e41f24993f9155dc02021705629086000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSlight rework to acc data statements. This allows us to use return calls in advance_clubb_core again. See https://github.com/larson-group/clubb/issues/1139 2024-01-18 19:51:26 -0600e27a93ac46e46daa6d71e41f24993f9155dc0202Slight rework to acc data statements. This allows us to use return calls in advance_clubb_core again. See https://github.com/larson-group/clubb/issues/1139editadvance_clubb_core_module.F90editclubb_api_module.F90mixing_length.F9033a2cb66dae21387f7a43e079180b02f622df4641705629109000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small GPU stats bug 2024-01-18 19:51:49 -060033a2cb66dae21387f7a43e079180b02f622df464Fixing small GPU stats bugeditmixing_length.F90mono_flux_limiter.F90cf82acebf4a1cc31f092af210fd2e7970452e0691705629562000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging xm to out in mono flux solver. There is no need for it to be inout, and it confused me for a bit so I'm fixing it. 2024-01-18 19:59:22 -0600cf82acebf4a1cc31f092af210fd2e7970452e069Changing xm to out in mono flux solver. There is no need for it to be inout, and it confused me for a bit so I'm fixing it.editmono_flux_limiter.F90Externals_CAM.cfgsrc/chemistry/modal_aero/modal_aero_convproc.F90src/physics/cam/zm_conv_intr.F902171b0154df5ba2a0508e7cbc3a1f28a6671efc41705702802000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduaddress final reviewer comments 2024-01-19 15:20:02 -07002171b0154df5ba2a0508e7cbc3a1f28a6671efc4address final reviewer commentseditExternals_CAM.cfgeditsrc/physics/cam/zm_conv_intr.F90editsrc/chemistry/modal_aero/modal_aero_convproc.F90cime_config/testdefs/testlist_cam.xmlf2dae331c1ab706a3f0ca0973ebfa605b3743b8d1705703253000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove CAM3 test since no longer supported 2024-01-19 15:27:33 -0700f2dae331c1ab706a3f0ca0973ebfa605b3743b8dRemove CAM3 test since no longer supportededitcime_config/testdefs/testlist_cam.xmlsrc/control/scamMod.F90b567e510080321e4d0d9e71401e83bcb7ca7d9c81705815122000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edubug fix for iopTimeIdx when iop step size is smaller than model timestep 2024-01-20 22:32:02 -0700b567e510080321e4d0d9e71401e83bcb7ca7d9c8bug fix for iopTimeIdx when iop step size is smaller than model timestepeditsrc/control/scamMod.F90advance_clubb_core_module.F90a1fd38a0ba17ef79fa0590646eb851fce4079bdb1705819808000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs. 2024-01-21 00:50:08 -0600a1fd38a0ba17ef79fa0590646eb851fce4079bdbAdding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs.editadvance_clubb_core_module.F90latin_hypercube_driver_module.F904b9838afa120e0a06c36eebb8e98027d0587dbba1705819808000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs. 2024-01-21 00:50:08 -06004b9838afa120e0a06c36eebb8e98027d0587dbbaAdding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs.editlatin_hypercube_driver_module.F90Externals.cfgcime_config/config_pes.xmlbld/namelist_files/namelist_defaults_cam.xmlsrc/control/ncdio_atm.F90src/control/scamMod.F90src/control/history_scam.F90src/dynamics/se/apply_iop_forcing.F90src/dynamics/eul/dyn_comp.F90e7d33d75b934b181b596da0c6d97440886a233b41705895692000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR updates for Cheryl and Jim 2024-01-21 20:54:52 -0700e7d33d75b934b181b596da0c6d97440886a233b4PR updates for Cheryl and Jimeditsrc/control/history_scam.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/control/ncdio_atm.F90editsrc/dynamics/se/apply_iop_forcing.F90editExternals.cfgeditcime_config/config_pes.xmleditsrc/control/scamMod.F90editsrc/dynamics/eul/dyn_comp.F90bld/namelist_files/namelist_definition.xmlsrc/chemistry/geoschem/chemistry.F90bld/build-namelistcime_config/config_component.xml6319c77344c79f6ec393dbc4dfc8bb27612624f51706028011000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove unnecessary changes made for GEOS-Chem; minor bug fix for GNU Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-23 09:40:11 -07006319c77344c79f6ec393dbc4dfc8bb27612624f5Remove unnecessary changes made for GEOS-Chem; minor bug fix for GNUeditsrc/chemistry/geoschem/chemistry.F90editbld/build-namelisteditcime_config/config_component.xmleditbld/namelist_files/namelist_definition.xmlsrc/chemistry/modal_aero/modal_aero_convproc.F9050f20f4487f2f9d3132c697ab4484e33bece1b0e1706035323000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing ncol declaration 2024-01-23 11:42:03 -070050f20f4487f2f9d3132c697ab4484e33bece1b0eAdd missing ncol declarationeditsrc/chemistry/modal_aero/modal_aero_convproc.F90src/dynamics/se/dycore/fvm_reconstruction_mod.F90src/dynamics/se/dycore/fvm_mapping.F90bld/build-namelistsrc/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/fvm_control_volume_mod.F90src/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dp_coupling.F90bld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_definition.xmlsrc/dynamics/se/gravity_waves_sources.F90src/dynamics/se/dycore/control_mod.F90src/physics/cam/vertical_diffusion.F9009f38f9a04a8f40441a74b4d5caf4edfb9b3d0981706046022000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduscience-optimized dycore - stabilize WACCM 2024-01-23 14:40:22 -070009f38f9a04a8f40441a74b4d5caf4edfb9b3d098science-optimized dycore - stabilize WACCMeditbld/namelist_files/namelist_definition.xmleditsrc/dynamics/se/dycore/prim_advection_mod.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/dynamics/se/dycore/fvm_control_volume_mod.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/gravity_waves_sources.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90editsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mod.F90editsrc/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dycore/control_mod.F90editsrc/physics/cam/vertical_diffusion.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editbld/namelist_files/namelist_defaults_cam.xmleditbld/build-namelistdoc/ChangeLogbd1f0047ccd5630c571a24ba941f6b9c07a6d5481706054184000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_3_146 2024-01-23 16:56:24 -0700bd1f0047ccd5630c571a24ba941f6b9c07a6d548ChangeLog for cam6_3_146editdoc/ChangeLogadvance_wp2_wp3_module.F90623ed86ffb5b16dbcd6b72aa76e4aede6c38be6b1706079736000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNow that the value of wp3 is being set to a boundary value of 0 at the first thermodynamic grid level above the surface, it doesn't make sense to loop over budget terms anymore at that particular level, since they don't factor in the solution and give a false impression. With this commit, wp3 budget terms now start their loop at level 3. This commit is BIT_CHANGING, but the only thing that changes are budget stats for a couple of wp3 budget terms. The solution does not actually change. 2024-01-24 01:02:16 -0600623ed86ffb5b16dbcd6b72aa76e4aede6c38be6bNow that the value of wp3 is being set to a boundary value of 0editadvance_wp2_wp3_module.F90Externals_CAM.cfgfd8fa8e6141cf983d806adcc95e2d186205441951706109565000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate RRTMGP externals 2024-01-24 10:19:25 -0500fd8fa8e6141cf983d806adcc95e2d18620544195update RRTMGP externalseditExternals_CAM.cfgbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90a019b233197289b2288cd74573ead9c3710a63831706128016000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing some review comments 2024-01-24 13:26:56 -0700a019b233197289b2288cd74573ead9c3710a6383Addressing some review commentseditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/clubb_intr.F90src/dynamics/se/dp_coupling.F902312bef838b7ed2d571a1dd480f2bd4ca9de62531706299223000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduresolve issue #864 (qneg) 2024-01-26 13:00:23 -07002312bef838b7ed2d571a1dd480f2bd4ca9de6253resolve issue #864 (qneg)editsrc/dynamics/se/dp_coupling.F90bld/namelist_files/namelist_defaults_cam.xml00c09511d8d0fa88966a8abd8e39c8129c8727af1706299324000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange default topo file for ne30gp3 (read in PHIS in GLL grid); remove unused pg4 topo files 2024-01-26 13:02:04 -070000c09511d8d0fa88966a8abd8e39c8129c8727afchange default topo file for ne30gp3 (read in PHIS in GLL grid); removeeditbld/namelist_files/namelist_defaults_cam.xmlsrc/dynamics/se/dycore/fvm_mod.F90src/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dp_coupling.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/prim_advection_mod.F90src/dynamics/se/dycore/prim_advance_mod.F90e71a057de6f269c77cd12d108509889c2b9fc22d1706634403000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove ifdef old_cam 2024-01-30 10:06:43 -0700e71a057de6f269c77cd12d108509889c2b9fc22dremove ifdef old_cameditsrc/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore/fvm_mod.F90editsrc/dynamics/se/dycore/global_norms_mod.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/prim_advection_mod.F90editsrc/dynamics/se/dp_coupling.F90bld/configure33012678a8af030be35ce655e3a4e61eb3c5edd91706635090000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRevert setting GEOS-Chem $chem_cppdefs to earlier in configure Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-30 10:18:10 -070033012678a8af030be35ce655e3a4e61eb3c5edd9Revert setting GEOS-Chem $chem_cppdefs to earlier in configureeditbld/configurebld/namelist_files/use_cases/2010_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem_nudged.xmlbld/namelist_files/use_cases/2000_geoschem.xmlbld/namelist_files/use_cases/hist_geoschem.xml9a4144a7ed59ca943ae29074b75029d01b25538b1706635119000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduRemove project paths to GEOS-Chem inputs; now stored in inputdata Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-30 10:18:39 -07009a4144a7ed59ca943ae29074b75029d01b25538bRemove project paths to GEOS-Chem inputs; now stored in inputdataeditbld/namelist_files/use_cases/2010_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem.xmleditbld/namelist_files/use_cases/hist_geoschem_nudged.xmleditbld/namelist_files/use_cases/2000_geoschem.xmlsrc/dynamics/se/dp_coupling.F90a4d2a3a5dd2b399a8ac22f3a05b26165e8b97ae01706636545000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduforgot to remove ifndef old_cam 2024-01-30 10:42:25 -0700a4d2a3a5dd2b399a8ac22f3a05b26165e8b97ae0forgot to remove ifndef old_cameditsrc/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/fvm_reconstruction_mod.F907627b26f9ff263e3fe435565806e93505f5db6481706636858000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove comment 2024-01-30 10:47:38 -07007627b26f9ff263e3fe435565806e93505f5db648remove commenteditsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90src/dynamics/se/dycore/fvm_reconstruction_mod.F90ea7da3216099805d0ce9b8b5d89993f10f2190021706636942000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix previous commit 2024-01-30 10:49:02 -0700ea7da3216099805d0ce9b8b5d89993f10f219002fix previous commiteditsrc/dynamics/se/dycore/fvm_reconstruction_mod.F90src/dynamics/se/dyn_comp.F90ed72e9a97f727573a7dfc500bf63008b4c1bf1f31706637096000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduremove ifndef old_cam 2024-01-30 10:51:36 -0700ed72e9a97f727573a7dfc500bf63008b4c1bf1f3remove ifndef old_cameditsrc/dynamics/se/dyn_comp.F90src/dynamics/se/dyn_comp.F908bbc109a28147a4068864cc9390cb289dfc0918b1706637150000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educomplete previous commit 2024-01-30 10:52:30 -07008bbc109a28147a4068864cc9390cb289dfc0918bcomplete previous commiteditsrc/dynamics/se/dyn_comp.F90doc/ChangeLogc809163147e15e915da95356a5eba23588a8ff0e1706638136000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd changelog message 2024-01-30 11:08:56 -0700c809163147e15e915da95356a5eba23588a8ff0eadd changelog messageeditdoc/ChangeLogdoc/ChangeLog648368f93b38e252cc3f9411f6e9da26968c5eaa1706638386000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor modification to changelog 2024-01-30 11:13:06 -0700648368f93b38e252cc3f9411f6e9da26968c5eaaminor modification to changelogeditdoc/ChangeLogmodel_flags.F90d6d044841a3c4fca653f4822509f1f9ceacfd0eb1706649109000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis is (amazingly) BIT_CHANGING. The differences are due to some compiler optimizations, see https://github.com/larson-group/clubb/pull/1133\#issuecomment-1865156979. 2024-01-30 15:11:49 -0600d6d044841a3c4fca653f4822509f1f9ceacfd0ebThis is (amazingly) BIT_CHANGING. The differences are due to some compiler optimizations, see https://github.com/larson-group/clubb/pull/1133\#issuecomment-1865156979.editmodel_flags.F90cime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camsrc/physics/cam/clubb_intr.F90544e33c363741892a77552f11ee250bf330e84a71706652987000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing more initial review comments 2024-01-30 15:16:27 -0700544e33c363741892a77552f11ee250bf330e84a7Addressing more initial review commentseditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditsrc/physics/cam/clubb_intr.F90cime_config/testdefs/testlist_cam.xmlc18380c179a758804ecf437e7f4c91f1bd9fcf6b1706653621000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdated GEOs-Chem tests from cheyenne to derecho Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-30 15:27:01 -0700c18380c179a758804ecf437e7f4c91f1bd9fcf6bUpdated GEOs-Chem tests from cheyenne to derechoeditcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testlist_cam.xml5d05e8c5320c752006a4fb0248ce6206cd2c730e1706654058000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduAdd categories prealpha and aux_cam to all GEOS-Chem compset tests Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-30 15:34:18 -07005d05e8c5320c752006a4fb0248ce6206cd2c730eAdd categories prealpha and aux_cam to all GEOS-Chem compset testseditcime_config/testdefs/testlist_cam.xmlsrc/git-fleximodREADME.mdbbb1b1d98b587ddb5dd455a9ce889c64d53f71511706656733000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue with status 2024-01-30 16:18:53 -0700bbb1b1d98b587ddb5dd455a9ce889c64d53f7151fix issue with statuseditsrc/git-fleximodeditREADME.mdsrc/fleximod/version.pyaf78aa4de1632ad1bcb8e94bfa7b2722941081321706657930000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate version 2024-01-30 16:38:50 -0700af78aa4de1632ad1bcb8e94bfa7b272294108132update versioneditsrc/fleximod/version.pybld/build-namelist5fa370c9c6bfc17dcaffbf3bd6625f400af23dc41706714260000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduDelete redundant setting of deposition lists in namelists Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-31 08:17:40 -07005fa370c9c6bfc17dcaffbf3bd6625f400af23dc4Delete redundant setting of deposition lists in namelistseditbld/build-namelistcime_config/testdefs/testlist_cam.xml28412bfe7f7eff39c5e870a3e26012dabb333c451706714543000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduReduce GEOS-Chem tests to one aux_cam and one prealpha across two compsets Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-31 08:22:23 -070028412bfe7f7eff39c5e870a3e26012dabb333c45Reduce GEOS-Chem tests to one aux_cam and one prealpha across two compsetseditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam/clubb_intr.F9042a6316ad3c776e9951175cae91752ceef7a68df1706733029000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFixed some oopses 2024-01-31 13:30:29 -070042a6316ad3c776e9951175cae91752ceef7a68dfFixed some oopseseditsrc/physics/cam/clubb_intr.F90cime_config/testdefs/testlist_cam.xml40371e470698906677ec4d3835248ba1dbdc06de1706737866000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduChange FCnudged_GC derecho test to not use zonal mean nudging I previously changed the test to zonal mean nudging when updating from cheyenne to derecho. Apparently the compset is not set up to do this and I therefore reverted to the previous test which is basic nuging. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-01-31 14:51:06 -070040371e470698906677ec4d3835248ba1dbdc06deChange FCnudged_GC derecho test to not use zonal mean nudgingeditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam/slingo_liq_optics.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/rrtmg/radiation.F90src/physics/cam/oldcloud_optics.F90src/physics/cam/slingo.F90bld/configuredoc/ChangeLogsrc/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/radiation.F90src/physics/cam/ebert_curry.F90src/physics/cam/oldcloud.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry_ice_optics.F90a3571bc819dfe8cb40e5e8a80b23a41e79e7a5fd1706747928000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-01-31 19:38:48 -0500a3571bc819dfe8cb40e5e8a80b23a41e79e7a5fdaddress review commentsdeletesrc/physics/cam/oldcloud.F90editsrc/physics/rrtmg/radiation.F90deletesrc/physics/cam/slingo.F90editsrc/physics/rrtmgp/mcica_subcol_gen.F90editsrc/physics/rrtmgp/radconstants.F90deletesrc/physics/cam/ebert_curry.F90addsrc/physics/cam/ebert_curry_ice_optics.F90editsrc/physics/cam/cloud_rad_props.F90editsrc/physics/rrtmgp/radiation.F90editcime_config/testdefs/testlist_cam.xmleditbld/configureeditdoc/ChangeLogaddsrc/physics/cam/oldcloud_optics.F90addsrc/physics/cam/slingo_liq_optics.F90input_names.F9089925a4e642c7993be58226934ff9a3cdf9a0d791706760368000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving backslashes. These should be slashes, but gnu,intel,nvidia generate code that treats slashes as whitespace and backslashes as a character, while cray treats backslashes as whitespace as well. This is easily fixed by using quotes, and in the meantime we will change the backslashes to forward slashes. See https://github.com/larson-group/clubb/issues/1138\#issuecomment-1910844013 2024-01-31 22:06:08 -060089925a4e642c7993be58226934ff9a3cdf9a0d79Removing backslashes. These should be slashes, but gnu,intel,nvidia generate code that treats slashes as whitespace and backslashes as a character, while cray treats backslashes as whitespace as well. This is easily fixed by using quotes, and in the meantime we will change the backslashes to forward slashes. See https://github.com/larson-group/clubb/issues/1138\#issuecomment-1910844013editinput_names.F90test/system/TR8.shffec5d1e2301aa8a93197970e5baf53c186d35991706801711000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduskip over geoschem in r8 kind checker 2024-02-01 08:35:11 -0700ffec5d1e2301aa8a93197970e5baf53c186d3599skip over geoschem in r8 kind checkeredittest/system/TR8.shdoc/ChangeLoga5e78df39702959a7dd69d504927bdd69f98934d1706805432000http://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenelundgren@seas.harvard.eduUpdate Changelog Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu> 2024-02-01 09:37:12 -0700a5e78df39702959a7dd69d504927bdd69f98934dUpdate Changelogeditdoc/ChangeLogcime_config/testdefs/testlist_cam.xml4442c2a2a783ba65be5bd519c67339530a2c9f4f1706806633000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude commit and time limit to goes-chem tests 2024-02-01 09:57:13 -07004442c2a2a783ba65be5bd519c67339530a2c9f4finclude commit and time limit to goes-chem testseditcime_config/testdefs/testlist_cam.xmlsetup.cfgsetup.pysrc/git-fleximod13a2f6b25dda439e74396073b52c3d748b838ea61706815318000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educleaner format for status output, fix for special handling of ssh submodules, fix for 0 length log 2024-02-01 12:21:58 -070013a2f6b25dda439e74396073b52c3d748b838ea6cleaner format for status output, fix for special handling of ssh submodules, fix for 0 length logeditsrc/git-fleximodeditsetup.cfgeditsetup.pysrc/git-fleximodc21372a088fa6a72c01397eb8c955b5e5cf411d81706817862000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educheck for permission in fleximod.log file 2024-02-01 13:04:22 -0700c21372a088fa6a72c01397eb8c955b5e5cf411d8check for permission in fleximod.log fileeditsrc/git-fleximodsrc/git-fleximod07eb5dd3edcde5bfd1f125c85d6935bd0fa3b3cc1706821354000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue with ssh submodule checkout 2024-02-01 14:02:34 -070007eb5dd3edcde5bfd1f125c85d6935bd0fa3b3ccfix issue with ssh submodule checkouteditsrc/git-fleximodsrc/git-fleximoda12a5b051580b5f26048ab87ffe0521e4ba135ef1706822561000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd --force option and cowardly refusal 2024-02-01 14:22:41 -0700a12a5b051580b5f26048ab87ffe0521e4ba135efadd --force option and cowardly refusaleditsrc/git-fleximodsrc/git-fleximodce22059f0f860c9e9f0961ee2637d21d967facfb1706823428000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edustart at root git dir unless --path flag is used 2024-02-01 14:37:08 -0700ce22059f0f860c9e9f0961ee2637d21d967facfbstart at root git dir unless --path flag is usededitsrc/git-fleximodsrc/git-fleximod8b7267959971c16d66803d92faa833055a8ff2131706823790000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove test from visable options 2024-02-01 14:43:10 -07008b7267959971c16d66803d92faa833055a8ff213remove test from visable optionseditsrc/git-fleximodsetup.cfga990864cef359b6a2f6e9a75f420ec05f669f8941706834061000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comupdate setup.cfg 2024-02-01 17:34:21 -0700a990864cef359b6a2f6e9a75f420ec05f669f894update setup.cfgeditsetup.cfgsetup.pyd2123b6022ad648ca78241a155fed93d13642ff41706834083000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comupdates for setup.py 2024-02-01 17:34:43 -0700d2123b6022ad648ca78241a155fed93d13642ff4updates for setup.pyeditsetup.pysetup.cfg89dfbbe5e6a6d2ba532d4ec8a05ddd83ed3abb791706834359000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comsetup.cfg 2024-02-01 17:39:19 -070089dfbbe5e6a6d2ba532d4ec8a05ddd83ed3abb79setup.cfgeditsetup.cfgsetup.cfg3fdff62ff545bf6fda5c7e475e7fc2c98f1e1f121706834873000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.compointing to the better solution 2024-02-01 17:47:53 -07003fdff62ff545bf6fda5c7e475e7fc2c98f1e1f12pointing to the better solutioneditsetup.cfgsrc/git-fleximod49e8fadbf834e1c03effd933e7bd5698b7555cc01706836282000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comminimal changes required 2024-02-01 18:11:22 -070049e8fadbf834e1c03effd933e7bd5698b7555cc0minimal changes requirededitsrc/git-fleximodsetup.cfg8c09b5b016629660613f0c0acb3889c5b8d5209b1706836979000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comupdates to setup.cfg 2024-02-01 18:22:59 -07008c09b5b016629660613f0c0acb3889c5b8d5209bupdates to setup.cfgeditsetup.cfgsetup.cfga9bd103363ec9fe041daf4ee36bc915fe7209e151706837002000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comminor changes 2024-02-01 18:23:22 -0700a9bd103363ec9fe041daf4ee36bc915fe7209e15minor changeseditsetup.cfgsetup.cfg3b82247ef72c9c3f2f9e4d5697bbb735bb7181d21706837189000http://carson.math.uwm.edu/jenkins/user/negin513negin513negin513@gmail.comfix syntax and new function name 2024-02-01 18:26:29 -07003b82247ef72c9c3f2f9e4d5697bbb735bb7181d2fix syntax and new function nameeditsetup.cfgsrc/git-fleximod23e0813eb3340dd410e989a48a7b753a69d0ae741706883674000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edunames were too similar, force needs to be optional 2024-02-02 07:21:14 -070023e0813eb3340dd410e989a48a7b753a69d0ae74names were too similar, force needs to be optionaleditsrc/git-fleximoddoc/ChangeLog86720ccfd55278efd108ae06c58dc635c63823d11706890106000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ChangLog 2024-02-02 09:08:26 -070086720ccfd55278efd108ae06c58dc635c63823d1update ChangLogeditdoc/ChangeLogsetup.pysrc/git-fleximodae4c9c5962fe0ddbcc8043d9a647115dfb7e89e81706891433000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumore cleanup 2024-02-02 09:30:33 -0700ae4c9c5962fe0ddbcc8043d9a647115dfb7e89e8more cleanupeditsrc/git-fleximodeditsetup.pysetup.pysrc/fleximod/gitmodules.pysrc/git-fleximodsrc/fleximod/gitinterface.pysrc/fleximod/version.pysrc/fleximod/lstripreader.py140529afedf13f88ba3673526917d6dd27750c3e1706893215000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edupre-commit cleanup 2024-02-02 10:00:15 -0700140529afedf13f88ba3673526917d6dd27750c3epre-commit cleanupeditsrc/fleximod/version.pyeditsrc/fleximod/gitinterface.pyeditsrc/git-fleximodeditsetup.pyeditsrc/fleximod/gitmodules.pyeditsrc/fleximod/lstripreader.pysetup.py.github/workflows/pre-commit0a5cf50fb696f84ea5a71bcdb973a8972c14bb551706903034000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edusetup.py builds manpage but doesnt install 2024-02-02 12:43:54 -07000a5cf50fb696f84ea5a71bcdb973a8972c14bb55setup.py builds manpage but doesnt installeditsetup.pyadd.github/workflows/pre-commitsrc/fleximod/version.py64e26fc22df3c3faa7190eff289dce5accc886691706903218000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate version 2024-02-02 12:46:58 -070064e26fc22df3c3faa7190eff289dce5accc88669update versioneditsrc/fleximod/version.pyREADME.md2a2ab6503091b3336bf759a32c0874959a275dcd1706903900000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate README 2024-02-02 12:58:20 -07002a2ab6503091b3336bf759a32c0874959a275dcdupdate READMEeditREADME.mdsrc/git-fleximodad0a976b38cd8de97fdce0d04050e412cf2e39051706919326000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd support for fxhash variable in .gitmodules 2024-02-02 17:15:26 -0700ad0a976b38cd8de97fdce0d04050e412cf2e3905add support for fxhash variable in .gitmoduleseditsrc/git-fleximodsrc/classes/gitmodules.pysrc/fleximod/__init__.pysrc/classes/utils.pysetup.pysrc/fleximod/gitmodules.pysrc/__init__.pysrc/classes/version.pysrc/fleximod/gitinterface.pysrc/classes/gitinterface.pysrc/fleximod/utils.pytbump.tomlsrc/classes/__init__.pysrc/git-fleximodsetup.cfgtests/test_import.pypyproject.tomlsrc/fleximod/lstripreader.pysrc/classes/lstripreader.pysrc/fleximod/version.pytests/__init__.pybf56a97251d0f5e5e84910a56e4c8e3036d6b0571706984823000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduworking on poetry 2024-02-03 11:27:03 -0700bf56a97251d0f5e5e84910a56e4c8e3036d6b057working on poetryaddsrc/classes/version.pyaddtests/__init__.pydeletesetup.pydeletesrc/fleximod/utils.pyaddsrc/classes/__init__.pyaddtbump.tomldeletesetup.cfgdeletesrc/fleximod/gitmodules.pyaddtests/test_import.pyaddsrc/classes/utils.pydeletesrc/fleximod/lstripreader.pyeditsrc/git-fleximoddeletesrc/fleximod/__init__.pyaddsrc/classes/gitmodules.pyaddsrc/classes/lstripreader.pyaddpyproject.tomldeletesrc/fleximod/version.pyaddsrc/__init__.pydeletesrc/fleximod/gitinterface.pyaddsrc/classes/gitinterface.pydoc/Makefiledoc/conf.pydoc/make.batsrc/classes/cli.pytbump.tomlsrc/git-fleximodpyproject.tomlsrc/classes/version.pydoc/index.rst4f3bb556e165f9f1087de841c9b408cedb62f4a31706993964000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumore poetry and sphinx 2024-02-03 13:59:24 -07004f3bb556e165f9f1087de841c9b408cedb62f4a3more poetry and sphinxadddoc/Makefileadddoc/index.rsteditsrc/git-fleximodadddoc/conf.pyadddoc/make.bataddsrc/classes/cli.pydeletesrc/classes/version.pyedittbump.tomleditpyproject.tomlpyproject.tomltbump.tomlsrc/classes/cli.py461ee4be93bc63eb9c735e03a7ce12c04ff3fe841706994127000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.5.0 2024-02-03 14:02:07 -0700461ee4be93bc63eb9c735e03a7ce12c04ff3fe84Bump to 0.5.0edittbump.tomleditsrc/classes/cli.pyeditpyproject.tomlgit_fleximod/gitinterface.pysrc/classes/gitmodules.pysrc/classes/utils.pysrc/__init__.pygit_fleximod/utils.pygit_fleximod/gitmodules.pygit_fleximod/git-fleximod.pysrc/classes/gitinterface.pysrc/classes/cli.pygit_fleximod/__init__.pygit_fleximod/lstripreader.pysrc/classes/__init__.pysrc/git-fleximodgit_fleximod/cli.pypyproject.tomlsrc/classes/lstripreader.pyf0ab8150ba149c42d4690aa8964754bd58225a111707063355000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edureformed to work with poetry 2024-02-04 09:15:55 -0700f0ab8150ba149c42d4690aa8964754bd58225a11reformed to work with poetryaddgit_fleximod/utils.pyaddgit_fleximod/lstripreader.pydeletesrc/classes/lstripreader.pydeletesrc/classes/utils.pyaddgit_fleximod/gitinterface.pyaddgit_fleximod/gitmodules.pydeletesrc/git-fleximoddeletesrc/classes/gitmodules.pydeletesrc/__init__.pyaddgit_fleximod/cli.pyaddgit_fleximod/git-fleximod.pyeditpyproject.tomldeletesrc/classes/cli.pydeletesrc/classes/__init__.pyaddgit_fleximod/__init__.pydeletesrc/classes/gitinterface.pytests/test_import.py7b2a86dcfdcc039034c2ad2e2b69103ac5bf319f1707063729000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd a simple import test 2024-02-04 09:22:09 -07007b2a86dcfdcc039034c2ad2e2b69103ac5bf319fadd a simple import testedittests/test_import.pypyproject.tomldoc/index.rste7fdd39fd8df3b829196f276e21c7945fd71401e1707067830000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edunow includes man pages 2024-02-04 10:30:30 -0700e7fdd39fd8df3b829196f276e21c7945fd71401enow includes man pageseditpyproject.tomleditdoc/index.rsttbump.toml26739ada8bf21eda4aefabdf8219ade9e09e473e1707145784000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate tbump path 2024-02-05 08:09:44 -070026739ada8bf21eda4aefabdf8219ade9e09e473eupdate tbump pathedittbump.tomlpyproject.tomltbump.tomlgit_fleximod/cli.py25bcc7ea7ac8cf9e02c5dfbcd81f257c6f50b21a1707145793000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.6.0 2024-02-05 08:09:53 -070025bcc7ea7ac8cf9e02c5dfbcd81f257c6f50b21aBump to 0.6.0edittbump.tomleditpyproject.tomleditgit_fleximod/cli.pygit_fleximod/git-fleximod.pypyproject.tomlgit_fleximod/git_fleximod.pypoetry.locked01cb7a0f07e1c79136b50f6448463a45538acb1707149214000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue with hyphen 2024-02-05 09:06:54 -0700ed01cb7a0f07e1c79136b50f6448463a45538acbfix issue with hyphenaddpoetry.lockeditpyproject.tomldeletegit_fleximod/git-fleximod.pyaddgit_fleximod/git_fleximod.pypyproject.tomltbump.tomlgit_fleximod/cli.py69a5dc5ae30514b2cefe8ee827b6d2a5e4322db91707149230000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.6.1 2024-02-05 09:07:10 -070069a5dc5ae30514b2cefe8ee827b6d2a5e4322db9Bump to 0.6.1editpyproject.tomleditgit_fleximod/cli.pyedittbump.tomlbld/namelist_files/namelist_defaults_cam.xml26e6306f758e2d547862dab70ba90b9f25c9921e1707172696000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate topo file path to official inputdata repo path in namelist defaults file. 2024-02-05 15:38:16 -070026e6306f758e2d547862dab70ba90b9f25c9921eUpdate topo file path to official inputdata repo path in namelist defaults file.editbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90ccb49739c8ca84ea22802ebd720d88e7185e33d81707232399000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduuse broadband flux objects for clear-sky calcs 2024-02-06 10:13:19 -0500ccb49739c8ca84ea22802ebd720d88e7185e33d8use broadband flux objects for clear-sky calcseditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90doc/ChangeLogsrc/physics/rrtmgp/rrtmgp_inputs.F90test/system/TR8.sh0ac117364976e955f497189c153f325f00c54ba31707242422000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-02-06 13:00:22 -05000ac117364976e955f497189c153f325f00c54ba3address review commentseditdoc/ChangeLogedittest/system/TR8.sheditsrc/physics/rrtmgp/rrtmgp_inputs.F90git_fleximod/git_fleximod.pyf456ca059ccd6bfacd15dce2b302eafb6c09ce2c1707245142000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue with sparse checkout dir path 2024-02-06 11:45:42 -0700f456ca059ccd6bfacd15dce2b302eafb6c09ce2cfix issue with sparse checkout dir patheditgit_fleximod/git_fleximod.pypyproject.tomltbump.tomlgit_fleximod/cli.pyac3e6ddc7f1fddc3066d81a61aa7a042683315cb1707250348000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.6.2 2024-02-06 13:12:28 -0700ac3e6ddc7f1fddc3066d81a61aa7a042683315cbBump to 0.6.2editgit_fleximod/cli.pyedittbump.tomleditpyproject.tomlsrc/physics/rrtmgp/rrtmgp_inputs.F90bld/namelist_files/namelist_defaults_cam.xmle6f1f709bce92c5b7492f5fd173eedd253d355711707269559000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix filename in namelist defaults file 2024-02-06 20:32:39 -0500e6f1f709bce92c5b7492f5fd173eedd253d35571fix filename in namelist defaults fileeditbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/rrtmgp/rrtmgp_inputs.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F90f66e6de3fd5790a95a3e2ac792e58129985540fe1707345359000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing a bug where the Lscale used in calculating the damping coefficient in advance_xm_wpxp_module.F90 should be Lscale_zm, since the term is calculated on momentum grid levels. Along the way, I found out that I could streamline the code by passing in the value of Lscale_zm that was already calculated (interpolated from Lscale) in advance_clubb_core. This value could be passed into both advance_xm_wpxp and calc_stability_correction, and then fed down. This results of this code change are bit-for-bit identical with the previous revision, most likely because this code only matters when certain flags are flipped that are not used by default. 2024-02-07 16:35:59 -0600f66e6de3fd5790a95a3e2ac792e58129985540feFixing a bug where the Lscale used in calculating the dampingeditadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editadvance_helper_module.F90Externals.cfgeca1a90650308998e710ed9e272527cc9f5929c71707349164000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate externals to match alpha17a 2024-02-07 16:39:24 -0700eca1a90650308998e710ed9e272527cc9f5929c7update externals to match alpha17aeditExternals.cfgmodel_flags.F90aa0b5742c1ecb87b896f03ad526ad9483bcc707d1707410339000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comadding equals sign cuz I've had it up to here with this typo! 2024-02-08 09:38:59 -0700aa0b5742c1ecb87b896f03ad526ad9483bcc707dadding equals sign cuz I've had it up to here with this typo!editmodel_flags.F90cime_config/buildnmlcime_config/buildlib26aee68ad5afbca0f3af46fd09d8c7396aafd38b1707415853000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRemove use of deprecated 'imp' module in python scripts (Github issue #970). 2024-02-08 11:10:53 -070026aee68ad5afbca0f3af46fd09d8c7396aafd38bRemove use of deprecated 'imp' module in python scripts (Github issue #970).editcime_config/buildnmleditcime_config/buildlibgit_fleximod/gitinterface.pytests/test_a_import.pytests/test_sparse_checkout.pytests/test_import.pypyproject.tomlpoetry.locktests/test_checkout.py96ac371975428ddebf7744bf9304f7496c66a9591707514870000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd tests 2024-02-09 14:41:10 -070096ac371975428ddebf7744bf9304f7496c66a959add testseditgit_fleximod/gitinterface.pyaddtests/test_sparse_checkout.pyeditpoetry.lockaddtests/test_a_import.pydeletetests/test_import.pyeditpyproject.tomladdtests/test_checkout.py.github/workflows/pytest.yaml8e04947c985c02063c246d20ac5b1ef4ecd18fd41707519118000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd pytest to workflow 2024-02-09 15:51:58 -07008e04947c985c02063c246d20ac5b1ef4ecd18fd4add pytest to workflowadd.github/workflows/pytest.yaml.github/workflows/pytest.yamlc1aef37f7b1e0b30399ed20d093a0756e658b25c1707519162000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd pytest to workflow 2024-02-09 15:52:42 -0700c1aef37f7b1e0b30399ed20d093a0756e658b25cadd pytest to workflowedit.github/workflows/pytest.yamltests/conftest.pye8b6d3cc382785d787ee5fc482a974ef0c1be2b81707519332000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd pytest fixtures 2024-02-09 15:55:32 -0700e8b6d3cc382785d787ee5fc482a974ef0c1be2b8add pytest fixturesaddtests/conftest.pygit_fleximod/git_fleximod.pypyproject.tomltests/conftest.pytests/test_sparse_checkout.pyREADME.mdtests/test_checkout.pyc1edd2c894d6f28903c70caa2ff5c7a6e892da261707673794000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall working 2024-02-11 10:49:54 -0700c1edd2c894d6f28903c70caa2ff5c7a6e892da26all workingedittests/conftest.pyedittests/test_sparse_checkout.pyeditgit_fleximod/git_fleximod.pyeditREADME.mdeditpyproject.tomledittests/test_checkout.pytests/conftest.pytests/test_checkout.pytests/test_sparse_checkout.py03156218c7ddf4387fd5a8b74b8550ddae7d08da1707677240000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educlean up and combine tests 2024-02-11 11:47:20 -070003156218c7ddf4387fd5a8b74b8550ddae7d08daclean up and combine testsedittests/test_checkout.pydeletetests/test_sparse_checkout.pyedittests/conftest.pytests/conftest.py9602eb0b777c3e174027bc9ea121da907879bac61707687818000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall tests passing 2024-02-11 14:43:38 -07009602eb0b777c3e174027bc9ea121da907879bac6all tests passingedittests/conftest.pytests/test_required.pyb5c4515d0e9d1a48de659f96da99e6a8f3c20ed51707691958000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduthought it was working?? 2024-02-11 15:52:38 -0700b5c4515d0e9d1a48de659f96da99e6a8f3c20ed5thought it was working??addtests/test_required.pysrc/physics/cam/slingo_liq_optics.F90src/physics/cam/cospsimulator_intr.F90src/physics/camrt/radsw.F90src/physics/rrtmg/radiation.F90src/physics/rrtmg/aer_src/rrtmg_sw_reftra.f90bld/configuresrc/physics/cam/aer_rad_props.F90src/physics/rrtmgp/radconstants.F90src/physics/rrtmgp/mcica_subcol_gen.F90src/physics/rrtmgp/radiation.F90src/physics/rrtmg/radsw.F90src/physics/camrt/radiation.F90src/physics/cam/cloud_rad_props.F90src/physics/cam/ebert_curry_ice_optics.F9029da94d36769ec616148741650ca9a9d8a35b43b1707835247000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-02-13 09:40:47 -050029da94d36769ec616148741650ca9a9d8a35b43baddress review commentseditsrc/physics/cam/ebert_curry_ice_optics.F90editbld/configureeditsrc/physics/cam/slingo_liq_optics.F90editsrc/physics/cam/cloud_rad_props.F90editsrc/physics/rrtmg/radsw.F90editsrc/physics/rrtmg/radiation.F90editsrc/physics/rrtmgp/radiation.F90editsrc/physics/rrtmg/aer_src/rrtmg_sw_reftra.f90editsrc/physics/camrt/radiation.F90editsrc/physics/camrt/radsw.F90editsrc/physics/rrtmgp/radconstants.F90editsrc/physics/cam/cospsimulator_intr.F90editsrc/physics/cam/aer_rad_props.F90editsrc/physics/rrtmgp/mcica_subcol_gen.F90stats_zt_module.F907533e5fc4247ea19f60309050610a3f35229436a1707839985000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comfixing bug, name of wm_zt was left as "wm" 2024-02-13 09:59:45 -06007533e5fc4247ea19f60309050610a3f35229436afixing bug, name of wm_zt was left as "wm"editstats_zt_module.F90tests/test_required.pytests/conftest.pytests/test_complex.pytests/test_checkout.pya3ce6116065af2e8e86bd3d7d6de06bc215a6e581707864655000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutest_complex is still a work in progress 2024-02-13 15:50:55 -0700a3ce6116065af2e8e86bd3d7d6de06bc215a6e58test_complex is still a work in progressedittests/test_required.pyedittests/conftest.pyaddtests/test_complex.pyedittests/test_checkout.pytests/test_update.pytests/test_sparse_update.pygit_fleximod/git_fleximod.pytests/test_checkout.pytests/test_sparse_checkout.py8af16188fe7c531f3e651000505c06751784e9881707865713000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate should checkout if needed 2024-02-13 16:08:33 -07008af16188fe7c531f3e651000505c06751784e988update should checkout if neededdeletetests/test_checkout.pyaddtests/test_update.pyaddtests/test_sparse_update.pyeditgit_fleximod/git_fleximod.pydeletetests/test_sparse_checkout.pytests/test_d_complex.pytests/test_c_required.pytests/conftest.pytests/test_b_update.py7c47c05ffbd4d329e94ada655c9a467e8f9685851707927523000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edurestructure of tests working 2024-02-14 09:18:43 -07007c47c05ffbd4d329e94ada655c9a467e8f968585restructure of tests workingedittests/test_d_complex.pyedittests/test_b_update.pyedittests/conftest.pyedittests/test_c_required.pyclubb_api_module.F909719713bc9b25dda36e2a076736d36d8052eb2a71707948133000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line in order to trigger Jenkins tests for CAM In particular, Brian Griffin's code change from 7 Feb 2024, BIT_CHANGING:595e2c13024c1e913815d56ae724823a82bddc03 changes answers when using l_diag_Lscale_from_tau=.false. This code change was brought into the CAM repo in this commit: BIT_CHANGING:d275ac17f3e53d65641c3210df33ce0fad4e5aef 2024-02-14 16:02:13 -06009719713bc9b25dda36e2a076736d36d8052eb2a7Add blank line in order to trigger Jenkins tests for CAMeditclubb_api_module.F90mixing_length.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90constants_clubb.F90pdf_closure_module.F90sfc_varnce_module.F90advance_helper_module.F90mono_flux_limiter.F904e3c5f2e0080925f0890ec6e36446f5dc1a67d851708052285000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSmall acc tweaks (#1144) * Removing unneccesary acc declare statements. * Removing use of acc routine in favor of new 1D array routine for smooth_max. * The new tmp_calc_ngrdcol should be copied regardless of flag * tmp_calc_ngrdcol also needs to be deleted unconditionally. * Making separate conditional acc copy for edsclrdim variables. * Adding ifdefs around prints inside of openacc kernel * Making erf_cache and exp_cache scalars, there was no need for them to be arrays. * Making update host statements with sclr_dim or edsclr_dim conditional. Without these we get runtime errors with cray+openacc * Removed files 2024-02-15 20:58:05 -06004e3c5f2e0080925f0890ec6e36446f5dc1a67d85Small acc tweaks (#1144)editadvance_clubb_core_module.F90editadvance_helper_module.F90editpdf_closure_module.F90editsfc_varnce_module.F90editmixing_length.F90editconstants_clubb.F90editmono_flux_limiter.F90editclubb_api_module.F90editmodel_flags.F90tests/test_d_complex.pytests/test_c_required.pygit_fleximod/git_fleximod.pytests/conftest.pyREADME.mde6d4838ebeee5a7ce408aa098d9cfab0cd34d4051708130426000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall tests are passing and complete 2024-02-16 17:40:26 -0700e6d4838ebeee5a7ce408aa098d9cfab0cd34d405all tests are passing and completeedittests/test_d_complex.pyedittests/conftest.pyeditgit_fleximod/git_fleximod.pyeditREADME.mdedittests/test_c_required.py.github/workflows/pytest.yaml194d845ad2131c7ce50e1f5a14fc5476799c87fb1708182537000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd git user info to tests 2024-02-17 08:08:57 -0700194d845ad2131c7ce50e1f5a14fc5476799c87fbadd git user info to testsedit.github/workflows/pytest.yamlgit_fleximod/cli.pyd64c5c6dd311364cc98ffc5ca39be425437e377c1708182877000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove checkout user option 2024-02-17 08:14:37 -0700d64c5c6dd311364cc98ffc5ca39be425437e377cremove checkout user optioneditgit_fleximod/cli.pygit_fleximod/git_fleximod.pytests/conftest.py6bac7946376f7ae85511b4ed02ad4881f9e0440d1708188234000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove fxhash, putting hash in tag works fine 2024-02-17 09:43:54 -07006bac7946376f7ae85511b4ed02ad4881f9e0440dremove fxhash, putting hash in tag works fineedittests/conftest.pyeditgit_fleximod/git_fleximod.pypyproject.toml678bae800ca818a0dd458dbc39334007da8f973d1708276145000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate version 2024-02-18 10:09:05 -0700678bae800ca818a0dd458dbc39334007da8f973dupdate versioneditpyproject.tomlExternals.cfgea9aaa2d82868bccaa7e1efe775ebad6816276db1708361713000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate cime tag 2024-02-19 09:55:13 -0700ea9aaa2d82868bccaa7e1efe775ebad6816276dbUpdate cime tageditExternals.cfgsrc/dynamics/se/dycore/fvm_mapping.F9043f4b095283f0d64645f350febe9897bfe8c8bc51708364645000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edustat check 2024-02-19 10:44:05 -070043f4b095283f0d64645f350febe9897bfe8c8bc5stat checkeditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/fvm_mapping.F90bf7635adc8f1b7a6b67b53952bc7cc10360fcc5e1708364747000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90 Co-authored-by: Jesse Nusbaumer <nusbaume@ucar.edu> 2024-02-19 10:45:47 -0700bf7635adc8f1b7a6b67b53952bc7cc10360fcc5eUpdate src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/global_norms_mod.F905338d363498c6ec9fd85bd0412cbd672e04eac9e1708365518000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange comment 2024-02-19 10:58:38 -07005338d363498c6ec9fd85bd0412cbd672e04eac9echange commenteditsrc/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dyn_comp.F9044703192846364336590b3d9548697d6c4bec9471708365863000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor mod 2024-02-19 11:04:23 -070044703192846364336590b3d9548697d6c4bec947minor modeditsrc/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/fvm_mapping.F90379f23fa9ddf5d115d2aadb37450567f62e09d1f1708365966000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix compiltation error 2024-02-19 11:06:06 -0700379f23fa9ddf5d115d2aadb37450567f62e09d1ffix compiltation erroreditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dyn_grid.F9096e163ce63838d7dd1e077f53252e3233c5248fc1708366040000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor mod 2024-02-19 11:07:20 -070096e163ce63838d7dd1e077f53252e3233c5248fcminor modeditsrc/dynamics/se/dyn_grid.F90src/physics/cam/vertical_diffusion.F90597177a6d704324e7111e4a0ec952e637413d49a1708366142000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/physics/cam/vertical_diffusion.F90 Co-authored-by: Jesse Nusbaumer <nusbaume@ucar.edu> 2024-02-19 11:09:02 -0700597177a6d704324e7111e4a0ec952e637413d49aUpdate src/physics/cam/vertical_diffusion.F90editsrc/physics/cam/vertical_diffusion.F90src/dynamics/se/dyn_comp.F9084db8635860c9f2aebbde827d8ab086e62be060b1708366336000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduminor clean-up 2024-02-19 11:12:16 -070084db8635860c9f2aebbde827d8ab086e62be060bminor clean-upeditsrc/dynamics/se/dyn_comp.F90src/dynamics/se/dycore/fvm_mapping.F9015826b3809d4195544f808549168eedaf008d6631708366440000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2024-02-19 11:14:00 -070015826b3809d4195544f808549168eedaf008d663Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/fvm_mapping.F90fdac7d4185a31f2d934b8d7fe85fd933a7a2b3491708366452000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2024-02-19 11:14:12 -0700fdac7d4185a31f2d934b8d7fe85fd933a7a2b349Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/fvm_mapping.F90adb4a83b25d1e2439a71b21d9de26b4e4cc567ad1708366589000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd comment 2024-02-19 11:16:29 -0700adb4a83b25d1e2439a71b21d9de26b4e4cc567adadd commenteditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/fvm_mapping.F90ff0e805b899a3a85ad64a72b1e1b35d866110f151708366686000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd comment 2024-02-19 11:18:06 -0700ff0e805b899a3a85ad64a72b1e1b35d866110f15add commenteditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dp_coupling.F905fa87c20fc7cb9aaea0f128b0869c3426311e7e61708366773000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dp_coupling.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2024-02-19 11:19:33 -07005fa87c20fc7cb9aaea0f128b0869c3426311e7e6Update src/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dp_coupling.F90src/dynamics/se/dp_coupling.F90eeae0a7ac896f82e924564d093cbb0eaca48dd861708366809000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dp_coupling.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2024-02-19 11:20:09 -0700eeae0a7ac896f82e924564d093cbb0eaca48dd86Update src/dynamics/se/dp_coupling.F90editsrc/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/fvm_mapping.F90b91b56934b221f9ad1f3d8eacbe25aaded5f48301708366859000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate src/dynamics/se/dycore/fvm_mapping.F90 Co-authored-by: Francis Vitt <fvitt@ucar.edu> 2024-02-19 11:20:59 -0700b91b56934b221f9ad1f3d8eacbe25aaded5f4830Update src/dynamics/se/dycore/fvm_mapping.F90editsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/fvm_mapping.F90be0597fb9cb25989b4304457245205d068a03ca81708367052000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduadd description 2024-02-19 11:24:12 -0700be0597fb9cb25989b4304457245205d068a03ca8add descriptioneditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/global_norms_mod.F90bb4ba338824ae681e2634b19718b85e4653b238e1708367267000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edusimplify code 2024-02-19 11:27:47 -0700bb4ba338824ae681e2634b19718b85e4653b238esimplify codeeditsrc/dynamics/se/dycore/global_norms_mod.F90src/dynamics/se/dycore/fvm_mapping.F90e32a843446ed92f0808d512b1a7afa807fc0cef11708367354000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix 2024-02-19 11:29:14 -0700e32a843446ed92f0808d512b1a7afa807fc0cef1fixeditsrc/dynamics/se/dycore/fvm_mapping.F90src/dynamics/se/dycore/prim_driver_mod.F904f1f577ca83f452ae21b325d74226657decfbbc91708367444000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix indentation 2024-02-19 11:30:44 -07004f1f577ca83f452ae21b325d74226657decfbbc9fix indentationeditsrc/dynamics/se/dycore/prim_driver_mod.F90src/physics/cam/vertical_diffusion.F901ba50bbac4db752d6477d72d70dff8eeeb656ce91708367689000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edureduce code length 2024-02-19 11:34:49 -07001ba50bbac4db752d6477d72d70dff8eeeb656ce9reduce code lengtheditsrc/physics/cam/vertical_diffusion.F90src/dynamics/se/dp_coupling.F908a20418cb3b101de40ef0058ff7b8d213405b8dd1708368031000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix compilation error 2024-02-19 11:40:31 -07008a20418cb3b101de40ef0058ff7b8d213405b8ddfix compilation erroreditsrc/dynamics/se/dp_coupling.F90src/dynamics/se/dycore/prim_driver_mod.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/dycore_budget.F90cd12ccc5aac5ee8808a16c39c4a3733f869c73211708380732000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix dycore budgets 2024-02-19 15:12:12 -0700cd12ccc5aac5ee8808a16c39c4a3733f869c7321fix dycore budgetseditsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/dycore_budget.F90editsrc/dynamics/se/dyn_comp.F90cime_config/testdefs/testlist_cam.xml02abc17857e996b652a24f3ab15d85f9a440d1971708388499000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-02-19 19:21:39 -050002abc17857e996b652a24f3ab15d85f9a440d197address review commentseditcime_config/testdefs/testlist_cam.xmlcime_config/SystemTests/tmc.py89a46e6bf386a72a196f20331e09bb8d1425f66f1708471717000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate TMC test 2024-02-20 16:28:37 -070089a46e6bf386a72a196f20331e09bb8d1425f66fUpdate TMC testeditcime_config/SystemTests/tmc.pydoc/ChangeLog538a35673ef1f1a3b374f0cf10ca93c6b2a4b7dc1708541737000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-02-21 13:55:37 -0500538a35673ef1f1a3b374f0cf10ca93c6b2a4b7dcupdate ChangeLogeditdoc/ChangeLogcime_config/testdefs/testlist_cam.xmlExternals.cfgcime_config/buildnml2a08713a6c82a4babbf0390ae48742fc9d869c7d1708542816000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix failing tests 2024-02-21 12:13:36 -07002a08713a6c82a4babbf0390ae48742fc9d869c7dFix failing testseditcime_config/buildnmleditcime_config/testdefs/testlist_cam.xmleditExternals.cfgcime_config/testdefs/testlist_cam.xml7423b5a7628f162f1ef5f609c551ef67719d8daf1708551824000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd a couple more prealpha tests 2024-02-21 14:43:44 -07007423b5a7628f162f1ef5f609c551ef67719d8dafAdd a couple more prealpha testseditcime_config/testdefs/testlist_cam.xmlgit_fleximod/gitinterface.pygit_fleximod/metoflexi.pypyproject.tomlgit_fleximod/gitmodules.py8d0ed18d3a7f30048aa4b302eb607e27bf1d45ff1708619159000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd translater from manage_externals 2024-02-22 09:25:59 -07008d0ed18d3a7f30048aa4b302eb607e27bf1d45ffadd translater from manage_externalseditpyproject.tomladdgit_fleximod/metoflexi.pyeditgit_fleximod/gitinterface.pyeditgit_fleximod/gitmodules.pydoc/ChangeLog25155844c69fa2b72ed046e8c09c0e865e43cab51708623955000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_149 2024-02-22 10:45:55 -070025155844c69fa2b72ed046e8c09c0e865e43cab5Update ChangeLog for cam6_3_149editdoc/ChangeLogdoc/ChangeLogsrc/dynamics/se/dycore/fvm_mapping.F90948b0a822c0d736fdf0bdb4fb3406ef6566274c71708639934000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd allocation checks and update ChangeLog. 2024-02-22 15:12:14 -0700948b0a822c0d736fdf0bdb4fb3406ef6566274c7Add allocation checks and update ChangeLog.editdoc/ChangeLogeditsrc/dynamics/se/dycore/fvm_mapping.F90doc/ChangeLogc4eb85c5841c8d6ee6e707a3798b34bb4a7706fb1708713639000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho6.hsn.de.hpc.ucar.educhangelog updates 2024-02-23 11:40:39 -0700c4eb85c5841c8d6ee6e707a3798b34bb4a7706fbchangelog updateseditdoc/ChangeLogsrc/dynamics/se/dycore/fvm_mapping.F90ea364f9d3de8a0c400d80f610b696e1e8a3db74f1708723006000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange allocation size 2024-02-23 14:16:46 -0700ea364f9d3de8a0c400d80f610b696e1e8a3db74fchange allocation sizeeditsrc/dynamics/se/dycore/fvm_mapping.F90bld/namelist_files/namelist_defaults_cam.xmlfc6af9b673352a7b0c20c03c6545b2eb8f7e14e01708725022000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate namelist settings 2024-02-23 14:50:22 -0700fc6af9b673352a7b0c20c03c6545b2eb8f7e14e0Update namelist settingseditbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/vertical_diffusion.F9011a5276617e4b2e643b883352090f7b406e1fd421708726347000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edurestructure code 2024-02-23 15:12:27 -070011a5276617e4b2e643b883352090f7b406e1fd42restructure codeeditsrc/physics/cam/vertical_diffusion.F90src/dynamics/se/se_single_column_mod.F906e9b777dac26f61b5c27a673696bcfdfba62bffc1708960652000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comcheck for error with mpi_bcast calls 2024-02-26 08:17:32 -07006e9b777dac26f61b5c27a673696bcfdfba62bffccheck for error with mpi_bcast callseditsrc/dynamics/se/se_single_column_mod.F90src/physics/cam/vertical_diffusion.F9051478ad411b01f728970d4ed6d69d1774e29bf011709047679000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduAdd 'allocated' check for kvm_sponge. 2024-02-27 08:27:59 -070051478ad411b01f728970d4ed6d69d1774e29bf01Add 'allocated' check for kvm_sponge.editsrc/physics/cam/vertical_diffusion.F90src/physics/cam/vertical_diffusion.F906719ede7ee62e6e8f0663694e027e430ab83da7f1709047889000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRe-add mistakenly deleted if statement. 2024-02-27 08:31:29 -07006719ede7ee62e6e8f0663694e027e430ab83da7fRe-add mistakenly deleted if statement.editsrc/physics/cam/vertical_diffusion.F90src/physics/cam/vertical_diffusion.F90e48c32ed6a6bd98b0400f98dd697f8052ab03a391709055340000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduDon't allocate kvm_sponge if it is not being used. 2024-02-27 10:35:40 -0700e48c32ed6a6bd98b0400f98dd697f8052ab03a39Don't allocate kvm_sponge if it is not being used.editsrc/physics/cam/vertical_diffusion.F90git_fleximod/git_fleximod.pygit_fleximod/metoflexi.pyREADME.md91df5a0ea5f8601c01c0462cf7e9a8aca84f2aa31709161242000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate README and improve me2flexi 2024-02-28 16:00:42 -070091df5a0ea5f8601c01c0462cf7e9a8aca84f2aa3update README and improve me2flexieditgit_fleximod/git_fleximod.pyeditgit_fleximod/metoflexi.pyeditREADME.mdExternals.cfgsrc/dynamics/fv3/dimensions_mod.F90src/dynamics/fv3/restart_dynamics.F90src/dynamics/fv3/dyn_comp.F90cime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/shell_commandssrc/dynamics/fv3/dyn_grid.F90bld/configuresrc/dynamics/fv3/microphys/module_mp_radar.F90src/dynamics/fv3/microphys/gfdl_cloud_microphys.F90src/dynamics/fv3/dycore_budget.F90src/dynamics/fv3/dp_coupling.F90src/dynamics/fv3/interp_mod.F90src/dynamics/fv3/dycore.F90cime_config/config_pes.xmltest/system/TR8.shsrc/dynamics/fv3/Makefile.in.fv3src/dynamics/fv3/pmgrid.F90Externals_CAM.cfgcime_config/buildlibsrc/dynamics/fv3/stepon.F90src/dynamics/fv3/spmd_dyn.F90d902259009980c7637442aee5b214323a95856731709235877000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edufv3 updates to bring in more current fms tag. Created fv3 interface directory brought in as an external which points back to GFDL to get the fv3 library code 2024-02-29 12:44:37 -0700d902259009980c7637442aee5b214323a9585673fv3 updates to bring in more current fms tag. Created fv3 interface directory brought in as an external which points back to GFDL to get the fv3 library codeeditcime_config/buildlibdeletesrc/dynamics/fv3/spmd_dyn.F90deletesrc/dynamics/fv3/dycore_budget.F90deletesrc/dynamics/fv3/dyn_comp.F90editcime_config/config_pes.xmldeletesrc/dynamics/fv3/microphys/module_mp_radar.F90deletesrc/dynamics/fv3/Makefile.in.fv3deletesrc/dynamics/fv3/dyn_grid.F90deletesrc/dynamics/fv3/pmgrid.F90deletesrc/dynamics/fv3/dp_coupling.F90deletesrc/dynamics/fv3/restart_dynamics.F90deletesrc/dynamics/fv3/stepon.F90deletesrc/dynamics/fv3/interp_mod.F90deletesrc/dynamics/fv3/dimensions_mod.F90deletesrc/dynamics/fv3/dycore.F90editcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/shell_commandsedittest/system/TR8.sheditcime_config/testdefs/testlist_cam.xmldeletesrc/dynamics/fv3/microphys/gfdl_cloud_microphys.F90editExternals.cfgeditExternals_CAM.cfgeditbld/configureREADME_EXTERNALS22fa45e7afa026914e92a0ed156922e767899ddf1709237897000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove obsolete file README_EXTERNALS 2024-02-29 13:18:17 -070022fa45e7afa026914e92a0ed156922e767899ddfRemove obsolete file README_EXTERNALSdeleteREADME_EXTERNALSdoc/ChangeLog7959ffe864c294ab7ac6c3c21993d73a8cfe00791709240149000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduChangeLog updates 2024-02-29 13:55:49 -07007959ffe864c294ab7ac6c3c21993d73a8cfe0079ChangeLog updateseditdoc/ChangeLogpyproject.tomlb7914f26c22704b0aa984bad0978eeb7d88e55e01709245523000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educorrecting version 2024-02-29 15:25:23 -0700b7914f26c22704b0aa984bad0978eeb7d88e55e0correcting versioneditpyproject.tomlpyproject.tomltbump.tomlgit_fleximod/cli.pyff3fcb9587fabfe28e924b2249bcee89bb68d97c1709245538000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.0 2024-02-29 15:25:38 -0700ff3fcb9587fabfe28e924b2249bcee89bb68d97cBump to 0.7.0editpyproject.tomledittbump.tomleditgit_fleximod/cli.pygit_fleximod/git_fleximod.pyfd53786233fd742ec7959908cc8a543dd5315d8f1709302185000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educode cleanup 2024-03-01 07:09:45 -0700fd53786233fd742ec7959908cc8a543dd5315d8fcode cleanupeditgit_fleximod/git_fleximod.pysrc/physics/cam/vertical_diffusion.F9052f7d5b414333faef5d925115e4c62ef4a499c3e1709331648000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix syntax error found during testing. 2024-03-01 15:20:48 -070052f7d5b414333faef5d925115e4c62ef4a499c3eFix syntax error found during testing.editsrc/physics/cam/vertical_diffusion.F90src/dynamics/eul/scmforecast.F90src/dynamics/se/se_single_column_mod.F90src/control/history_scam.F90src/physics/cam/check_energy.F9091af07de2460f612faa465feaafc0415161b6f351709669853000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR requested updates 2024-03-05 13:17:33 -070091af07de2460f612faa465feaafc0415161b6f35PR requested updateseditsrc/dynamics/se/se_single_column_mod.F90editsrc/physics/cam/check_energy.F90editsrc/dynamics/eul/scmforecast.F90editsrc/control/history_scam.F90src/dynamics/se/se_single_column_mod.F9053300deb7b68232bf2aa00451102db855f99e1bd1709670046000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.educompile catch/fix for se_single_column_mod 2024-03-05 13:20:46 -070053300deb7b68232bf2aa00451102db855f99e1bdcompile catch/fix for se_single_column_modeditsrc/dynamics/se/se_single_column_mod.F90advance_clubb_core_module.F9009d7b40ad3f996bb73b0f8689947f758705f53111709675532000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoves comment about Numerical Recipes 2024-03-05 15:52:12 -060009d7b40ad3f996bb73b0f8689947f758705f5311Removes comment about Numerical Recipeseditadvance_clubb_core_module.F90src/dynamics/se/dycore/prim_driver_mod.F90src/control/scamMod.F90src/dynamics/se/advect_tend.F9036e8f4b9731352336a6f74a0ab397020f10879981709679902000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edushorten a few long lines >132 2024-03-05 16:05:02 -070036e8f4b9731352336a6f74a0ab397020f1087998shorten a few long lines >132editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/control/scamMod.F90editsrc/dynamics/se/advect_tend.F90src/dynamics/se/se_single_column_mod.F908851ffde26d8c8d58ace4f806c72cbdf403d27641709688667000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.edubugfix for new minloc replacement for loop with exit 2024-03-05 18:31:07 -07008851ffde26d8c8d58ace4f806c72cbdf403d2764bugfix for new minloc replacement for loop with exiteditsrc/dynamics/se/se_single_column_mod.F90bld/namelist_files/namelist_defaults_cam.xml098b4c24dbea2ff0c93c0b9fac12c95b50f02aa21709762832000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edunamelist_default not setting WACCM-x variables correctly since waccm_phys="1" is true for WACCM-x 2024-03-06 15:07:12 -0700098b4c24dbea2ff0c93c0b9fac12c95b50f02aa2namelist_default not setting WACCM-x variables correctly sinceeditbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90643c32790dbe9a74f2dc47a95f20a6000fa476f01709767185000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduConvert CLUBB error locations from rad to degrees 2024-03-06 16:19:45 -0700643c32790dbe9a74f2dc47a95f20a6000fa476f0Convert CLUBB error locations from rad to degreeseditsrc/physics/cam/clubb_intr.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_camcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cam918ae1d89261128618529fafda82cd12e3f3eaa91709767234000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate hist list for subcolumns and add clubb_diags test output to mg3 test defs 2024-03-06 16:20:34 -0700918ae1d89261128618529fafda82cd12e3f3eaa9Update hist list for subcolumns and add clubb_diags test output to mg3 test defseditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camExternals.cfgsrc/dynamics/se/se_single_column_mod.F905f7a485ccea92eaf2f9791917e63d4bfd8833ecb1709853957000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate ice external tag 2024-03-07 16:25:57 -07005f7a485ccea92eaf2f9791917e63d4bfd8833ecbupdate ice external tageditExternals.cfgeditsrc/dynamics/se/se_single_column_mod.F90bld/namelist_files/namelist_definition.xmlbld/namelist_files/namelist_defaults_cam.xmle1f6bf07d02d4e0150051ca736d343f20e96a83c1709857070000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing review comments 2024-03-07 17:17:50 -0700e1f6bf07d02d4e0150051ca736d343f20e96a83cAddressing review commentseditbld/namelist_files/namelist_definition.xmleditbld/namelist_files/namelist_defaults_cam.xmlbld/configure5aa24d698204846944b5d01b3f803745253ae7441709933109000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix so that all three flavors of intel compiler are recognized on derecho 2024-03-08 14:25:09 -07005aa24d698204846944b5d01b3f803745253ae744fix so that all three flavors of intel compiler are recognized on derechoeditbld/configuresrc/physics/cam/zm_conv_intr.F9098f4f8d36df4e7ceb2732c094fd31eddc035ea541709939795000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduSplit wind variable into two variables 2024-03-08 16:16:35 -070098f4f8d36df4e7ceb2732c094fd31eddc035ea54Split wind variable into two variableseditsrc/physics/cam/zm_conv_intr.F90bld/configuree8933a9a8266cfdbd068964a49f6e34b5c47a6501709940967000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRename directory to zhang_mcfarlane 2024-03-08 16:36:07 -0700e8933a9a8266cfdbd068964a49f6e34b5c47a650Rename directory to zhang_mcfarlaneeditbld/configuresrc/physics/cam/zm_conv_intr.F9049674280030e6fbc6bc90464feee3e3438aa96741709944665000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduPut back in namelist logging 2024-03-08 17:37:45 -070049674280030e6fbc6bc90464feee3e3438aa9674Put back in namelist loggingeditsrc/physics/cam/zm_conv_intr.F90Externals.cfgbcd2ea54ec4b145151bae7b1ea4c475d781fa0721710301511000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comdont need these cdep mods 2024-03-12 21:45:11 -0600bcd2ea54ec4b145151bae7b1ea4c475d781fa072dont need these cdep modseditExternals.cfgsrc/physics/cam/zm_conv_intr.F9075e68155bd1d00d36f9753f2abf5b6854554299a1710344214000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove jctop, jcbot from zm_convr_run calling list 2024-03-13 09:36:54 -060075e68155bd1d00d36f9753f2abf5b6854554299aRemove jctop, jcbot from zm_convr_run calling listeditsrc/physics/cam/zm_conv_intr.F90src/physics/cam_dev/physpkg.F90src/physics/cam/physpkg.F90src/physics/cam/cam_snapshot.F90Externals_CAM.cfgsrc/physics/cam_dev/cam_snapshot.F90src/physics/cam/convect_deep.F90src/physics/cam/zm_conv_intr.F908ea3da242a747b2f86c6d5ec39c23a816bff88451710369013000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove unused pflx variable and set placeholder tag for atmospheric_physics external 2024-03-13 16:30:13 -06008ea3da242a747b2f86c6d5ec39c23a816bff8845Remove unused pflx variable and set placeholder tag for atmospheric_physics externaleditsrc/physics/cam/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editsrc/physics/cam_dev/cam_snapshot.F90editsrc/physics/cam/cam_snapshot.F90editsrc/physics/cam/convect_deep.F90editsrc/physics/cam/zm_conv_intr.F90editExternals_CAM.cfgsrc/control/camsrfexch.F90src/cpl/nuopc/atm_import_export.F90src/physics/cam/cam_diagnostics.F90d080cb8350a938a13af9c887cc7c849bda327ff61710431265000http://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlermdfowler@ucar.eduUpdate U10 to be resolved wind; add variable for U10+gusts 2024-03-14 09:47:45 -0600d080cb8350a938a13af9c887cc7c849bda327ff6Update U10 to be resolved wind; add variable for U10+gustseditsrc/cpl/nuopc/atm_import_export.F90editsrc/physics/cam/cam_diagnostics.F90editsrc/control/camsrfexch.F90git_fleximod/git_fleximod.pygit_fleximod/metoflexi.py0c26ad0ce55a4d080ef211662e9f0d544c4ceada1710441803000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate cleanup 2024-03-14 12:43:23 -06000c26ad0ce55a4d080ef211662e9f0d544c4ceadaupdate cleanupeditgit_fleximod/git_fleximod.pyeditgit_fleximod/metoflexi.pysrc/physics/cam/zm_conv_intr.F90ce54561bd835f5b2178d97bd87284fb585e8f3911710441942000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduMove a couple of outfld calls 2024-03-14 12:45:42 -0600ce54561bd835f5b2178d97bd87284fb585e8f391Move a couple of outfld callseditsrc/physics/cam/zm_conv_intr.F90README.md17dc6d3a0abbc7a6f69c79197f6892501b7e2e8d1710441958000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate cleanup 2024-03-14 12:45:58 -060017dc6d3a0abbc7a6f69c79197f6892501b7e2e8dupdate cleanupeditREADME.mdgit_fleximod/git_fleximod.pya56b7f7cec1372dec15962865123f9d14f8fd4bf1710448425000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall tests passing 2024-03-14 14:33:45 -0600a56b7f7cec1372dec15962865123f9d14f8fd4bfall tests passingeditgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.pyc31e17f4fbb17aaffd8afdd1475b19dcfb0744091710449281000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edumore cleanup and comments 2024-03-14 14:48:01 -0600c31e17f4fbb17aaffd8afdd1475b19dcfb074409more cleanup and commentseditgit_fleximod/git_fleximod.pysrc/dynamics/se/dycore/se_dyn_time_mod.F90323976618c01a949295585c2dc903d58e57a3ee81710646155000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix restart issue 2024-03-16 21:29:15 -0600323976618c01a949295585c2dc903d58e57a3ee8fix restart issueeditsrc/dynamics/se/dycore/se_dyn_time_mod.F90src/physics/waccm/efield.F90src/chemistry/mozart/sv_decomp.F904da7f9c9d5d0579542041292010c740309f394dd1710775632000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduUse lapack routine to solve matrix eq for E-field boundary calc deleted: src/chemistry/mozart/sv_decomp.F90 modified: src/physics/waccm/efield.F90 2024-03-18 09:27:12 -06004da7f9c9d5d0579542041292010c740309f394ddUse lapack routine to solve matrix eq for E-field boundary calceditsrc/physics/waccm/efield.F90deletesrc/chemistry/mozart/sv_decomp.F90src/dynamics/se/dycore/element_mod.F90src/dynamics/se/dycore/prim_init.F90673f1808880bb1f2fe2d7b6dadc6cca50261dfd71710778292000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edusave memory by dynamic allocation of elem% variables 2024-03-18 10:11:32 -0600673f1808880bb1f2fe2d7b6dadc6cca50261dfd7save memory by dynamic allocation of elem% variableseditsrc/dynamics/se/dycore/element_mod.F90editsrc/dynamics/se/dycore/prim_init.F90src/physics/cam/zm_conv_intr.F90f386bc4bb9718575b9db162c76bc8980a28a65121710791160000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduSeparate four additional wind variables 2024-03-18 13:46:00 -0600f386bc4bb9718575b9db162c76bc8980a28a6512Separate four additional wind variableseditsrc/physics/cam/zm_conv_intr.F90src/physics/waccm/efield.F901cd5e5a76e5f3b825c191cea02b531f7f8d4b2341710800974000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinit ipiv with integer 0 2024-03-18 16:29:34 -06001cd5e5a76e5f3b825c191cea02b531f7f8d4b234init ipiv with integer 0editsrc/physics/waccm/efield.F90advance_wp2_wp3_module.F90fill_holes.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90mono_flux_limiter.F90e46bd6ab09c336755a83f2ea26efbc6e066415641710806789000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comOpenMP Optimizations (#1146) * Small changes to improve omp performance. * Some more small changes to help openmp * Adhering to standards a little better by specifying _core_rknd 2024-03-18 19:06:29 -0500e46bd6ab09c336755a83f2ea26efbc6e06641564OpenMP Optimizations (#1146)editadvance_wp2_wp3_module.F90editadvance_xm_wpxp_module.F90editfill_holes.F90editadvance_clubb_core_module.F90editmono_flux_limiter.F90src/physics/waccm/efield.F90src/chemistry/utils/apex.F906ee3c9be5f5ba404d06793b8da57d0612f26f6011710851609000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educhanges for nag nan test modified: src/chemistry/utils/apex.F90 modified: src/physics/waccm/efield.F90 2024-03-19 06:33:29 -06006ee3c9be5f5ba404d06793b8da57d0612f26f601changes for nag nan testeditsrc/physics/waccm/efield.F90editsrc/chemistry/utils/apex.F90bld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml7f642b688c62295245df256282a97c1b056d337b1710862402000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edufix issue with sd_waccmx_ma_cam6 use case 2024-03-19 09:33:22 -06007f642b688c62295245df256282a97c1b056d337bfix issue with sd_waccmx_ma_cam6 use caseeditbld/namelist_files/use_cases/sd_waccmx_ma_cam6.xmlgit_fleximod/gitinterface.py82428601f52b15b27f67031ad093d91554d09d3e1710874801000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix py3.11 issue in gitinterface 2024-03-19 13:00:01 -060082428601f52b15b27f67031ad093d91554d09d3efix py3.11 issue in gitinterfaceeditgit_fleximod/gitinterface.pysrc/dynamics/se/dycore/prim_init.F9058252b91f1935e1e2d7ce8601ab3545c39db716c1710881242000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix allocation errors found during testing. 2024-03-19 14:47:22 -060058252b91f1935e1e2d7ce8601ab3545c39db716cFix allocation errors found during testing.editsrc/dynamics/se/dycore/prim_init.F90src/control/cam_history.F90b7893ef1de5e4e309a66c9accee718060677b86b1710887491000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix to allow multiple monthly avg history files 2024-03-19 18:31:31 -0400b7893ef1de5e4e309a66c9accee718060677b86bfix to allow multiple monthly avg history fileseditsrc/control/cam_history.F90doc/ChangeLogac729892b98557f4d0b4b5eb3ab67a4adcc24dde1710944490000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry 2024-03-20 10:21:30 -0400ac729892b98557f4d0b4b5eb3ab67a4adcc24ddestart ChangeLog entryeditdoc/ChangeLogdoc/ChangeLogf6cfc5acd3141f46230a0db2f231ded40daf48dd1711033691000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-03-21 11:08:11 -0400f6cfc5acd3141f46230a0db2f231ded40daf48ddupdate ChangeLogeditdoc/ChangeLogcime_config/buildnmlb20161cdda768b3d18f631ebb6333d00c45e2fc61711039591000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix typo 2024-03-21 10:46:31 -0600b20161cdda768b3d18f631ebb6333d00c45e2fc6Fix typoeditcime_config/buildnmlsrc/dynamics/se/dycore/global_norms_mod.F90c4dc644eb743391f84b82f957af61099694bd0b81711056263000http://carson.math.uwm.edu/jenkins/user/peter.hjort.lauritzenpeter.hjort.lauritzenpeter.hjort.lauritzen@gmail.comfix bug on sponge settings for WACCM 2024-03-21 15:24:23 -0600c4dc644eb743391f84b82f957af61099694bd0b8fix bug on sponge settings for WACCMeditsrc/dynamics/se/dycore/global_norms_mod.F90src/chemistry/mozart/mo_jshort.F9021aece00994cfeb2c5fd895d319a85e0eb04da9a1711118399000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educode cleanup for O2 abs cross sections modified: src/chemistry/mozart/mo_jshort.F90 2024-03-22 08:39:59 -060021aece00994cfeb2c5fd895d319a85e0eb04da9acode cleanup for O2 abs cross sectionseditsrc/chemistry/mozart/mo_jshort.F90fill_holes.F90b3370acbc97df9a7f10cd183dbc0bb0d68036c491711137584000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding comment to explain unusual code choice. 2024-03-22 14:59:44 -0500b3370acbc97df9a7f10cd183dbc0bb0d68036c49Adding comment to explain unusual code choice.editfill_holes.F90bld/namelist_files/namelist_defaults_cam.xmlb4102ae46d48386f55e08e82c42f4b9782513e0e1711141802000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduadd one more location for setting of dust_emis_fact with SE dycore 2024-03-22 15:10:02 -0600b4102ae46d48386f55e08e82c42f4b9782513e0eadd one more location for setting of dust_emis_fact with SE dycoreeditbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testlist_cam.xmldoc/ChangeLog919cce51adcebf61eba635c2aeaaa61a42ce590b1711142067000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduUpdate FADIAB test to use ne5pg3 grid, and finalize ChangeLog. 2024-03-22 15:14:27 -0600919cce51adcebf61eba635c2aeaaa61a42ce590bUpdate FADIAB test to use ne5pg3 grid, and finalize ChangeLog.editcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLogfill_holes.F902211b4ac393092503821aab54176124651ab4ba81711302893000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding sum part to comment 2024-03-24 12:54:53 -05002211b4ac393092503821aab54176124651ab4ba8Adding sum part to commenteditfill_holes.F90doc/ChangeLogd2fe0de2bcabec10f4a0331199762ea0149001851711473902000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_153 2024-03-26 11:25:02 -0600d2fe0de2bcabec10f4a0331199762ea014900185Update ChangeLog for cam6_3_153editdoc/ChangeLogsrc/physics/cam/clubb_intr.F90a988a1439fc1fa6b3efc4962983b085625f061661711490003000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduSmall bug fix 2024-03-26 15:53:23 -0600a988a1439fc1fa6b3efc4962983b085625f06166Small bug fixeditsrc/physics/cam/clubb_intr.F90Externals.cfg20bf3f1b0f9cead645c76bfa1c937bbeb25ac7271711650667000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS to get U10 changes and CDEPS needed to work with that version of CMEPS 2024-03-28 12:31:07 -060020bf3f1b0f9cead645c76bfa1c937bbeb25ac727Update CMEPS to get U10 changes and CDEPS needed to work with that version of CMEPSeditExternals.cfggit_fleximod/git_fleximod.py3fba38563fd5a9ceec5d0abcd210ae90676b63091711652997000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduexplain M flag 2024-03-28 13:09:57 -06003fba38563fd5a9ceec5d0abcd210ae90676b6309explain M flageditgit_fleximod/git_fleximod.pycime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cambld/namelist_files/namelist_definition.xmlad1c08ed02e508b6664b30f80efc2b42e47d8e2f1711653317000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduCLUBB diagnostics test update plus addressing Adams review 2024-03-28 13:15:17 -0600ad1c08ed02e508b6664b30f80efc2b42e47d8e2fCLUBB diagnostics test update plus addressing Adams revieweditbld/namelist_files/namelist_definition.xmleditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_camgit_fleximod/git_fleximod.pyb4e07beb2fef9e4c62514a9b7fe4b86e99e043b21711654646000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufixes issue with ssh access to github (should not be required) 2024-03-28 13:37:26 -0600b4e07beb2fef9e4c62514a9b7fe4b86e99e043b2fixes issue with ssh access to github (should not be required)editgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.py3a9201dce1a482de86d7a00e6958cd8ce310b4ef1711655946000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edubetter error handling for not a tag 2024-03-28 13:59:06 -06003a9201dce1a482de86d7a00e6958cd8ce310b4efbetter error handling for not a tageditgit_fleximod/git_fleximod.pypyproject.tomltbump.tomlgit_fleximod/cli.pyad6b84ee19be4983561fbfff5d9d9abe24fda74e1711656945000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.3 2024-03-28 14:15:45 -0600ad6b84ee19be4983561fbfff5d9d9abe24fda74eBump to 0.7.3editpyproject.tomledittbump.tomleditgit_fleximod/cli.pygit_fleximod/git_fleximod.pyfd0ce7ad12f73b7932b98c6531b127767a7a2a191711658425000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduset python 3.7 as min version requirement 2024-03-28 14:40:25 -0600fd0ce7ad12f73b7932b98c6531b127767a7a2a19set python 3.7 as min version requirementeditgit_fleximod/git_fleximod.pysrc/physics/cam/cospsimulator_intr.F90src/physics/cam/physpkg.F90src/control/cam_history_support.F9098d246199491d17ee80a2dd676a7a6a3376c4f541711734247000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumods to limit COSP top 2024-03-29 13:44:07 -040098d246199491d17ee80a2dd676a7a6a3376c4f54mods to limit COSP topeditsrc/physics/cam/cospsimulator_intr.F90editsrc/control/cam_history_support.F90editsrc/physics/cam/physpkg.F90git_fleximod/git_fleximod.pyca419c61c810d57f0f7b4ab0de165ad30e28360d1711745596000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edurename fxurl 2024-03-29 14:53:16 -0600ca419c61c810d57f0f7b4ab0de165ad30e28360drename fxurleditgit_fleximod/git_fleximod.pysrc/physics/cam/clubb_intr.F90708f652b11354b7899a60c011b41a1d9810ac7a81711754694000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRemove threadprivate calls for stats (not needed) 2024-03-29 17:24:54 -0600708f652b11354b7899a60c011b41a1d9810ac7a8Remove threadprivate calls for stats (not needed)editsrc/physics/cam/clubb_intr.F90cime_config/testdefs/testlist_cam.xml7ac0af54aa6964d06a1d03b2d33410265127ddcc1711754908000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate testlist to include a threaded FV test 2024-03-29 17:28:28 -06007ac0af54aa6964d06a1d03b2d33410265127ddccUpdate testlist to include a threaded FV testeditcime_config/testdefs/testlist_cam.xmlclip_explicit.F90clubb_api_module.F90advance_xm_wpxp_module.F90parameters_tunable.F90new_pdf_main.F90advance_helper_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90new_hybrid_pdf_main.F90sfc_varnce_module.F90215f23ff2481515749a198c29db74d1005114b751711925174000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPutting ngrdcol in clubb_params (#1147) * Initial changes to make clubb_params have an ngrdcol dimension. All BFB on CPU and GPU. * pdf_closure done * pdf_closure missed changes * calc_Lscale_directly changes and removed accidentally added files * advance_xp2_xpyp done * Missed file * Added space here because the addition of this line in the last commit is to prevent Ri_zm from being uninitialized when using l_diag_Lscale_from_tau=.false. * advance_wp2_wp3 done * advance_xm_wpxp done * Fixed bugs found by checking l_modify_limiters_for_cnvg_test=.true. * Fixed bug found by checking l_diffuse_rtm_and_thlm and l_stability_correct_Kh_N2_zm * Removing slightly redundant logic * Swapping back order of l_gamma_skw if statements. I'm not sure why I swapped them in the first place. 2024-03-31 17:46:14 -0500215f23ff2481515749a198c29db74d1005114b75Putting ngrdcol in clubb_params (#1147)editadvance_helper_module.F90editclip_explicit.F90editadvance_xp2_xpyp_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmixing_length.F90editpdf_closure_module.F90editnew_hybrid_pdf_main.F90editadg1_adg2_3d_luhar_pdf.F90editSkx_module.F90editparameters_tunable.F90editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90editnew_pdf_main.F90editsfc_varnce_module.F90advance_xm_wpxp_module.F90a39122dbb717c71138d553a1cf1f8cfaa7670d0b1712000028000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug with C6 parameters, see https://github.com/larson-group/clubb/pull/1147. This is technically BIT_CHANGING, but only when C6thl != C6thlb and l_diag_Lscale_from_tau=.false. 2024-04-01 14:33:48 -0500a39122dbb717c71138d553a1cf1f8cfaa7670d0bFixing bug with C6 parameters, see https://github.com/larson-group/clubb/pull/1147. This is technically BIT_CHANGING, but only when C6thl != C6thlb and l_diag_Lscale_from_tau=.false.editadvance_xm_wpxp_module.F90src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F904e1b7fa4964d5ec4bfeb17051eeb631aa068475a1712004274000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddress review comments 2024-04-01 14:44:34 -06004e1b7fa4964d5ec4bfeb17051eeb631aa068475aAddress review commentseditsrc/physics/cam/micro_pumas_cam.F90editsrc/physics/cam_dev/micro_pumas_cam.F90cime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_cam7a116b00c987e66b3981146a9d1a3aa57353ee2e1712010920000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRainbows testing added to aux_pumas tests, not aux_cam 2024-04-01 16:35:20 -06007a116b00c987e66b3981146a9d1a3aa57353ee2eRainbows testing added to aux_pumas tests, not aux_camaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_clmeditcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_pumas_rainbows/user_nl_camsrc/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F90bd5c54cf32b9d84bcf5e5d1e4ca722a64cdc35191712080787000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking compatible with latest clubb changes. Omitting these changes broke the bit diff tests, so RESOLVED:e0a868cc878ff72458edfa35cddcfa4c52ca23f9 RESOLVED:48f2a12737dc499dd1ff3703ca350bb5ae52bc6e 2024-04-02 12:59:47 -0500bd5c54cf32b9d84bcf5e5d1e4ca722a64cdc3519Making compatible with latest clubb changes. Omitting these changes broke the bit diff tests, so RESOLVED:e0a868cc878ff72458edfa35cddcfa4c52ca23f9 RESOLVED:48f2a12737dc499dd1ff3703ca350bb5ae52bc6eeditsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_intr.F90README_EXTERNALS0bd3e41c36afa274b56385e912577b197e9f4a8c1712084610000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space to make commit because the last commit fixed the code, and that means it was technically bit changing, so RESOVLED:bd5c54cf32b9d84bcf5e5d1e4ca722a64cdc3519 2024-04-02 14:03:30 -05000bd3e41c36afa274b56385e912577b197e9f4a8cAdding space to make commit because the last commit fixed the code, and that means it was technically bit changing, so RESOVLED:bd5c54cf32b9d84bcf5e5d1e4ca722a64cdc3519editREADME_EXTERNALSExternals.cfg33a77789de67b79ee0df781c9c65cebfc797f90f1712093511000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS and CDEPS to latest tags 2024-04-02 15:31:51 -060033a77789de67b79ee0df781c9c65cebfc797f90fUpdate CMEPS and CDEPS to latest tagseditExternals.cfggit_fleximod/git_fleximod.pytests/conftest.pygit_fleximod/utils.py152bad98fecc769308c782db5c80d95e51b33f611712156706000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix tests on izumi 2024-04-03 09:05:06 -0600152bad98fecc769308c782db5c80d95e51b33f61fix tests on izumiedittests/conftest.pyeditgit_fleximod/git_fleximod.pyeditgit_fleximod/utils.pygit_fleximod/metoflexi.py5a1e5f64b813208fb6c62dfdab6e466a5b4ef8d61712159457000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix issue in metoflexi 2024-04-03 09:50:57 -06005a1e5f64b813208fb6c62dfdab6e466a5b4ef8d6fix issue in metoflexieditgit_fleximod/metoflexi.pyExternals.cfgead83ced07ad8fc9696e9da78acba201062edd691712174306000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate CMEPS for bugfix for NAG 2024-04-03 13:58:26 -0600ead83ced07ad8fc9696e9da78acba201062edd69Update CMEPS for bugfix for NAGeditExternals.cfgsrc/physics/cam/cospsimulator_intr.F903b235e40241456c21ba56abff774e41ae68c1d421712188068000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumods to limit COSP top 2024-04-03 19:47:48 -04003b235e40241456c21ba56abff774e41ae68c1d42mods to limit COSP topeditsrc/physics/cam/cospsimulator_intr.F90doc/ChangeLoga078fe5570aa39792fdec7dc0b5f7a64ebaf04571712254559000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate ChangeLog for cam6_3_154 2024-04-04 12:15:59 -0600a078fe5570aa39792fdec7dc0b5f7a64ebaf0457Update ChangeLog for cam6_3_154editdoc/ChangeLogadvance_xp2_xpyp_module.F909e61ef088724b119d7c7f61a21b4c3d306058bcf1712297060000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAt the ghost point below the surface, which does not matter in the calculations, a value of 0 is now being entered for thermodynamic-level output stats coef_wprtp2_implicit, term_wprtp2_explicit, etc. Why would we do this? The answer is "Why Not??!!!!" This is being done to keep the trunk results bit-for-bit with the clubb_ghost_exorcism branch, which is no longer loops over the ghost level below the surface in the region of code where these stats are recorded. In terms of the master, this commit is technically BIT_CHANGING. However, only for these 6 output terms at the ghost point. 2024-04-05 01:04:20 -05009e61ef088724b119d7c7f61a21b4c3d306058bcfAt the ghost point below the surface, which does not matter ineditadvance_xp2_xpyp_module.F90advance_windm_edsclrm_module.F9068d7df96e0daefd601d9649c886f68401a780ba11712376324000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe code that advances um and vm when l_predict_upwp_vpwp is turned off (as found in advance_windm_edsclrm) was accessing the ghost point in one spot. I rewrote it in the exact way the code in the clubb_ghost_exorcism branch is written so that it makes the same calculation without referencing the ghost point. I also rewrote a couple stats by outputting a value of 0 at the ghost point to maintain stat consistency between the master and the ghost exorcism branch. This commit is BIT_CHANGING, but only when the l_predict_upwp_vpwp flag is set to false (which is not the case by default). 2024-04-05 23:05:24 -050068d7df96e0daefd601d9649c886f68401a780ba1The code that advances um and vm when l_predict_upwp_vpwp is turned offeditadvance_windm_edsclrm_module.F90advance_windm_edsclrm_module.F9079a203f9281c29c1f249395c0cd9beb28851684f1712412930000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIt was discovered that the location where the ghost point values of um and vm were set equal to their respective values at the first thermodynamic level above the surface was not ideal. Their assignment occurred before the love nudge (l_uv_nudge). Then, the love nudge came along and altered their values so that um(1) no longer equaled um(2) -- and analogous for vm(1) and vm(2) -- for a half dozen cases. In addition to making the code inconsistent, it also caused bit-for-bitness differences between the master and clubb_ghost_exorcism branches. For those reasons, this BIT_CHANGING commit is being made. 2024-04-06 09:15:30 -050079a203f9281c29c1f249395c0cd9beb28851684fIt was discovered that the location where the ghost point valueseditadvance_windm_edsclrm_module.F90advance_xm_wpxp_module.F9009e6e7258c51f674efc6aefc0285458f1e74a2ce1712762923000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhile it doesn't affect results, I fixed what appears to be an obvious bug in advance_xm_wpxp. If everything is at a singular zm level, the referenced height shouldn't be gr%zt, but rather gr%zm. 2024-04-10 10:28:43 -050009e6e7258c51f674efc6aefc0285458f1e74a2ceWhile it doesn't affect results, I fixed what appears to be aneditadvance_xm_wpxp_module.F90advance_xm_wpxp_module.F905694aa6f6ccaca0ba89e4c4a54119edfbc05ed4b1712768355000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the loop in subroutine diagnose_xpwp so that it doesn't loop over the model upper or lower boundaries. Calculations at those levels are irrelevant to the results, and their inclusion causes bitness differences between the master and clubb_ghost_exorcism branches. Since this code change causes differences in the zm stats file at the upper and lower boundaries for a few fields, this commit is technically BIT_CHANGING, although it should be noted that it does not change the simulation results. 2024-04-10 11:59:15 -05005694aa6f6ccaca0ba89e4c4a54119edfbc05ed4bI am updating the loop in subroutine diagnose_xpwp so that it doesn'teditadvance_xm_wpxp_module.F90src/physics/cam/cospsimulator_intr.F90src/utils/hycoef.F90src/physics/cam/ref_pres.F90f3000de68a87d6a1ba0ad9e6d0c1f0a3f35ee1661712784118000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd coordinate trop_pref 2024-04-10 17:21:58 -0400f3000de68a87d6a1ba0ad9e6d0c1f0a3f35ee166add coordinate trop_prefeditsrc/utils/hycoef.F90editsrc/physics/cam/ref_pres.F90editsrc/physics/cam/cospsimulator_intr.F90src/physics/cam/cospsimulator_intr.F90src/physics/cam/ref_pres.F906bc197bd4545635c9aba521d2b2d09b2feaea6891712793232000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educosp outputs use new vertical coords as appropriate 2024-04-10 19:53:52 -04006bc197bd4545635c9aba521d2b2d09b2feaea689cosp outputs use new vertical coords as appropriateeditsrc/physics/cam/ref_pres.F90editsrc/physics/cam/cospsimulator_intr.F90advance_xm_wpxp_module.F9004935f95e72f2d182d6717d69c9e950ad3d387131712811418000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit is being made to keep the stats zt output from the master branch inline with the output from the clubb_ghost_exorcism branch. In short, the only change is that the value of a couple of inputs relative to wpxp turbulent advection from thermodynamic level 1 are set to 0 for stats output in order to keep the master and ghost exorcism branches bit-for-bit with each other. The output at those levels are not used in any calculations and are unnecessary. However, this change is technically BIT_CHANGING. 2024-04-10 23:56:58 -050004935f95e72f2d182d6717d69c9e950ad3d38713This commit is being made to keep the stats zt output from theeditadvance_xm_wpxp_module.F90src/physics/cam_dev/physpkg.F908582549f580d957657cbc3dcb6e6a42ca5360b141712850086000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumerge cam/physpkg.F90 changes to cam_dev/physpkg.F90 2024-04-11 11:41:26 -04008582549f580d957657cbc3dcb6e6a42ca5360b14merge cam/physpkg.F90 changes to cam_dev/physpkg.F90editsrc/physics/cam_dev/physpkg.F90cime_config/testdefs/testlist_cam.xml1f0c3103f798f331df957df2039e40645203b4ef1712870893000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduNew threaded test hitting wallclock limit in aux_cam suite. Increased limit 2024-04-11 15:28:13 -06001f0c3103f798f331df957df2039e40645203b4efNew threaded test hitting wallclock limit in aux_cam suite. Increased limiteditcime_config/testdefs/testlist_cam.xmladvance_helper_module.F9076244e00c736bd5bbc29f55e9fc41095e01070541712890626000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a bug fix to the code that calculates mixed Brunt Vaisala frequency. The variable ice_supersat_frac was used directly in calculations that are supposed to take place on a momentum level. The fix is to interpolated ice_supersat_frac to momentum levels before use. This commit is BIT_CHANGING. 2024-04-11 21:57:06 -050076244e00c736bd5bbc29f55e9fc41095e0107054I am committing a bug fix to the code that calculates mixed Brunteditadvance_helper_module.F90src/physics/cam/cospsimulator_intr.F90dbf15642ea21dd2410784dcc54dcb766ccfd5de11712930705000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress compiler messages for cospsimulator_intr 2024-04-12 10:05:05 -0400dbf15642ea21dd2410784dcc54dcb766ccfd5de1address compiler messages for cospsimulator_intreditsrc/physics/cam/cospsimulator_intr.F90doc/ChangeLogd2662b4313d423504fd0b23f95ad1a97cf80f1ae1712955135000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog 2024-04-12 14:52:15 -0600d2662b4313d423504fd0b23f95ad1a97cf80f1aeUpdate ChangeLogeditdoc/ChangeLogmono_flux_limiter.F90a9608e5509c2494c9805c0f6a754f254c5f20c7e1713021941000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a stats change to the ghost point values of zt stats output variables found in the monotonic flux limiter. These values are all being set simply to 0 at the ghost point for purposes of providing an easy comparison to stats output files from the clubb_ghost_exorcism branch. The code change is not at all answer changing. However, it is technically BIT_CHANGING. 2024-04-13 10:25:41 -0500a9608e5509c2494c9805c0f6a754f254c5f20c7eI am committing a stats change to the ghost point values of zteditmono_flux_limiter.F90src/physics/cam/cospsimulator_intr.F909c605637049d096026de8fb91656e5da26f0b49a1713194808000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix interface height and pressure inputs 2024-04-15 11:26:48 -04009c605637049d096026de8fb91656e5da26f0b49afix interface height and pressure inputseditsrc/physics/cam/cospsimulator_intr.F90src/chemistry/mozart/mo_jshort.F90d1fa224ac89b788a4f657baf9756e6b2120dfaa31713210533000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduminor changes modified: src/chemistry/mozart/mo_jshort.F90 2024-04-15 13:48:53 -0600d1fa224ac89b788a4f657baf9756e6b2120dfaa3minor changeseditsrc/chemistry/mozart/mo_jshort.F90src/chemistry/mozart/mo_jshort.F90c4d9066e795650ead6d6b2b1288e5791799b50b11713214540000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edurename limit params 2024-04-15 14:55:40 -0600c4d9066e795650ead6d6b2b1288e5791799b50b1rename limit paramseditsrc/chemistry/mozart/mo_jshort.F90src/physics/cam/cospsimulator_intr.F90doc/ChangeLog66534c905bc670137da1a8a49c61f34e3972720f1713218530000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd ChangeLog 2024-04-15 18:02:10 -040066534c905bc670137da1a8a49c61f34e3972720fadd ChangeLogeditsrc/physics/cam/cospsimulator_intr.F90editdoc/ChangeLogsrc/physics/cam/zm_conv_intr.F90aa6fa83552bb88b29b6f8ef25362849017ea02951713220710000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAddress reviewer comments 2024-04-15 16:38:30 -0600aa6fa83552bb88b29b6f8ef25362849017ea0295Address reviewer commentseditsrc/physics/cam/zm_conv_intr.F90bld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml47dfc51e2a4a0b126e1b7edbdfa8a91b938f7f551713278863000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse case sd_waccmx_ma_cam6 change for waccm_mad_mam5 chem 2024-04-16 08:47:43 -060047dfc51e2a4a0b126e1b7edbdfa8a91b938f7f55use case sd_waccmx_ma_cam6 change for waccm_mad_mam5 chemeditbld/namelist_files/use_cases/sd_waccmx_ma_cam6.xmldoc/ChangeLog830922b6c1cd0025f5962682be91e7c2d8f1dff81713280839000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-04-16 09:20:39 -0600830922b6c1cd0025f5962682be91e7c2d8f1dff8ChangeLog drafteditdoc/ChangeLogcime_config/testdefs/testlist_cam.xmldoc/ChangeLogcime_config/buildlib5310c6ee3ca5acdff5d4b3bf453c5378a95fbfa21713285797000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comPR requested updates 2024-04-16 10:43:17 -06005310c6ee3ca5acdff5d4b3bf453c5378a95fbfa2PR requested updateseditcime_config/testdefs/testlist_cam.xmleditcime_config/buildlibeditdoc/ChangeLogdoc/ChangeLog99d5fe281f7e970c35d0f234d996d820d5bd71831713292828000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-04-16 12:40:28 -060099d5fe281f7e970c35d0f234d996d820d5bd7183ChangeLog updateeditdoc/ChangeLogdoc/ChangeLog0e2ee61409ab9389a6f1756aebb9931cc663115c1713294195000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-04-16 13:03:15 -06000e2ee61409ab9389a6f1756aebb9931cc663115cChangeLog updateeditdoc/ChangeLogcime_config/testdefs/testlist_cam.xmlfaa4c3bb62481c483701a2c215a7b1f39fe2485e1713299834000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comsmall correction in comment 2024-04-16 14:37:14 -0600faa4c3bb62481c483701a2c215a7b1f39fe2485esmall correction in commenteditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam_dev/physpkg.F90doc/ChangeLogsrc/physics/cam/physpkg.F90src/physics/cam/cospsimulator_intr.F90168c3026b62f7c05e0ed305b81718ff976e90fbc1713365869000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix for restart with COSP 2024-04-17 10:57:49 -0400168c3026b62f7c05e0ed305b81718ff976e90fbcfix for restart with COSPeditdoc/ChangeLogeditsrc/physics/cam/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editsrc/physics/cam/cospsimulator_intr.F90Externals_CAM.cfgf8d3a9369232e0546adcd18712a808fbfac971ee1713369846000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate external 2024-04-17 10:04:06 -0600f8d3a9369232e0546adcd18712a808fbfac971eeUpdate externaleditExternals_CAM.cfgtools/definesurf/map_i.f90tools/topo_tool/cube_to_target/cube_to_target.F90tools/definesurf/map2f.f90tools/topo_tool/bin_to_cube/Makefiletools/definesurf/Makefiletools/definesurf/ao.f90tools/topo_tool/cube_to_target/READMEtools/definesurf/terrain_filter.f90tools/topo_tool/bin_to_cube/shr_kind_mod.F90tools/definesurf/READMEtools/definesurf/chkdims.f90tools/definesurf/ao_i.f90tools/definesurf/handle_error.f90tools/topo_tool/bin_to_cube/READMEtools/topo_tool/gen_netCDF_from_USGS/Makefiletools/definesurf/varf2c.f90tools/definesurf/endrun.f90tools/topo_tool/gen_netCDF_from_USGS/READMEtools/definesurf/shr_kind_mod.f90tools/definesurf/binf2c.f90tools/topo_tool/cube_to_target/Makefiletools/definesurf/area_ave.f90tools/topo_tool/cube_to_target/shr_kind_mod.F90tools/topo_tool/gen_netCDF_from_USGS/shr_kind_mod.F90tools/definesurf/interplandm.f90tools/definesurf/max_ovr.f90tools/definesurf/cell_area.f90tools/definehires/Makefiletools/definehires/shr_kind_mod.F90tools/definesurf/inimland.f90doc/ChangeLogtools/definehires/READMEtools/definesurf/lininterp.f90tools/definesurf/sghphis.f90tools/topo_tool/cube_to_target/remap.F90tools/definesurf/wrap_nf.f90tools/definesurf/fmain.f90tools/definesurf/sm121.f90tools/topo_tool/cube_to_target/reconstruct.F90tools/topo_tool/gen_netCDF_from_USGS/create_netCDF_from_USGS.F90tools/definehires/gtopo30_to_10min.F90tools/topo_tool/bin_to_cube/bin_to_cube.F90e41b16771b8a64d63324b10a0cd621361b63d3ac1713370137000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove old topo file generation tools 2024-04-17 12:08:57 -0400e41b16771b8a64d63324b10a0cd621361b63d3acremove old topo file generation toolsdeletetools/topo_tool/cube_to_target/remap.F90deletetools/definesurf/map2f.f90deletetools/topo_tool/cube_to_target/shr_kind_mod.F90deletetools/topo_tool/cube_to_target/READMEdeletetools/definesurf/sghphis.f90deletetools/definesurf/endrun.f90deletetools/topo_tool/bin_to_cube/Makefiledeletetools/topo_tool/bin_to_cube/READMEdeletetools/topo_tool/gen_netCDF_from_USGS/shr_kind_mod.F90deletetools/definesurf/handle_error.f90deletetools/definesurf/terrain_filter.f90deletetools/definesurf/chkdims.f90deletetools/topo_tool/bin_to_cube/bin_to_cube.F90deletetools/topo_tool/gen_netCDF_from_USGS/READMEdeletetools/topo_tool/gen_netCDF_from_USGS/create_netCDF_from_USGS.F90deletetools/definehires/Makefiledeletetools/definehires/gtopo30_to_10min.F90deletetools/definesurf/max_ovr.f90deletetools/definehires/READMEdeletetools/definehires/shr_kind_mod.F90deletetools/definesurf/shr_kind_mod.f90deletetools/topo_tool/gen_netCDF_from_USGS/Makefiledeletetools/definesurf/Makefileeditdoc/ChangeLogdeletetools/definesurf/ao_i.f90deletetools/topo_tool/cube_to_target/Makefiledeletetools/definesurf/fmain.f90deletetools/definesurf/wrap_nf.f90deletetools/definesurf/cell_area.f90deletetools/topo_tool/cube_to_target/reconstruct.F90deletetools/definesurf/varf2c.f90deletetools/definesurf/ao.f90deletetools/definesurf/interplandm.f90deletetools/topo_tool/cube_to_target/cube_to_target.F90deletetools/definesurf/map_i.f90deletetools/topo_tool/bin_to_cube/shr_kind_mod.F90deletetools/definesurf/binf2c.f90deletetools/definesurf/READMEdeletetools/definesurf/area_ave.f90deletetools/definesurf/inimland.f90deletetools/definesurf/sm121.f90deletetools/definesurf/lininterp.f90doc/ChangeLog5e4cf3374d59d3544e8523300dcf444018847b281713377777000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.com[ 50 character, one line summary ] Update ChangeLog [ Description of the changes in this commit. It should be enough information for someone not following this development to understand. Lines should be wrapped at about 72 characters. ] Test suite: Test baseline: Test namelist changes: Test status: [bit for bit, roundoff, climate changing] Fixes: [CIME Github issue #] User interface changes?: [Yes (describe what changes), No] Code review: 2024-04-17 12:16:17 -06005e4cf3374d59d3544e8523300dcf444018847b28[ 50 character, one line summary ]editdoc/ChangeLogExternals_CAM.cfg7e84a8b361523b7da65f4bf3ea51b439941f09f81713380962000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate to new PUMAS tag (fix gpu bugs) 2024-04-17 13:09:22 -06007e84a8b361523b7da65f4bf3ea51b439941f09f8Update to new PUMAS tag (fix gpu bugs)editExternals_CAM.cfgExternals.cfg49dae8b3076bd6af38f95290adef809257cf7f4c1713392865000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate cime external 2024-04-17 16:27:45 -060049dae8b3076bd6af38f95290adef809257cf7f4cUpdate cime externaleditExternals.cfgExternals.cfgaced0701562f125976563102a4cbece03606d7211713394529000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduNew ccs_config tag needed for GPU fixes 2024-04-17 16:55:29 -0600aced0701562f125976563102a4cbece03606d721New ccs_config tag needed for GPU fixeseditExternals.cfgmixing_length.F90advance_xp2_xpyp_module.F90advance_xp3_module.F90advance_clubb_core_module.F90setup_clubb_pdf_params.F90calc_pressure.F90advance_helper_module.F901a044ef468ede907dbb651c69bef76e264906b4b1713448035000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting some thresholding around positive-definite fields after a zt2zm statement. This commit does not change the results in our CLUBB standalone cases. 2024-04-18 08:47:15 -05001a044ef468ede907dbb651c69bef76e264906b4bCommitting some thresholding around positive-definite fields aftereditadvance_xp3_module.F90editadvance_helper_module.F90editadvance_clubb_core_module.F90editmixing_length.F90editsetup_clubb_pdf_params.F90editcalc_pressure.F90editadvance_xp2_xpyp_module.F90doc/ChangeLogf18cf2318c3c681d07b538d8f2a67da6930e35c11713451591000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-04-18 10:46:31 -0400f18cf2318c3c681d07b538d8f2a67da6930e35c1update ChangeLogeditdoc/ChangeLogExternals.cfgf5a3488da303ef51f96c30e9e5e6fbe3b76163721713482317000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate to newer cime tag 2024-04-18 17:18:37 -0600f5a3488da303ef51f96c30e9e5e6fbe3b7616372Update to newer cime tageditExternals.cfgsrc/control/cam_history.F90bld/build-namelistcime_config/usermods_dirs/scam_mandatory/shell_commandscime_config/testdefs/testlist_cam.xmlsrc/dynamics/se/se_single_column_mod.F90cime_config/config_component.xmlsrc/dynamics/se/advect_tend.F90src/control/history_scam.F90bld/config_files/definition.xmlcime_config/config_compsets.xmlsrc/control/getinterpnetcdfdata.F90src/dynamics/se/dycore/prim_driver_mod.F90bld/namelist_files/namelist_defaults_cam.xmlcime_config/SystemTests/sct.pybld/namelist_files/namelist_definition.xmlsrc/control/scamMod.F90src/dynamics/se/apply_iop_forcing.F902e344b3d2e4178e3ebe0db3d7cbb447341faaffd1713549739000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR updates for Jesse 2024-04-19 12:02:19 -06002e344b3d2e4178e3ebe0db3d7cbb447341faaffdPR updates for Jesseeditsrc/dynamics/se/advect_tend.F90editbld/build-namelisteditbld/config_files/definition.xmleditsrc/dynamics/se/apply_iop_forcing.F90editbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_definition.xmleditcime_config/testdefs/testlist_cam.xmleditcime_config/SystemTests/sct.pyeditsrc/control/cam_history.F90editcime_config/config_compsets.xmleditcime_config/usermods_dirs/scam_mandatory/shell_commandseditsrc/control/getinterpnetcdfdata.F90editsrc/dynamics/se/dycore/prim_driver_mod.F90editsrc/dynamics/se/se_single_column_mod.F90editcime_config/config_component.xmleditsrc/control/history_scam.F90editsrc/control/scamMod.F90bld/namelist_files/namelist_defaults_cam.xml0407135764f59de4c35b5e6535d808c71d9e76411713558225000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR updates 2024-04-19 14:23:45 -06000407135764f59de4c35b5e6535d808c71d9e7641PR updateseditbld/namelist_files/namelist_defaults_cam.xmlgrid_class.F9015e15c30d8454b66017207782a4e949282420a2c1713562695000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the linear interpolation in the zt2zm function at momentum level 1 from an interpolation between the ghost point and the first level above the surface to simply a "drop down" of the value found at the first level above the surface. This is being done ahead of the removal of the ghost point from the model. Results of this change are BIT_CHANGING. 2024-04-19 16:38:15 -050015e15c30d8454b66017207782a4e949282420a2cChanging the linear interpolation in the zt2zm function at momentumeditgrid_class.F90.gitignore86da0930e18c099267deca3e9b8d618215ec048b1713566159000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix gitignore for FV3 2024-04-19 16:35:59 -060086da0930e18c099267deca3e9b8d618215ec048bFix gitignore for FV3edit.gitignoresrc/control/scamMod.F90551612d501ce7080ee7b53fae4cd11c008479a951713568017000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR updates 2024-04-19 17:06:57 -0600551612d501ce7080ee7b53fae4cd11c008479a95PR updateseditsrc/control/scamMod.F90src/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F9069a95aa349b977c2ab765e8c77cdeef4a4b38c8d1713809381000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddress Cheryls review comments 2024-04-22 12:09:41 -060069a95aa349b977c2ab765e8c77cdeef4a4b38c8dAddress Cheryls review commentseditsrc/physics/cam_dev/micro_pumas_cam.F90editsrc/physics/cam/micro_pumas_cam.F90doc/ChangeLog963876d7f942598e943a6f971d9a181957972d641713809902000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd ChangeLog for cam6_3_158 2024-04-22 12:18:22 -0600963876d7f942598e943a6f971d9a181957972d64Add ChangeLog for cam6_3_158editdoc/ChangeLogsrc/ionosphere/waccmx/ionosphere_interface.F90src/physics/waccmx/ion_electron_temp.F907f0a45e67f0adc03dc8587e1bef3d0122074e0e21713820704000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinitial changes modified: src/ionosphere/waccmx/ionosphere_interface.F90 modified: src/physics/waccmx/ion_electron_temp.F90 2024-04-22 15:18:24 -06007f0a45e67f0adc03dc8587e1bef3d0122074e0e2initial changeseditsrc/ionosphere/waccmx/ionosphere_interface.F90editsrc/physics/waccmx/ion_electron_temp.F90git_fleximod/git_fleximod.py5398ef43fc6cdacdc894b7e6567bc9fb28b26da61713907104000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduif submodule does not exist add it 2024-04-23 15:18:24 -06005398ef43fc6cdacdc894b7e6567bc9fb28b26da6if submodule does not exist add iteditgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.py46a74ac7f75b5d086fb1f3b3ffb117ae76cc46d41713912254000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.educreate parent if it doesnt exist 2024-04-23 16:44:14 -060046a74ac7f75b5d086fb1f3b3ffb117ae76cc46d4create parent if it doesnt existeditgit_fleximod/git_fleximod.pypyproject.tomltbump.tomlgit_fleximod/cli.pyeb932b015072ba3ec8cc7fadf5a387058f79fc4c1713912587000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.4 2024-04-23 16:49:47 -0600eb932b015072ba3ec8cc7fadf5a387058f79fc4cBump to 0.7.4edittbump.tomleditpyproject.tomleditgit_fleximod/cli.pygrid_class.F90f3b2d7a6a63ceea30a960b27be61c18ea0279b711713916476000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI'm changing the way ddzt handles the derivative over momentum level 1. Previously, it was based on the differential between the ghost point and the first level above the surface. Now, the value of the derivative at momentum level 2 is simply being dropped down to momentum level 1. This is being done in advance of ghost point removal. The results of this commit are BIT_CHANGING. 2024-04-23 18:54:36 -0500f3b2d7a6a63ceea30a960b27be61c18ea0279b71I'm changing the way ddzt handles the derivative over momentum level 1.editgrid_class.F90src/chemistry/mozart/mo_gas_phase_chemdr.F90cime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/user_nl_cambld/build-namelistcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/config_component.xmlbld/configurebld/config_files/definition.xmlcime_config/SystemTests/mgp.pycime_config/config_compsets.xmlsrc/physics/cam/phys_control.F90src/physics/cam/nucleate_ice_cam.F90cime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/user_nl_camcime_config/config_pes.xmlcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/shell_commandsbld/namelist_files/namelist_defaults_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/user_nl_clmsrc/physics/cam/vertical_diffusion.F9019dc01171b3d426a3465b59bccba530f2af20ae81713993517000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educhange cam_dev to cam7 2024-04-24 17:18:37 -040019dc01171b3d426a3465b59bccba530f2af20ae8change cam_dev to cam7deletecime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/shell_commandseditsrc/physics/cam/vertical_diffusion.F90deletecime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/user_nl_cameditbld/config_files/definition.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/user_nl_cameditcime_config/SystemTests/mgp.pyeditcime_config/config_pes.xmleditbld/build-namelisteditbld/configureeditcime_config/config_component.xmleditsrc/physics/cam/phys_control.F90editcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam7/user_nl_clmeditsrc/physics/cam/nucleate_ice_cam.F90editbld/namelist_files/namelist_defaults_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq1d_14dec_ghg_cam_dev/user_nl_clmeditcime_config/config_compsets.xmleditsrc/chemistry/mozart/mo_gas_phase_chemdr.F90Externals.cfgsrc/physics/cam/micro_pumas_cam.F90src/physics/cam_dev/micro_pumas_cam.F905acb455de407a789a94339c87b4dceb3f69fe0a71714081803000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduChanges to work with subcolumns and scm 2024-04-25 15:50:03 -06005acb455de407a789a94339c87b4dceb3f69fe0a7Changes to work with subcolumns and scmeditsrc/physics/cam/micro_pumas_cam.F90editExternals.cfgeditsrc/physics/cam_dev/micro_pumas_cam.F90cime_config/testdefs/testlist_cam.xml925ba840c69471680f4e9d5ea223dfe7a27291461714150460000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate prealpha suite to include problematic test 2024-04-26 10:54:20 -0600925ba840c69471680f4e9d5ea223dfe7a2729146Update prealpha suite to include problematic testeditcime_config/testdefs/testlist_cam.xmldoc/ChangeLogaa0f8a85e2f2f4d9becf5448bdd42f58de4f2eb11714161888000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog 2024-04-26 14:04:48 -0600aa0f8a85e2f2f4d9becf5448bdd42f58de4f2eb1Update ChangeLogeditdoc/ChangeLogcime_config/SystemTests/sct.py8d9c4551008108fe3919b9805f6ab15bd9c3f8c51714228381000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduworkaround so that sct works on derecho 2024-04-27 08:33:01 -06008d9c4551008108fe3919b9805f6ab15bd9c3f8c5workaround so that sct works on derechoeditcime_config/SystemTests/sct.pydoc/ChangeLogaeb22d467ad649c2d55eeee824fc3d9e44c0543e1714420109000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduBring in fix for SCT (but breaks derecho test until ccs_config_cesm0.0.99 is brought in 2024-04-29 13:48:29 -0600aeb22d467ad649c2d55eeee824fc3d9e44c0543eBring in fix for SCT (but breaks derecho test until ccs_config_cesm0.0.99 is brought ineditdoc/ChangeLogbld/configuresrc/physics/cam_dev/physpkg.F90src/physics/cam/dadadj_cam.F90src/control/cam_snapshot_common.F90src/physics/cam/physpkg.F90src/physics/cam/dadadj.F905d10dfd8373fc59b23594f140c30bcbf62c60ec31714458260000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comdadadj ccpp updates 2024-04-30 00:24:20 -06005d10dfd8373fc59b23594f140c30bcbf62c60ec3dadadj ccpp updateseditsrc/control/cam_snapshot_common.F90editsrc/physics/cam/physpkg.F90editsrc/physics/cam_dev/physpkg.F90editbld/configuredeletesrc/physics/cam/dadadj.F90editsrc/physics/cam/dadadj_cam.F90advance_xm_wpxp_module.F9013811b3b0775ce0412d5ca84a1c0e8787e3823f61714471119000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMoved the ghost-point setting of xm(1) = xm(2) to the last line of the subroutine so this command doesn't get overwritten. This is technically BIT_CHANGING because it alters rtm (and some rtm-related calculations) at the ghost point, but it is not answer changing. This is being done in preparation for ghost point removal. 2024-04-30 04:58:39 -050013811b3b0775ce0412d5ca84a1c0e8787e3823f6Moved the ghost-point setting of xm(1) = xm(2) to the last lineeditadvance_xm_wpxp_module.F90Externals.cfg4015f0eed2eaacff222f64c96af3368a1eb85b6d1714487362000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduuse temporary cmep external for testing 2024-04-30 10:29:22 -04004015f0eed2eaacff222f64c96af3368a1eb85b6duse temporary cmep external for testingeditExternals.cfgsrc/physics/cam/gw_movmtn.F90src/physics/cam/clubb_intr.F90src/physics/cam/gw_drag.F909f0ca4d26f86e1b346ac0b109f61dc47eb7ecf141714503912000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduworking version - fallback 2024-04-30 13:05:12 -06009f0ca4d26f86e1b346ac0b109f61dc47eb7ecf14working version - fallbackeditsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/gw_drag.F90editsrc/physics/cam/clubb_intr.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90advance_xp3_module.F90advance_xm_wpxp_module.F90grid_class.F90setup_clubb_pdf_params.F90calc_pressure.F90advance_windm_edsclrm_module.F90advance_helper_module.F906db5d3c85dd296d8ccafe66f5e7e20b241d371881714534975000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comOptional arguments are just best sometimes (#1150) * Adding optional argument to zm2zt/zt2zm to act as threshold. This cuts down on lots of bulk and reduces the chances of breaking the GPU code. All BFB. * Removing TODO * Replacing hardcoded 0.0_core_rknd with zero_threshold 2024-04-30 22:42:55 -05006db5d3c85dd296d8ccafe66f5e7e20b241d37188Optional arguments are just best sometimes (#1150)editadvance_xm_wpxp_module.F90editsetup_clubb_pdf_params.F90editadvance_helper_module.F90editadvance_wp2_wp3_module.F90editcalc_pressure.F90editadvance_clubb_core_module.F90editadvance_xp3_module.F90editadvance_xp2_xpyp_module.F90editgrid_class.F90editadvance_windm_edsclrm_module.F90editmixing_length.F90advance_clubb_core_module.F90d6ca5b0e6179de58c7571bea8650e3cd93c3de5e1714537919000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug. RESOLVED:556370c6406e6b943b88affbe7728a5036b1ba22, this was catchable by using debugging flags, but seems to otherwise cause no issues. Investigating I found that it only clips the below ground level, so that must not have been affecting other levels. This is technically BIT_CHANGING since it resolves an issue. 2024-04-30 23:31:59 -0500d6ca5b0e6179de58c7571bea8650e3cd93c3de5eFixing bug. RESOLVED:556370c6406e6b943b88affbe7728a5036b1ba22, this was catchable by using debugging flags, but seems to otherwise cause no issues. Investigating I found that it only clips the below ground level, so that must not have been affecting other levels. This is technically BIT_CHANGING since it resolves an issue.editadvance_clubb_core_module.F90src/physics/cam_dev/physpkg.F90cime_config/testdefs/testlist_cam.xmlsrc/physics/cam7/stochastic_emulated_cam.F90src/physics/cam_dev/stochastic_tau_cam.F90bld/configuresrc/physics/cam7/convect_diagnostics.F90src/physics/cam_dev/cam_snapshot.F90src/physics/cam7/cam_snapshot.F90src/physics/cam_dev/stochastic_emulated_cam.F90src/physics/cam7/physpkg.F90src/physics/cam_dev/micro_pumas_cam.F90src/physics/cam7/micro_pumas_cam.F90src/physics/cam7/stochastic_tau_cam.F90src/physics/cam_dev/convect_diagnostics.F9035929f7b9f2f85ee154d2516a000b83e0417c8181714582980000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumake cam7 physics directory; allow 32 level cam7; up wallclock limits 2024-05-01 13:03:00 -040035929f7b9f2f85ee154d2516a000b83e0417c818make cam7 physics directory; allow 32 level cam7; up wallclock limitsaddsrc/physics/cam7/stochastic_tau_cam.F90editbld/configuredeletesrc/physics/cam_dev/stochastic_tau_cam.F90addsrc/physics/cam7/stochastic_emulated_cam.F90deletesrc/physics/cam_dev/cam_snapshot.F90addsrc/physics/cam7/convect_diagnostics.F90deletesrc/physics/cam_dev/physpkg.F90addsrc/physics/cam7/physpkg.F90deletesrc/physics/cam_dev/micro_pumas_cam.F90addsrc/physics/cam7/cam_snapshot.F90addsrc/physics/cam7/micro_pumas_cam.F90deletesrc/physics/cam_dev/stochastic_emulated_cam.F90editcime_config/testdefs/testlist_cam.xmldeletesrc/physics/cam_dev/convect_diagnostics.F90fill_holes.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90c2849fa3c750562ffdd5abd6bc9937c081e662261714587276000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking num_draw_points in fill_holes a constant. We were already using this value as a constant everywhere, but passing a constant by argument list makes it difficult/impossible for a compiler to optimize using that constant, unless it does inlining. Now, rather than passing the constant num_hf_draw_points (or sometimes a hardcoded 2) we just use num_hf_draw_points directly from constants_clubb. This massively improves the performance of a loop in fill holes when using nvhpc+omp, which was the motivation for this, but should also improve the performance on CPUs. Everything is BFB. 2024-05-01 13:14:36 -0500c2849fa3c750562ffdd5abd6bc9937c081e66226Making num_draw_points in fill_holes a constant. We were already using this value as a constant everywhere, but passing a constant by argument list makes it difficult/impossible for a compiler to optimize using that constant, unless it does inlining. Now, rather than passing the constant num_hf_draw_points (or sometimes a hardcoded 2) we just use num_hf_draw_points directly from constants_clubb. This massively improves the performance of a loop in fill holes when using nvhpc+omp, which was the motivation for this, but should also improve the performance on CPUs. Everything is BFB.editclubb_api_module.F90editfill_holes.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editadvance_clubb_core_module.F90advance_xm_wpxp_module.F900e6f459a8ca2110f661d78019a1f717ff9b9407a1714680265000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing code that effectively ignores the values of certain zt stats at the ghost level by setting them to 0. This is done to allow for bit-for-bitness comparisons between the master branch and the clubb_ghost_exorcism branch. Technically, since zt stat file output at the irrelevant ghost level is changed for some variables, this commit is BIT_CHANGING. Effectively, this commit doesn't change squat in terms of model results. 2024-05-02 15:04:25 -05000e6f459a8ca2110f661d78019a1f717ff9b9407aI am committing code that effectively ignores the values of certaineditadvance_xm_wpxp_module.F90bld/configure40703e8b5c3180f5ff534d9adcea295aeea9a9b51714680932000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRevert to support UWM build structure 2024-05-02 14:15:32 -060040703e8b5c3180f5ff534d9adcea295aeea9a9b5Revert to support UWM build structureeditbld/configureadvance_xm_wpxp_module.F904b4adc89f8fe60d9e9f89fadcab3f1f6c94992501714685456000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am moving the advance_xm_wpxp setting of xm(1) = xm(2) from the end of xm_clipping_and_stats to the very end of advance_xm_wpxp, right before the return to advance_clubb_core. The reason I am doing this is the nudging was done after setting xm(1) = xm(2) and would alter the results. This is no longer the case, as setting xm(1) = xm(2) is now being done after nudging. This is being done in advance of removal of the ghost point from CLUBB. This helps ensure a bit-for-bit match between the ghost exorcism branch and the master branch. This commit technically alter fields such as um, vm, um_bt, vm_bt, wpup2, wpvp2, and shear at level 1 only. Thus, this commit is technically BIT_CHANGING. Effectively, once again, this commit doesn't change squat. 2024-05-02 16:30:56 -05004b4adc89f8fe60d9e9f89fadcab3f1f6c9499250I am moving the advance_xm_wpxp setting of xm(1) = xm(2) from theeditadvance_xm_wpxp_module.F90src/ionosphere/waccmx/ionosphere_interface.F90f515afb6787e7d529a0e28c6d6ff0214108564701714686750000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimplement geometric hght function; set interface and mid-layer heights modified: src/ionosphere/waccmx/ionosphere_interface.F90 2024-05-02 15:52:30 -0600f515afb6787e7d529a0e28c6d6ff021410856470implement geometric hght function; set interface and mid-layer heightseditsrc/ionosphere/waccmx/ionosphere_interface.F90src/ionosphere/waccmx/ionosphere_interface.F901561081222a8a4dd8cf5f838798e47aba1069cb81714738006000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edusome cleanup 2024-05-03 06:06:46 -06001561081222a8a4dd8cf5f838798e47aba1069cb8some cleanupeditsrc/ionosphere/waccmx/ionosphere_interface.F90src/physics/cam/vertical_diffusion.F9042ba9d50b420a3f69db521c13175f2bf4c531b6b1714758211000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduHanli's fix for DTVKE 2024-05-03 11:43:31 -060042ba9d50b420a3f69db521c13175f2bf4c531b6bHanli's fix for DTVKEeditsrc/physics/cam/vertical_diffusion.F90advance_xm_wpxp_module.F90243d18ebd39084235f84c52d7ed538639bd23f951714763847000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding extra exclamation to acc statement to comment it out. 2024-05-03 14:17:27 -0500243d18ebd39084235f84c52d7ed538639bd23f95Adding extra exclamation to acc statement to comment it out.editadvance_xm_wpxp_module.F90Externals_CAM.cfg9eb07a19ddfabf2c5fee426aeb02917b7c38a8c51715010711000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduUpdate Externals_CAM to point to my new atmos_phys branch - will need to redirect this to the tagged version 2024-05-06 09:51:51 -06009eb07a19ddfabf2c5fee426aeb02917b7c38a8c5Update Externals_CAM to point to my new atmos_phys branch - will need to redirect this to the tagged versioneditExternals_CAM.cfgcime_config/testdefs/testlist_cam.xmlb0d9d601cb29250ec8349b17387a3f48752c5e691715012534000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduincrease wallclock limit 2024-05-06 12:22:14 -0400b0d9d601cb29250ec8349b17387a3f48752c5e69increase wallclock limiteditcime_config/testdefs/testlist_cam.xmldoc/ChangeLogd9c2caaf26482ba04f2a4f278b2a6ab2e9318d441715085836000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog 2024-05-07 08:43:56 -0400d9c2caaf26482ba04f2a4f278b2a6ab2e9318d44start ChangeLogeditdoc/ChangeLogsrc/physics/cam/cospsimulator_intr.F9037961cf91b76e4797284baea827e4e806907a21f1715123035000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd allocate stat checks; add some comments 2024-05-07 19:03:55 -040037961cf91b76e4797284baea827e4e806907a21fadd allocate stat checks; add some commentseditsrc/physics/cam/cospsimulator_intr.F90doc/ChangeLog5550915f3f07e711a8d7bcc49ed21a82511bfeca1715192807000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-05-08 14:26:47 -04005550915f3f07e711a8d7bcc49ed21a82511bfecaupdate ChangeLogeditdoc/ChangeLogmixing_length.F900ce993b309b89a592fddf5c7df4d8384d35147231715624439000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.edugr%zm should be used here instead of gr%zt, since these are momentum-level variables being calculated. Results are BIT_CHANGING. 2024-05-13 13:20:39 -05000ce993b309b89a592fddf5c7df4d8384d3514723gr%zm should be used here instead of gr%zt, since these areeditmixing_length.F90mixing_length.F90advance_clubb_core_module.F90880007854a85598da82ccefa4724c4ddbda5f7d61715635045000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThermodynamic-level (zt) values should be used with zt-variable calculations. This commit changes results (but not visibly) for the l_avg_Lscale code, but since this code is not the default in CLUBB, the code remains bit-for-bit since the last commit. 2024-05-13 16:17:25 -0500880007854a85598da82ccefa4724c4ddbda5f7d6Thermodynamic-level (zt) values should be used with zt-variableeditmixing_length.F90editadvance_clubb_core_module.F90Externals.cfgcime_config/testdefs/testlist_cam.xml32bf4b5d9eae057e24bdcedd45215f2a102c3acb1715705110000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate externals to match cesm2_3_alpha17f 2024-05-14 10:45:10 -060032bf4b5d9eae057e24bdcedd45215f2a102c3acbUpdate externals to match cesm2_3_alpha17feditExternals.cfgeditcime_config/testdefs/testlist_cam.xmlExternals.cfgcime_config/testdefs/testlist_cam.xmlc2a1d37eb9d7a79d8dffb54bb1a4fa3b471ef8411715707368000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduput back in MCT since makefile mods would be required 2024-05-14 11:22:48 -0600c2a1d37eb9d7a79d8dffb54bb1a4fa3b471ef841put back in MCT since makefile mods would be requirededitExternals.cfgeditcime_config/testdefs/testlist_cam.xmlREADME.md94121295e57a1d6e713b8e3ba84261d9e9cfebe61715716081000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate documentation 2024-05-14 13:48:01 -060094121295e57a1d6e713b8e3ba84261d9e9cfebe6update documentationeditREADME.mdcime_config/testdefs/testlist_cam.xml0c922db8c47af355779d96b5a3c1b3702d7a63531715723374000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduIncrease wall clock times 2024-05-14 15:49:34 -06000c922db8c47af355779d96b5a3c1b3702d7a6353Increase wall clock timeseditcime_config/testdefs/testlist_cam.xmlclubb_api_module.F90advance_xm_wpxp_module.F90805374a14b770257f081e083488dadbf954670441715800905000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing small GPU bug in advance_xm, also fixing a bug with sclrpthvp that's only detectable when were running 1 column on GPUs. 2024-05-15 14:21:45 -0500805374a14b770257f081e083488dadbf95467044Fixing small GPU bug in advance_xm, also fixing a bug with sclrpthvp that's only detectable when were running 1 column on GPUs.editclubb_api_module.F90editadvance_xm_wpxp_module.F90src/dynamics/se/dyn_comp.F90src/dynamics/se/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/se/dycore/vertremap_mod.F90src/utils/hycoef.F90src/dynamics/se/gravity_waves_sources.F90src/dynamics/se/dycore/prim_advance_mod.F90src/dynamics/se/dycore/viscosity_mod.F906f988cdff1fe6c5890cc3432893e8fc5d49a1b4c1715813002000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR updates 2024-05-15 16:43:22 -06006f988cdff1fe6c5890cc3432893e8fc5d49a1b4cPR updateseditsrc/dynamics/se/stepon.F90editsrc/dynamics/se/dycore/viscosity_mod.F90editsrc/dynamics/se/dycore/vertremap_mod.F90editsrc/dynamics/se/gravity_waves_sources.F90editsrc/utils/hycoef.F90editsrc/dynamics/se/dyn_grid.F90editsrc/dynamics/se/dycore/prim_advance_mod.F90editsrc/dynamics/se/dyn_comp.F90cime_config/testdefs/testlist_cam.xml4d797696cf47d5cab0eb18dba692cc746e35d45f1715886502000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.edurevert times back for regression tests to original times 2024-05-16 13:08:22 -06004d797696cf47d5cab0eb18dba692cc746e35d45frevert times back for regression tests to original timeseditcime_config/testdefs/testlist_cam.xmladvance_clubb_core_module.F90c7232ab0ff8a01c790b8ae8d7126696eeed84cc61715889108000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing a bug. Does not change default results. 2024-05-16 14:51:48 -0500c7232ab0ff8a01c790b8ae8d7126696eeed84cc6Fixing a bug. Does not change default results.editadvance_clubb_core_module.F90doc/ChangeLog6d958488d99059327aed1e362112cffbc26378e61715898880000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_3_161 2024-05-16 16:34:40 -06006d958488d99059327aed1e362112cffbc26378e6ChangeLog for cam6_3_161editdoc/ChangeLogcime_config/testdefs/testlist_cam.xmlExternals.cfgbb48a6dd29de8db242424ea892450ccb50158df61716311082000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduUpdate externals to match cesm2_3_alpha17f 2024-05-21 11:04:42 -0600bb48a6dd29de8db242424ea892450ccb50158df6Update externals to match cesm2_3_alpha17feditcime_config/testdefs/testlist_cam.xmleditExternals.cfgcime_config/testdefs/testlist_cam.xmlExternals.cfg1f0df194d83cc5d83aa88a9016f3f2c96f9d57801716311082000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduput back in MCT since makefile mods would be required 2024-05-21 11:04:42 -06001f0df194d83cc5d83aa88a9016f3f2c96f9d5780put back in MCT since makefile mods would be requirededitcime_config/testdefs/testlist_cam.xmleditExternals.cfgcime_config/testdefs/testlist_cam.xml93aa30e7ed2d4c31ab94b5bf4f310ebe8f81e3431716311082000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduIncrease wall clock times 2024-05-21 11:04:42 -060093aa30e7ed2d4c31ab94b5bf4f310ebe8f81e343Increase wall clock timeseditcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testlist_cam.xmle91606adb14eb836d8218abb4f239076810d05d31716311082000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.edurevert times back for regression tests to original times 2024-05-21 11:04:42 -0600e91606adb14eb836d8218abb4f239076810d05d3revert times back for regression tests to original timeseditcime_config/testdefs/testlist_cam.xmldoc/ChangeLogf816d1e560281734e3106a74cfa860484f5fb6a41716311082000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduChangeLog for cam6_3_161 2024-05-21 11:04:42 -0600f816d1e560281734e3106a74cfa860484f5fb6a4ChangeLog for cam6_3_161editdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commands4fc504cd98d51f10e4c3a544172c1f3dea08f98f1716312579000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduremove the casper test suites 2024-05-21 11:29:39 -06004fc504cd98d51f10e4c3a544172c1f3dea08f98fremove the casper test suitesdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clmdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clmeditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/shell_commandsdeletecime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/user_nl_clmcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandscime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/shell_commandscime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/user_nl_came79c4a388ea7c51286a339e3c6baf9100e2638421716313249000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduadd GPU test suite on Derecho 2024-05-21 11:40:49 -0600e79c4a388ea7c51286a339e3c6baf9100e263842add GPU test suite on Derechoaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/user_nl_clmeditcime_config/testdefs/testlist_cam.xmladdcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/shell_commandsaddcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols760/user_nl_cameditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commandsbld/namelist_files/namelist_defaults_cam.xmlb74950f69d3ea44a55ffbbd0d700afff178a05e01716486912000http://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsteradamrhster@gmail.comreplaced L93 ncdata files w/ corrected versions 2024-05-23 11:55:12 -0600b74950f69d3ea44a55ffbbd0d700afff178a05e0replaced L93 ncdata files w/ corrected versionseditbld/namelist_files/namelist_defaults_cam.xmlExternals.cfg835f37e95811720a863034dcebc6cee1318d620f1716498422000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating PIO version to use a commit more recent than the tag to avoid a bug, see https://github.com/larson-group/cam/pull/171\#discussion_r1608836640 for more detail. 2024-05-23 16:07:02 -0500835f37e95811720a863034dcebc6cee1318d620fUpdating PIO version to use a commit more recent than the tag to avoid a bug, see https://github.com/larson-group/cam/pull/171\#discussion_r1608836640 for more detail.editExternals.cfgrun_scripts/set_up_cam_coarse_res.py372f5aa54886744010bcfe2d5d7729becab4dc971716502283000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding space to trigger jenkins bin diff tests. 2024-05-23 17:11:23 -0500372f5aa54886744010bcfe2d5d7729becab4dc97Adding space to trigger jenkins bin diff tests.editrun_scripts/set_up_cam_coarse_res.pybld/configurebld/namelist_files/namelist_definition.xmlbld/build-namelistdoc/ChangeLogcime_config/config_component.xmlc1f7f176897c3395e518c4d6de5dffe3e8129cc21716503505000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurespond to review comments 2024-05-23 18:31:45 -0400c1f7f176897c3395e518c4d6de5dffe3e8129cc2respond to review commentseditbld/configureeditbld/build-namelisteditcime_config/config_component.xmleditdoc/ChangeLogeditbld/namelist_files/namelist_definition.xmlcime_config/testdefs/testlist_cam.xmle779d59601195b6f8ac8d0eea5980f3b055c13eb1716579425000http://carson.math.uwm.edu/jenkins/user/sunjiansunjiansunjian@ucar.eduswithc ERP to ERS test as nvhpc seems to have a bug with openmp threading 2024-05-24 13:37:05 -0600e779d59601195b6f8ac8d0eea5980f3b055c13ebswithc ERP to ERS test as nvhpc seems to have a bug with openmpeditcime_config/testdefs/testlist_cam.xmlsrc/control/cam_history.F90135ebcdda7c2ec542fc0989746548bddabae2fac1716581908000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduimprove performance of rh file write 2024-05-24 14:18:28 -0600135ebcdda7c2ec542fc0989746548bddabae2facimprove performance of rh file writeeditsrc/control/cam_history.F90src/physics/cam/cospsimulator_intr.F90267a37f5dc1a7d6ac79175827fb831cb42a37cc31716909851000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix typo in comment 2024-05-28 11:24:11 -0400267a37f5dc1a7d6ac79175827fb831cb42a37cc3fix typo in commenteditsrc/physics/cam/cospsimulator_intr.F90doc/ChangeLogcime_config/buildcpp99e41eb86f8e31f31f1d009b6ebfee0ce80736501716933298000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix buildcpp to return configure error messages 2024-05-28 17:54:58 -040099e41eb86f8e31f31f1d009b6ebfee0ce8073650fix buildcpp to return configure error messageseditcime_config/buildcppeditdoc/ChangeLogdoc/ChangeLogsrc/physics/cam/check_energy.F902a458db4bc61a2a98f4191598effb7a0b370a4021716936112000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix SE specific treatment of subcolumns in check_energy 2024-05-28 18:41:52 -04002a458db4bc61a2a98f4191598effb7a0b370a402fix SE specific treatment of subcolumns in check_energyeditsrc/physics/cam/check_energy.F90editdoc/ChangeLogsrc/dynamics/fv3.gitignore.gitmodulessrc/physics/rrtmgp/datacomponents/cmepscomponents/clmcomponents/cismcimesrc/physics/rrtmgp/extsrc/physics/carma/basesrc/physics/pumascomponents/mosartcomponents/rtmccs_configsharesrc/physics/ali_armssrc/atmos_physlibraries/mctsrc/physics/cosp2/srccomponents/cdepssrc/dynamics/mpas/dycoresrc/physics/clubblibraries/paralleliosrc/physics/pumas-frozensrc/chemistry/geoschem/geoschem_srccomponents/cicesrc/hemcocomponents/mizuRoutelibraries/FMSchem_proc8593b17b3685cd33237f41b27bb30e7658c166551716990325000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd submodules 2024-05-29 07:45:25 -06008593b17b3685cd33237f41b27bb30e7658c16655add 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clm branch 2024-05-29 09:51:50 -0600b463da08ee3c5d40fe59150ec74db795e12a06e8using clm branchedit.gitmodulesaddbin/git-fleximodeditcomponents/clmLicensegit_fleximod/gitmodules.py.pre-commit-config.yamldoc/index.rstdoc/conf.pydoc/Makefiledoc/make.batgit_fleximod/__init__.pytbump.tomlgit_fleximod/cli.pypyproject.tomlgit_fleximod/gitinterface.pytests/test_c_required.pygit_fleximod/metoflexi.pygit_fleximod/utils.pypoetry.lockREADME.mdtests/test_d_complex.pygit_fleximod/git_fleximod.pytests/test_a_import.pyescomp_install.github/workflows/pytest.yamltests/test_b_update.py.github/workflows/pre-commitgit_fleximod/lstripreader.pytests/__init__.pytests/conftest.py585ff448d06721b777663294ec666bdcb22c51781716998144000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduSquashed '.lib/git-fleximod/' content from commit 94121295 git-subtree-dir: .lib/git-fleximod git-subtree-split: 94121295e57a1d6e713b8e3ba84261d9e9cfebe6 2024-05-29 09:55:44 -0600585ff448d06721b777663294ec666bdcb22c5178Squashed '.lib/git-fleximod/' content from commit 94121295addgit_fleximod/metoflexi.pyadd.github/workflows/pytest.yamladdtests/test_d_complex.pyadddoc/conf.pyaddgit_fleximod/git_fleximod.pyaddgit_fleximod/gitinterface.pyaddpyproject.tomladddoc/Makefileaddtests/test_a_import.pyaddpoetry.lockaddgit_fleximod/lstripreader.pyaddtests/__init__.pyaddtests/test_b_update.pyadd.pre-commit-config.yamladdgit_fleximod/utils.pyaddtests/test_c_required.pyadddoc/index.rstaddescomp_installadd.github/workflows/pre-commitaddgit_fleximod/__init__.pyaddgit_fleximod/gitmodules.pyadddoc/make.bataddtests/conftest.pyaddREADME.mdaddLicenseaddgit_fleximod/cli.pyaddtbump.tomlsrc/hemcosrc/dynamics/fv3components/mizuRoute.gitmodules9c46501e49265ec9b4049a502399b46c659ee1971717016976000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate hemco external 2024-05-29 15:09:36 -06009c46501e49265ec9b4049a502399b46c659ee197update hemco externaleditsrc/dynamics/fv3editcomponents/mizuRouteedit.gitmoduleseditsrc/hemcoadvance_clubb_core_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90advance_helper_module.F9027bcd976257a9e518b3fef5318e1bb964f3fea741717028099000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe variable rc_coef_zm needed to be passed in and saved from timestep-to-timestep rather than rc_coef. The results of this change are BIT_CHANGING. 2024-05-29 19:14:59 -050027bcd976257a9e518b3fef5318e1bb964f3fea74The variable rc_coef_zm needed to be passed in and saved fromeditadvance_clubb_core_module.F90editadvance_helper_module.F90editclubb_api_module.F90editadvance_xm_wpxp_module.F90bld/namelist_files/use_cases/aquaplanet_rce_cam6.xmldoc/ChangeLogbld/namelist_files/use_cases/aquaplanet_cam5.xmlbld/namelist_files/use_cases/aquaplanet_cam6.xmlfccd317529b7b67db1763f741a86b036ca9498d21717088246000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove solar_htng_spctrl_scl from cam5/6 aquaplanet use case files 2024-05-30 12:57:26 -0400fccd317529b7b67db1763f741a86b036ca9498d2remove solar_htng_spctrl_scl from cam5/6 aquaplanet use case fileseditbld/namelist_files/use_cases/aquaplanet_cam5.xmleditbld/namelist_files/use_cases/aquaplanet_cam6.xmleditbld/namelist_files/use_cases/aquaplanet_rce_cam6.xmleditdoc/ChangeLogbld/configuref088d526f274cfa3e27acad63011412ca232f5f51717110570000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.educhange dir name from dadadj to dry_adiabatic_adjust and make sure new name is in Filepath 2024-05-30 17:09:30 -0600f088d526f274cfa3e27acad63011412ca232f5f5change dir name from dadadj to dry_adiabatic_adjust and make sure new name is in Filepatheditbld/configuregit_fleximod/git_fleximod.pygit_fleximod/cli.py4aa073c3482ad30b6952834ccc5eb99778f88c091717170978000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate find_root_dir to work with git worktree 2024-05-31 09:56:18 -06004aa073c3482ad30b6952834ccc5eb99778f88c09update find_root_dir to work with git worktreeeditgit_fleximod/cli.pyeditgit_fleximod/git_fleximod.pyLicenseREADME.mdgit_fleximod/cli.py1fddaac99d83852380738c44ca33f615898123ca1717171771000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edureturn str not Path 2024-05-31 10:09:31 -06001fddaac99d83852380738c44ca33f615898123careturn str not PatheditREADME.mdeditgit_fleximod/cli.pyeditLicensepyproject.tomltbump.tomlgit_fleximod/cli.pya354b0528228ac89ce103b3b42b2a203fe495ba51717172051000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.5 2024-05-31 10:14:11 -0600a354b0528228ac89ce103b3b42b2a203fe495ba5Bump to 0.7.5editpyproject.tomledittbump.tomleditgit_fleximod/cli.pyLicensetbump.tomlgit_fleximod/cli.pypyproject.tomlgit_fleximod/git_fleximod.pyREADME.mde9b20b57db64c0854dd0dcbff5618f44bbe2d5891717172710000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduSquashed '.lib/git-fleximod/' changes from 94121295..a354b052 a354b052 Bump to 0.7.5 71273de6 Merge pull request #37 from ESMCI/fix/git_workflow 1fddaac9 return str not Path 4aa073c3 update find_root_dir to work with git worktree git-subtree-dir: .lib/git-fleximod git-subtree-split: a354b0528228ac89ce103b3b42b2a203fe495ba5 2024-05-31 10:25:10 -0600e9b20b57db64c0854dd0dcbff5618f44bbe2d589Squashed '.lib/git-fleximod/' changes from 94121295..a354b052editgit_fleximod/cli.pyedittbump.tomleditREADME.mdeditpyproject.tomleditLicenseeditgit_fleximod/git_fleximod.py.gitmodulessrc/dynamics/fv30da3e6394140b520ef973d1b8f786187c6a751b21717172960000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate fv3 interface 2024-05-31 10:29:20 -06000da3e6394140b520ef973d1b8f786187c6a751b2update fv3 interfaceeditsrc/dynamics/fv3edit.gitmodulessrc/hemcocomponents/mizuRoute6f1f86b428082e31da2bc6f6f50593a1c160052a1717173110000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate externals 2024-05-31 10:31:50 -06006f1f86b428082e31da2bc6f6f50593a1c160052aupdate externalseditsrc/hemcoeditcomponents/mizuRoutecomponents/clm87a14836dfbaf467c1595b34fadcad3de9a590d91717173230000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate ctsm external 2024-05-31 10:33:50 -060087a14836dfbaf467c1595b34fadcad3de9a590d9update ctsm externaleditcomponents/clmgit_fleximod/git_fleximod.pygit_fleximod/gitmodules.py00b7b38174360d20b9c2bdeeb8d09f1ac0656fca1717263709000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edusome fixes when modifying url 2024-06-01 11:41:49 -060000b7b38174360d20b9c2bdeeb8d09f1ac0656fcasome fixes when modifying urleditgit_fleximod/git_fleximod.pyeditgit_fleximod/gitmodules.pypyproject.tomltbump.tomlgit_fleximod/cli.pya34070be02d10071b544be3839f6c9ed796626651717263984000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.6 2024-06-01 11:46:24 -0600a34070be02d10071b544be3839f6c9ed79662665Bump to 0.7.6edittbump.tomleditgit_fleximod/cli.pyeditpyproject.toml.lib/git-fleximod/pyproject.toml.lib/git-fleximod/License.lib/git-fleximod/poetry.lock.lib/git-fleximod/git_fleximod/git_fleximod.py.lib/git-fleximod/git_fleximod/__init__.py.lib/git-fleximod/doc/index.rst.lib/git-fleximod/doc/conf.py.lib/git-fleximod/tests/test_d_complex.py.lib/git-fleximod/.github/workflows/pytest.yaml.lib/git-fleximod/README.md.lib/git-fleximod/doc/make.bat.lib/git-fleximod/tbump.toml.lib/git-fleximod/git_fleximod/lstripreader.py.lib/git-fleximod/git_fleximod/metoflexi.py.lib/git-fleximod/.github/workflows/pre-commit.lib/git-fleximod/git_fleximod/cli.py.lib/git-fleximod/git_fleximod/utils.py.lib/git-fleximod/escomp_install.lib/git-fleximod/.pre-commit-config.yaml.lib/git-fleximod/tests/test_c_required.py.lib/git-fleximod/tests/test_b_update.py.lib/git-fleximod/tests/test_a_import.py.lib/git-fleximod/git_fleximod/gitinterface.py.lib/git-fleximod/tests/__init__.py.lib/git-fleximod/tests/conftest.py.lib/git-fleximod/git_fleximod/gitmodules.py.lib/git-fleximod/doc/Makefile5ceadc9e923b337e206e03d73a35b040d908e75a1717264900000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove git-fleximod 2024-06-01 12:01:40 -06005ceadc9e923b337e206e03d73a35b040d908e75aremove git-fleximoddelete.lib/git-fleximod/escomp_installdelete.lib/git-fleximod/git_fleximod/metoflexi.pydelete.lib/git-fleximod/tests/test_d_complex.pydelete.lib/git-fleximod/Licensedelete.lib/git-fleximod/git_fleximod/__init__.pydelete.lib/git-fleximod/git_fleximod/cli.pydelete.lib/git-fleximod/README.mddelete.lib/git-fleximod/.pre-commit-config.yamldelete.lib/git-fleximod/.github/workflows/pre-commitdelete.lib/git-fleximod/doc/conf.pydelete.lib/git-fleximod/pyproject.tomldelete.lib/git-fleximod/tests/__init__.pydelete.lib/git-fleximod/poetry.lockdelete.lib/git-fleximod/tests/conftest.pydelete.lib/git-fleximod/tests/test_b_update.pydelete.lib/git-fleximod/doc/Makefiledelete.lib/git-fleximod/doc/index.rstdelete.lib/git-fleximod/git_fleximod/gitmodules.pydelete.lib/git-fleximod/.github/workflows/pytest.yamldelete.lib/git-fleximod/git_fleximod/utils.pydelete.lib/git-fleximod/git_fleximod/gitinterface.pydelete.lib/git-fleximod/tbump.tomldelete.lib/git-fleximod/git_fleximod/git_fleximod.pydelete.lib/git-fleximod/git_fleximod/lstripreader.pydelete.lib/git-fleximod/tests/test_a_import.pydelete.lib/git-fleximod/doc/make.batdelete.lib/git-fleximod/tests/test_c_required.py.gitmodulessrc/hemcocomponents/clm253ba00e6d2747d5dc9bd0ba043b8df58c55ec001717275573000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate externals 2024-06-01 14:59:33 -0600253ba00e6d2747d5dc9bd0ba043b8df58c55ec00update externalsedit.gitmoduleseditsrc/hemcoeditcomponents/clm.gitmodules2c96bae4d59c6b7048448a266942a154a37dcaa31717421777000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate hemco tag 2024-06-03 07:36:17 -06002c96bae4d59c6b7048448a266942a154a37dcaa3update hemco tagedit.gitmodulesREADME.md4ae9171f03b1da9cb0be7c90707b2be92cf1363d1717443631000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate README.md with directions about git-fleximod 2024-06-03 13:40:31 -06004ae9171f03b1da9cb0be7c90707b2be92cf1363dUpdate README.md with directions about git-fleximodeditREADME.mdmanage_externals/checkout_externalsREADME.md9473a8137c37bd6a5ea487bc139c8a25d808abc01717445184000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd details to README.md and add script for manage_externals/checkout_externals 2024-06-03 14:06:24 -06009473a8137c37bd6a5ea487bc139c8a25d808abc0Add details to README.md and add script for manage_externals/checkout_externalsaddmanage_externals/checkout_externalseditREADME.mdtest/system/TGIT.sh87708b631dac23ff9f586fd7e6bc4f7c3bf6f66a1717449146000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate TGIT test to check for .gitmodules 2024-06-03 15:12:26 -060087708b631dac23ff9f586fd7e6bc4f7c3bf6f66aUpdate TGIT test to check for .gitmodulesedittest/system/TGIT.shmt95.f90mt95.F903d2c815522ee350d0dcb01d72877541e8317a5931717450146000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the f in f90 capital for consistency. 2024-06-03 16:29:06 -05003d2c815522ee350d0dcb01d72877541e8317a593Making the f in f90 capital for consistency.deletemt95.f90addmt95.F90src/physics/cam/dadadj_cam.F90b9003c2651a01e173a4dcde48f510b4b01c62b361717525455000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduPR update to err message for convergence failure 2024-06-04 12:24:15 -0600b9003c2651a01e173a4dcde48f510b4b01c62b36PR update to err message for convergence failureeditsrc/physics/cam/dadadj_cam.F90doc/ChangeLogsrc/physics/cam/clubb_intr.F9098b5cfea4b7f53f1f81a65b928638f54810e9b8a1717541534000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.edufix CLUBB interface bug 2024-06-04 16:52:14 -060098b5cfea4b7f53f1f81a65b928638f54810e9b8afix CLUBB interface bugeditdoc/ChangeLogeditsrc/physics/cam/clubb_intr.F90advance_clubb_core_module.F906ab16812ec6b8e1d0e8e98f5dd02e0794363299b1717567979000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking the only change required to make clubb run with openacc in cam. 2024-06-05 00:12:59 -06006ab16812ec6b8e1d0e8e98f5dd02e0794363299bMaking the only change required to make clubb run with openacc in cam.editadvance_clubb_core_module.F90.gitmodules27fa5108184d32e8ea884e5943df3bbdd6073d9b1717600307000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate chem_proc tag with one with .gitignore in it 2024-06-05 09:11:47 -060027fa5108184d32e8ea884e5943df3bbdd6073d9bUpdate chem_proc tag with one with .gitignore in itedit.gitmodulesgit_fleximod/git_fleximod.pytests/test_d_complex.pygit_fleximod/cli.pyc304487aff29425777e08fc5e009320b502821491717608986000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate complex test 2024-06-05 11:36:26 -0600c304487aff29425777e08fc5e009320b50282149update complex testeditgit_fleximod/git_fleximod.pyedittests/test_d_complex.pyeditgit_fleximod/cli.pychem_proc8ca8b13358f476c9df671de8a260f97f0972f9d71717611380000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate chem_proc external 2024-06-05 12:16:20 -06008ca8b13358f476c9df671de8a260f97f0972f9d7update chem_proc externaleditchem_procgit_fleximod/git_fleximod.pyd95f5d61ba381fbef6274eae5547e08d09e1a10d1717618099000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix status issue 2024-06-05 14:08:19 -0600d95f5d61ba381fbef6274eae5547e08d09e1a10dfix status issueeditgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.py0593149d3c106509daa1fbb235fe5b747e26c9a51717618666000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduone more improvement 2024-06-05 14:17:46 -06000593149d3c106509daa1fbb235fe5b747e26c9a5one more improvementeditgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.pytests/test_d_complex.pytests/conftest.py3ff935b835d1793e0840f00230e323efc52fba761717620474000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate tests 2024-06-05 14:47:54 -06003ff935b835d1793e0840f00230e323efc52fba76update testseditgit_fleximod/git_fleximod.pyedittests/conftest.pyedittests/test_d_complex.pybld/namelist_files/namelist_defaults_cam.xml7c661862960a6ea92986c791eb50e849ebd566531717696144000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix clubb_l_do_expldiff_rtm_thlm default values 2024-06-06 13:49:04 -04007c661862960a6ea92986c791eb50e849ebd56653fix clubb_l_do_expldiff_rtm_thlm default valueseditbld/namelist_files/namelist_defaults_cam.xmldoc/ChangeLogad8a31cb838c268870af6253803d03e32eb759bf1717697514000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry 2024-06-06 14:11:54 -0400ad8a31cb838c268870af6253803d03e32eb759bfstart ChangeLog entryeditdoc/ChangeLogsrc/physics/cam/gw_drag.F9003b24aac9ed36495d91ae15da9737463cbc777e01717699298000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.edufixed dims on movmtn table lookup read 2024-06-06 12:41:38 -060003b24aac9ed36495d91ae15da9737463cbc777e0fixed dims on movmtn table lookup readeditsrc/physics/cam/gw_drag.F90pyproject.tomltbump.tomlgit_fleximod/cli.py87640adf43cdd3c30acd258185f128e638cb41ac1717702144000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.7 2024-06-06 13:29:04 -060087640adf43cdd3c30acd258185f128e638cb41acBump to 0.7.7edittbump.tomleditgit_fleximod/cli.pyeditpyproject.tomldoc/ChangeLog74cfa9d7db42c6356505ac98dfc45817a473f92b1717783583000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate ChangeLog for cam6_3_162 2024-06-07 12:06:23 -060074cfa9d7db42c6356505ac98dfc45817a473f92bupdate ChangeLog for cam6_3_162editdoc/ChangeLoggit_fleximod/git_fleximod.pytests/conftest.py2ede182089784488065b93346d301a202df7b3291717857603000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd optional to status output 2024-06-08 08:40:03 -06002ede182089784488065b93346d301a202df7b329add optional to status outputeditgit_fleximod/git_fleximod.pyedittests/conftest.pygit_fleximod/utils.py7ea36dc44c5646bfcf9940ea757c5f8d9f1d97781718056635000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduremove manage_externals error 2024-06-10 15:57:15 -06007ea36dc44c5646bfcf9940ea757c5f8d9f1d9778remove manage_externals erroreditgit_fleximod/utils.pygit_fleximod/cli.pyaf12c80cade77d299629700f91a0095a5cd6545a1718108929000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix spelling 2024-06-11 06:28:49 -0600af12c80cade77d299629700f91a0095a5cd6545afix spellingeditgit_fleximod/cli.py.gitmodulesb62568e7b577235ab4f9ba49854d49587af635511718123953000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduadd temporary CMEPS tag 2024-06-11 12:39:13 -0400b62568e7b577235ab4f9ba49854d49587af63551add temporary CMEPS tagedit.gitmodulescomponents/cmeps87dbac5fbd199f95ce7523a5d650374d26b9eb011718125278000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.educomponents/cmeps updated 2024-06-11 13:01:18 -040087dbac5fbd199f95ce7523a5d650374d26b9eb01components/cmeps updatededitcomponents/cmeps.gitmodulescomponents/cice464c70e6fb5f0b0ce42f76aeee89f02b650b7fb51718128277000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate CICE external 2024-06-11 13:51:17 -0400464c70e6fb5f0b0ce42f76aeee89f02b650b7fb5update CICE externaleditcomponents/ciceedit.gitmodulespyproject.tomltbump.tomlgit_fleximod/cli.py8eae7e3fb53a3c7dff7010e90cd6990ae7f2021d1718213095000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.8 2024-06-12 11:24:55 -06008eae7e3fb53a3c7dff7010e90cd6990ae7f2021dBump to 0.7.8editpyproject.tomleditgit_fleximod/cli.pyedittbump.tomlrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shExternals.cfgjenkins_tests/cam_ne5_gpu_test/Jenkinsfilecime_config_cesm_machines_files/config_machines.xmlrun_scripts/set_up_cam_coarse_res.pycime_config_cesm_machines_files/nvhpc_nelson.cmake8a1dacc37c37fb79da3280ec122ee4eab22b1e541718658196000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating externals file to use newer ccs_config, and making a GPU ne5 runscript and accompanying jenkins test. 2024-06-17 16:03:16 -05008a1dacc37c37fb79da3280ec122ee4eab22b1e54Updating externals file to use newer ccs_config, and making a GPU ne5 runscript and accompanying jenkins test.editrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sheditrun_scripts/set_up_cam_coarse_res.pyaddjenkins_tests/cam_ne5_gpu_test/Jenkinsfileaddcime_config_cesm_machines_files/nvhpc_nelson.cmakeeditcime_config_cesm_machines_files/config_machines.xmleditExternals.cfgrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh423785ccfc1be2ddcea98b2025b9161652cb6a0b1718658708000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving comment because it breaks the line break. 2024-06-17 16:11:48 -0500423785ccfc1be2ddcea98b2025b9161652cb6a0bRemoving comment because it breaks the line break.editrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shjenkins_tests/cam_ne5_gpu_test/Jenkinsfilebdd0cc0253dee2038370e0d4ab4d2fec2198a5591718658962000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding profile source to run script. 2024-06-17 16:16:02 -0500bdd0cc0253dee2038370e0d4ab4d2fec2198a559Adding profile source to run script.editjenkins_tests/cam_ne5_gpu_test/Jenkinsfilebld/configurecime_config/testdefs/testlist_cam.xmldoc/ChangeLogcime_config/config_component.xmlsrc/physics/cam/zm_conv_intr.F90cime_config/config_compsets.xml39f55d0ec54eff5c65450111b2115f79c5ce374a1718659326000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufixes for regression tests 2024-06-17 17:22:06 -040039f55d0ec54eff5c65450111b2115f79c5ce374afixes for regression testseditsrc/physics/cam/zm_conv_intr.F90editcime_config/config_component.xmleditcime_config/testdefs/testlist_cam.xmleditbld/configureeditdoc/ChangeLogeditcime_config/config_compsets.xmldoc/ChangeLogcime_config/testdefs/testlist_cam.xmlbld/namelist_files/namelist_defaults_cam.xmlaa53c84f93a96a7acd96bf14f7728d6f932d94511718729321000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufixes for regression tests 2024-06-18 12:48:41 -0400aa53c84f93a96a7acd96bf14f7728d6f932d9451fixes for regression testseditbld/namelist_files/namelist_defaults_cam.xmleditdoc/ChangeLogeditcime_config/testdefs/testlist_cam.xmlsrc/physics/cam/clubb_intr.F90src/physics/cam/gw_drag.F9012cea0deba763df47d903ad69adb428fec26f76b1718819318000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFix array bound mismatches 2024-06-19 11:48:38 -060012cea0deba763df47d903ad69adb428fec26f76bFix array bound mismatcheseditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/gw_drag.F90src/physics/cam_dev/physpkg.F90src/physics/carma/cam/carma_intr.F90src/physics/cam/gw_drag.F90src/dynamics/fv/dp_coupling.F90src/physics/cam/physpkg.F90src/physics/carma/models/cirrus_dust/carma_cloudfraction.F90src/physics/cam/clubb_intr.F90src/physics/carma/models/cirrus/carma_cloudfraction.F90src/physics/simple/physpkg.F90src/physics/cam/physics_types.F90doc/ChangeLogsrc/physics/cam/vertical_diffusion.F90952cb0737f17f4dbabb1f4b55e2a46c2589c7be71718819895000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurefactor set_wet_to_dry/set_dry_to_wet 2024-06-19 13:58:15 -0400952cb0737f17f4dbabb1f4b55e2a46c2589c7be7refactor set_wet_to_dry/set_dry_to_weteditsrc/physics/cam/physics_types.F90editsrc/physics/cam/vertical_diffusion.F90editsrc/physics/carma/models/cirrus/carma_cloudfraction.F90editsrc/physics/cam/gw_drag.F90editdoc/ChangeLogeditsrc/physics/cam/physpkg.F90editsrc/physics/simple/physpkg.F90editsrc/physics/carma/cam/carma_intr.F90editsrc/physics/carma/models/cirrus_dust/carma_cloudfraction.F90editsrc/physics/cam/clubb_intr.F90editsrc/physics/cam_dev/physpkg.F90editsrc/dynamics/fv/dp_coupling.F90mixing_length.F90advance_clubb_core_module.F90advance_helper_module.F90d5fb86b1bd228c5b17c18f63a17c0a37fead40ae1718832972000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi zm calc (Part 1) - Combine and move call to calc_brunt_vaisala_freq_sqd (#1154) #1145 Combined call to `calc_brunt_vaisala_freq_sqd` in `advance_clubb_core` for both Lscale and taus code - BITCHANGING Call for taus code was moved out and in front of `diagnose_Lscale_from_tau` call and `zm2zt2zm` smoothing of `thlm` was removed. BITCHANGING for taus code due to removed smoothing. 2024-06-19 16:36:12 -0500d5fb86b1bd228c5b17c18f63a17c0a37fead40aeRi zm calc (Part 1) - Combine and move call to calc_brunt_vaisala_freq_sqd (#1154)editadvance_helper_module.F90editmixing_length.F90editadvance_clubb_core_module.F90advance_clubb_core_module.F90mixing_length.F90323b3445d15537a72479ff1c41c59edd6b74f6461718834177000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145 (#1155) Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145 2024-06-19 16:56:17 -0500323b3445d15537a72479ff1c41c59edd6b74f646Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145 (#1155)editadvance_clubb_core_module.F90editmixing_length.F90advance_clubb_core_module.F9096205889b3e27c8f482383f28de8a6dd08d36adb1718884181000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdds blank line so that I can note BIT_CHANGING:5df5fcb3d6c51d6af2e8017d270336eefa75ad3e 2024-06-20 06:49:41 -050096205889b3e27c8f482383f28de8a6dd08d36adbAdds blank line so that I can note BIT_CHANGING:5df5fcb3d6c51d6af2e8017d270336eefa75ad3eeditadvance_clubb_core_module.F90doc/ChangeLog1a3d6cce551dbccf627a0048b7002612fb0e34cb1718891765000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-06-20 09:56:05 -04001a3d6cce551dbccf627a0048b7002612fb0e34cbupdate ChangeLogeditdoc/ChangeLogcomponents/cmeps.gitmodulesdoc/ChangeLogbb7ac76233ebe29819b017c3ca67f41decbe48991718906543000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate CMEPS submodule 2024-06-20 14:02:23 -0400bb7ac76233ebe29819b017c3ca67f41decbe4899update CMEPS submoduleeditcomponents/cmepsedit.gitmoduleseditdoc/ChangeLogsrc/physics/cam/physpkg.F90Externals.cfg1698a761ac5dd562bd96975a8636d134658312831718919728000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduinitialize snapshot outfld fields to 0 in tphysac and tphysbc 2024-06-20 15:42:08 -06001698a761ac5dd562bd96975a8636d13465831283initialize snapshot outfld fields to 0 in tphysac and tphysbceditsrc/physics/cam/physpkg.F90editExternals.cfgbld/configuresrc/physics/cam/dadadj_cam.F90src/physics/cam_dev/physpkg.F90src/physics/cam/physpkg.F90.gitmodulessrc/atmos_physcbc9ce52d255aee5c277462fb70ec84fa0a839871718984074000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate to cam6_3_162 w git-fleximod 2024-06-21 09:34:34 -0600cbc9ce52d255aee5c277462fb70ec84fa0a83987update to cam6_3_162 w git-fleximodeditsrc/atmos_physeditsrc/physics/cam/physpkg.F90editbld/configureedit.gitmoduleseditsrc/physics/cam/dadadj_cam.F90editsrc/physics/cam_dev/physpkg.F90doc/ChangeLog.gitmodulessrc/dynamics/fv36ed85f9cdbb9dd8f968aad1b281078a5d5fb92381719250656000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate fv3 submodule 2024-06-24 13:37:36 -04006ed85f9cdbb9dd8f968aad1b281078a5d5fb9238update fv3 submoduleeditdoc/ChangeLogeditsrc/dynamics/fv3edit.gitmodulesbld/namelist_files/namelist_defaults_cam.xmlc76155113fb36a99ef32657fd4b205a6ea82902d1719251930000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/namelist_files/namelist_defaults_cam.xml 2024-06-24 11:58:50 -0600c76155113fb36a99ef32657fd4b205a6ea82902dUpdate bld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_defaults_cam.xml18573a17b63f8e2956b43fe2f3fcd080e3e167681719251950000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/namelist_files/namelist_defaults_cam.xml 2024-06-24 11:59:10 -060018573a17b63f8e2956b43fe2f3fcd080e3e16768Update bld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_defaults_cam.xml0de66f5c7dcd928f66a1e72e7836bcac85497cd01719251956000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/namelist_files/namelist_defaults_cam.xml 2024-06-24 11:59:16 -06000de66f5c7dcd928f66a1e72e7836bcac85497cd0Update bld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/namelist_defaults_cam.xmlbd8f4228bdd102cf9f912ad86d718d76edccea1a1719251968000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate bld/namelist_files/namelist_defaults_cam.xml 2024-06-24 11:59:28 -0600bd8f4228bdd102cf9f912ad86d718d76edccea1aUpdate bld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmlsrc/chemistry/pp_trop_strat_mam5_ts4/mo_phtadj.