Started by an SCM change Obtained jenkins_tests/clubb_plot_ifort_debug/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task ‘condella’ is offline ‘malan’ is offline ‘overlie’ is offline Running on Jenkins in /home/jenkins/workspace/clubb_plot_ifort_debug [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_plot_ifort_debug/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision f6b2bf7d9b01b55a68c5101649d8a157ee17921f (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f f6b2bf7d9b01b55a68c5101649d8a157ee17921f # timeout=10 Commit message: "Update README, BUILD.md, and pyplotgen README.md (#1309)" > git rev-list --no-walk 7945eaacac73eb9bbf7dc2b21dd6187c724a8fbf # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load intel netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -- The Fortran compiler identification is IntelLLVM 2023.2.0 -- The C compiler identification is IntelLLVM 2023.2.0 -- The CXX compiler identification is IntelLLVM 2023.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/ifx - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/icx - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/icpx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY -- Build files have been written to: /home/jenkins/workspace/clubb_plot_ifort_debug/build/intel_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_plot_ifort_debug/cmake/toolchains/linux_x86_64_intel.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_plot_ifort_debug/build/intel_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_plot_ifort_debug/build/intel_DEBUG_PRECdouble Running CMake configure... 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object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [796/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [797/913] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [798/913] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [799/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [800/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [801/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [802/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o [803/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [804/913] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [805/913] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a [806/913] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [807/913] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [808/913] Linking Fortran static library src/Radiation/libradiation_lib.a [809/913] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd [810/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [811/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [812/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [813/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [814/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o [815/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [816/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [817/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [818/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [819/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o [820/913] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [821/913] Linking Fortran static library src/Input_fields/libinput_fields_lib.a [822/913] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd [823/913] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd [824/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [825/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [826/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [827/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [828/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [829/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [830/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [831/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [832/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [833/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [834/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [835/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [836/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [837/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o [838/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [839/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [840/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [841/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [842/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [843/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [844/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o [845/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [846/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [847/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [848/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [849/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [850/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [851/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [852/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [853/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [854/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [855/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [856/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [857/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [858/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [859/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [860/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [861/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [862/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [863/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [864/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [865/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [866/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [867/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [868/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [869/913] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [870/913] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a [871/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [872/913] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [873/913] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a [874/913] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [875/913] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a [876/913] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd [877/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [878/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [879/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o [880/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [881/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [882/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [883/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o /home/jenkins/workspace/clubb_plot_ifort_debug/src/Microphys/pdf_hydromet_microphys_wrapper.F90(15): remark #7712: This variable has not been used. [DT_MAIN] itime, dt_main, vert_decorr_coef, & ! In ----------------------^ [884/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [885/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [886/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [887/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [888/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [889/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [890/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [891/913] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [892/913] Linking Fortran static library src/Microphys/libmicrophys_lib.a [893/913] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd [894/913] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd [895/913] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [896/913] Linking Fortran executable src/G_unit_tests [897/913] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [898/913] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_plot_ifort_debug/src/clubb_driver.F90(5867): remark #7712: This variable has not been used. [IUNIT] ( gr, iunit, hydromet_dim, hm_metadata, & ! In --------------------^ [899/913] Linking Fortran static library src/libclubb_driver_lib.a [900/913] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd [901/913] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd [902/913] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd [903/913] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd [904/913] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [905/913] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [906/913] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [907/913] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [908/913] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [909/913] Linking Fortran executable src/clubb_thread_test [910/913] Linking Fortran executable src/clubb_standalone [911/913] Linking Fortran executable src/clubb_driver_test [912/913] Linking Fortran executable src/clubb_tuner [912/913] Install the project... -- Install configuration: "Debug" -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib" -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib" -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib" -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib" -- Installing: /home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_plot_ifort_debug/install/intel_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [92mBuild completed successfully, and all source code checks passed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + run_scripts/run_scm_all.py Performing standard run Using 8 process(es) Cases to run: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara COMPLETE -- bomex COMPLETE -- atex COMPLETE -- arm COMPLETE -- clex9_nov02 COMPLETE -- dycoms2_rf01_fixed_sst COMPLETE -- clex9_oct14 COMPLETE -- dycoms2_rf01 COMPLETE -- dycoms2_rf02_nd COMPLETE -- cgils_s12 COMPLETE -- dycoms2_rf02_do COMPLETE -- dycoms2_rf02_so COMPLETE -- cgils_s11 COMPLETE -- fire COMPLETE -- astex_a209 COMPLETE -- dycoms2_rf02_ds COMPLETE -- cgils_s6 COMPLETE -- gabls3_night COMPLETE -- jun25_altocu COMPLETE -- mpace_b COMPLETE -- mpace_b_silhs COMPLETE -- nov11_altocu COMPLETE -- gabls3 COMPLETE -- rico COMPLETE -- wangara COMPLETE -- rico_silhs COMPLETE -- lba COMPLETE -- gabls2 COMPLETE -- twp_ice COMPLETE -- mpace_a COMPLETE -- arm_97 COMPLETE -- mc3e =================== Runs Complete =================== All cases ran to completion. + mv output cpu_f6b2bf7 + mkdir output [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Plot) [Pipeline] sh + scp -r carson:/home/pub/web_plots/clubb_ifort_plots/master/cur_out . [Pipeline] sh ++ cat cur_out/commit + python postprocessing/pyplotgen/pyplotgen.py -l -c cpu_f6b2bf7 cur_out/cpu_7945eaa -o f6b2bf7_vs_master_7945eaa ******************************************* Welcome to PyPlotGen. ******************************************* Checking for model benchmark output... Benchmark output found in /home/pub/les_and_clubb_benchmark_runs/. ------------------------------------------- Running... ---------- NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading, the total number of panels to be processed may increase as threads complete and begin processing new cases. ---------- Progress: 0 of ? total .png panels complete Progress: 1 of 88 total .png