Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -precision single -run_tests
-- Compiling with single precision
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Running CMake configure...
[1/12] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90-pp.f90
[2/12] Generating Fortran dyndep file src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Fortran.dd
[3/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
[4/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[5/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[6/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o
[7/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[8/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o
[9/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[10/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[11/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[12/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[13/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
[14/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[15/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
[16/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o
[17/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[18/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[19/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
[20/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
[21/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
[22/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[23/32] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[24/32] Linking Fortran static library src/CLUBB_core/libclubb_core_lib.a
[25/34] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o
[26/34] Linking Fortran static library src/Microphys/Microphys_utils/libmicrophys_utils_lib.a
[27/39] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[28/39] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[29/39] Linking Fortran static library src/Microphys/KK_microphys/libKK_microphys_lib.a
[30/43] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/silhs_importance_sample_module.F90(912): warning #5462: Global name too long, shortened from: silhs_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER to: s_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER
num_categories_in_cluster = (/ 1, 1, 1, 1, 1, 1, 1, 1 /)
------^
[31/43] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
[32/43] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[33/43] Linking Fortran static library src/SILHS/libsilhs_lib.a
[34/48] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o
[35/48] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
[36/48] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a
[37/48] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[38/48] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o
[39/48] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[40/48] Linking Fortran static library src/Radiation/libradiation_lib.a
[41/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[42/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[43/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[44/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[45/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[46/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[47/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[48/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[49/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[50/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[51/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
[52/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[53/81] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[54/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[55/81] Linking Fortran executable src/G_unit_tests
[56/81] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[57/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[58/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[59/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[60/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[61/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[62/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[63/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[64/81] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[65/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[66/81] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[67/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[68/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[69/81] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[70/81] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[71/81] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[72/81] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/clubb_driver.F90(5575): remark #7712: This variable has not been used. [L_READIOPDATA]
p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
---------------------------