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_imp_sol.F90bld/build-namelistsrc/chemistry/pp_trop_strat_mam5_ts4/chem_mech.docsrc/chemistry/pp_trop_strat_mam5_ts4/mo_exp_sol.F90cime_config/config_component.xmlbld/configuresrc/chemistry/pp_trop_strat_mam5_ts4/mo_sim_dat.F90src/chemistry/pp_trop_strat_mam5_ts4/m_spc_id.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_lu_factor.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_rxt_rates_conv.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_lin_matrix.F90src/chemistry/pp_trop_strat_mam5_ts4/m_rxt_id.F90cime_config/config_compsets.xmlbld/config_files/definition.xmlsrc/chemistry/pp_trop_strat_mam5_ts4/mo_nln_matrix.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_adjrxt.F90src/chemistry/pp_trop_strat_mam5_ts4/chem_mech.insrc/chemistry/pp_trop_strat_mam5_ts4/mo_prod_loss.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_indprd.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_lu_solve.F90src/chemistry/pp_trop_strat_mam5_ts4/chem_mods.F90src/chemistry/pp_trop_strat_mam5_ts4/mo_setrxt.F904fd9554729a37e3627b8a3cb1a990b1482953df91719338180000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimplement climate chemistry compset modified: bld/build-namelist modified: bld/config_files/definition.xml modified: bld/configure new file: src/chemistry/pp_trop_strat_mam5_ts4/chem_mech.doc new file: src/chemistry/pp_trop_strat_mam5_ts4/chem_mech.in new file: src/chemistry/pp_trop_strat_mam5_ts4/chem_mods.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/m_rxt_id.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/m_spc_id.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_adjrxt.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_exp_sol.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_imp_sol.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_indprd.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_lin_matrix.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_lu_factor.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_lu_solve.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_nln_matrix.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_phtadj.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_prod_loss.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_rxt_rates_conv.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_setrxt.F90 new file: src/chemistry/pp_trop_strat_mam5_ts4/mo_sim_dat.F90 2024-06-25 11:56:20 -06004fd9554729a37e3627b8a3cb1a990b1482953df9implement climate chemistry compsetaddsrc/chemistry/pp_trop_strat_mam5_ts4/mo_phtadj.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/chem_mods.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_indprd.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/m_rxt_id.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/m_spc_id.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_lin_matrix.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_lu_solve.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_prod_loss.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_setrxt.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/chem_mech.inaddsrc/chemistry/pp_trop_strat_mam5_ts4/mo_nln_matrix.F90editbld/configureeditcime_config/config_compsets.xmladdsrc/chemistry/pp_trop_strat_mam5_ts4/mo_rxt_rates_conv.F90editbld/config_files/definition.xmladdsrc/chemistry/pp_trop_strat_mam5_ts4/mo_sim_dat.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_imp_sol.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/mo_lu_factor.F90addsrc/chemistry/pp_trop_strat_mam5_ts4/chem_mech.docaddsrc/chemistry/pp_trop_strat_mam5_ts4/mo_exp_sol.F90editcime_config/config_component.xmleditbld/build-namelistaddsrc/chemistry/pp_trop_strat_mam5_ts4/mo_adjrxt.F90bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmla1e2b83a6ce8cf99cb29d7c1bbb3c1642627ec601719345476000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd use case file new file: bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml 2024-06-25 13:57:56 -0600a1e2b83a6ce8cf99cb29d7c1bbb3c1642627ec60add use case fileaddbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmlsrc/physics/cam/subcol_SILHS.F90.gitmodulesbld/namelist_files/namelist_defaults_cam.xmlsrc/physics/cam/clubb_intr.F90871336fe1943562556e45def37becc21297c455b1719350943000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdates for the new external 2024-06-25 15:29:03 -0600871336fe1943562556e45def37becc21297c455bUpdates for the new externaleditbld/namelist_files/namelist_defaults_cam.xmledit.gitmoduleseditsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_intr.F90src/physics/cam/phys_control.F90bld/namelist_files/namelist_definition.xmlsrc/physics/cam/gw_drag.F90bld/build-namelistsrc/physics/cam/gw_movmtn.F90bld/namelist_files/namelist_defaults_cam.xmlcf564a8db5f8bb54df99cd34c14de5d9df5ea5af1719355779000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduIntroduce GW namelist options 2024-06-25 16:49:39 -0600cf564a8db5f8bb54df99cd34c14de5d9df5ea5afIntroduce GW namelist optionseditsrc/physics/cam/gw_movmtn.F90editbld/namelist_files/namelist_defaults_cam.xmleditsrc/physics/cam/phys_control.F90editsrc/physics/cam/gw_drag.F90editbld/namelist_files/namelist_definition.xmleditbld/build-namelistcime_config/testdefs/testlist_cam.xmldoc/ChangeLog2651067fa8cfb0dc7b6f59454de8ee6aaf08eb501719402897000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove Vmct test 2024-06-26 07:54:57 -04002651067fa8cfb0dc7b6f59454de8ee6aaf08eb50remove Vmct testeditcime_config/testdefs/testlist_cam.xmleditdoc/ChangeLogtest/system/archive_baseline.shtest/system/test_driver.shdc472dae1b5fa79fa7f5e8b9fbbcd7e765bf54b21719419807000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduudpates for supporting GPU testing 2024-06-26 10:36:47 -0600dc472dae1b5fa79fa7f5e8b9fbbcd7e765bf54b2udpates for supporting GPU testingedittest/system/test_driver.shedittest/system/archive_baseline.shdoc/ChangeLog68ff8181b6c1c9ec6e7cfd039dfa3586bc5d50f61719426207000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-06-26 14:23:27 -040068ff8181b6c1c9ec6e7cfd039dfa3586bc5d50f6update ChangeLogeditdoc/ChangeLogdoc/ChangeLogsrc/physics/cam/physics_types.F90b2de02b5a3ca72e1273a2fa5e5b0deb0a77a8a311719428725000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-06-26 15:05:25 -0400b2de02b5a3ca72e1273a2fa5e5b0deb0a77a8a31address review commentseditdoc/ChangeLogeditsrc/physics/cam/physics_types.F90git_fleximod/git_fleximod.pypoetry.lock0c3d68371e5a5e1cac6949fbee94713264a97bc51719430939000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edudependabot changes and issue #48 2024-06-26 13:42:19 -06000c3d68371e5a5e1cac6949fbee94713264a97bc5dependabot changes and issue #48editgit_fleximod/git_fleximod.pyeditpoetry.lockCODE_OF_CONDUCT.md46043f0104254dffd1b1da34c57ad940124e40d01719431167000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd code of conduct (issue #35) 2024-06-26 13:46:07 -060046043f0104254dffd1b1da34c57ad940124e40d0add code of conduct (issue #35)addCODE_OF_CONDUCT.mdpoetry.lock31ce71bf80dd69823ca501d6902eb080d747cebb1719431608000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduuse poetry update to update poetry.lock file 2024-06-26 13:53:28 -060031ce71bf80dd69823ca501d6902eb080d747cebbuse poetry update to update poetry.lock fileeditpoetry.lockpyproject.tomltbump.tomlgit_fleximod/cli.py53220198c5e53fd11026df8ef71b11ef4d5a32331719432438000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.7.9 2024-06-26 14:07:18 -060053220198c5e53fd11026df8ef71b11ef4d5a3233Bump to 0.7.9edittbump.tomleditgit_fleximod/cli.pyeditpyproject.tomlsrc/ionosphere/waccmx/edyn_init.F90src/ionosphere/waccmx/edyn_grid_comp.F90src/ionosphere/waccmx/ionosphere_interface.F90src/ionosphere/waccmx/edyn_phys_grid.F90815fcdcfeed63dcb6dc5883ff694bfaeb270e6f01719493295000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduremove gridded component code from waccmx -- not needed with nuopc mediator deleted: src/ionosphere/waccmx/edyn_grid_comp.F90 new file: src/ionosphere/waccmx/edyn_phys_grid.F90 modified: src/ionosphere/waccmx/edyn_init.F90 modified: src/ionosphere/waccmx/ionosphere_interface.F90 2024-06-27 07:01:35 -0600815fcdcfeed63dcb6dc5883ff694bfaeb270e6f0remove gridded component code from waccmx -- not needed with nuopc mediatoraddsrc/ionosphere/waccmx/edyn_phys_grid.F90deletesrc/ionosphere/waccmx/edyn_grid_comp.F90editsrc/ionosphere/waccmx/ionosphere_interface.F90editsrc/ionosphere/waccmx/edyn_init.F90bld/namelist_files/namelist_defaults_cam.xmlbld/build-namelista452d1345532beb32818092e7b81215232da4ca01719493296000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduset rxn_rate_sums default for WACCMX-mad modified: bld/build-namelist modified: bld/namelist_files/namelist_defaults_cam.xml 2024-06-27 07:01:36 -0600a452d1345532beb32818092e7b81215232da4ca0set rxn_rate_sums default for WACCMX-madeditbld/build-namelisteditbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/waccmx_ma_2000_cam4.xmld2e1390216892555e46352367dd043c0ef6566281719493296000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduremove zm hist fields from waccmx_ma_2000_cam4 on unstruct grids 2024-06-27 07:01:36 -0600d2e1390216892555e46352367dd043c0ef656628remove zm hist fields from waccmx_ma_2000_cam4 on unstruct gridseditbld/namelist_files/use_cases/waccmx_ma_2000_cam4.xmlsrc/ionosphere/waccmx/edyn_phys_grid.F90d133c0df5da98295f8d4bda1a3ed8f5aa840e8161719493296000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd comment modified: src/ionosphere/waccmx/edyn_phys_grid.F90 2024-06-27 07:01:36 -0600d133c0df5da98295f8d4bda1a3ed8f5aa840e816add commenteditsrc/ionosphere/waccmx/edyn_phys_grid.F90cime_config/buildcppcime_config/buildlib1991e3da11b57f0ae7bc0613a37631d76b5585cf1719505132000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edufix the path to fms for fv3 build, remove mct reference 2024-06-27 10:18:52 -06001991e3da11b57f0ae7bc0613a37631d76b5585cffix the path to fms for fv3 build, remove mct referenceeditcime_config/buildcppeditcime_config/buildlibsrc/physics/clubb9cf174c85d9a32c57d4aeafeaf81cc188c0e7da11719509921000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdating clubb submodule 2024-06-27 11:38:41 -06009cf174c85d9a32c57d4aeafeaf81cc188c0e7da1Updating clubb submoduleeditsrc/physics/clubbcime_config/testdefs/testlist_cam.xmlbld/namelist_files/use_cases/waccmx_ma_hist_cam6.xml3ecd3d8d2b84e151c5d52fe0f811b4567bbb6b1a1719516040000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd multi-inst test; fix usecase modified: bld/namelist_files/use_cases/waccmx_ma_hist_cam6.xml modified: cime_config/testdefs/testlist_cam.xml 2024-06-27 13:20:40 -06003ecd3d8d2b84e151c5d52fe0f811b4567bbb6b1aadd multi-inst test; fix usecaseeditcime_config/testdefs/testlist_cam.xmleditbld/namelist_files/use_cases/waccmx_ma_hist_cam6.xmlsrc/chemistry/modal_aero/aero_model.F90src/chemistry/modal_aero/modal_aero_convproc.F90doc/ChangeLogsrc/physics/cam/physpkg.F90src/chemistry/bulk_aero/aero_model.F90src/physics/cam7/physpkg.F9008e5d51f7956f034f7f5da9dfb23875a762229461719520421000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduaerosol wet removal fixes modified: src/chemistry/bulk_aero/aero_model.F90 modified: src/chemistry/modal_aero/aero_model.F90 modified: src/chemistry/modal_aero/modal_aero_convproc.F90 modified: src/physics/cam/physpkg.F90 modified: src/physics/cam7/physpkg.F90 modified: doc/ChangeLog 2024-06-27 14:33:41 -060008e5d51f7956f034f7f5da9dfb23875a76222946aerosol wet removal fixeseditsrc/physics/cam7/physpkg.F90editdoc/ChangeLogeditsrc/chemistry/bulk_aero/aero_model.F90editsrc/physics/cam/physpkg.F90editsrc/chemistry/modal_aero/modal_aero_convproc.F90editsrc/chemistry/modal_aero/aero_model.F90src/dynamics/se/dycore/global_norms_mod.F90src/physics/cam/hb_diff.F90src/physics/cam/pbl_utils.F902a256324b0858c304d016195c197f3e184fae9a71719529261000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.educhange HB diffusion in CAM7 to only be active for Ri<0 + stability mods for dycore 2024-06-27 17:01:01 -06002a256324b0858c304d016195c197f3e184fae9a7change HB diffusion in CAM7 to only be active for Ri<0 + stability mods for dycoreeditsrc/physics/cam/pbl_utils.F90editsrc/physics/cam/hb_diff.F90editsrc/dynamics/se/dycore/global_norms_mod.F90doc/ChangeLog759804dd45d8f7b4536b2cee41e64f2c9d5708fd1719529637000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduupdate ChangeLog 2024-06-27 17:07:17 -0600759804dd45d8f7b4536b2cee41e64f2c9d5708fdupdate ChangeLogeditdoc/ChangeLogdoc/ChangeLog3d5dc1f814b92f5b2b584adcee6fa5a9fa8acdf51719594554000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comadd Changelog 2024-06-28 11:09:14 -06003d5dc1f814b92f5b2b584adcee6fa5a9fa8acdf5add Changelogeditdoc/ChangeLogdoc/ChangeLog88ce66c5d6ef59ae6f3791f5044344b2f6e4a1731719594895000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate Changelog for commit 2024-06-28 11:14:55 -060088ce66c5d6ef59ae6f3791f5044344b2f6e4a173update Changelog for commiteditdoc/ChangeLogdoc/ChangeLog4f503c7d0a8343d6c36e96fe8de49b59de1424551719595069000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comanother Changelog update for commit 2024-06-28 11:17:49 -06004f503c7d0a8343d6c36e96fe8de49b59de142455another Changelog update for commiteditdoc/ChangeLogdoc/ChangeLogace3d1f8ba6de576e5fb8fdad10ecf051de445661719595723000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comanother Changelog update for commit 2024-06-28 11:28:43 -0600ace3d1f8ba6de576e5fb8fdad10ecf051de44566another Changelog update for commiteditdoc/ChangeLogsrc/dynamics/se/dycore/prim_advance_mod.F908162bedcfdc05a8b8156d047d4f37b4a8fbcd9451719600807000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduNo frictional heating in del4 sponge (SE dycore) 2024-06-28 12:53:27 -06008162bedcfdc05a8b8156d047d4f37b4a8fbcd945No frictional heating in del4 sponge (SE dycore)editsrc/dynamics/se/dycore/prim_advance_mod.F90doc/ChangeLog8774b9b6de6f31fd290bac0045c39d38e3236c6c1719601133000http://carson.math.uwm.edu/jenkins/user/pelpelpel@ucar.eduupdate Changelog 2024-06-28 12:58:53 -06008774b9b6de6f31fd290bac0045c39d38e3236c6cupdate Changelogeditdoc/ChangeLogdoc/ChangeLog69f8c5673aac0e29fcc594d0d9dfe4e5a226af4c1719602665000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-06-28 13:24:25 -060069f8c5673aac0e29fcc594d0d9dfe4e5a226af4cChangeLog drafteditdoc/ChangeLogdoc/ChangeLogf7f8f70baa6274d0e9362660aceaa814928ab0a81719663758000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-06-29 06:22:38 -0600f7f8f70baa6274d0e9362660aceaa814928ab0a8ChangeLog updateeditdoc/ChangeLogdoc/ChangeLog0943a8f38178b789f967f0ebfc11bb64991390fa1719663947000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-06-29 06:25:47 -06000943a8f38178b789f967f0ebfc11bb64991390faChangeLog updateeditdoc/ChangeLogdoc/ChangeLogsrc/physics/cam/cospsimulator_intr.F90src/physics/cam/ref_pres.F909ebd4be3cf9de171c811029109a9b7adfa9913081719849653000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduaddress review comments 2024-07-01 12:00:53 -04009ebd4be3cf9de171c811029109a9b7adfa991308address review commentseditdoc/ChangeLogeditsrc/physics/cam/cospsimulator_intr.F90editsrc/physics/cam/ref_pres.F90src/physics/cam/cospsimulator_intr.F90b21081530655cb0407a46007f26471f4068c2ec71719857731000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix misplaced USE_COSP ifdef 2024-07-01 14:15:31 -0400b21081530655cb0407a46007f26471f4068c2ec7fix misplaced USE_COSP ifdefeditsrc/physics/cam/cospsimulator_intr.F90src/physics/cam/gw_movmtn.F90src/physics/cam/clubb_intr.F90src/physics/cam/gw_drag.F90112d2fb1737aabfd191b307af2f3c53195fa2c1a1719868318000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFinal round of initial cleanup 2024-07-01 15:11:58 -0600112d2fb1737aabfd191b307af2f3c53195fa2c1aFinal round of initial cleanupeditsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/gw_drag.F90doc/ChangeLogbffdd2ea3e5ee294451ce2effd23e31c6556e7df1719870649000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-01 17:50:49 -0400bffdd2ea3e5ee294451ce2effd23e31c6556e7dfupdate ChangeLogeditdoc/ChangeLogtests/test_e_complex_update.pygit_fleximod/git_fleximod.pygit_fleximod/gitmodules.pytests/conftest.pya7d8b4e3e7e0661b98ba03dfc3808b84c6ec6ff11719875210000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall pytests passing 2024-07-01 17:06:50 -0600a7d8b4e3e7e0661b98ba03dfc3808b84c6ec6ff1all pytests passingeditgit_fleximod/git_fleximod.pyaddtests/test_e_complex_update.pyeditgit_fleximod/gitmodules.pyedittests/conftest.pysrc/physics/cam/gw_movmtn.F90a8b677d083830c1949397644417259c77a8fd4ff1719890092000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduAdded DOI for ref in gw_movmtn.F90 2024-07-01 21:14:52 -0600a8b677d083830c1949397644417259c77a8fd4ffAdded DOI for ref in gw_movmtn.F90editsrc/physics/cam/gw_movmtn.F90src/physics/cam/gw_movmtn.F90fcd72a19cfb1d6099ffcef4bac30f8041c9d403e1719931013000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduMinor format change 2024-07-02 08:36:53 -0600fcd72a19cfb1d6099ffcef4bac30f8041c9d403eMinor format changeeditsrc/physics/cam/gw_movmtn.F90src/chemistry/mozart/mo_usrrxt.F90bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml39e1a8ab4055f023bffe5677b536889056fafe461719931175000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdates to user rxtns for tagged co; set rxn_rate_sums modified: bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml modified: src/chemistry/mozart/mo_usrrxt.F90 2024-07-02 08:39:35 -060039e1a8ab4055f023bffe5677b536889056fafe46updates to user rxtns for tagged co; set rxn_rate_sumseditsrc/chemistry/mozart/mo_usrrxt.F90editbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmldoc/ChangeLogd02454c41c26fca67a68aa7e97219ba5ce0a47671719946641000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-02 14:57:21 -0400d02454c41c26fca67a68aa7e97219ba5ce0a4767update ChangeLogeditdoc/ChangeLogmixing_length.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90advance_helper_module.F901af8762fc4b0c31a64535f1cb6689d893d0369261719948922000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156) CLUBB ticket #1145 Includes previous steps: * First step: Move call to calc_bv * Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145 Newest changes: Ri_zm calc (Part 2) - Move brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd `brunt_vaisala_frq_sqd_smth` is now calculated in subroutine `calc_brunt_vaisala_freq_sqd` and it is now written to disk in `advance_clubb_core` with all the other `brunt_vaisala` variables. Unfortunately, I had to make a couple more changes since moving this calculation into `calc_brunt_vaisala_freq_sqd` meant that any subroutine involved in calling `calc_stability_correction` would need to get `l_modify_limiters_for_cnvg_test` fed in, because `calc_brunt_vaisala_freq_sqd` is also called in `calc_stability_correction`. This commit is BIT_CHANGING since `brunt_vaisala_frq_sqd_smth` used to be all zeros before this change in Lscale mode and now it is actually calculated. BFB in taus code. 2024-07-02 14:35:22 -05001af8762fc4b0c31a64535f1cb6689d893d036926Ri_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156)editmixing_length.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editadvance_xm_wpxp_module.F90cime_config/testdefs/testlist_cam.xmlbld/namelist_files/namelist_defaults_cam.xmlfa5ea518c298ad8d94b6abc05b8d7300101bf7f11720017347000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edulow res IC and izumi test modified: bld/namelist_files/namelist_defaults_cam.xml modified: cime_config/testdefs/testlist_cam.xml 2024-07-03 08:35:47 -0600fa5ea518c298ad8d94b6abc05b8d7300101bf7f1low res IC and izumi testeditcime_config/testdefs/testlist_cam.xmleditbld/namelist_files/namelist_defaults_cam.xmldoc/ChangeLog7a3a23c4c65be77e5a18b160e173fde0e124e4111720018670000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-03 10:57:50 -04007a3a23c4c65be77e5a18b160e173fde0e124e411update ChangeLogeditdoc/ChangeLogbld/namelist_files/namelist_defaults_cam.xmlbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmlbld/build-namelist18d7e5c61a068e285005f05b9a42223c02189d231720020360000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduset flbc options in use case file, rxn_rate_sums in namelist_defaults modified: bld/build-namelist modified: bld/namelist_files/namelist_defaults_cam.xml modified: bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml 2024-07-03 09:26:00 -060018d7e5c61a068e285005f05b9a42223c02189d23set flbc options in use case file, rxn_rate_sums in namelist_defaultseditbld/namelist_files/namelist_defaults_cam.xmleditbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmleditbld/build-namelistcomponents/cicebld/build-namelist34b76d5ac97847fe000f9f9a92841711c7878a451720038646000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduTurn on GW Moving Mountain by default for cam7 runs 2024-07-03 14:30:46 -060034b76d5ac97847fe000f9f9a92841711c7878a45Turn on GW Moving Mountain by default for cam7 runseditbld/build-namelisteditcomponents/cicesrc/physics/cam/physpkg.F90src/physics/cam_dev/physpkg.F90src/physics/cam/cloud_diagnostics.F9027e49fd963e9210e28d2a529aa63f9793138debb1720049369000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinitial pbuf water path fields to zero for cloud optics modified: src/physics/cam/cloud_diagnostics.F90 modified: src/physics/cam/physpkg.F90 modified: src/physics/cam_dev/physpkg.F90 2024-07-03 17:29:29 -060027e49fd963e9210e28d2a529aa63f9793138debbinitial pbuf water path fields to zero for cloud opticseditsrc/physics/cam/cloud_diagnostics.F90editsrc/physics/cam/physpkg.F90editsrc/physics/cam_dev/physpkg.F90git_fleximod/git_fleximod.pygit_fleximod/gitinterface.py82dd7a41d1b01092a968e2126f6f300f872d28121720101592000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutest_b_update now working 2024-07-04 07:59:52 -060082dd7a41d1b01092a968e2126f6f300f872d2812test_b_update now workingeditgit_fleximod/gitinterface.pyeditgit_fleximod/git_fleximod.pygit_fleximod/submodule.py72211d20b74babf0f9996391a1f7f7f4091f17c21720104288000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd the new submodule class 2024-07-04 08:44:48 -060072211d20b74babf0f9996391a1f7f7f4091f17c2add the new submodule classaddgit_fleximod/submodule.pygit_fleximod/submodule.py2b021fdd76e31b4c7addaae97db0241d557183a21720105725000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduadd documentation to submodule.py 2024-07-04 09:08:45 -06002b021fdd76e31b4c7addaae97db0241d557183a2add documentation to submodule.pyeditgit_fleximod/submodule.pygit_fleximod/submodule.pygit_fleximod/git_fleximod.py143abac699cd344b978b3fcd4fc76b9e21c409a51720109996000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edutests a-d all pass 2024-07-04 10:19:56 -0600143abac699cd344b978b3fcd4fc76b9e21c409a5tests a-d all passeditgit_fleximod/submodule.pyeditgit_fleximod/git_fleximod.pygit_fleximod/submodule.pytests/test_e_complex_update.py62a338b531bbf858b5d941d4f8f7af5166328dcf1720110811000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall pytests now passing 2024-07-04 10:33:31 -060062a338b531bbf858b5d941d4f8f7af5166328dcfall pytests now passingeditgit_fleximod/submodule.pyedittests/test_e_complex_update.pygit_fleximod/submodule.pygit_fleximod/git_fleximod.pyded91fda0c896e5967b6df8dd2d18895f9dae0961720116929000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduall tests passing, issue #50 fixed 2024-07-04 12:15:29 -0600ded91fda0c896e5967b6df8dd2d18895f9dae096all tests passing, issue #50 fixededitgit_fleximod/submodule.pyeditgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.pydae1c82884feb69249dd0616c2a18131252ef4d21720118732000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edunow working with issue #50 2024-07-04 12:45:32 -0600dae1c82884feb69249dd0616c2a18131252ef4d2now working with issue #50editgit_fleximod/git_fleximod.pygit_fleximod/git_fleximod.py53fce573bcad0ca1ae5c78013df8a42ad3414e5b1720131022000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduno need to make submodule objects persist 2024-07-04 16:10:22 -060053fce573bcad0ca1ae5c78013df8a42ad3414e5bno need to make submodule objects persisteditgit_fleximod/git_fleximod.pycime_config/testdefs/testlist_cam.xmlb172920f744d0d6d5003c82ce979c60ee673bc691720185487000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate test list modified: cime_config/testdefs/testlist_cam.xml 2024-07-05 07:18:07 -0600b172920f744d0d6d5003c82ce979c60ee673bc69update test listeditcime_config/testdefs/testlist_cam.xmlpyproject.tomltbump.tomlgit_fleximod/cli.pyc624b61124d911f52ca8eead618ed2dd3c1b21711720189857000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.8.0 2024-07-05 08:30:57 -0600c624b61124d911f52ca8eead618ed2dd3c1b2171Bump to 0.8.0editpyproject.tomledittbump.tomleditgit_fleximod/cli.pysrc/physics/cam/cloud_diagnostics.F90494583acb0682d346aae07f01b50463adb08be5a1720198037000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinitialize water paths to zero only on startup runs modified: src/physics/cam/cloud_diagnostics.F90 2024-07-05 10:47:17 -0600494583acb0682d346aae07f01b50463adb08be5ainitialize water paths to zero only on startup runseditsrc/physics/cam/cloud_diagnostics.F90.gitmodulesf1c87ad65046d648affd6cb2ada8c0dec25d3ed61720446372000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate .gitmodules 2024-07-08 09:46:12 -0400f1c87ad65046d648affd6cb2ada8c0dec25d3ed6update .gitmodulesedit.gitmodules.gitmodules4bfbee8bb14d039047bdf6aa16292bfa470830451720451319000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate to share1.1.2 2024-07-08 11:08:39 -04004bfbee8bb14d039047bdf6aa16292bfa47083045update to share1.1.2edit.gitmodulessrc/ionosphere/waccmx/wei05sc.F9020463efb60eefe990f0d1cc42056c8a9bf7fd34d1720451763000http://carson.math.uwm.edu/jenkins/user/bdobbinsbdobbinsbdobbins@gmail.comSwitch log-gamma call to a Fortran 2008 intrinsic 2024-07-08 09:16:03 -060020463efb60eefe990f0d1cc42056c8a9bf7fd34dSwitch log-gamma call to a Fortran 2008 intrinsiceditsrc/ionosphere/waccmx/wei05sc.F90.gitmodules02ea7e539b0e8792b5fc279ba209cddba96065bf1720453413000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate to cmeps1.0.0 2024-07-08 11:43:33 -040002ea7e539b0e8792b5fc279ba209cddba96065bfupdate to cmeps1.0.0edit.gitmodulesgit_fleximod/submodule.pygit_fleximod/git_fleximod.pygit_fleximod/gitinterface.pye9cd2bee6200f7bde68dec6e10d5491e3171cc4d1720453775000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.edubetter fix for issue with ssh access 2024-07-08 09:49:35 -0600e9cd2bee6200f7bde68dec6e10d5491e3171cc4dbetter fix for issue with ssh accesseditgit_fleximod/gitinterface.pyeditgit_fleximod/submodule.pyeditgit_fleximod/git_fleximod.pycimecomponents/cmepsshare9acbc0210acec9cc9f76acd94c0ed64e368268341720454692000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edusubmodule diffs 2024-07-08 12:04:52 -04009acbc0210acec9cc9f76acd94c0ed64e36826834submodule diffseditshareeditcimeeditcomponents/cmepspyproject.tomltbump.tomlgit_fleximod/cli.pya6e43fcfd70795763c0fed13d3b0d8ae9151dcc71720454909000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.8.1 2024-07-08 10:08:29 -0600a6e43fcfd70795763c0fed13d3b0d8ae9151dcc7Bump to 0.8.1edittbump.tomleditgit_fleximod/cli.pyeditpyproject.tomlsrc/dynamics/eul/iop.F906244ced56660b6f41816137572921df4f1331d3b1720455743000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduremove bfb line for testing 2024-07-08 10:22:23 -06006244ced56660b6f41816137572921df4f1331d3bremove bfb line for testingeditsrc/dynamics/eul/iop.F90bld/configuresrc/physics/simple/tj2016_cam.F90src/physics/simple/tj2016.F90.gitmodulesdoc/ChangeLog7784099ef51ac2d722b913993f518a59c14646df1720468876000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comcam6_4_007: CCPP-ized TJ2016 (#1070) Tag name: cam6_4_007 Originator(s): Michael Waxmonsky Date: 7/8/2024 One-line Summary: cam6_4_007: CCPP-ized TJ2016 Github PR URL: https://github.com/ESCOMP/CAM/pull/1070 Purpose of changes (include the issue number and title text for each relevant GitHub issue): - Exchanges TJ2016 source from cam/physics/simple to atmospheric_physics submodule (https://github.com/ESCOMP/atmospheric_physics/pull/92) Describe any changes made to build system: - Adds src/atmos_phys/tj2016 to list of folders to search for compiling in <case>/bld/atm/obj/Filepath used during ./preview_namelists Describe any changes made to the namelist: N/A List any changes to the defaults for the boundary datasets: N/A Describe any substantial timing or memory changes: N/A Code reviewed by: cacraigucar, nusbaume List all files eliminated: $ git diff --name-status cam_development..tj2016 | grep ^D D src/physics/simple/tj2016.F90 List all files added and what they do: N/A List all existing files that have been modified, and describe the changes: $ git diff --name-status cam_development..tj2016 | grep ^M M .gitmodules - Updating atmospheric_physics to tag atmos_phys0_03_000 M bld/configure - See comment to change in build system M src/physics/simple/tj2016_cam.F90 - Updated API into CCPP-ized TJ2016 precip and sfc_plb_hs run functions (See https://github.com/ESCOMP/atmospheric_physics/pull/92 for API change desciription). If there were any failures reported from running test_driver.sh on any test platform, and checkin with these failures has been OK'd by the gatekeeper, then copy the lines from the td.*.status files for the failed tests to the appropriate machine below. All failed tests must be justified. derecho/intel/aux_cam: ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s (Overall: FAIL) details: FAIL ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s COMPARE_base_rest SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s (Overall: FAIL) details: FAIL SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s SHAREDLIB_BUILD time=3 SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s (Overall: PEND) details: PEND SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s SHAREDLIB_BUILD SMS_D_Ln9.T42_T42.FSCAM.derecho_intel.cam-outfrq9s (Overall: PEND) details: PEND SMS_D_Ln9.T42_T42.FSCAM.derecho_intel.cam-outfrq9s RUN RERUN - Pre-existing failures izumi/nag/aux_cam: DAE.f45_f45_mg37.FHS94.izumi_nag.cam-dae (Overall: FAIL) details: FAIL DAE.f45_f45_mg37.FHS94.izumi_nag.cam-dae RUN time=12 PEND DAE.f45_f45_mg37.FHS94.izumi_nag.cam-dae COMPARE_base_da - Pre-existing failure izumi/gnu/aux_cam: N/A CAM tag used for the baseline comparison tests if different than previous tag: - cesm2_3_alpha17g for manually testing FTJ16 compset, previous baseline for aux_cam tests Summarize any changes to answers, i.e., - what code configurations: - what platforms/compilers: - nature of change (roundoff; larger than roundoff but same climate; new climate): N/A 2024-07-08 16:01:16 -04007784099ef51ac2d722b913993f518a59c14646dfcam6_4_007: CCPP-ized TJ2016 (#1070)deletesrc/physics/simple/tj2016.F90edit.gitmoduleseditsrc/physics/simple/tj2016_cam.F90editdoc/ChangeLogeditbld/configuresrc/atmos_phys2b07c41dc778131c97edc084be3c115a78916de21720477960000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd missing commit for src/atmos_phys from previous tag 2024-07-08 16:32:40 -06002b07c41dc778131c97edc084be3c115a78916de2Add missing commit for src/atmos_phys from previous tageditsrc/atmos_physgit_fleximod/submodule.pya90de4f8481e9c28a682da3189f84948dffd1bd81720544509000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduupdate to fetch tag first 2024-07-09 11:01:49 -0600a90de4f8481e9c28a682da3189f84948dffd1bd8update to fetch tag firsteditgit_fleximod/submodule.pypyproject.tomltbump.tomlgit_fleximod/cli.py75a03373577f5ed19a00d2c387ca36bff1172d761720545296000http://carson.math.uwm.edu/jenkins/user/jedwardsjedwardsjedwards@ucar.eduBump to 0.8.2 2024-07-09 11:14:56 -060075a03373577f5ed19a00d2c387ca36bff1172d76Bump to 0.8.2editpyproject.tomleditgit_fleximod/cli.pyedittbump.tomlsrc/atmos_phys88d8c3a59fd56dbf3269d9a4c6d6221f1eead0f41720564887000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate atmos_phys submodule for some reason 2024-07-09 16:41:27 -060088d8c3a59fd56dbf3269d9a4c6d6221f1eead0f4Update atmos_phys submodule for some reasoneditsrc/atmos_physbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmlbld/build-namelistca03c4aa03e98f0a3befbd4c5606265c126d32b31720621362000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude megan emissions settings modified: bld/build-namelist modified: bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml 2024-07-10 08:22:42 -0600ca03c4aa03e98f0a3befbd4c5606265c126d32b3include megan emissions settingseditbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmleditbld/build-namelistdoc/ChangeLogd67d7cb177b3e96f8938f16b9a4a1aeb6eb7ad041720624968000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_4_008 2024-07-10 09:22:48 -0600d67d7cb177b3e96f8938f16b9a4a1aeb6eb7ad04ChangeLog for cam6_4_008editdoc/ChangeLogrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.shcime_config_cesm_machines_files/config_machines.xmlrun_scripts/set_up_cam_coarse_res.pycime_config_cesm_machines_files/intel_nelson.cmakecustom_ccs_config_files/larson-group.cmakecime_config_cesm_machines_files/gnu_nelson.cmakerun_scripts/run_scam.bashcustom_ccs_config_files/nvhpc_larson-group.cmakecustom_ccs_config_files/config_machines.xmlrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shrun_scripts/run_cesm_uwm_coarse_res.shcime_config_cesm_machines_files/nvhpc_nelson.cmake7bfe29a485e7b753a079ade0b887e212f7f489891720643790000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSpack updates (#173) Updates to make cam work with the new spack system. This also includes changing the traditional "nelson" name for our machine to a general "larson-group" one. Also moving our custom cmake and config files from "cime_config_cesm_machines_files" to "custom_ccs_config_files" because the new build system in cam is named ccs_config. * Initial changes to get code working with the new spack+module system. See https://github.com/larson-group/sys_admin/issues/829 * Making module versions specific in config_machines. This will prevent cam from breaking if someone installs another version of a package like esmf. 2024-07-10 15:36:30 -05007bfe29a485e7b753a079ade0b887e212f7f48989Spack updates (#173)deletecime_config_cesm_machines_files/config_machines.xmldeletecime_config_cesm_machines_files/gnu_nelson.cmakeeditrun_scripts/run_scam.basheditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sheditrun_scripts/run_cesm_uwm_coarse_res.sheditrun_scripts/set_up_cam_coarse_res.pyaddcustom_ccs_config_files/config_machines.xmladdcustom_ccs_config_files/nvhpc_larson-group.cmakeeditrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shaddcustom_ccs_config_files/larson-group.cmakedeletecime_config_cesm_machines_files/intel_nelson.cmakedeletecime_config_cesm_machines_files/nvhpc_nelson.cmakejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_ne5_gpu_test/Jenkinsfilerun_scripts/run_scam.bashjenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfiled90b25c0dd5e712488e84d9668f1e2049ecbd5621720645781000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking changes to jenkins tests to get running with new system and new Makefile changes. Also setting run_scam debug back to true by default. 2024-07-10 16:09:41 -0500d90b25c0dd5e712488e84d9668f1e2049ecbd562Making changes to jenkins tests to get running with new system and new Makefile changes. Also setting run_scam debug back to true by default.editjenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfileeditjenkins_tests/cam_scam_gfortran_test/Jenkinsfileeditjenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfileeditjenkins_tests/cam_ne5_gpu_test/Jenkinsfileeditjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfileeditrun_scripts/run_scam.basheditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_test/Jenkinsfileb70e8c0c5c561fba09acca2b9579b2cf58ec1a851720646742000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRenaming tests to make clear which uses debugging and which doesnt. Intel-oneapi currently doesn't work with debugging, see https://github.com/larson-group/sys_admin/issues/829\#issuecomment-2212729099 2024-07-10 16:25:42 -0500b70e8c0c5c561fba09acca2b9579b2cf58ec1a85Renaming tests to make clear which uses debugging and which doesnt. Intel-oneapi currently doesn't work with debugging, see https://github.com/larson-group/sys_admin/issues/829\#issuecomment-2212729099deletejenkins_tests/cam_scam_gfortran_test/Jenkinsfileaddjenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfiledeletejenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfileaddjenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfilejenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile47ed9fe3c8d7a548784fd6806a86a16f04345f9d1720647087000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe bin diff tests need to be run on carson because that's where we store the test config files that we use to store the results. 2024-07-10 16:31:27 -050047ed9fe3c8d7a548784fd6806a86a16f04345f9dThe bin diff tests need to be run on carson because that's where we store the test config files that we use to store the results.editjenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfileeditjenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfilejenkins_tests/cam_ne5_gpu_test/Jenkinsfilecustom_ccs_config_files/config_machines.xmljenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfilejenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfilejenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilejenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile8ec5b1797b34ec4da71673e6244550b5cd84f5d01720648713000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe module loading is handled by the ccs_config code, so we don't need module commands in jenkinsfiles. Also loading intel-oneapi-mkl for intel builds. 2024-07-10 16:58:33 -05008ec5b1797b34ec4da71673e6244550b5cd84f5d0The module loading is handled by the ccs_config code, so we don't need module commands in jenkinsfiles. Also loading intel-oneapi-mkl for intel builds.editjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfileeditjenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfileeditjenkins_tests/cam_ne5_gpu_test/Jenkinsfileeditjenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfileeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfileeditcustom_ccs_config_files/config_machines.xmleditjenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfilebld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml8750181a6ddedab1cbb0aa110b2c5a03552b8ef11720652012000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduinclude transient solar input file modified: bld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xml 2024-07-10 16:53:32 -06008750181a6ddedab1cbb0aa110b2c5a03552b8ef1include transient solar input fileeditbld/namelist_files/use_cases/hist_trop_strat_ts4_cam7.xmlsrc/chemistry/modal_aero/aero_model.F90src/chemistry/aerosol/aerosol_properties_mod.F90src/chemistry/aerosol/aero_deposition_cam.F90src/chemistry/aerosol/modal_aerosol_properties_mod.F90353c2e612b3bb4307979f17b7d0caeab038597fa1720653027000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edugeneralized aerosol fluxes to surface with bulk dust rebin new file: src/chemistry/aerosol/aero_deposition_cam.F90 modified: src/chemistry/aerosol/aero_deposition_cam.F90 modified: src/chemistry/aerosol/aerosol_properties_mod.F90 modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90 modified: src/chemistry/modal_aero/aero_model.F90 2024-07-10 17:10:27 -0600353c2e612b3bb4307979f17b7d0caeab038597fageneralized aerosol fluxes to surface with bulk dust rebineditsrc/chemistry/aerosol/aerosol_properties_mod.F90addsrc/chemistry/aerosol/aero_deposition_cam.F90editsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90editsrc/chemistry/modal_aero/aero_model.F90src/physics/cam/dadadj_cam.F90src/atmos_physb3c74ce4497ad394c052a834befc3a6c0c57fbb41720714326000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate cam to match atmos_phys changes in dadadj (return heating rate in ptend%s) 2024-07-11 10:12:06 -0600b3c74ce4497ad394c052a834befc3a6c0c57fbb4update cam to match atmos_phys changes in dadadj (return heating rate in ptend%s)editsrc/atmos_physeditsrc/physics/cam/dadadj_cam.F90doc/ChangeLog954bfa849cb78a4aec4b3fb152d8dc58d6e1ac7a1720725325000http://carson.math.uwm.edu/jenkins/user/bdobbinsbdobbinsbdobbins@gmail.comUpdated ChangeLog in advance of cam6_4_009 tag 2024-07-11 13:15:25 -0600954bfa849cb78a4aec4b3fb152d8dc58d6e1ac7aUpdated ChangeLog in advance of cam6_4_009 tageditdoc/ChangeLogsrc/physics/cam/gw_movmtn.F90src/physics/cam/clubb_intr.F90src/physics/cam/gw_drag.F90a60144a25f1ea00d50b85738cc998dcc47e3fa2e1720732708000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduCleanup changes due to code review 2024-07-11 15:18:28 -0600a60144a25f1ea00d50b85738cc998dcc47e3fa2eCleanup changes due to code revieweditsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/gw_drag.F90src/dynamics/fv3src/atmos_physc68ba6edb5831f478ccffb81b247287ff80c93ed1720732814000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate directories 2024-07-11 15:20:14 -0600c68ba6edb5831f478ccffb81b247287ff80c93edupdate directorieseditsrc/atmos_physeditsrc/dynamics/fv3parameters_tunable.F90c5fc4e56b888f2b322372097522a5695b3b1386f1720755417000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis code in adj_low_res_nu was using the ghost point when grid_type = 2. This has now been changed to not include the ghost level. This code is BIT_CHANGING. 2024-07-11 22:36:57 -0500c5fc4e56b888f2b322372097522a5695b3b1386fThis code in adj_low_res_nu was using the ghost point wheneditparameters_tunable.F90cime_config/testdefs/testlist_cam.xmltest/system/test_driver.shed9a91cc332958363c37a242e0048ff5832a382c1720796232000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd GPU tests on derecho 2024-07-12 08:57:12 -0600ed9a91cc332958363c37a242e0048ff5832a382cAdd GPU tests on derechoedittest/system/test_driver.sheditcime_config/testdefs/testlist_cam.xmlsrc/ionosphere/waccmx/edyn_phys_grid.F90be36d7b14f182fc894ab1492fdb26f8e7309d96e1720808304000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd allocate error checks modified: src/ionosphere/waccmx/edyn_phys_grid.F90 2024-07-12 12:18:24 -0600be36d7b14f182fc894ab1492fdb26f8e7309d96eadd allocate error checkseditsrc/ionosphere/waccmx/edyn_phys_grid.F90.gitmodulesb915d4059143ea3d7d4b6c5afcbc7e25ce140fde1720815755000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate submodules to cesm3_0_alpha02a 2024-07-12 16:22:35 -0400b915d4059143ea3d7d4b6c5afcbc7e25ce140fdeupdate submodules to cesm3_0_alpha02aedit.gitmodulescimecomponents/mosartccs_configcomponents/rtmsharecomponents/cdepscomponents/cmepscomponents/clmcomponents/mizuRoutecomponents/cism4f7adf33b77e072acaea715a264148b064fdbf361720816289000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate submodule directories 2024-07-12 16:31:29 -04004f7adf33b77e072acaea715a264148b064fdbf36update submodule directorieseditccs_configeditcimeeditcomponents/cmepseditcomponents/mosarteditcomponents/rtmeditcomponents/cdepseditcomponents/cismeditshareeditcomponents/clmeditcomponents/mizuRoutedoc/ChangeLog5c748def42b9d6d948e09f6f40b2f8106bb651ba1720824555000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edustart ChangeLog entry 2024-07-12 18:49:15 -04005c748def42b9d6d948e09f6f40b2f8106bb651bastart ChangeLog entryeditdoc/ChangeLoglatin_hypercube_driver_module.F90916b5a9793d042cc969aec6dabc5abbda67f21001720943555000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the SILHS code that calculates k_lh_start to work consistently with ghostless CLUBB. This commit is BIT_CHANGING. 2024-07-14 02:52:35 -0500916b5a9793d042cc969aec6dabc5abbda67f2100I am updating the SILHS code that calculates k_lh_start to workeditlatin_hypercube_driver_module.F90src/physics/cam/gw_movmtn.F90src/physics/cam/gw_drag.F90c6e636c34d0516e02f22e7892877970799ee05f51721074113000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduadditional review comments addressed 2024-07-15 14:08:33 -0600c6e636c34d0516e02f22e7892877970799ee05f5additional review comments addressededitsrc/physics/cam/gw_movmtn.F90editsrc/physics/cam/gw_drag.F90src/physics/cam/clubb_intr.F9050fe0dc8e754a64c010a6bda7253f624458711721721079079000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd comment for clubb_intr 2024-07-15 15:31:19 -060050fe0dc8e754a64c010a6bda7253f62445871172Add comment for clubb_intreditsrc/physics/cam/clubb_intr.F90doc/ChangeLog42aad5e2a490f8a9fc1ddfe37d4193e0a1320f451721084757000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-15 19:05:57 -040042aad5e2a490f8a9fc1ddfe37d4193e0a1320f45update ChangeLogeditdoc/ChangeLogdoc/ChangeLoged640164e41cdf26851319028fd419c6b686bc1d1721085481000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-15 19:18:01 -0400ed640164e41cdf26851319028fd419c6b686bc1dupdate ChangeLogeditdoc/ChangeLogcomponents/cicesrc/dynamics/fv3src/atmos_phys6625e4d2373137db79209a07af29091f79df74cc1721157616000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduupdate externals 2024-07-16 13:20:16 -06006625e4d2373137db79209a07af29091f79df74ccupdate externalseditcomponents/ciceeditsrc/atmos_physeditsrc/dynamics/fv3src/physics/cam/gw_movmtn.F90src/physics/cam/gw_drag.F90d141d8f2cf6294595a97408c35f31e65bd29e4521721161954000http://carson.math.uwm.edu/jenkins/user/juliobjuliobjuliob@ucar.eduaddressed CS and CS1 variables and outputs 2024-07-16 14:32:34 -0600d141d8f2cf6294595a97408c35f31e65bd29e452addressed CS and CS1 variables and outputseditsrc/physics/cam/gw_drag.F90editsrc/physics/cam/gw_movmtn.F90src/physics/cam/gw_movmtn.F907a3886ef134da2c3b8e78b5e39e5892a0d58ac021721169542000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange index variables to be integers 2024-07-16 16:39:02 -06007a3886ef134da2c3b8e78b5e39e5892a0d58ac02Change index variables to be integerseditsrc/physics/cam/gw_movmtn.F90stats_clubb_utilities.F90advance_clubb_core_module.F90fddad9485d30abe6c743a4be0445fdfe3a6a0a2e1721188165000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing changes to stats output for cloud_cover, rcm_in_layer, and z_cloud base owing to the gymnastics it takes to avoid the ghost point in calculations. These changes are BIT_CHANGING, but they don't change the answer. 2024-07-16 22:49:25 -0500fddad9485d30abe6c743a4be0445fdfe3a6a0a2eI am committing changes to stats output for cloud_cover, rcm_in_layer,editstats_clubb_utilities.F90editadvance_clubb_core_module.F90latin_hypercube_driver_module.F906bb6d06fa0a70a779d86161b235282f847ef604e1721242346000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThere were furhter issues found with the k_lh_start code. The code would find that sometimes, the maximum location of rcm in cloud would occur at the ghost level, k = 1, and set that level as k_lh_start for SILHS. This is undesirable for two reasons: 1) k_lh_start should be set around a legimate, "within domain" grid level; and 2) Setting k_lh_start to 1 is unachievable for the ghostless branch of the model, making a match between the master and clubb_ghost_exorcism branhes unattainable. The issue is corrected here by allowing the maxloc function to only search over "in-domain levels" for maximum cloud. The results are BIT_CHANGING. 2024-07-17 13:52:26 -05006bb6d06fa0a70a779d86161b235282f847ef604eThere were furhter issues found with the k_lh_start code.editlatin_hypercube_driver_module.F90advance_clubb_core_module.F90mixing_length.F90advance_helper_module.F908662dc283f8186f9dc900d82a63fbc46abc658511721258040000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi_zm calc (Part 3) - Moving calculations for Ri_zm out of diagnose_Lscale_from_taus (#1157) CLUBB tocket #1145 BIT_CHANGING for lscale since Ri_zm was not calculated before. 1. mixing_length.F90: - Removed unused input variables from diagnose_Lscale_from_taus: um, vm, exner, p_in_Pa, rtm, thlm, thvm, rcm, saturation_formula, l_brunt_vaisala_freq_moist, l_use_thvm_in_bv_freq, l_modify_limiters_for_cnvg_test; added ddzt_umvm_sqd as input; changed Ri_zm from out to in - Removed unused brunt_vaisala_freq_sqd variables from diagnose_Lscale_from_tau - Removed calculations for Ri_zm and ddzt_umvm_sqd - Fixed some line length issues 2. advance_helper_module.F90 - Removed unused input variables and imports - Fixed some line length issues 3. advance_clubb_core_module.F90 - Added calculations for ddzt_umvm_sqd and Ri_zm - Adjusted subroutine calls - Fixed some line length issues 2024-07-17 18:14:00 -05008662dc283f8186f9dc900d82a63fbc46abc65851Ri_zm calc (Part 3) - Moving calculations for Ri_zm out of diagnose_Lscale_from_taus (#1157)editadvance_helper_module.F90editadvance_clubb_core_module.F90editmixing_length.F90latin_hypercube_driver_module.F90fd2a66ac11b726371135f2233834e2e87562682c1721277738000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn my previous commit, I changed the domain of the maxloc commands in the computation of k_lh_start to check over the arrays from levels 2:nz. However, when that happens, the output will be offset by 1. Consider a situation where the rcm max is at level 2. By being passed 2 through nz only, maxloc will return a value of 1. I needed to add +1 to the output to rectify this issue. The results are BIT_CHANGING. 2024-07-17 23:42:18 -0500fd2a66ac11b726371135f2233834e2e87562682cIn my previous commit, I changed the domain of the maxloc commandseditlatin_hypercube_driver_module.F90precipitation_fraction.F90stats_clubb_utilities.F900df67106e4001e1eda48b4740fe1b065df06cd771721289115000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit brings the stats output from the all cases run with the master branch (using the default configuration) in bit-for-bit agreement with the stats output from all cases run with the clubb_ghost_exorcism branch. Of course, this agreement ignores the ghost level output in the zt files run with the master branch. This commit is technically BIT_CHANGING because it alters a few stats for a couple cases, but does not change results. 2024-07-18 02:51:55 -05000df67106e4001e1eda48b4740fe1b065df06cd77This commit brings the stats output from the all cases run witheditprecipitation_fraction.F90editstats_clubb_utilities.F90src/chemistry/modal_aero/aero_model.F90src/chemistry/aerosol/aero_deposition_cam.F90src/chemistry/aerosol/modal_aerosol_properties_mod.F904b879d0b38d8dd002cf74e32768d9fe20eff5a391721319754000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduUse CAM4 BAM dust sizes; pass in aero_props from aero_model; misc cleanup modified: src/chemistry/aerosol/aero_deposition_cam.F90 modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90 modified: src/chemistry/modal_aero/aero_model.F90 2024-07-18 10:22:34 -06004b879d0b38d8dd002cf74e32768d9fe20eff5a39Use CAM4 BAM dust sizes; pass in aero_props from aero_model; misc cleanupeditsrc/chemistry/modal_aero/aero_model.F90editsrc/chemistry/aerosol/aero_deposition_cam.F90editsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90doc/ChangeLog515890919803dff37ca0111de61d718fcdf530e71721321487000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduFinal ChangeLog for cam6_4_010 2024-07-18 10:51:27 -0600515890919803dff37ca0111de61d718fcdf530e7Final ChangeLog for cam6_4_010editdoc/ChangeLogcime_config/config_compsets.xmlda47c9c5466416efcfe27fe4ce1afd8f2cc750991721324571000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChange CAM7 runs to use CLM60 2024-07-18 11:42:51 -0600da47c9c5466416efcfe27fe4ce1afd8f2cc75099Change CAM7 runs to use CLM60editcime_config/config_compsets.xmlcime_config/testdefs/testlist_cam.xml8c94dae1476e28a2e47ede304d8ea10bc7d95c421721337522000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd FHIST_BDRD test to prealpha 2024-07-18 15:18:42 -06008c94dae1476e28a2e47ede304d8ea10bc7d95c42Add FHIST_BDRD test to prealphaeditcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testlist_cam.xmleee17cd9cf9a0b60c53a5ab4d61f1194b2bcd42a1721340684000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRevert back testlist 2024-07-18 16:11:24 -0600eee17cd9cf9a0b60c53a5ab4d61f1194b2bcd42aRevert back testlisteditcime_config/testdefs/testlist_cam.xmlsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90fbca9ea514749b38800c88e4e3b8dd701a9fc74b1721340909000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduimprove checks on number and mass fluxes to avoid divide by zero modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90 2024-07-18 16:15:09 -0600fbca9ea514749b38800c88e4e3b8dd701a9fc74bimprove checks on number and mass fluxes to avoid divide by zeroeditsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90doc/ChangeLogf5806eab8a6328b11f0186feffc983a8cb1347061721342812000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_4_011 2024-07-18 16:46:52 -0600f5806eab8a6328b11f0186feffc983a8cb134706ChangeLog for cam6_4_011editdoc/ChangeLogpdf_closure_module.F903e891b5d456b4ea869955e73e012cdd21813c1d91721347695000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting a change that will initialize this set of variables under all circumstances. This change does not affect output except when the New Hybrid PDF is used. In the case of the New Hybrid PDF, the variables F_rt, F_thl, F_rt_min, F_rt_max, F_thl_min, and F_thl_max were never initialized and never set (they are not part of the New Hybrid PDF -- only in the original New PDF), resulting NaN values being output to stat files. 2024-07-18 19:08:15 -05003e891b5d456b4ea869955e73e012cdd21813c1d9Committing a change that will initialize this set of variableseditpdf_closure_module.F90src/atmos_physe8bb66947859fff2b757b5e98bb957cd4f7c687b1721399179000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduadd src/atmos_phys 2024-07-19 08:26:19 -0600e8bb66947859fff2b757b5e98bb957cd4f7c687badd src/atmos_physeditsrc/atmos_physcime_config/config_compsets.xmlfddd3125cb55497b914c2c343c0363ed452c52cd1721406582000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduuse CLM60 in the new FCts4MTHIST compset 2024-07-19 10:29:42 -0600fddd3125cb55497b914c2c343c0363ed452c52cduse CLM60 in the new FCts4MTHIST compseteditcime_config/config_compsets.xmldoc/ChangeLog0c65f23950ce9e854efe728590eafd8408b0233c1721410906000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-07-19 11:41:46 -06000c65f23950ce9e854efe728590eafd8408b0233cChangeLog drafteditdoc/ChangeLogadvance_xp2_xpyp_module.F9023f82fdc538b5a645dba8762085bfa621791cf471721419124000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking a change to the l_C2_cloud_frac option with advance_xp2_xpyp. Cloud fraction needed to be interpolated to momentum levels for proper use in the code. Since this code change does not change CLUBB's default configuration, results are bit-for-bit for the default configuration. 2024-07-19 14:58:44 -050023f82fdc538b5a645dba8762085bfa621791cf47Making a change to the l_C2_cloud_frac option with advance_xp2_xpyp.editadvance_xp2_xpyp_module.F90advance_clubb_core_module.F90clubb_api_module.F909109926fff1ccf00b6495ec70ae57350d85a32ce1721424813000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug. qclvar copying is handled by the api, but we were deleting it with an unstructured data statement. I added this due as a fix before thinking qclvar was a local variable, which happened because I mixed up the CLUBB_CAM and CLUBBND_CAM flags. https://github.com/larson-group/cam/issues/175 2024-07-19 15:33:33 -06009109926fff1ccf00b6495ec70ae57350d85a32ceFixing bug. qclvar copying is handled by the api, but we were deleting it with an unstructured data statement. I added this due as a fix before thinking qclvar was a local variable, which happened because I mixed up the CLUBB_CAM and CLUBBND_CAM flags. https://github.com/larson-group/cam/issues/175editadvance_clubb_core_module.F90editclubb_api_module.F90doc/ChangeLoga89775947c5e2d92b5de6c9b7adcaf62d8f5fddf1721445137000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-07-19 21:12:17 -0600a89775947c5e2d92b5de6c9b7adcaf62d8f5fddfChangeLog updateeditdoc/ChangeLogdoc/ChangeLog32333a276d8b71bcc7b6e567fc831ba0978da8c81721519752000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-07-20 17:55:52 -060032333a276d8b71bcc7b6e567fc831ba0978da8c8ChangeLog drafteditdoc/ChangeLogdoc/ChangeLogebe9e8fd8e86d651ee900aa7b8872e92b289012c1721603443000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-07-21 17:10:43 -0600ebe9e8fd8e86d651ee900aa7b8872e92b289012cChangeLog updateeditdoc/ChangeLogdoc/ChangeLogc8ab8c8f0281f8ce6cb09c9293603d6f417ba9ca1721657735000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-07-22 08:15:35 -0600c8ab8c8f0281f8ce6cb09c9293603d6f417ba9caChangeLog drafteditdoc/ChangeLogdoc/ChangeLog28e55c37e32f3996ffc782e77c6ec4e9913a3a771721690756000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-07-22 17:25:56 -060028e55c37e32f3996ffc782e77c6ec4e9913a3a77ChangeLog updateeditdoc/ChangeLogsrc/control/cam_history.F90doc/ChangeLogde6fff912dcb19a9c980dba206435289ef459ac61721743326000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edurevert #1043; update ChangeLog 2024-07-23 10:02:06 -0400de6fff912dcb19a9c980dba206435289ef459ac6revert #1043; update ChangeLogeditsrc/control/cam_history.F90editdoc/ChangeLogdoc/ChangeLog9f5bd87a9901feef3a394b8962e10f724b2716c41721760256000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-23 14:44:16 -04009f5bd87a9901feef3a394b8962e10f724b2716c4update ChangeLogeditdoc/ChangeLogsrc/chemistry/modal_aero/modal_aero_convproc.F907a83d6b7b9ba92c70fc3bb702dff56bb41888ea71721778763000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edudz fix in convproc modified: src/chemistry/modal_aero/modal_aero_convproc.F90 2024-07-23 17:52:43 -06007a83d6b7b9ba92c70fc3bb702dff56bb41888ea7dz fix in convproceditsrc/chemistry/modal_aero/modal_aero_convproc.F90src/physics/rrtmgp/rrtmgp_inputs.F90src/physics/rrtmgp/radiation.F90c230fa99196394f89f545a3a775f72fa9fea83ad1721827812000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edumods to RRTMGP for MT configs 2024-07-24 09:30:12 -0400c230fa99196394f89f545a3a775f72fa9fea83admods to RRTMGP for MT configseditsrc/physics/rrtmgp/rrtmgp_inputs.F90editsrc/physics/rrtmgp/radiation.F90.gitmodulesdoc/ChangeLog622f957d9bc46046195615c6be6b10c24f36daec1721831584000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate HEMCO in .gitmodules; start ChangeLog entry 2024-07-24 10:33:04 -0400622f957d9bc46046195615c6be6b10c24f36daecupdate HEMCO in .gitmodules; start ChangeLog entryedit.gitmoduleseditdoc/ChangeLogdoc/ChangeLog353e37260c671d018e080d8372d81e83a44003fa1721848363000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-24 15:12:43 -0400353e37260c671d018e080d8372d81e83a44003faupdate ChangeLogeditdoc/ChangeLogdoc/ChangeLoge8e7b085133b6ad534e5dbd09e7df7f2c2a5932c1721926614000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-25 12:56:54 -0400e8e7b085133b6ad534e5dbd09e7df7f2c2a5932cupdate ChangeLogeditdoc/ChangeLog.lib/git-fleximod/pyproject.toml.lib/git-fleximod/tbump.toml.lib/git-fleximod/git_fleximod/git_fleximod.py.lib/git-fleximod/git_fleximod/submodule.py.lib/git-fleximod/git_fleximod/cli.py.github/workflows/fleximod_test.yaml376de0ed48a5ea9a55467e9d52e4e0e5db67a4a11721935557000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho3.hsn.de.hpc.ucar.eduupdate git-fleximod to 8.4 and add fleximod-test workflow 2024-07-25 13:25:57 -0600376de0ed48a5ea9a55467e9d52e4e0e5db67a4a1update git-fleximod to 8.4 and add fleximod-test workflowedit.lib/git-fleximod/git_fleximod/cli.pyedit.lib/git-fleximod/tbump.tomledit.lib/git-fleximod/git_fleximod/git_fleximod.pyedit.lib/git-fleximod/git_fleximod/submodule.pyedit.lib/git-fleximod/pyproject.tomladd.github/workflows/fleximod_test.yaml.gitmodules995899cb9c4461e29a563d8e0401d2dbf2b4f5b11721935972000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@derecho3.hsn.de.hpc.ucar.edufix cice url in .gitmodules 2024-07-25 13:32:52 -0600995899cb9c4461e29a563d8e0401d2dbf2b4f5b1fix cice url in .gitmodulesedit.gitmodulessrc/dynamics/fv3src/physics/cam/physpkg.F90components/cmepscomponents/cicesrc/physics/cam7/physpkg.F9031e33fe758eee65f524a7a23cc243331b20e561b1721939601000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduremove variable initialization, not necessary for bfb 2024-07-25 14:33:21 -060031e33fe758eee65f524a7a23cc243331b20e561bremove variable initialization, not necessary for bfbeditsrc/physics/cam7/physpkg.F90editcomponents/ciceeditsrc/physics/cam/physpkg.F90editsrc/dynamics/fv3editcomponents/cmeps.gitmodulessrc/atmos_physb0b79b29fb2d062339615aa731216e125689ecff1721945896000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate gitmodules for new atmospheric_physics tag 2024-07-25 16:18:16 -0600b0b79b29fb2d062339615aa731216e125689ecffupdate gitmodules for new atmospheric_physics tagedit.gitmoduleseditsrc/atmos_physsrc/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F9055db0bbf7e6f5e0a20d745f147d1dffda74349671722278277000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduAddressing first review comments 2024-07-29 12:37:57 -060055db0bbf7e6f5e0a20d745f147d1dffda7434967Addressing first review commentseditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/subcol_SILHS.F90bld/configuredoc/ChangeLogbld/namelist_files/namelist_defaults_cam.xml2ea3531754de29f337bed4ac0116c514b96060351722279719000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.edufix #1087 and #1103 2024-07-29 15:01:59 -04002ea3531754de29f337bed4ac0116c514b9606035fix #1087 and #1103editbld/namelist_files/namelist_defaults_cam.xmleditbld/configureeditdoc/ChangeLogsrc/physics/cam/clubb_intr.F90afde46e8837d446e9b98b2cb23d05c8cc074f8051722282473000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduA few more review comments 2024-07-29 13:47:53 -0600afde46e8837d446e9b98b2cb23d05c8cc074f805A few more review commentseditsrc/physics/cam/clubb_intr.F90src/physics/cam/clubb_intr.F90b4df86bf3963f85e89470fa89ee82e34280972e91722291290000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduBug fixes 2024-07-29 16:14:50 -0600b4df86bf3963f85e89470fa89ee82e34280972e9Bug fixeseditsrc/physics/cam/clubb_intr.F90doc/ChangeLog5a332002485d4fa7325940d14385a3143080ddc81722348923000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-07-30 10:15:23 -04005a332002485d4fa7325940d14385a3143080ddc8update ChangeLogeditdoc/ChangeLogdoc/ChangeLog_templatea251e59f94f1f9a8e3eded064a59c5a2698c7a621722370472000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog template to include nvhpc tests on Derecho 2024-07-30 14:14:32 -0600a251e59f94f1f9a8e3eded064a59c5a2698c7a62Update ChangeLog template to include nvhpc tests on Derechoeditdoc/ChangeLog_templatedoc/ChangeLog0d85504f000e73cc3552577beb07e86eb1d847351722384619000http://carson.math.uwm.edu/jenkins/user/courtneypcourtneypcourtneyp@izumi.cgd.ucar.eduadd changelog 2024-07-30 18:10:19 -06000d85504f000e73cc3552577beb07e86eb1d84735add changelogeditdoc/ChangeLogmono_flux_limiter.F90c304d15ab5483f1e7f0b0de1b9f01f06fb7d09b91722452248000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing GPU bug. There is a vertical dependency with wpxp. This is what was breaking the ECT test, see larson-group/cam#175 2024-07-31 13:57:28 -0500c304d15ab5483f1e7f0b0de1b9f01f06fb7d09b9Fixing GPU bug. There is a vertical dependency with wpxp. This is what was breaking the ECT test, see larson-group/cam#175editmono_flux_limiter.F90advance_clubb_core_module.F90pdf_closure_module.F9032a74a3cbba967b1b3558708ca78d7929dee6d601722455629000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bugs that are only caught when not outputting w_[up/down]_in_cloud stats or if l_host_applies_sfc_fluxes=.true. The l_host_applies_sfc_fluxes=.true. isn't testable (at least not in clubb_standalone), and I just caught that visually. The cloudy_updraft_frac and cloudy_downdraft_frac fields not being set were only noticable in cam, because we always run with iw_up_in_cloud>0 and iw_down_in_cloud>0 to output stats. 2024-07-31 14:53:49 -050032a74a3cbba967b1b3558708ca78d7929dee6d60Fixing bugs that are only caught when not outputting w_[up/down]_in_cloud stats or if l_host_applies_sfc_fluxes=.true. The l_host_applies_sfc_fluxes=.true. isn't testable (at least not in clubb_standalone), and I just caught that visually. The cloudy_updraft_frac and cloudy_downdraft_frac fields not being set were only noticable in cam, because we always run with iw_up_in_cloud>0 and iw_down_in_cloud>0 to output stats.editadvance_clubb_core_module.F90editpdf_closure_module.F90src/physics/cam/clubb_intr.F90b52730b6b89c48ebbde38027704ef4b613384ca21722458419000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduBug fix for runs where CLUBB_SGS is not defined 2024-07-31 14:40:19 -0600b52730b6b89c48ebbde38027704ef4b613384ca2Bug fix for runs where CLUBB_SGS is not definededitsrc/physics/cam/clubb_intr.F90clubb_api_module.F9055c6276fbb2a1eb3db01e7b71a7909c22b694d3d1722465051000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test. 2024-07-31 17:30:51 -050055c6276fbb2a1eb3db01e7b71a7909c22b694d3dMoving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test.editclubb_api_module.F90bld/namelist_files/namelist_definition.xmlsrc/cpl/nuopc/atm_stream_ndep.F90src/cpl/nuopc/atm_import_export.F90bld/build-namelistdoc/ChangeLoge0beb4e2323ffc972a74050601b34277df8b53e31722536209000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove ndep stream from aquaplanet and simple model runs 2024-08-01 14:16:49 -0400e0beb4e2323ffc972a74050601b34277df8b53e3remove ndep stream from aquaplanet and simple model runseditbld/namelist_files/namelist_definition.xmleditsrc/cpl/nuopc/atm_stream_ndep.F90editbld/build-namelisteditdoc/ChangeLogeditsrc/cpl/nuopc/atm_import_export.F90bld/namelist_files/use_cases/waccm_sc_2000_cam6.xmlbld/namelist_files/use_cases/waccm_sc_2010_cam6.xml2ae76b01786f931fbb6ca456e0a8f6808e71a7191722899777000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.educycle forcings over appropriate year modified: bld/namelist_files/use_cases/waccm_sc_2000_cam6.xml modified: bld/namelist_files/use_cases/waccm_sc_2010_cam6.xml 2024-08-05 17:16:17 -06002ae76b01786f931fbb6ca456e0a8f6808e71a719cycle forcings over appropriate yeareditbld/namelist_files/use_cases/waccm_sc_2000_cam6.xmleditbld/namelist_files/use_cases/waccm_sc_2010_cam6.xmlsrc/control/scamMod.F90bld/namelist_files/namelist_defaults_cam.xmlsrc/dynamics/se/advect_tend.F90dcc636d33ab3d4e0ba06425df2f07dbadebcbc6f1722915444000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comPR updates: comments,typo, and replace hard coded length with shr_kind_cl 2024-08-05 21:37:24 -0600dcc636d33ab3d4e0ba06425df2f07dbadebcbc6fPR updates: comments,typo, and replace hard coded length with shr_kind_cleditsrc/dynamics/se/advect_tend.F90editsrc/control/scamMod.F90editbld/namelist_files/namelist_defaults_cam.xmlsrc/chemistry/mozart/mo_drydep.F90src/chemistry/mozart/chemistry.F90bld/build-namelistdoc/ChangeLog73d5dedba9117f6886d88741a09ce3f848b254501722985111000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduremove drydep_srf_file for aquap runs on unstructured grids 2024-08-06 18:58:31 -040073d5dedba9117f6886d88741a09ce3f848b25450remove drydep_srf_file for aquap runs on unstructured gridseditsrc/chemistry/mozart/chemistry.F90editbld/build-namelisteditsrc/chemistry/mozart/mo_drydep.F90editdoc/ChangeLogsrc/chemistry/modal_aero/aero_model.F90bbfc5761da235b0e7d70c20ab0779252dfdd21081723134368000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.edutweak a comment modified: src/chemistry/modal_aero/aero_model.F90 2024-08-08 10:26:08 -0600bbfc5761da235b0e7d70c20ab0779252dfdd2108tweak a commenteditsrc/chemistry/modal_aero/aero_model.F90advance_wp2_wp3_module.F90advance_xm_wpxp_module.F90d135c3d79b104de8ec0d611cf9854c542ee169191723145344000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded zt2zm2zt-smoothing to remove noise in MPACE_B winds (#1161) BIT_CHANGING In order to remove noise in the wind fields in MPACE_B, we added some smoothing. * Added `zt2zm2zt`-smoothing to `diagnose_upxp` calls in `advance_xm_wpxp` * Added `zm2zt2zm`-smoothing to `wp2` and `em` vars fed into `wp3_term_pr_turb_rhs` in `advance_wp2_wp3` * Changed C_wp2_splat to 0.00 in default tunable_parameters.in 2024-08-08 14:29:04 -0500d135c3d79b104de8ec0d611cf9854c542ee16919Added zt2zm2zt-smoothing to remove noise in MPACE_B winds (#1161)editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90parameters_model.F909153bbbc08436d993c2bb238095026e750059b721723145363000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMoving PosInf to clubb_model_settings.F90 2024-08-08 14:29:23 -05009153bbbc08436d993c2bb238095026e750059b72Moving PosInf to clubb_model_settings.F90editparameters_model.F90.gitmodulescomponents/cdepssrc/physics/clubb2abc5a0164cab1476a79554b8ea59dfad74c179d1723171493000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate to new new new CLUBB external (_gpufix_PosInf) and new CDEPS 2024-08-08 20:44:53 -06002abc5a0164cab1476a79554b8ea59dfad74c179dUpdate to new new new CLUBB external (_gpufix_PosInf) and new CDEPSeditcomponents/cdepsedit.gitmoduleseditsrc/physics/clubb.gitmodulescomponents/cdeps8e05c34e5bb2c3d1b9e0eb87f9a697d16e4123911723228385000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate to newest CDEPS tag cdeps1.0.45 2024-08-09 12:33:05 -06008e05c34e5bb2c3d1b9e0eb87f9a697d16e412391Update to newest CDEPS tag cdeps1.0.45editcomponents/cdepsedit.gitmodulesdoc/ChangeLog86ba7de6bff6fbb966e8f50da6cec1e8d9d6a8ed1723247561000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate ChangeLog with Derecho test results before machine goes down 2024-08-09 17:52:41 -060086ba7de6bff6fbb966e8f50da6cec1e8d9d6a8edUpdate ChangeLog with Derecho test results before machine goes downeditdoc/ChangeLogdoc/ChangeLoged684d2c73f6db60c6edf664ae2fad41ffd0578d1723503025000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduFinal updates 2024-08-12 16:50:25 -0600ed684d2c73f6db60c6edf664ae2fad41ffd0578dFinal updateseditdoc/ChangeLogtest/system/archive_baseline.sh44952ccdec9b72552cdacf06e15f969d14db1bf81723567673000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd compiler name to derecho baseline directories 2024-08-13 10:47:53 -060044952ccdec9b72552cdacf06e15f969d14db1bf8Add compiler name to derecho baseline directoriesedittest/system/archive_baseline.shdoc/ChangeLogf675c4098ccd13e879db2c2f3d54ef0b7c7e50521723574620000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-08-13 12:43:40 -0600f675c4098ccd13e879db2c2f3d54ef0b7c7e5052ChangeLog drafteditdoc/ChangeLogdoc/ChangeLogd434571b56d1f49f69bf3148b8494d6fdf4884871723643369000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-08-14 07:49:29 -0600d434571b56d1f49f69bf3148b8494d6fdf488487ChangeLog updateeditdoc/ChangeLog.gitmodulessrc/atmos_physsrc/physics/cam/zm_conv_intr.F90f5c1ab0ec6d9857a6466d6a7fcac90029f53e4c81723649933000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove 0.5*timestep logic from call to zm 2024-08-14 09:38:53 -0600f5c1ab0ec6d9857a6466d6a7fcac90029f53e4c8Remove 0.5*timestep logic from call to zmeditsrc/atmos_physedit.gitmoduleseditsrc/physics/cam/zm_conv_intr.F90.gitmodules0a09ac08fc1f9b6841800de02be53e988a04be9f1723762294000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate atmos_phys tag 2024-08-15 16:51:34 -06000a09ac08fc1f9b6841800de02be53e988a04be9fUpdate atmos_phys tagedit.gitmoduleslatin_hypercube_driver_module.F900c35bdb2e850e41bab982505438cc7b575c3cde41723785812000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNightly clubb plots (#1167) * Making step to plot output, copy to pub folder, then create an index.html file to display all plots in that folder. * Small tweaks * Small fixes in pyplotgen. * Copy needs -r * Using jenkins env variables and switching to scp/ssh commands to allow plots to be generated and created on any machine. * Adding quotes are env variable usage * Pyplotgen addition to create a git_info file containing branch and commit name. * Script should handle the pyplotgen _generated_on_... suffix. * Making script only run arm again during testing. * More robust way to get git branch in pyplotgen. * Testing single quotes * Making all cases run again. * Undoing most pyplotgen changes. Making create_plot_list script general and take in a directory. Returning short run test mode. * Update to create git_info line * Making all cases run again and adding plot support for ifort. * Adding plot step to nvhpc gpu diffness test. * Fixing error * Reverting diffness script, making new one specifically for plotting. * Changes to allow plotting of previous output. * Setting O0 for testing * Branch folder restructure. * Making tests run all cases again and update master output only. * Clean up and naming changes. * Addin -O2 back. * Small update to pyplotgen to make title reflect name of output specified in command. * This cuda call doesn't work with the subscript for some reason. * Making only priority cases run for GPU plot test and preventin it from running on carson 2024-08-16 00:23:32 -05000c35bdb2e850e41bab982505438cc7b575c3cde4Nightly clubb plots (#1167)editlatin_hypercube_driver_module.F90src/atmos_physcdf72282e2941d90e7f1fbec8bcae30f0dea17fc1723821340000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduUpdate atmos_phys tag 2024-08-16 09:15:40 -0600cdf72282e2941d90e7f1fbec8bcae30f0dea17fcUpdate atmos_phys tageditsrc/atmos_physdoc/ChangeLogtest/system/test_driver.shd36b4ed63b06a460b2a2208c88934f702bbad2aa1723860799000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate ChangeLog and add back # to first line of test_driver.sh 2024-08-16 20:13:19 -0600d36b4ed63b06a460b2a2208c88934f702bbad2aaupdate ChangeLog and add back # to first line of test_driver.sheditdoc/ChangeLogedittest/system/test_driver.shdoc/ChangeLogcf34bea6c90051aec5046dba3e27c0fef800bd901723865144000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comfix date of ChangeLog entry 2024-08-16 21:25:44 -0600cf34bea6c90051aec5046dba3e27c0fef800bd90fix date of ChangeLog entryeditdoc/ChangeLogjenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilerun_scripts/set_up_cam_coarse_res.py97873ca72299bb6101b7075357bc1aa31d0533911723941196000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNightly clubb plots (#176) * Adding plot capability. * Rico doesn't work? * Adding robustness * Fixing path * Adding force remove of clubb to prevent folder exists errors. * Update to file structure. * Name to test to indicate it's one of the plotting tests. 2024-08-17 19:33:16 -050097873ca72299bb6101b7075357bc1aa31d053391Nightly clubb plots (#176)editrun_scripts/set_up_cam_coarse_res.pyeditjenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfileaddjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilefad89b08dbc32617bab9778b97b2ce21f98d31c51723941736000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSlight cleanup to folder and changing name of jenkins test in script. 2024-08-17 19:42:16 -0500fad89b08dbc32617bab9778b97b2ce21f98d31c5Slight cleanup to folder and changing name of jenkins test in script.deletejenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfile3afc5592dd2cd8fa7886907a2aa8e07af4223d421723943320000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix. 2024-08-17 20:08:40 -05003afc5592dd2cd8fa7886907a2aa8e07af4223d42Small bug fix.editjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfileaafc53081088d5a5a9462f645147f548cd4b33c61723954949000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating script name 2024-08-17 23:22:29 -0500aafc53081088d5a5a9462f645147f548cd4b33c6Updating script nameeditjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfile.github/scripts/branch_pr_issue_closer.pye381582d7ff0d2c7ac2dcea3b4de339c0d8fc8161724088563000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduRemove project checks from issue-closing script. 2024-08-19 11:29:23 -0600e381582d7ff0d2c7ac2dcea3b4de339c0d8fc816Remove project checks from issue-closing script.edit.github/scripts/branch_pr_issue_closer.py.github/scripts/branch_pr_issue_closer.py2b900aff1c0593dfb6f950ed5147aa29b95646491724096628000http://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumenusbaume@ucar.eduFix comment to remove CAMDEN reference. 2024-08-19 13:43:48 -06002b900aff1c0593dfb6f950ed5147aa29b9564649Fix comment to remove CAMDEN reference.edit.github/scripts/branch_pr_issue_closer.pysrc/physics/spcam/crmclouds_camaerosols.F90a642e33dcb20673abbf4f4c71dd6c449b5591e431724111744000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduRemove dt from call to ZM convtran 2024-08-19 17:55:44 -0600a642e33dcb20673abbf4f4c71dd6c449b5591e43Remove dt from call to ZM convtraneditsrc/physics/spcam/crmclouds_camaerosols.F90doc/ChangeLog3335f4bab13b9eb64e08ba72a43c2b71a7046c881724111980000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduChangeLog for cam6_4_022 2024-08-19 17:59:40 -06003335f4bab13b9eb64e08ba72a43c2b71a7046c88ChangeLog for cam6_4_022editdoc/ChangeLogclip_explicit.F90advance_xm_wpxp_module.F90clubb_api_module.F90grid_class.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90calc_pressure.F90precipitation_fraction.F90diffusion.F90numerical_check.F90pos_definite_module.F90parameters_tunable.F90hydromet_pdf_parameter_module.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_clubb_core_module.F90advance_xp3_module.F90mean_adv.F90fill_holes.F90sigma_sqd_w_module.F90stats_type.F90stats_clubb_utilities.F90sfc_varnce_module.F9090c974765822217b0693858a0ac0f115c5b964a21724333265000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb ghost exorcism (#1159) * I am adding grid_class_new.F90 to the code as a copy of grid_class.F90. The first step toward removing the ghost level from the model is to modify the grid file. Having a second grid file in play will allow functions and subroutines that are undergoing modification earlier in this process to use the new file, while functions and subroutines that have not yet been modified will continue to use the old grid file until they can be modified. At the end of this process, the old grid file will be able to be removed and grid_class_new.F90 will simply be able to be renamed grid_class.F90 at that point. In this commit, I have altered the schematic and the comments at the very start of the module to be "ghostless". * Updated grid_class for the changes to the grid interpolation weighting functions for the new "ghostless" ascending grid. * Committing some updates to the new grid class file for ghostless ascending. * Updating to match recent changes made to grid_class.F90. * I finished the removal of the ghost level from the entirety of the new grid_class file. This standalone file compiles successfully. * Removing the sources of compiler warnings in grid_class_new.F90 (these were carried over from grid_class.F90). * Committing progress in advance_wp2_wp3_module.F90 with regards to ghostless grid. * I am committing the updated version of grid_class_new.F90 that allows all cases to run, regardless of grid_type. * Fixed a bug in grid_class_new.F90 When grid_type = 2, the calculations of the indices begin_height and end_height are based on the thermodynamic level grids. Those grid indices should be used in the call to setup_grid_heights, where the array of thermodynamic_heights, from index begin_height to index end_height, should become gr%zt. When grid_type - 3, the calculations of the indices begin_height and end_height are based on the momentum grid levels. Either way, momentum_heights and thermodynamic_heights should both have the array from begin_height to end_height passed in. When grid_type = 2, only the thermodynamic height array is relevant in the setup. When grid_type = 3, only the momentum height array is relevant in the setup. * For thermodynamic_height, 1:nzmax-1 is the entire array, but I entered this for a clarification, especially considering the following check block. * Updated grid_class_new to better handle the begin_height and end_height indices. * Some modifications to advance_wp2_wp3 * Committed some temporary code. * committed some temporary changes to clubb_api_module. * Making a bunch of commits to clubb_driver that are mainly temporary for interface and printing purposes. * Deghosted another subroutine. * Updated wp2_term_ta_lhs to use the new gridding. * De-ghosting wp2_terms_ac_pr2_lhs * De-ghosted wp2_term_pr3_rhs * Deghosting wp3_term_tp_lhs. * Deghosted wp3_terms_ac_pr2_lhs * Updated the wp3_term_ta_ADG1_lhs subroutine to use boundary conditions where wp3 (at the top level and bottom momentum levels of the model) is assumed to have a value of 0. * For single loop vectors, removing the "collapse(2)" from the acc statements. This commit is not bit changing, but the previous commit to this branch was BIT_CHANGING:902d6caed8a4533f59f4165106276959b4f90895 * I updated wp3_term_ta_explicit_rhs for the ghostless grid. When l_explicit_turbulent_adv_wp3 is turned on, the results from this branch exactly match those found on the master branch. * Updating diffusion_zm_lhs for "Ghostless" gridding. * Fixed a typo in the comments that was introduced in the previous commit. * Updated for "ghostless" diffusion. * With wp3 now being set to a fixed-point boundary condition value of 0 at the current thermodynamic level 1 (first t-lev above the surface), it is not necessary to loop over level 1 within the code for each wp3 term. Also contains code to enforce a fixed-point boundary condition of wp3=0 at the first thermodynamic level above the surface. * Restoring diffusion to the way it should be for the exorcised ghost grid prior to the most recent master merge. Lines for the ghost point were accidentally added during the merge commit. * Updated code to correct wp3_bp1 and wp3_pr2 budget terms so that they still match bit-for-bit what is found in the master branch. * Updating term_ma_zm_lhs for ghostless gridding. Results are bit-for-bit identical. * After debugging, I am now committing the ghostless version of term_ma_zt_lhs. * Updating the clubb_ghost_exorcism branch for ghostless wp23 rhs, lhs, and solve. This revision runs; however, there are still some issues tracking down the source of problems in maintaining bit-for-bit results. * Updated to maintain bit-for-bitness with the master code. * Finished exorcising the ghost from advance_wp2_wp3_module.F90. * Small openacc changes to fix GPU runs * Adjusting new hybrid PDF code to continue to match the master branch bit-for-bit while construction continues. * Committing the first portion of a nomenclature change where the number of momentum vertical grid levels is denoted as nzm rather than nz. * Changing the notation of the number of grid levels on the momentum grid, previously nz, to nzm in some files. * Changed some comments and a little bit of code in the new grid_class file to provide a better description. * Updated sigma_sqd_w_module for ghostless gridding. * I added the new "ghostless" discretization to turbulent_adv_pdf.F90, and also appropriately altered the points in the code where the turbulent advection subroutines are called from in advance_xm_wpxp_module.F90 and advance_xp2_xpyp_module.F90. The code produced bit-for-bit results in regards to the standard configuration, the new hybrid PDF configuration, and also for the configuration with the godunov flags turned on. * Altered many of the lower-level subroutines in advance_xp2_xpyp_module.F90 for ghostless gridding. * Upgraded subroutine calc_xp2_xpyp_ta_terms for ghostless discretization. This should alter the results when the new_hybrid PDF is used in conjunction with upwind discretization, but it doesn't alter the results for anything else. * Completed making advance_xp2_xpyp ghostless. * Completed the de-ghosting of advance_windm_edsclrm. Results are BIT_CHANGING because the ghost level was interacting with the results. * The call to calc_xpwp from advance_microphys was not supposed to be updated yet. It wound up being sort of "partially updated" for ghostless gridding, which was a bug that led to some diagnostic output fields not being bit-for-bit. In this commit, I returned it to its prior form so that zm output files once again retain bit-for-bit status between this branch and the master. * The ghost point interface statements after the return from advance_windm_edsclrm needed to be encased in the same conditional statements that the calculations occurred in with the aforementioned subroutine. This change fixes a bug where a handful of cases had results that were not bit-for-bit from revisions before this code was added. * Fixed bug where the wrong stats were being recorded to the stats for coef_wpthlp2_implicit, etc. * I am committing a bug fix to the implicit surface flux calculation in the eddy-diffusivity wind code (which is used when l_predict_upwp_vpwp is turned off). I am also committing some temporary ghost point interface stats code within advance_windm_edsclrm. * I updated the diagrams in advance_windm_edsclrm to reflect the new ghostless grid. * I improved the description section of advance_windm_edsclrm. * Made numerous low-level subroutines ghostless within advance_xm_wpxp_module.F90. Maintained bit-for-bit results with the master branch. * I am updating the xm wpxp code that calls the wpxp turbulent advection term based on your PDF and option for ghostless gridding. * Updating some of the lower-level functions of the monotonic flux limiter for ghostless gridding. * I have updated the monotonic flux limiter for ghostless gridding! * A couple of redundant declarations were brought in on the last merge. * Committing further updates to ghostless gridding, including: 1) Further modifications to advance_xm_wpxp, which includes branching out in Brunt-Vaisala frequency calculations in advance_helper; 2) Update in calculating the initial pressure; and 3) updating grid class new to use the same "value drop down" in the zt2zm function and "derivative drop down" in the ddzt function that are now used in grid_class in the master. Results are bit-for-bit identical with the master. * Updated xm_wpxp_lhs for ghostless gridding. * Made xm_wpxp_rhs ghostless. * Updated xm_wpxp_solve for ghostless gridding! * Updating pos_definite_module.F90 for ghostless gridding. * Updated vertical hole filling and xm clipping and stats for ghost point removal. Results are still bit-for-bit with the master branch. * Updated advance_xm_wpxp to remove the ghost point. * Updating some zt stats to use a value of 0 for the "ghost" level. * Updated subroutine compute_mixing_length for ghostless gridding. * Removing the ghost point from calculate_Lscale_directly * Added a "ghostbuster" option (-g) in the run_bindiff_all.py python script that omits the "ghost" level from the comparison for _zt.nc output files when envoked. * I de-ghosted the l_diagnose_Lscale_from_tau code. * Fixing a couple bugs with the merge. * De-ghosted a couple of subroutines with advance_helper_module.F90. * Code wasn't compiling because of too many characters on one line. * De-ghosted precipitation_fraction.F90. * De-ghosted more code, including sfc_varnce_module.F90. * De-ghosted numerical_check.F90 * Committing a chunk of code that effectively "finishes off" the deghosting of CLUBB core, although results aren't there yet and it still needs more debugging. * This corrects the bug where an error would occur when trying to compare a run with a ghost level to a run without a ghost level. * Commiting some necessary ghost point removal code. * Updated the calculations of rcm_in_layer and cloud_cover for ghostless gridding. * I removed the ghost point from all the files within the Benchmark_cases directory. * I am committing code that removes the ghost level from setup_clubb_pdf_params and most of the collection of CLUBB's microphysics schemes. * Fixing a bug in SILHS where sample point values were being overwritten at level 1. * I fixed some bugs in the ghostless version of the Morrison microphysics driver. * I fixed some array declaration mismatches in silhs_api_module.F90. * I have deghosted the call to the code that calculates microphysics tendencies and everything below it. * Performed a de-ghosting, as well as an improvement that ensures that mean sedimentation is always conservative (excluding the amount of hydrometeor that leaves the domain at the surface), to all subroutines at the level of microphys_lhs and lower in advance_microphys_module.F90. This includes all process-related subroutines like those that govern sedimentation or turbulent sedimentation. Gee, how is it possible that such are large amount of work gets done when there's no office. It must have been magic elves who did it. I mean, a physical office must be key to every element of functioning in life, right? * Reversing the accidental stats file commit I made in the previous commit. * Updating the "leftovers" from the previous merge to make it consistent with the call syntax in the new, ghostless CLUBB. * Updated the turbulent sedimentation code to handle upper and lower boundary conditions in a better manner. * I have finished de-ghosting the entirety of advance_microphys_module.F90 and all codes that are underneath its umbrella. * I finished de-ghosting the radiation portion of CLUBB. * I have removed the ghost level from hydrostatic_module.F90. * I removed the ghost point from parameters_tunable and started referencing the ghostless grid through the entirety of clubb_api_module as well as in all of the G-unit tests. * Deghosted another file. Not too many left. * Deghosted sounding.F90 * I have deghosted clubb_driver.F90 and everything below its umbrella, which is a huge benchmark in this process. * It is not necessary to de-ghost the source code for the tuner, since the information on what levels it is tuning for is fed in from input files. Within the tuner input files, I have adjusted the tuning ranges by 1 to compensate for the fact that the ghost level has now been entirely removed from the model. * Got rid of some unnecessary "use grid_class" statements that were still referencing the old grid. * I have found a bug in the ghostless SILHS code in the SILHS code that calculates the variances and covariances of moisture and heat (that are fed back into the model predictive equations). In short, variables that were used to store the grid mean values of thl, rt, and w were being set to 0 at level 1. This was fine when level 1 was the ghost level, but level 1 is no longer the ghost level. This was root cause of the issue. * The line that sets rand_pool at level 1 that was merged in during the previous merge commit needs to be removed. * These lines also needed to be fixed because they were supposed to be changed to nzt / 2 after the previous merge commit. * Correcting a bug in coamps microphysics regarded the unnecessary interpolation of hydrometeor sedimentation velocities to the zm grid. This interpolation is a bug because CLUBB expects hydrometeor velocities output on the zt grid. * I am committing a fix to the _ta budget terms. It will fix the error messages as well allow for budget term agreement between the master and clubb_ghost_exorcism branches. * Fixing an error in the ghostless budget stats for turbulent sedimentation. * After the merge, I am once again updating the merged code for ghost level removal. * Getting rid of leftover ghost removal junk that was still lying around. * I needed to pass p_sfc inside CLUBB core to help set the value of p_in_Pa_zm at level 1. * C11_Skw_fnc is a zt variable, while Cx_fnc_Richardson is a zm variable. The offset is to keep results the same between the current master branch and the clubb_ghost_exorcism branch when the l_use_C11_Richardson flag is enabled. * Fixed a bug. * I found a couple more instances where the api had dimensions switched around. * Eliminated diffusion_cloud_frac_zt_lhs, which is unused code that isn't even hooked up (called from) anywhere in the model anymore. * Changes that also needed to be made with the previous commit. * The source of the array out-of-bounds error. * Moving grid_class_new back to grid_class! * Reminder notes in case input_fields gets used in the future. * I accidentally committed input fields related changes to rico_model.in that weren't meant to be committed in the previous commit. I am undoing those now. * Having clubb thermodynamic level 1 below the surface is no longer the stanard scenario! --------- Co-authored-by: Gunther Huebler <huebler@uwm.edu> 2024-08-22 08:27:45 -050090c974765822217b0693858a0ac0f115c5b964a2Clubb ghost exorcism (#1159)editpdf_closure_module.F90editclip_explicit.F90editadvance_xm_wpxp_module.F90editadvance_wp2_wp3_module.F90editnumerical_check.F90editsfc_varnce_module.F90editadvance_clubb_core_module.F90editstats_clubb_utilities.F90editdiffusion.F90editturbulent_adv_pdf.F90editadvance_xp3_module.F90editadvance_helper_module.F90editcalc_pressure.F90editprecipitation_fraction.F90editsponge_layer_damping.F90editadg1_adg2_3d_luhar_pdf.F90editgrid_class.F90editmixing_length.F90editsigma_sqd_w_module.F90editparameters_tunable.F90edithydromet_pdf_parameter_module.F90editpos_definite_module.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editSkx_module.F90editclubb_api_module.F90editfill_holes.F90editstats_type.F90editmono_flux_limiter.F90editmean_adv.F90editsetup_clubb_pdf_params.F90silhs_api_module.F90est_kessler_microphys_module.F90transform_to_pdf_module.F90lh_microphys_var_covar_module.F90output_2D_samples_module.F90latin_hypercube_driver_module.F903b4700eb924086aac1093d1401fb4f59c7a66b501724333265000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb ghost exorcism (#1159) * I am adding grid_class_new.F90 to the code as a copy of grid_class.F90. The first step toward removing the ghost level from the model is to modify the grid file. Having a second grid file in play will allow functions and subroutines that are undergoing modification earlier in this process to use the new file, while functions and subroutines that have not yet been modified will continue to use the old grid file until they can be modified. At the end of this process, the old grid file will be able to be removed and grid_class_new.F90 will simply be able to be renamed grid_class.F90 at that point. In this commit, I have altered the schematic and the comments at the very start of the module to be "ghostless". * Updated grid_class for the changes to the grid interpolation weighting functions for the new "ghostless" ascending grid. * Committing some updates to the new grid class file for ghostless ascending. * Updating to match recent changes made to grid_class.F90. * I finished the removal of the ghost level from the entirety of the new grid_class file. This standalone file compiles successfully. * Removing the sources of compiler warnings in grid_class_new.F90 (these were carried over from grid_class.F90). * Committing progress in advance_wp2_wp3_module.F90 with regards to ghostless grid. * I am committing the updated version of grid_class_new.F90 that allows all cases to run, regardless of grid_type. * Fixed a bug in grid_class_new.F90 When grid_type = 2, the calculations of the indices begin_height and end_height are based on the thermodynamic level grids. Those grid indices should be used in the call to setup_grid_heights, where the array of thermodynamic_heights, from index begin_height to index end_height, should become gr%zt. When grid_type - 3, the calculations of the indices begin_height and end_height are based on the momentum grid levels. Either way, momentum_heights and thermodynamic_heights should both have the array from begin_height to end_height passed in. When grid_type = 2, only the thermodynamic height array is relevant in the setup. When grid_type = 3, only the momentum height array is relevant in the setup. * For thermodynamic_height, 1:nzmax-1 is the entire array, but I entered this for a clarification, especially considering the following check block. * Updated grid_class_new to better handle the begin_height and end_height indices. * Some modifications to advance_wp2_wp3 * Committed some temporary code. * committed some temporary changes to clubb_api_module. * Making a bunch of commits to clubb_driver that are mainly temporary for interface and printing purposes. * Deghosted another subroutine. * Updated wp2_term_ta_lhs to use the new gridding. * De-ghosting wp2_terms_ac_pr2_lhs * De-ghosted wp2_term_pr3_rhs * Deghosting wp3_term_tp_lhs. * Deghosted wp3_terms_ac_pr2_lhs * Updated the wp3_term_ta_ADG1_lhs subroutine to use boundary conditions where wp3 (at the top level and bottom momentum levels of the model) is assumed to have a value of 0. * For single loop vectors, removing the "collapse(2)" from the acc statements. This commit is not bit changing, but the previous commit to this branch was BIT_CHANGING:902d6caed8a4533f59f4165106276959b4f90895 * I updated wp3_term_ta_explicit_rhs for the ghostless grid. When l_explicit_turbulent_adv_wp3 is turned on, the results from this branch exactly match those found on the master branch. * Updating diffusion_zm_lhs for "Ghostless" gridding. * Fixed a typo in the comments that was introduced in the previous commit. * Updated for "ghostless" diffusion. * With wp3 now being set to a fixed-point boundary condition value of 0 at the current thermodynamic level 1 (first t-lev above the surface), it is not necessary to loop over level 1 within the code for each wp3 term. Also contains code to enforce a fixed-point boundary condition of wp3=0 at the first thermodynamic level above the surface. * Restoring diffusion to the way it should be for the exorcised ghost grid prior to the most recent master merge. Lines for the ghost point were accidentally added during the merge commit. * Updated code to correct wp3_bp1 and wp3_pr2 budget terms so that they still match bit-for-bit what is found in the master branch. * Updating term_ma_zm_lhs for ghostless gridding. Results are bit-for-bit identical. * After debugging, I am now committing the ghostless version of term_ma_zt_lhs. * Updating the clubb_ghost_exorcism branch for ghostless wp23 rhs, lhs, and solve. This revision runs; however, there are still some issues tracking down the source of problems in maintaining bit-for-bit results. * Updated to maintain bit-for-bitness with the master code. * Finished exorcising the ghost from advance_wp2_wp3_module.F90. * Small openacc changes to fix GPU runs * Adjusting new hybrid PDF code to continue to match the master branch bit-for-bit while construction continues. * Committing the first portion of a nomenclature change where the number of momentum vertical grid levels is denoted as nzm rather than nz. * Changing the notation of the number of grid levels on the momentum grid, previously nz, to nzm in some files. * Changed some comments and a little bit of code in the new grid_class file to provide a better description. * Updated sigma_sqd_w_module for ghostless gridding. * I added the new "ghostless" discretization to turbulent_adv_pdf.F90, and also appropriately altered the points in the code where the turbulent advection subroutines are called from in advance_xm_wpxp_module.F90 and advance_xp2_xpyp_module.F90. The code produced bit-for-bit results in regards to the standard configuration, the new hybrid PDF configuration, and also for the configuration with the godunov flags turned on. * Altered many of the lower-level subroutines in advance_xp2_xpyp_module.F90 for ghostless gridding. * Upgraded subroutine calc_xp2_xpyp_ta_terms for ghostless discretization. This should alter the results when the new_hybrid PDF is used in conjunction with upwind discretization, but it doesn't alter the results for anything else. * Completed making advance_xp2_xpyp ghostless. * Completed the de-ghosting of advance_windm_edsclrm. Results are BIT_CHANGING because the ghost level was interacting with the results. * The call to calc_xpwp from advance_microphys was not supposed to be updated yet. It wound up being sort of "partially updated" for ghostless gridding, which was a bug that led to some diagnostic output fields not being bit-for-bit. In this commit, I returned it to its prior form so that zm output files once again retain bit-for-bit status between this branch and the master. * The ghost point interface statements after the return from advance_windm_edsclrm needed to be encased in the same conditional statements that the calculations occurred in with the aforementioned subroutine. This change fixes a bug where a handful of cases had results that were not bit-for-bit from revisions before this code was added. * Fixed bug where the wrong stats were being recorded to the stats for coef_wpthlp2_implicit, etc. * I am committing a bug fix to the implicit surface flux calculation in the eddy-diffusivity wind code (which is used when l_predict_upwp_vpwp is turned off). I am also committing some temporary ghost point interface stats code within advance_windm_edsclrm. * I updated the diagrams in advance_windm_edsclrm to reflect the new ghostless grid. * I improved the description section of advance_windm_edsclrm. * Made numerous low-level subroutines ghostless within advance_xm_wpxp_module.F90. Maintained bit-for-bit results with the master branch. * I am updating the xm wpxp code that calls the wpxp turbulent advection term based on your PDF and option for ghostless gridding. * Updating some of the lower-level functions of the monotonic flux limiter for ghostless gridding. * I have updated the monotonic flux limiter for ghostless gridding! * A couple of redundant declarations were brought in on the last merge. * Committing further updates to ghostless gridding, including: 1) Further modifications to advance_xm_wpxp, which includes branching out in Brunt-Vaisala frequency calculations in advance_helper; 2) Update in calculating the initial pressure; and 3) updating grid class new to use the same "value drop down" in the zt2zm function and "derivative drop down" in the ddzt function that are now used in grid_class in the master. Results are bit-for-bit identical with the master. * Updated xm_wpxp_lhs for ghostless gridding. * Made xm_wpxp_rhs ghostless. * Updated xm_wpxp_solve for ghostless gridding! * Updating pos_definite_module.F90 for ghostless gridding. * Updated vertical hole filling and xm clipping and stats for ghost point removal. Results are still bit-for-bit with the master branch. * Updated advance_xm_wpxp to remove the ghost point. * Updating some zt stats to use a value of 0 for the "ghost" level. * Updated subroutine compute_mixing_length for ghostless gridding. * Removing the ghost point from calculate_Lscale_directly * Added a "ghostbuster" option (-g) in the run_bindiff_all.py python script that omits the "ghost" level from the comparison for _zt.nc output files when envoked. * I de-ghosted the l_diagnose_Lscale_from_tau code. * Fixing a couple bugs with the merge. * De-ghosted a couple of subroutines with advance_helper_module.F90. * Code wasn't compiling because of too many characters on one line. * De-ghosted precipitation_fraction.F90. * De-ghosted more code, including sfc_varnce_module.F90. * De-ghosted numerical_check.F90 * Committing a chunk of code that effectively "finishes off" the deghosting of CLUBB core, although results aren't there yet and it still needs more debugging. * This corrects the bug where an error would occur when trying to compare a run with a ghost level to a run without a ghost level. * Commiting some necessary ghost point removal code. * Updated the calculations of rcm_in_layer and cloud_cover for ghostless gridding. * I removed the ghost point from all the files within the Benchmark_cases directory. * I am committing code that removes the ghost level from setup_clubb_pdf_params and most of the collection of CLUBB's microphysics schemes. * Fixing a bug in SILHS where sample point values were being overwritten at level 1. * I fixed some bugs in the ghostless version of the Morrison microphysics driver. * I fixed some array declaration mismatches in silhs_api_module.F90. * I have deghosted the call to the code that calculates microphysics tendencies and everything below it. * Performed a de-ghosting, as well as an improvement that ensures that mean sedimentation is always conservative (excluding the amount of hydrometeor that leaves the domain at the surface), to all subroutines at the level of microphys_lhs and lower in advance_microphys_module.F90. This includes all process-related subroutines like those that govern sedimentation or turbulent sedimentation. Gee, how is it possible that such are large amount of work gets done when there's no office. It must have been magic elves who did it. I mean, a physical office must be key to every element of functioning in life, right? * Reversing the accidental stats file commit I made in the previous commit. * Updating the "leftovers" from the previous merge to make it consistent with the call syntax in the new, ghostless CLUBB. * Updated the turbulent sedimentation code to handle upper and lower boundary conditions in a better manner. * I have finished de-ghosting the entirety of advance_microphys_module.F90 and all codes that are underneath its umbrella. * I finished de-ghosting the radiation portion of CLUBB. * I have removed the ghost level from hydrostatic_module.F90. * I removed the ghost point from parameters_tunable and started referencing the ghostless grid through the entirety of clubb_api_module as well as in all of the G-unit tests. * Deghosted another file. Not too many left. * Deghosted sounding.F90 * I have deghosted clubb_driver.F90 and everything below its umbrella, which is a huge benchmark in this process. * It is not necessary to de-ghost the source code for the tuner, since the information on what levels it is tuning for is fed in from input files. Within the tuner input files, I have adjusted the tuning ranges by 1 to compensate for the fact that the ghost level has now been entirely removed from the model. * Got rid of some unnecessary "use grid_class" statements that were still referencing the old grid. * I have found a bug in the ghostless SILHS code in the SILHS code that calculates the variances and covariances of moisture and heat (that are fed back into the model predictive equations). In short, variables that were used to store the grid mean values of thl, rt, and w were being set to 0 at level 1. This was fine when level 1 was the ghost level, but level 1 is no longer the ghost level. This was root cause of the issue. * The line that sets rand_pool at level 1 that was merged in during the previous merge commit needs to be removed. * These lines also needed to be fixed because they were supposed to be changed to nzt / 2 after the previous merge commit. * Correcting a bug in coamps microphysics regarded the unnecessary interpolation of hydrometeor sedimentation velocities to the zm grid. This interpolation is a bug because CLUBB expects hydrometeor velocities output on the zt grid. * I am committing a fix to the _ta budget terms. It will fix the error messages as well allow for budget term agreement between the master and clubb_ghost_exorcism branches. * Fixing an error in the ghostless budget stats for turbulent sedimentation. * After the merge, I am once again updating the merged code for ghost level removal. * Getting rid of leftover ghost removal junk that was still lying around. * I needed to pass p_sfc inside CLUBB core to help set the value of p_in_Pa_zm at level 1. * C11_Skw_fnc is a zt variable, while Cx_fnc_Richardson is a zm variable. The offset is to keep results the same between the current master branch and the clubb_ghost_exorcism branch when the l_use_C11_Richardson flag is enabled. * Fixed a bug. * I found a couple more instances where the api had dimensions switched around. * Eliminated diffusion_cloud_frac_zt_lhs, which is unused code that isn't even hooked up (called from) anywhere in the model anymore. * Changes that also needed to be made with the previous commit. * The source of the array out-of-bounds error. * Moving grid_class_new back to grid_class! * Reminder notes in case input_fields gets used in the future. * I accidentally committed input fields related changes to rico_model.in that weren't meant to be committed in the previous commit. I am undoing those now. * Having clubb thermodynamic level 1 below the surface is no longer the stanard scenario! --------- Co-authored-by: Gunther Huebler <huebler@uwm.edu> 2024-08-22 08:27:45 -05003b4700eb924086aac1093d1401fb4f59c7a66b50Clubb ghost exorcism (#1159)editoutput_2D_samples_module.F90editlatin_hypercube_driver_module.F90edittransform_to_pdf_module.F90editsilhs_api_module.F90editest_kessler_microphys_module.F90editlh_microphys_var_covar_module.F90cime_config/usermods_dirs/scam_mandatory/shell_commandscime_config/testdefs/testlist_cam.xml.gitmodulesdoc/ChangeLogcime_config/config_pes.xml54a0ba9f083604f8a1a4ad8618f89c61b374e2111724367517000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate cice and cdeps for regression failures,Changelog for PR,scam to use coldstart, restore ne30 defaults in pes configure 2024-08-22 16:58:37 -060054a0ba9f083604f8a1a4ad8618f89c61b374e211update cice and cdeps for regression failures,Changelog for PR,scam to use coldstart, restore ne30 defaults in pes configureeditcime_config/config_pes.xmleditcime_config/testdefs/testlist_cam.xmledit.gitmoduleseditdoc/ChangeLogeditcime_config/usermods_dirs/scam_mandatory/shell_commandssrc/physics/cam/clubb_mf.F90src/physics/cam/clubb_intr.F90src/physics/cam/subcol_SILHS.F903c08a43e266cfa451689a1656bb486c3bd5a44641724392996000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanges that are necessary to the CAM-CLUBB interface for ghostless CLUBB. 2024-08-23 01:03:16 -05003c08a43e266cfa451689a1656bb486c3bd5a4464Changes that are necessary to the CAM-CLUBB interface for ghostlesseditsrc/physics/cam/clubb_intr.F90editsrc/physics/cam/subcol_SILHS.F90editsrc/physics/cam/clubb_mf.F90cime_config/config_component.xmlb88c67e0904b8a56759125c732ba25513aaf48d51724431486000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduneed scam_mandatory to set COLDSTART until CLM scam mods tagged 2024-08-23 10:44:46 -0600b88c67e0904b8a56759125c732ba25513aaf48d5need scam_mandatory to set COLDSTART until CLM scam mods taggededitcime_config/config_component.xmlcime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_camcime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_cplcime_config/testdefs/testlist_cam.xmlcime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/shell_commandscime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/include_user_modsdoc/ChangeLogcime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_clm40f6c5c5d2e15624ae9d44bec609beefd33d7dae1724628091000http://carson.math.uwm.edu/jenkins/user/jetjetjet@ucar.eduupdate mpace regression test and ChangeLog 2024-08-25 17:21:31 -060040f6c5c5d2e15624ae9d44bec609beefd33d7daeupdate mpace regression test and ChangeLogeditcime_config/testdefs/testlist_cam.xmldeletecime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_camdeletecime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_cpldeletecime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/include_user_modsdeletecime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/shell_commandseditdoc/ChangeLogdeletecime_config/testdefs/testmods_dirs/cam/scam_mpace_outfrq9s/user_nl_clmsrc/dynamics/se/stepon.F90src/dynamics/se/se_single_column_mod.F90src/dynamics/eul/stepon.F90src/dynamics/se/dyn_grid.F90src/dynamics/eul/dyn_grid.F90src/utils/hybvcoord_mod.F90doc/ChangeLogsrc/dynamics/se/dyn_comp.F90src/utils/hycoef.F90src/control/scamMod.F90src/dynamics/se/gravity_waves_sources.F90src/dynamics/se/apply_iop_forcing.F90src/dynamics/eul/dyn_comp.F90c50362cbfcffaf36096181d7a6b6da3a9d310a7c1724679072000http://carson.math.uwm.edu/jenkins/user/johnjohnjohn@thetruesdales.comupdate ChangeLog, pull hvcoord addition 2024-08-26 07:31:12 -0600c50362cbfcffaf36096181d7a6b6da3a9d310a7cupdate ChangeLog, pull hvcoord additioneditsrc/dynamics/se/stepon.F90editsrc/dynamics/eul/stepon.F90editsrc/dynamics/se/dyn_comp.F90editsrc/dynamics/se/se_single_column_mod.F90deletesrc/utils/hybvcoord_mod.F90editsrc/control/scamMod.F90editsrc/dynamics/se/apply_iop_forcing.F90editsrc/dynamics/se/gravity_waves_sources.F90editsrc/dynamics/se/dyn_grid.F90editsrc/utils/hycoef.F90editsrc/dynamics/eul/dyn_grid.F90editdoc/ChangeLogeditsrc/dynamics/eul/dyn_comp.F90advance_helper_module.F905063ce59ebf30494012df2da0a8d9e1f5cc945891724704978000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduVariable name correction in acc data statement. 2024-08-26 15:42:58 -05005063ce59ebf30494012df2da0a8d9e1f5cc94589Variable name correction in acc data statement.editadvance_helper_module.F90advance_xp2_xpyp_module.F908553509b703bf07dd4c56fee55c47f11652aa7e21724708483000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSplitting zeros_vector into versions with nzt or nzm size to match sizes in subroutine. 2024-08-26 16:41:23 -05008553509b703bf07dd4c56fee55c47f11652aa7e2Splitting zeros_vector into versions with nzt or nzm size to match sizes in subroutine.editadvance_xp2_xpyp_module.F90clubb_api_module.F90c571fcfd510bd0c8721aadb8a37380212ac2b4ff1724708509000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking radf size correct in api and clubb_driver. 2024-08-26 16:41:49 -0500c571fcfd510bd0c8721aadb8a37380212ac2b4ffMaking radf size correct in api and clubb_driver.editclubb_api_module.F90doc/ChangeLog1cec1c5952b41d684d1e8ceb5bb9782a251fff7d1724772258000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-08-27 11:24:18 -04001cec1c5952b41d684d1e8ceb5bb9782a251fff7dupdate ChangeLogeditdoc/ChangeLogdoc/ChangeLogf7153a633265ceee764852603c3f2e13fae4e5041724803981000http://carson.math.uwm.edu/jenkins/user/eatoneatoneaton@alum.mit.eduupdate ChangeLog 2024-08-27 20:13:01 -0400f7153a633265ceee764852603c3f2e13fae4e504update ChangeLogeditdoc/ChangeLogsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90src/chemistry/aerosol/aerosol_properties_mod.F90src/chemistry/aerosol/aero_deposition_cam.F90536e7cbf70d0cc61e8f21304f92bfef8609dae8e1724858391000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduadd error checking and comments modified: src/chemistry/aerosol/aero_deposition_cam.F90 modified: src/chemistry/aerosol/aerosol_properties_mod.F90 modified: src/chemistry/aerosol/modal_aerosol_properties_mod.F90 2024-08-28 09:19:51 -0600536e7cbf70d0cc61e8f21304f92bfef8609dae8eadd error checking and commentseditsrc/chemistry/aerosol/modal_aerosol_properties_mod.F90editsrc/chemistry/aerosol/aerosol_properties_mod.F90editsrc/chemistry/aerosol/aero_deposition_cam.F90src/dynamics/fv3components/cdepsdoc/ChangeLogcomponents/cicee7f1ea1e90c2d98bf232ab5a27739e89b7473ed21724864041000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-08-28 10:54:01 -0600e7f1ea1e90c2d98bf232ab5a27739e89b7473ed2ChangeLog drafteditcomponents/cdepseditcomponents/ciceeditdoc/ChangeLogeditsrc/dynamics/fv3doc/ChangeLogc9d17f164aa2ad5bc72f519b472644c545c260b11724876620000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-08-28 14:23:40 -0600c9d17f164aa2ad5bc72f519b472644c545c260b1ChangeLog updateeditdoc/ChangeLogsrc/physics/cam/zm_conv_intr.F907a63a3c2b3082aefb95152dd2f473d0dff9716dc1724883356000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduNeglected to remove the 0.5*timestep call from zm_convr_run - done now 2024-08-28 16:15:56 -06007a63a3c2b3082aefb95152dd2f473d0dff9716dcNeglected to remove the 0.5*timestep call from zm_convr_run - done noweditsrc/physics/cam/zm_conv_intr.F90doc/ChangeLog1fad54910dacf2705612de63b1d9bad1cde1faa51724884660000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-08-28 16:37:40 -06001fad54910dacf2705612de63b1d9bad1cde1faa5ChangeLog updateeditdoc/ChangeLogdoc/ChangeLog3fcced6019d97a71a572eaaf1811b580e85256391724952046000http://carson.math.uwm.edu/jenkins/user/cacraigcacraigcacraig@ucar.eduAdd ChangeLog for cam6_4_026 2024-08-29 11:20:46 -06003fcced6019d97a71a572eaaf1811b580e8525639Add ChangeLog for cam6_4_026editdoc/ChangeLogadvance_clubb_core_module.F90advance_helper_module.F905d6de8e6e5c208f82bfb0bccc4ebf05346f9825a1724956382000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi_zm calc (Part 4) - Implementing calc_Ri_zm (#1160) * Ri_zm calc (Part 4) - Implementing calc_Ri_zm CLUBB tocket #1145 1. advance_helper_module.F90 - Implemented calc_Ri_zm - Replaced Ri_zm calculations in compute_Cx_fnc_Richardson 2. advance_clubb_core_module.F90 Replaced Ri_zm calculations in advance_clubb_core 2024-08-29 13:33:02 -05005d6de8e6e5c208f82bfb0bccc4ebf05346f9825aRi_zm calc (Part 4) - Implementing calc_Ri_zm (#1160)editadvance_helper_module.F90editadvance_clubb_core_module.F90.gitmodulescomponents/clmaab7bc079a42074823e0dead3eb15806f55f09551725039862000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduupdate ctsm tag to ctsm5.2.027 2024-08-30 11:44:22 -0600aab7bc079a42074823e0dead3eb15806f55f0955update ctsm tag to ctsm5.2.027edit.gitmoduleseditcomponents/clmdoc/ChangeLogc87b956bf9c9e3d531c1964360c1ea61b2d429661725053910000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog draft 2024-08-30 15:38:30 -0600c87b956bf9c9e3d531c1964360c1ea61b2d42966ChangeLog drafteditdoc/ChangeLogadvance_helper_module.F90841d3a1606139e363e09e8bab9f6fda4a41f871e1725305536000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi zm calc4 (#1168) Bug fix for Ri_zm calc (Part 4) commit CLUBB tocket #1145 * Added missing acc loop directive in calc_Ri_zm 2024-09-02 14:32:16 -0500841d3a1606139e363e09e8bab9f6fda4a41f871eRi zm calc4 (#1168)editadvance_helper_module.F90doc/ChangeLog734501a7ed43b8d2cc00f80cf896ae970443a9571725316700000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-09-02 16:38:20 -0600734501a7ed43b8d2cc00f80cf896ae970443a957ChangeLog updateeditdoc/ChangeLogdoc/ChangeLogdefecea1a57c7de16b5e59a9a7b5412cc9eb6a1e1725373407000http://carson.math.uwm.edu/jenkins/user/fvittfvittfvitt@ucar.eduChangeLog update 2024-09-03 08:23:27 -0600defecea1a57c7de16b5e59a9a7b5412cc9eb6a1eChangeLog updateeditdoc/ChangeLogsrc/physics/cam/clubb_intr.F9083cb3fde57b4b3e6ecbf8c2c3b6432af8977d94f1725397564000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPDFP_RTP2_CLUBB is calculated on thermodynamic grid levels and should only have "lev" number of statistical output grid levels (rather than "ilev", which is for momentum-level variables). 2024-09-03 16:06:04 -050083cb3fde57b4b3e6ecbf8c2c3b6432af8977d94fPDFP_RTP2_CLUBB is calculated on thermodynamic grid levels and shouldeditsrc/physics/cam/clubb_intr.F90jenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfile9fce0e5a0ef51e246f0514e024a2a3efc7aaed971725400035000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving lines from the ERP Jenkins test that (1) no longer work based on the present state of coding in clubb_intr.F90, and (2) no longer seem to be necessary. 2024-09-03 16:47:15 -05009fce0e5a0ef51e246f0514e024a2a3efc7aaed97Removing lines from the ERP Jenkins test that (1) no longer work basededitjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilestats_zm_module.F90stats_variables.F90clip_semi_implicit.F90advance_xm_wpxp_module.F904cbb7d19a3edec730aa008d7f0acbfe51978902c1725574649000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWell, this will probably anger the Grim Reaper, but I have finally removed the SICL from CLUBB (as discussed a number of months ago). That term is now expunged from the entirety of CLUBB, including all source code, stats files, and postprocessing files. This change is technically BIT_CHANGING because two stats variables, wprtp_sicl and wpthlp_sicl, have been removed from stats output files. However, all results remain exactly the same. 2024-09-05 17:17:29 -05004cbb7d19a3edec730aa008d7f0acbfe51978902cWell, this will probably anger the Grim Reaper, but I have finallydeleteclip_semi_implicit.F90editadvance_xm_wpxp_module.F90editstats_zm_module.F90editstats_variables.F90run_scripts/run_cesm_uwm_coarse_res_r8029_flags.shpostprocessing/python_scripts/budget_plotter_multicol.pyrun_scripts/run_scam.bashcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_camcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camrun_scripts/run_cesm_uwm.shrun_scripts/run_cesm_uwm_coarse_res.shrun_scripts/run_scam.csh18ba4f12dbca12e6287144ad15cacbf20671e0231725632981000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the SICL from CAM -- the SICL that won't go quietly into the night! 2024-09-06 09:29:41 -050018ba4f12dbca12e6287144ad15cacbf20671e023Removing the SICL from CAM -- the SICL that won't go quietly into theeditrun_scripts/run_scam.basheditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_cameditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sheditpostprocessing/python_scripts/budget_plotter_multicol.pyeditrun_scripts/run_cesm_uwm_coarse_res.sheditrun_scripts/run_scam.csheditrun_scripts/run_cesm_uwm.sheditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camsrc/physics/clubb/hydromet_pdf_parameter_module.F90src/physics/clubb/recl.incsrc/physics/clubb/file_functions.F90components/cmepscomponents/clmsrc/physics/clubb/clubb_api_module.F90src/physics/clubb/pdf_closure_module.F90src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90src/physics/clubb/stats_type.F90src/physics/clubb/T_in_K_module.F90src/physics/clubb/interpolation.F90src/physics/clubb/saturation.F90src/physics/clubb/sigma_sqd_w_module.F90src/physics/clubb/stats_variables.F90src/physics/clubb/clubb_precision.F90src/physics/clubb/pos_definite_module.F90src/physics/clubb/lapack_wrap.F90src/physics/clubb/stats_rad_zt_module.F90src/physics/clubb/new_hybrid_pdf_main.F90src/physics/clubb/mixing_length.F90src/physics/clubb/parameter_indices.F90src/physics/clubb/advance_xp3_module.F90src/physics/clubb/pdf_utilities.F90src/physics/clubb/advance_windm_edsclrm_module.F90libraries/FMSsrc/physics/clubb/clip_semi_implicit.F90src/physics/clubb/input_reader.F90src/physics/clubb/code_timer_module.F90src/physics/clubb/tridiag_lu_solver.F90cimesrc/physics/clubb/advance_wp2_wp3_module.F90src/physics/clubb/output_netcdf.F90src/physics/clubb/matrix_solver_wrapper.F90sharecomponents/rtmccs_configsrc/physics/clubb/mean_adv.F90src/physics/clubb/stats_type_utilities.F90src/atmos_physsrc/physics/clubb/index_mapping.F90src/physics/clubb/constants_clubb.F90src/physics/clubb/diagnose_correlations_module.F90src/physics/clubb/stats_lh_sfc_module.F90src/physics/silhs/est_kessler_microphys_module.F90src/physics/clubb/model_flags.F90src/physics/silhs/silhs_importance_sample_module.F90src/physics/clubb/stats_zt_module.F90src/physics/clubb/stat_file_module.F90src/physics/clubb/mono_flux_limiter.F90src/physics/clubb/lapack_interfaces.F90src/physics/clubb/calc_pressure.F90src/physics/clubb/advance_xm_wpxp_module.F90src/physics/clubb/new_hybrid_pdf.F90src/dynamics/fv3src/physics/clubb/Nc_Ncn_eqns.F90src/physics/clubb/stats_lh_zt_module.F90src/physics/clubb/error_code.F90src/physics/clubb/fill_holes.F90src/physics/clubb/new_pdf_main.F90src/physics/clubb/corr_varnce_module.F90src/physics/silhs/latin_hypercube_driver_module.F90src/physics/clubb/output_grads.F90src/physics/silhs/math_utilities.F90src/physics/clubb/Skx_module.F90src/physics/clubb/diffusion.F90components/cdepssrc/physics/clubb/advance_clubb_core_module.F90src/physics/clubb/advance_xp2_xpyp_module.F90src/physics/silhs/transform_to_pdf_module.F90src/physics/clubb/endian.F90src/physics/clubb/stats_rad_zm_module.F90src/physics/clubb/stats_sfc_module.F90src/hemcosrc/physics/clubb/clip_explicit.F90src/physics/clubb/parameters_model.F90src/physics/clubb/pdf_parameter_module.F90chem_procsrc/physics/clubb/LY93_pdf.F90src/physics/clubb/sponge_layer_damping.F90src/physics/clubb/mt95.F90src/physics/clubb/precipitation_fraction.F90.gitmodulessrc/physics/clubb/matrix_operations.F90src/physics/clubb/new_tsdadg_pdf.F90components/cismsrc/physics/clubb/array_index.F90src/physics/clubb/stats_zm_module.F90src/physics/clubb/turbulent_adv_pdf.F90src/physics/silhs/parameters_silhs.F90components/mosartsrc/physics/silhs/silhs_api_module.F90src/physics/clubb/parameters_tunable.F90src/physics/silhs/output_2D_samples_module.F90src/physics/clubb/advance_helper_module.F90src/physics/clubb/calc_roots.F90src/physics/clubb/setup_clubb_pdf_params.F90src/physics/clubb/numerical_check.F90src/physics/silhs/generate_uniform_sample_module.F90src/physics/clubb/new_pdf.F90src/physics/silhs/latin_hypercube_arrays.F90src/physics/clubb/stats_clubb_utilities.F90src/physics/clubb/calendar.F90src/physics/silhs/lh_microphys_var_covar_module.F90components/cicesrc/physics/clubb/penta_lu_solver.F90src/physics/clubb/sfc_varnce_module.F90src/physics/clubb/input_names.F90src/physics/clubb/grid_class.F9077e5cb885d0991e9add6426cf84b5567e813fe9f1726083151000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduRemove old clubb and sihls, update submodules 2024-09-11 13:32:31 -060077e5cb885d0991e9add6426cf84b5567e813fe9fRemove old clubb and sihls, update submodulesdeletesrc/physics/clubb/calc_pressure.F90deletesrc/physics/clubb/clubb_api_module.F90deletesrc/physics/clubb/index_mapping.F90deletesrc/physics/clubb/constants_clubb.F90deletesrc/physics/clubb/parameter_indices.F90deletesrc/physics/silhs/silhs_importance_sample_module.F90deletesrc/physics/clubb/diagnose_correlations_module.F90deletesrc/physics/clubb/new_hybrid_pdf_main.F90deletesrc/physics/clubb/stats_type_utilities.F90deletesrc/physics/silhs/latin_hypercube_driver_module.F90deletesrc/physics/clubb/advance_clubb_core_module.F90deletesrc/physics/clubb/clip_explicit.F90editcomponents/cicedeletesrc/physics/clubb/new_hybrid_pdf.F90deletesrc/physics/silhs/transform_to_pdf_module.F90editcomponents/cdepsdeletesrc/physics/clubb/stats_sfc_module.F90deletesrc/physics/clubb/sigma_sqd_w_module.F90deletesrc/physics/silhs/silhs_api_module.F90deletesrc/physics/clubb/LY93_pdf.F90deletesrc/physics/clubb/sponge_layer_damping.F90deletesrc/physics/clubb/stats_zt_module.F90deletesrc/physics/clubb/output_grads.F90deletesrc/physics/clubb/stat_file_module.F90deletesrc/physics/clubb/interpolation.F90deletesrc/physics/clubb/stats_variables.F90deletesrc/physics/clubb/T_in_K_module.F90deletesrc/physics/silhs/parameters_silhs.F90deletesrc/physics/clubb/stats_rad_zm_module.F90deletesrc/physics/clubb/parameters_tunable.F90deletesrc/physics/clubb/calc_roots.F90deletesrc/physics/clubb/matrix_solver_wrapper.F90edit.gitmoduleseditsrc/dynamics/fv3deletesrc/physics/clubb/error_code.F90deletesrc/physics/clubb/advance_windm_edsclrm_module.F90deletesrc/physics/clubb/stats_lh_sfc_module.F90deletesrc/physics/clubb/pdf_parameter_module.F90deletesrc/physics/clubb/matrix_operations.F90editlibraries/FMSdeletesrc/physics/clubb/pdf_utilities.F90deletesrc/physics/clubb/recl.incdeletesrc/physics/clubb/mt95.F90deletesrc/physics/clubb/input_names.F90deletesrc/physics/clubb/mono_flux_limiter.F90deletesrc/physics/clubb/pdf_closure_module.F90deletesrc/physics/clubb/code_timer_module.F90deletesrc/physics/clubb/hydromet_pdf_parameter_module.F90deletesrc/physics/clubb/lapack_wrap.F90deletesrc/physics/clubb/stats_lh_zt_module.F90deletesrc/physics/silhs/generate_uniform_sample_module.F90deletesrc/physics/clubb/advance_xp3_module.F90deletesrc/physics/clubb/setup_clubb_pdf_params.F90deletesrc/physics/clubb/sfc_varnce_module.F90deletesrc/physics/clubb/clubb_precision.F90editcomponents/cismdeletesrc/physics/clubb/new_pdf.F90deletesrc/physics/silhs/latin_hypercube_arrays.F90deletesrc/physics/clubb/stats_clubb_utilities.F90deletesrc/physics/clubb/advance_xp2_xpyp_module.F90deletesrc/physics/clubb/diffusion.F90deletesrc/physics/clubb/lapack_interfaces.F90editsrc/atmos_physdeletesrc/physics/clubb/stats_type.F90deletesrc/physics/silhs/math_utilities.F90deletesrc/physics/clubb/new_tsdadg_pdf.F90deletesrc/physics/clubb/advance_xm_wpxp_module.F90deletesrc/physics/clubb/array_index.F90deletesrc/physics/clubb/Nc_Ncn_eqns.F90deletesrc/physics/clubb/mean_adv.F90editsharedeletesrc/physics/silhs/est_kessler_microphys_module.F90deletesrc/physics/clubb/precipitation_fraction.F90deletesrc/physics/silhs/lh_microphys_var_covar_module.F90editchem_procdeletesrc/physics/clubb/advance_helper_module.F90deletesrc/physics/clubb/turbulent_adv_pdf.F90deletesrc/physics/clubb/pos_definite_module.F90deletesrc/physics/clubb/input_reader.F90deletesrc/physics/clubb/tridiag_lu_solver.F90deletesrc/physics/clubb/advance_wp2_wp3_module.F90deletesrc/physics/clubb/stats_zm_module.F90editcomponents/cmepsdeletesrc/physics/clubb/grid_class.F90deletesrc/physics/clubb/calendar.F90deletesrc/physics/clubb/file_functions.F90deletesrc/physics/clubb/Skx_module.F90deletesrc/physics/clubb/penta_lu_solver.F90deletesrc/physics/clubb/saturation.F90deletesrc/physics/clubb/endian.F90editcomponents/rtmdeletesrc/physics/clubb/output_netcdf.F90editcomponents/clmeditcomponents/mosartdeletesrc/physics/clubb/mixing_length.F90deletesrc/physics/clubb/model_flags.F90deletesrc/physics/clubb/parameters_model.F90deletesrc/physics/clubb/clip_semi_implicit.F90deletesrc/physics/clubb/stats_rad_zt_module.F90deletesrc/physics/silhs/output_2D_samples_module.F90editsrc/hemcodeletesrc/physics/clubb/fill_holes.F90deletesrc/physics/clubb/new_pdf_main.F90deletesrc/physics/clubb/numerical_check.F90deletesrc/physics/clubb/corr_varnce_module.F90deletesrc/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editccs_configeditcimeadvance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90advance_xm_wpxp_module.F90c631c7d3db48f650d77a570b2534e358aa02f1a81726084912000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@users.noreply.github.comChange variables from a1 and a3 to a1_coef and a3_coef For issue #977 2024-09-11 15:01:52 -0500c631c7d3db48f650d77a570b2534e358aa02f1a8Change variables from a1 and a3 to a1_coef and a3_coefeditadvance_wp2_wp3_module.F90editadvance_xp2_xpyp_module.F90editadvance_xm_wpxp_module.F90jenkins_tests/cam_clubb_code_copy/cam_clubb_code_copy.bashf324bb332f2eb5a3f56face25ac326a78198db9d1726254074000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate copy script to new location 2024-09-13 13:01:14 -0600f324bb332f2eb5a3f56face25ac326a78198db9dUpdate copy script to new locationeditjenkins_tests/cam_clubb_code_copy/cam_clubb_code_copy.bashbld/configure1cedd4ea4e6b20eaf16a47daf107c494e871d1791726254741000http://carson.math.uwm.edu/jenkins/user/kateckateckatec@ucar.eduUpdate configure script to match NCAR 2024-09-13 13:12:21 -06001cedd4ea4e6b20eaf16a47daf107c494e871d179Update configure script to match NCAReditbld/configureadvance_clubb_core_module.F90advance_xp3_module.F90advance_xm_wpxp_module.F90numerical_check.F90stats_zt_module.F90pdf_closure_module.F90adg1_adg2_3d_luhar_pdf.F90stats_clubb_utilities.F90stats_zm_module.F90sfc_varnce_module.F90advance_windm_edsclrm_module.F90new_hybrid_pdf_main.F903ab47e7b81c1bc1b6d5b8ee0fc7ab285614ae7c31726575983000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comchange loop index to sclr and edsclr for sclr_dim and edsclr_dim (#1173) Whenever a loop is dimensioned sclr_dim, use sclr as the loop index. Whenever a loop is dimensioned edsclr_dim, use edsclr as the loop index. Added changes and tested for binary differences with the following flags for the gabls2 case: l_host_applies_sfc_fluxes=true/false l_call_pdf_closure_twice=true/false l_lmm_stepping=true/false l_explicit_turbulent_adv_wpxp=true/false See #987. 2024-09-17 07:26:23 -05003ab47e7b81c1bc1b6d5b8ee0fc7ab285614ae7c3change loop index to sclr and edsclr for sclr_dim and edsclr_dim (#1173)editsfc_varnce_module.F90editstats_clubb_utilities.F90editadvance_windm_edsclrm_module.F90editadvance_xm_wpxp_module.F90editnumerical_check.F90editadvance_clubb_core_module.F90editnew_hybrid_pdf_main.F90editadvance_xp3_module.F90editstats_zt_module.F90editadg1_adg2_3d_luhar_pdf.F90editpdf_closure_module.F90editstats_zm_module.F90stats_variables.F90advance_clubb_core_module.F90stats_zm_module.F90advance_helper_module.F9077d72936a35198cc193e31782139908254a6b3f31726604813000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi zm calc5 (#1175) * Ri_zm calc (Part 5) - Implementing calc_Ri_zm CLUBB tocket #1145 Cleaning up subroutine compute_Cx_fnc_Richardson 1) In advance_helper_module.F90: - Removed superfluous inputs - Added Brunt Väisälä frequency variables, shear_sqd, and Lscale_zm as inputs - Removed call to calc_brunt_vaisala_freq_sqd - Removed zt2zm(Lscale) - Removed calculation and stat_update_var of shear_sqd 2) In advance_clubb_core: - Added stat_update_var for shear_sqd - Adjusted call to compute_Cx_fnc_Richardson 3) Renamed netcdf variable `shear_sqd` to `ddzt_umvm_sqd` to keep variable names consistent. 2024-09-17 15:26:53 -050077d72936a35198cc193e31782139908254a6b3f3Ri zm calc5 (#1175)editstats_variables.F90editadvance_clubb_core_module.F90editadvance_helper_module.F90editstats_zm_module.F90src/physics/clubb/src/CLUBB_core/numerical_check.F90src/physics/clubb/src/CLUBB_core/mt95.F90src/physics/clubb/src/CLUBB_core/calendar.F90src/physics/clubb/src/CLUBB_core/constants_clubb.F90src/physics/clubb/src/CLUBB_core/pos_definite_module.F90src/physics/clubb/src/CLUBB_core/stats_lh_sfc_module.F90src/physics/clubb/src/CLUBB_core/input_names.F90src/physics/clubb/src/CLUBB_core/stats_variables.F90src/physics/clubb/src/CLUBB_core/stat_file_module.F90src/physics/clubb/src/CLUBB_core/stats_zt_module.F90src/physics/clubb/src/CLUBB_core/index_mapping.F90src/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90src/physics/clubb/src/CLUBB_core/output_netcdf.F90src/physics/clubb/src/CLUBB_core/new_pdf.F90src/physics/clubb/src/CLUBB_core/stats_rad_zm_module.F90src/physics/clubb/src/CLUBB_core/lapack_interfaces.F90src/physics/clubb/src/CLUBB_core/advance_xp3_module.F90src/physics/clubb/src/CLUBB_core/advance_wp2_wp3_module.F90src/physics/clubb/src/CLUBB_core/new_hybrid_pdf.F90src/physics/clubb/src/CLUBB_core/grid_class.F90src/physics/clubb/src/CLUBB_core/mono_flux_limiter.F90src/physics/clubb/src/CLUBB_core/diagnose_correlations_module.F90src/physics/clubb/src/CLUBB_core/diffusion.F90src/physics/clubb/src/CLUBB_core/LY93_pdf.F90src/physics/clubb/src/CLUBB_core/fill_holes.F90src/physics/clubb/src/CLUBB_core/new_hybrid_pdf_main.F90src/physics/clubb/src/CLUBB_core/saturation.F90src/physics/clubb/src/CLUBB_core/interpolation.F90src/physics/clubb/src/CLUBB_core/new_pdf_main.F90src/physics/clubb/src/CLUBB_core/sfc_varnce_module.F90src/physics/clubb/src/CLUBB_core/stats_rad_zt_module.F90src/physics/clubb/src/CLUBB_core/advance_windm_edsclrm_module.F90src/physics/clubb/src/CLUBB_core/precipitation_fraction.F90src/physics/clubb/src/CLUBB_core/clip_explicit.F90src/physics/clubb/src/CLUBB_core/output_grads.F90src/physics/clubb/src/CLUBB_core/new_tsdadg_pdf.F90src/physics/clubb/src/CLUBB_core/parameters_model.F90src/physics/clubb/src/CLUBB_core/turbulent_adv_pdf.F90src/physics/clubb/src/CLUBB_core/pdf_utilities.F90src/physics/clubb/src/CLUBB_core/mixing_length.F90src/physics/clubb/src/CLUBB_core/stats_sfc_module.F90src/physics/clubb/src/CLUBB_core/error_code.F90src/physics/clubb/src/CLUBB_core/code_timer_module.F90src/physics/clubb/src/CLUBB_core/recl.incsrc/physics/clubb/src/CLUBB_core/corr_varnce_module.F90src/physics/clubb/src/CLUBB_core/mean_adv.F90src/physics/clubb/src/CLUBB_core/matrix_operations.F90src/physics/clubb/src/CLUBB_core/clubb_precision.F90src/physics/clubb/src/CLUBB_core/advance_helper_module.F90src/physics/clubb/src/CLUBB_core/clubb_api_module.F90src/physics/clubb/src/CLUBB_core/calc_roots.F90src/physics/clubb/src/CLUBB_core/T_in_K_module.F90src/physics/clubb/src/CLUBB_core/stats_zm_module.F90src/physics/clubb/src/CLUBB_core/array_index.F90src/physics/clubb/src/CLUBB_core/stats_clubb_utilities.F90src/physics/clubb/src/CLUBB_core/penta_lu_solver.F90src/physics/clubb/src/CLUBB_core/file_functions.F90src/physics/clubb/src/CLUBB_core/tridiag_lu_solver.F90src/physics/clubb/src/CLUBB_core/endian.F90src/physics/clubb/src/CLUBB_core/sigma_sqd_w_module.F90src/physics/clubb/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90src/physics/clubb/src/CLUBB_core/lapack_wrap.F90src/physics/clubb/src/CLUBB_core/stats_type.F90src/physics/clubb/src/CLUBB_core/Nc_Ncn_eqns.F90src/physics/clubb/src/CLUBB_core/parameter_indices.F90src/physics/clubb/src/CLUBB_core/stats_lh_zt_module.F90src/physics/clubb/src/CLUBB_core/sponge_layer_damping.F90src/physics/clubb/src/CLUBB_core/input_reader.F90src/physics/clubb/src/CLUBB_core/pdf_parameter_module.F90src/physics/clubb/src/CLUBB_core/calc_pressure.F90src/physics/clubb/src/CLUBB_core/stats_type_utilities.F90src/physics/clubb/src/CLUBB_core/parameters_tunable.F90src/physics/clubb/src/CLUBB_core/model_flags.F90src/physics/clubb/src/CLUBB_core/pdf_closure_module.F90src/physics/clubb/src/CLUBB_core/advance_xp2_xpyp_module.F90src/physics/clubb/src/CLUBB_core/setup_clubb_pdf_params.F90src/physics/clubb/src/CLUBB_core/hydromet_pdf_parameter_module.F90src/physics/clubb/src/CLUBB_core/Skx_module.F90src/physics/clubb/src/CLUBB_core/matrix_solver_wrapper.F90src/physics/clubb/src/CLUBB_core/advance_xm_wpxp_module.F907d40b81fe99ed2367bfb3afd60c3f8ce226c2f0b1726772833000http://carson.math.uwm.edu/jenkins/user/pickettCole Pickettlarsongroupgithub@gmail.comAutoupdated CLUBB_core Commit 0a575085cd29259f1fe05f40951e7d682f06e7ea Author: domkesteffen Date: Tue Sep 17 15:26:53 2024 -0500 Ri zm calc5 (#1175) * Ri_zm calc (Part 5) - Implementing calc_Ri_zm CLUBB tocket #1145 Cleaning up subroutine compute_Cx_fnc_Richardson 1) In advance_helper_module.F90: - Removed superfluous inputs - Added Brunt Väisälä frequency variables, shear_sqd, and Lscale_zm as inputs - Removed call to calc_brunt_vaisala_freq_sqd - Removed zt2zm(Lscale) - Removed calculation and stat_update_var of shear_sqd 2) In advance_clubb_core: - Added stat_update_var for shear_sqd - Adjusted call to compute_Cx_fnc_Richardson 3) Renamed netcdf variable `shear_sqd` to `ddzt_umvm_sqd` to keep variable names consistent. Commit 4f7294c182d43d0550fe0bc92568d3232c3cd41e Author: st3113n Date: Tue Sep 17 07:26:23 2024 -0500 change loop index to sclr and edsclr for sclr_dim and edsclr_dim (#1173) Whenever a loop is dimensioned sclr_dim, use sclr as the loop index. Whenever a loop is dimensioned edsclr_dim, use edsclr as the loop index. Added changes and tested for binary differences with the following flags for the gabls2 case: l_host_applies_sfc_fluxes=true/false l_call_pdf_closure_twice=true/false l_lmm_stepping=true/false l_explicit_turbulent_adv_wpxp=true/false See #987. 2024-09-19 14:07:13 -05007d40b81fe99ed2367bfb3afd60c3f8ce226c2f0bAutoupdated CLUBB_coreaddsrc/physics/clubb/src/CLUBB_core/new_pdf_main.F90addsrc/physics/clubb/src/CLUBB_core/LY93_pdf.F90addsrc/physics/clubb/src/CLUBB_core/advance_xp2_xpyp_module.F90addsrc/physics/clubb/src/CLUBB_core/output_netcdf.F90addsrc/physics/clubb/src/CLUBB_core/stats_rad_zm_module.F90addsrc/physics/clubb/src/CLUBB_core/stats_sfc_module.F90addsrc/physics/clubb/src/CLUBB_core/output_grads.F90addsrc/physics/clubb/src/CLUBB_core/mt95.F90addsrc/physics/clubb/src/CLUBB_core/code_timer_module.F90addsrc/physics/clubb/src/CLUBB_core/advance_xp3_module.F90addsrc/physics/clubb/src/CLUBB_core/new_hybrid_pdf_main.F90addsrc/physics/clubb/src/CLUBB_core/constants_clubb.F90addsrc/physics/clubb/src/CLUBB_core/fill_holes.F90addsrc/physics/clubb/src/CLUBB_core/Nc_Ncn_eqns.F90addsrc/physics/clubb/src/CLUBB_core/sigma_sqd_w_module.F90addsrc/physics/clubb/src/CLUBB_core/stats_type.F90addsrc/physics/clubb/src/CLUBB_core/parameter_indices.F90addsrc/physics/clubb/src/CLUBB_core/pos_definite_module.F90addsrc/physics/clubb/src/CLUBB_core/penta_lu_solver.F90addsrc/physics/clubb/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90addsrc/physics/clubb/src/CLUBB_core/advance_wp2_wp3_module.F90addsrc/physics/clubb/src/CLUBB_core/precipitation_fraction.F90addsrc/physics/clubb/src/CLUBB_core/T_in_K_module.F90addsrc/physics/clubb/src/CLUBB_core/sfc_varnce_module.F90addsrc/physics/clubb/src/CLUBB_core/endian.F90addsrc/physics/clubb/src/CLUBB_core/stats_lh_sfc_module.F90addsrc/physics/clubb/src/CLUBB_core/setup_clubb_pdf_params.F90addsrc/physics/clubb/src/CLUBB_core/stats_zt_module.F90addsrc/physics/clubb/src/CLUBB_core/file_functions.F90addsrc/physics/clubb/src/CLUBB_core/advance_helper_module.F90addsrc/physics/clubb/src/CLUBB_core/index_mapping.F90addsrc/physics/clubb/src/CLUBB_core/stats_lh_zt_module.F90addsrc/physics/clubb/src/CLUBB_core/stats_zm_module.F90addsrc/physics/clubb/src/CLUBB_core/recl.incaddsrc/physics/clubb/src/CLUBB_core/error_code.F90addsrc/physics/clubb/src/CLUBB_core/pdf_parameter_module.F90addsrc/physics/clubb/src/CLUBB_core/stats_variables.F90addsrc/physics/clubb/src/CLUBB_core/hydromet_pdf_parameter_module.F90addsrc/physics/clubb/src/CLUBB_core/Skx_module.F90addsrc/physics/clubb/src/CLUBB_core/new_pdf.F90addsrc/physics/clubb/src/CLUBB_core/advance_xm_wpxp_module.F90addsrc/physics/clubb/src/CLUBB_core/interpolation.F90addsrc/physics/clubb/src/CLUBB_core/grid_class.F90addsrc/physics/clubb/src/CLUBB_core/pdf_closure_module.F90addsrc/physics/clubb/src/CLUBB_core/mono_flux_limiter.F90addsrc/physics/clubb/src/CLUBB_core/clip_explicit.F90addsrc/physics/clubb/src/CLUBB_core/matrix_operations.F90addsrc/physics/clubb/src/CLUBB_core/matrix_solver_wrapper.F90addsrc/physics/clubb/src/CLUBB_core/corr_varnce_module.F90addsrc/physics/clubb/src/CLUBB_core/input_reader.F90addsrc/physics/clubb/src/CLUBB_core/stats_rad_zt_module.F90addsrc/physics/clubb/src/CLUBB_core/clubb_api_module.F90addsrc/physics/clubb/src/CLUBB_core/model_flags.F90addsrc/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90addsrc/physics/clubb/src/CLUBB_core/parameters_tunable.F90addsrc/physics/clubb/src/CLUBB_core/calc_pressure.F90addsrc/physics/clubb/src/CLUBB_core/numerical_check.F90addsrc/physics/clubb/src/CLUBB_core/turbulent_adv_pdf.F90addsrc/physics/clubb/src/CLUBB_core/calendar.F90addsrc/physics/clubb/src/CLUBB_core/new_tsdadg_pdf.F90addsrc/physics/clubb/src/CLUBB_core/sponge_layer_damping.F90addsrc/physics/clubb/src/CLUBB_core/new_hybrid_pdf.F90addsrc/physics/clubb/src/CLUBB_core/lapack_interfaces.F90addsrc/physics/clubb/src/CLUBB_core/diffusion.F90addsrc/physics/clubb/src/CLUBB_core/pdf_utilities.F90addsrc/physics/clubb/src/CLUBB_core/saturation.F90addsrc/physics/clubb/src/CLUBB_core/array_index.F90addsrc/physics/clubb/src/CLUBB_core/diagnose_correlations_module.F90addsrc/physics/clubb/src/CLUBB_core/stats_type_utilities.F90addsrc/physics/clubb/src/CLUBB_core/clubb_precision.F90addsrc/physics/clubb/src/CLUBB_core/tridiag_lu_solver.F90addsrc/physics/clubb/src/CLUBB_core/advance_windm_edsclrm_module.F90addsrc/physics/clubb/src/CLUBB_core/stat_file_module.F90addsrc/physics/clubb/src/CLUBB_core/input_names.F90addsrc/physics/clubb/src/CLUBB_core/mean_adv.F90addsrc/physics/clubb/src/CLUBB_core/mixing_length.F90addsrc/physics/clubb/src/CLUBB_core/lapack_wrap.F90addsrc/physics/clubb/src/CLUBB_core/stats_clubb_utilities.F90addsrc/physics/clubb/src/CLUBB_core/calc_roots.F90addsrc/physics/clubb/src/CLUBB_core/parameters_model.F90src/physics/clubb/src/SILHS/math_utilities.F90src/physics/clubb/src/SILHS/silhs_api_module.F90src/physics/clubb/src/SILHS/latin_hypercube_driver_module.F90src/physics/clubb/src/SILHS/output_2D_samples_module.F90src/physics/clubb/src/SILHS/latin_hypercube_arrays.F90src/physics/clubb/src/SILHS/silhs_importance_sample_module.F90src/physics/clubb/src/SILHS/transform_to_pdf_module.F90src/physics/clubb/src/SILHS/lh_microphys_var_covar_module.F90src/physics/clubb/src/SILHS/est_kessler_microphys_module.F90src/physics/clubb/src/SILHS/generate_uniform_sample_module.F90src/physics/clubb/src/SILHS/parameters_silhs.F90f98829e01d4be09aa54613973f13cc911f0e90031726772851000http://carson.math.uwm.edu/jenkins/user/pickettCole Pickettlarsongroupgithub@gmail.comAutoupdated SILHS 2024-09-19 14:07:31 -0500f98829e01d4be09aa54613973f13cc911f0e9003Autoupdated SILHSaddsrc/physics/clubb/src/SILHS/latin_hypercube_arrays.F90addsrc/physics/clubb/src/SILHS/transform_to_pdf_module.F90addsrc/physics/clubb/src/SILHS/lh_microphys_var_covar_module.F90addsrc/physics/clubb/src/SILHS/est_kessler_microphys_module.F90addsrc/physics/clubb/src/SILHS/generate_uniform_sample_module.F90addsrc/physics/clubb/src/SILHS/latin_hypercube_driver_module.F90addsrc/physics/clubb/src/SILHS/parameters_silhs.F90addsrc/physics/clubb/src/SILHS/output_2D_samples_module.F90addsrc/physics/clubb/src/SILHS/math_utilities.F90addsrc/physics/clubb/src/SILHS/silhs_importance_sample_module.F90addsrc/physics/clubb/src/SILHS/silhs_api_module.F90advance_clubb_core_module.F90fd8b67834697b6fae2a1933b212ba571e5a45e681726773850000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving duplicate definition of edsclr when CLUBB_CAM is defined. 2024-09-19 14:24:10 -0500fd8b67834697b6fae2a1933b212ba571e5a45e68Removing duplicate definition of edsclr when CLUBB_CAM is defined.editadvance_clubb_core_module.F90run_scripts/run_cesm_uwm_coarse_res_r8029_flags.shrun_scripts/run_cesm_uwm.shrun_scripts/run_cesm_uwm_coarse_res.shrun_scripts/run_scam.bash9e0b9d08d8391b8b9bdc8f663a5a20af3f07a97b1726775033000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving shear_sqd from stat list 2024-09-19 14:43:53 -05009e0b9d08d8391b8b9bdc8f663a5a20af3f07a97bRemoving shear_sqd from stat listeditrun_scripts/run_cesm_uwm_coarse_res.sheditrun_scripts/run_scam.basheditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sheditrun_scripts/run_cesm_uwm.shsrc/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90ea3aa127f17975ec10bf857892909ca3ecc245fa1726780037000http://carson.math.uwm.edu/jenkins/user/pickettCole Pickettlarsongroupgithub@gmail.comAutoupdated CLUBB_core Commit 221a4ef55f3752211b191529c8d47fa38db7b3c2 Author: Gunther Huebler Date: Thu Sep 19 14:24:10 2024 -0500 Removing duplicate definition of edsclr when CLUBB_CAM is defined. 2024-09-19 16:07:17 -0500ea3aa127f17975ec10bf857892909ca3ecc245faAutoupdated CLUBB_coreeditsrc/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90advance_clubb_core_module.F90advance_xm_wpxp_module.F90afaafca1b208625a00b7f826cae0d25251d2ad0d1726782540000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRi zm calc6 (#1177) * Ri_zm calc (Part 6) - Implementing calc_Ri_zm CLUBB tocket #1145 Eliminating call to calc_stability_correction in advance_xm_wpxp 1) In advance_xm_wpxp_module.F90: - Eliminated call to calc_stability_correction in calc_xm_wpxp_lhs_terms - stability_correction is now passed through advance_xm_wpxp to calc_xm_wpxp_lhs_terms - Cleaned up input lists 2) In advance_clubb_core: - Adjusted call to advance_xm_wpxp 3) Adjusted spurious_source_test 2024-09-19 16:49:00 -0500afaafca1b208625a00b7f826cae0d25251d2ad0dRi zm calc6 (#1177)editadvance_xm_wpxp_module.F90editadvance_clubb_core_module.F90silhs_api_module.F90transform_to_pdf_module.F90lh_microphys_var_covar_module.F90latin_hypercube_driver_module.F90output_2D_samples_module.F90d52dc47a7c76ddc46b521d0fff0482f25ea91e5e1726848578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comrefactor code to remove compiler warnings for exceeding 100 characters per line and unused variables and parameters (#1179) 2024-09-20 11:09:38 -0500d52dc47a7c76ddc46b521d0fff0482f25ea91e5erefactor code to remove compiler warnings for exceeding 100 characters per line and unused variables and parameters (#1179)editlatin_hypercube_driver_module.F90editsilhs_api_module.F90edittransform_to_pdf_module.F90editlh_microphys_var_covar_module.F90editoutput_2D_samples_module.F90advance_xm_wpxp_module.F90clubb_api_module.F90clip_explicit.F90stats_lh_zt_module.F90mt95.F90stats_type_utilities.F90penta_lu_solver.F90grid_class.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90new_pdf_main.F90advance_helper_module.F90mono_flux_limiter.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90tridiag_lu_solver.F90pdf_closure_module.F90Skx_module.F90adg1_adg2_3d_luhar_pdf.F90matrix_solver_wrapper.F90corr_varnce_module.F90precipitation_fraction.F90diffusion.F90model_flags.F90numerical_check.F90output_netcdf.F90stats_lh_sfc_module.F90parameters_tunable.F90saturation.F90advance_clubb_core_module.F90advance_xp3_module.F90stats_zt_module.F90mean_adv.F90lapack_wrap.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F90sfc_varnce_module.F90af499c027fac8a33da80b1430c7f2f1425d3553a1726848578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comrefactor code to remove compiler warnings for exceeding 100 characters per line and unused variables and parameters (#1179) 2024-09-20 11:09:38 -0500af499c027fac8a33da80b1430c7f2f1425d3553arefactor code to remove compiler warnings for exceeding 100 characters per line and unused variables and parameters (#1179)editadvance_xp2_xpyp_module.F90editdiffusion.F90editcorr_varnce_module.F90editstats_clubb_utilities.F90editmatrix_solver_wrapper.F90editoutput_netcdf.F90editsfc_varnce_module.F90editmodel_flags.F90editadvance_windm_edsclrm_module.F90editnumerical_check.F90editadvance_clubb_core_module.F90editadvance_xm_wpxp_module.F90editstats_rad_zm_module.F90editsaturation.F90editadg1_adg2_3d_luhar_pdf.F90editadvance_helper_module.F90editpdf_closure_module.F90editmt95.F90editclubb_api_module.F90editpenta_lu_solver.F90editsetup_clubb_pdf_params.F90editstats_zt_module.F90editadvance_xp3_module.F90editfill_holes.F90editadvance_wp2_wp3_module.F90editstats_sfc_module.F90editmixing_length.F90editstats_type_utilities.F90editnew_pdf_main.F90editmono_flux_limiter.F90editmean_adv.F90editgrid_class.F90editSkx_module.F90editclip_explicit.F90editlapack_wrap.F90editstats_lh_zt_module.F90editprecipitation_fraction.F90editstats_zm_module.F90edittridiag_lu_solver.F90editparameters_tunable.F90editstats_rad_zt_module.F90editstats_lh_sfc_module.F90run_scripts/run_cesm_uwm_coarse_res_r8029_flags.shjenkins_tests/cam_ne5_gpu_test/Jenkinsfilerun_scripts/set_up_cam_coarse_res.pyrun_scripts/run_scam.bashcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_camcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_camrun_scripts/run_cesm_uwm.shjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfilerun_scripts/set_up_repo.pyjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilejenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfilerun_scripts/run_cesm_uwm_coarse_res.shjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile14465d0ff063729487bd03bf92d05be2516aed121727201973000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking scripts work with new merge and making small tweaks to setup script. 2024-09-24 13:19:33 -050014465d0ff063729487bd03bf92d05be2516aed12Making scripts work with new merge and making small tweaks to setup script.editrun_scripts/run_cesm_uwm.sheditrun_scripts/run_scam.basheditcime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3/user_nl_camaddrun_scripts/set_up_repo.pyeditcime_config/testdefs/testmods_dirs/cam/silhs/user_nl_cameditjenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfileeditjenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfileeditjenkins_tests/cam_ne5_gpu_test/Jenkinsfileeditjenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfiledeleterun_scripts/set_up_cam_coarse_res.pyeditrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sheditrun_scripts/run_cesm_uwm_coarse_res.shrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shd26dd417fac610f6757da0d594e8609e007482fd1727203172000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging error detection method. 2024-09-24 13:39:32 -0500d26dd417fac610f6757da0d594e8609e007482fdChanging error detection method.editrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shrun_scripts/set_up_repo.pyaf9d0edbbeafc2da2d6a6ac50c775a0df1135d0e1727203553000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBug fix 2024-09-24 13:45:53 -0500af9d0edbbeafc2da2d6a6ac50c775a0df1135d0eBug fixeditrun_scripts/set_up_repo.pysilhs_api_module.F90latin_hypercube_driver_module.F90004d3f520a1adab77ee44de70ebc6caca27074eb1727204551000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comreduce compiler warnings (#1180) * refactor code to remove warnings for exceeding 100 characters per line * remove unused variables * remove unused parameters #1174 * fix for the GPU * remove new unused parameters * remove unused dummy arguments * make small changes to reduce compiler warnings * put solve_name back in as input variable to band_solve methods 2024-09-24 14:02:31 -0500004d3f520a1adab77ee44de70ebc6caca27074ebreduce compiler warnings (#1180)editsilhs_api_module.F90editlatin_hypercube_driver_module.F90advance_wp2_wp3_module.F90mixing_length.F90advance_xp2_xpyp_module.F90advance_clubb_core_module.F90clip_explicit.F90advance_xm_wpxp_module.F90clubb_api_module.F90numerical_check.F90stats_clubb_utilities.F90matrix_solver_wrapper.F90advance_windm_edsclrm_module.F90advance_helper_module.F90c3912e04050490382fe3e514cd9e4763ff18ecb81727204551000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comreduce compiler warnings (#1180) * refactor code to remove warnings for exceeding 100 characters per line * remove unused variables * remove unused parameters #1174 * fix for the GPU * remove new unused parameters * remove unused dummy arguments * make small changes to reduce compiler warnings * put solve_name back in as input variable to band_solve methods 2024-09-24 14:02:31 -0500c3912e04050490382fe3e514cd9e4763ff18ecb8reduce compiler warnings (#1180)editadvance_clubb_core_module.F90editclip_explicit.F90editadvance_windm_edsclrm_module.F90editadvance_xp2_xpyp_module.F90editnumerical_check.F90editadvance_helper_module.F90editadvance_xm_wpxp_module.F90editclubb_api_module.F90editmatrix_solver_wrapper.F90editadvance_wp2_wp3_module.F90editmixing_length.F90editstats_clubb_utilities.F90run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.shjenkins_tests/cam_ne5_gpu_test/Jenkinsfilerun_scripts/run_cesm_uwm_coarse_res.shrun_scripts/set_up_repo.pyjenkins_tests/cam_gpu_test/Jenkinsfiled855fb69bb0ce4fae4ee1b2afa0ed5652ab499a11727227179000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating gpu run, ne5 seems broken. 2024-09-24 20:19:39 -0500d855fb69bb0ce4fae4ee1b2afa0ed5652ab499a1Updating gpu run, ne5 seems broken.editrun_scripts/run_cesm_uwm_coarse_res.shdeletejenkins_tests/cam_ne5_gpu_test/Jenkinsfileeditrun_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sheditrun_scripts/set_up_repo.pyaddjenkins_tests/cam_gpu_test/Jenkinsfilejenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfilejenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfile36f561e46f6afa9b836b9ee3223473e6394664aa1727228130000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBug fixes to jenkins scripts. 2024-09-24 20:35:30 -050036f561e46f6afa9b836b9ee3223473e6394664aaBug fixes to jenkins scripts.editjenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfileeditjenkins_tests/cam_scam_ifort_ncar_plot/Jenkinsfilejenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfiled0caad2ed29fd5a740adefedc05dfeacb9ebd8461727237720000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBug fixes to jenkins scripts. 2024-09-24 23:15:20 -0500d0caad2ed29fd5a740adefedc05dfeacb9ebd846Bug fixes to jenkins scripts.editjenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfilerun_scripts/run_cesm_uwm_coarse_res.sh44185129c9d82fc7c19c5c28d3b2da9f5b13953b1727291870000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverting accidental changes. 2024-09-25 14:17:50 -050044185129c9d82fc7c19c5c28d3b2da9f5b13953bReverting accidental changes.editrun_scripts/run_cesm_uwm_coarse_res.shsilhs_api_module.F90latin_hypercube_driver_module.F90034fb232520b1d0f7afa52036f8d25aa53e0d7131727293378000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack. 2024-09-25 14:42:58 -0500034fb232520b1d0f7afa52036f8d25aa53e0d713Removing the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack.editlatin_hypercube_driver_module.F90editsilhs_api_module.F90clubb_api_module.F90advance_xm_wpxp_module.F90clip_explicit.F90stats_lh_zt_module.F90grid_class.F90setup_clubb_pdf_params.F90advance_windm_edsclrm_module.F90advance_helper_module.F90mono_flux_limiter.F90mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90stats_rad_zm_module.F90stats_rad_zt_module.F90calc_pressure.F90precipitation_fraction.F90diffusion.F90pos_definite_module.F90stats_lh_sfc_module.F90parameters_tunable.F90sponge_layer_damping.F90turbulent_adv_pdf.F90advance_xp3_module.F90advance_clubb_core_module.F90stats_zt_module.F90fill_holes.F90stats_sfc_module.F90stats_clubb_utilities.F90stats_zm_module.F90sfc_varnce_module.F90f0871e6ebc1641bac7b34aa169aa92e42a4ff13e1727293378000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack. 2024-09-25 14:42:58 -0500f0871e6ebc1641bac7b34aa169aa92e42a4ff13eRemoving the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack.editstats_lh_sfc_module.F90editstats_lh_zt_module.F90editdiffusion.F90editmixing_length.F90editgrid_class.F90editsfc_varnce_module.F90editsponge_layer_damping.F90editadvance_wp2_wp3_module.F90editpos_definite_module.F90editprecipitation_fraction.F90editadvance_helper_module.F90editsetup_clubb_pdf_params.F90editmono_flux_limiter.F90editadvance_windm_edsclrm_module.F90editstats_clubb_utilities.F90editstats_rad_zm_module.F90editstats_rad_zt_module.F90editstats_zm_module.F90editcalc_pressure.F90editadvance_xp3_module.F90editfill_holes.F90editadvance_clubb_core_module.F90editstats_zt_module.F90editturbulent_adv_pdf.F90editparameters_tunable.F90editadvance_xp2_xpyp_module.F90editclubb_api_module.F90editstats_sfc_module.F90editadvance_xm_wpxp_module.F90editclip_explicit.F90advance_clubb_core_module.F90advance_wp2_wp3_module.F90clubb_api_module.F902ef3f37556bfcf08c474e6953814504db81c3ff01727377555000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove radf variable from CLUBB call For pull request #1183 and ticket #1152. 2024-09-26 14:05:55 -05002ef3f37556bfcf08c474e6953814504db81c3ff0Remove radf variable from CLUBB calleditadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90src/physics/cam/clubb_intr.F905dd36fd72ae068c43b9b49f73b203b09224bb04f1727377834000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove radf variable from CLUBB call (#180) For pull request #180 and ticket larson-group/clubb#1152. 2024-09-26 14:10:34 -05005dd36fd72ae068c43b9b49f73b203b09224bb04fRemove radf variable from CLUBB call (#180)editsrc/physics/cam/clubb_intr.F90githttp://carson.math.uwm.edu/jenkins/user/nusbaumenusbaumehttp://carson.math.uwm.edu/jenkins/user/jetjethttp://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminhttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/gdickergdickerhttp://carson.math.uwm.edu/jenkins/user/jedwardsjedwardshttp://carson.math.uwm.edu/jenkins/user/pickettCole Picketthttp://carson.math.uwm.edu/jenkins/user/peter.hjort.lauritzenpeter.hjort.lauritzenhttp://carson.math.uwm.edu/jenkins/user/juliobjuliobhttp://carson.math.uwm.edu/jenkins/user/bdobbinsbdobbinshttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/rootroothttp://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen42725900+domkesteffenhttp://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm37674341+huebleruwmhttp://carson.math.uwm.edu/jenkins/user/fvittfvitthttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/courtneypcourtneyphttp://carson.math.uwm.edu/jenkins/user/elundgrenelundgrenhttp://carson.math.uwm.edu/jenkins/user/eatoneatonhttp://carson.math.uwm.edu/jenkins/user/jimmie.linjimmie.linhttp://carson.math.uwm.edu/jenkins/user/pelpelhttp://carson.math.uwm.edu/jenkins/user/kateckatechttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/johnjohnhttp://carson.math.uwm.edu/jenkins/user/adamrhsteradamrhsterhttp://carson.math.uwm.edu/jenkins/user/mdfowlermdfowlerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/fischerfischerhttp://carson.math.uwm.edu/jenkins/user/griffinbBrian Griffinhttp://carson.math.uwm.edu/jenkins/user/negin513negin513http://carson.math.uwm.edu/jenkins/user/cacraigcacraighttp://carson.math.uwm.edu/jenkins/user/sunjiansunjianfalse131http://carson.math.uwm.edu/jenkins/view/all/job/branch_cam_test/131/129http://carson.math.uwm.edu/jenkins/view/all/job/branch_cam_test/129/