panels complete Progress: 2 of 88 total .png panels complete Progress: 3 of 88 total .png panels complete Progress: 5 of 146 total .png panels complete Progress: 6 of 146 total .png panels complete Progress: 8 of 146 total .png panels complete Progress: 13 of 146 total .png panels complete Progress: 15 of 146 total .png panels complete Progress: 17 of 146 total .png panels complete Progress: 20 of 146 total .png panels complete Progress: 23 of 185 total .png panels complete Progress: 27 of 311 total .png panels complete Progress: 30 of 365 total .png panels complete Progress: 34 of 365 total .png panels complete Progress: 39 of 365 total .png panels complete Progress: 43 of 365 total .png panels complete Progress: 50 of 467 total .png panels complete Progress: 53 of 467 total .png panels complete Progress: 60 of 578 total .png panels complete Progress: 66 of 578 total .png panels complete Progress: 73 of 636 total .png panels complete Progress: 79 of 636 total .png panels complete Progress: 91 of 765 total .png panels complete Progress: 103 of 887 total .png panels complete Progress: 114 of 887 total .png panels complete Progress: 122 of 887 total .png panels complete Progress: 146 of 887 total .png panels complete Progress: 170 of 887 total .png panels complete Progress: 179 of 887 total .png panels complete Progress: 196 of 956 total .png panels complete Progress: 205 of 956 total .png panels complete Progress: 219 of 956 total .png panels complete Progress: 229 of 956 total .png panels complete Progress: 258 of 1076 total .png panels complete Progress: 280 of 1235 total 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582 of 1544 total .png panels complete Progress: 611 of 1544 total .png panels complete Progress: 632 of 1544 total .png panels complete Progress: 652 of 1627 total .png panels complete Progress: 663 of 1627 total .png panels complete Progress: 692 of 1627 total .png panels complete Progress: 704 of 1627 total .png panels complete Progress: 719 of 1627 total .png panels complete Progress: 742 of 1627 total .png panels complete Progress: 763 of 1682 total .png panels complete Progress: 787 of 1682 total .png panels complete Progress: 804 of 1682 total .png panels complete Progress: 814 of 1682 total .png panels complete Progress: 830 of 1738 total .png panels complete Progress: 843 of 1738 total .png panels complete Progress: 871 of 1738 total .png panels complete Progress: 887 of 1738 total .png panels complete Progress: 919 of 1738 total .png panels complete Progress: 949 of 1738 total .png panels complete Progress: 975 of 1738 total .png panels complete Progress: 998 of 1738 total .png panels complete Progress: 1021 of 1738 total .png panels complete Progress: 1046 of 1738 total .png panels complete Progress: 1068 of 1738 total .png panels complete Progress: 1080 of 1738 total .png panels complete Progress: 1098 of 1738 total .png panels complete Progress: 1117 of 1738 total .png panels complete Progress: 1135 of 1738 total .png panels complete Progress: 1159 of 1738 total .png panels complete Progress: 1187 of 1738 total .png panels complete Progress: 1201 of 1738 total .png panels complete Progress: 1217 of 1738 total .png panels complete Progress: 1236 of 1738 total .png panels complete Progress: 1254 of 1738 total .png panels complete ------------------------------------------- ARM: SUCCESS --> Images found. ARM_97: SUCCESS --> Images found. ASTEX_A209: SUCCESS --> Images found. ATEX: SUCCESS --> Images found. BOMEX: SUCCESS --> Images found. CGILS_S11: SUCCESS --> Images found. CGILS_S12: SUCCESS --> Images found. CGILS_S6: SUCCESS --> Images found. CLEX9_NOV02: SUCCESS --> Images found. CLEX9_OCT14: SUCCESS --> Images found. DYCOMS2_RF01: SUCCESS --> Images found. DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found. DYCOMS2_RF02_DO: SUCCESS --> Images found. DYCOMS2_RF02_DS: SUCCESS --> Images found. DYCOMS2_RF02_ND: SUCCESS --> Images found. DYCOMS2_RF02_SO: SUCCESS --> Images found. FIRE: SUCCESS --> Images found. GABLS2: SUCCESS --> Images found. GABLS2_NIGHTLY: SUCCESS --> Images found. GABLS3: SUCCESS --> Images found. GABLS3_NIGHT: SUCCESS --> Images found. JUN25_ALTOCU: SUCCESS --> Images found. LBA: SUCCESS --> Images found. MC3E: SUCCESS --> Images found. MPACE_A: SUCCESS --> Images found. MPACE_B: SUCCESS --> Images found. MPACE_B_SILHS: SUCCESS --> Images found. NOV11_ALTOCU: SUCCESS --> Images found. RICO: SUCCESS --> Images found. RICO_SILHS: SUCCESS --> Images found. TWP_ICE: SUCCESS --> Images found. WANGARA: SUCCESS --> Images found. ------------------------------------------- Output can be viewed at file:///home/jenkins/workspace/clubb_plot_ifort_debug/f6b2bf7_vs_master_7945eaa/index.html with a web browser Pyplotgen ran in 80 seconds. See error.log in the output folder for detailed info including warnings. error.log messages include: 26-06-11 04:17:38.810 proc_id: 115269 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4._netCDF4.Dataset'> [Pipeline] sh + ssh carson 'mkdir -p /home/pub/web_plots/clubb_ifort_plots/master' [Pipeline] sh + scp -r f6b2bf7_vs_master_7945eaa carson:/home/pub/web_plots/clubb_ifort_plots/master [Pipeline] sh + ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_ifort_plots/' /home/pub/web_plots/clubb_ifort_plots/ updated successfully. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Update Master Output) [Pipeline] sh + rm -rf cur_out [Pipeline] sh + mkdir cur_out [Pipeline] sh + mv cpu_f6b2bf7 cur_out [Pipeline] sh + echo f6b2bf7 [Pipeline] sh + ssh carson 'rm -rf /home/pub/web_plots/clubb_ifort_plots/master/cur_out' [Pipeline] sh + scp -r cur_out carson:/home/pub/web_plots/clubb_ifort_plots/master/ [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS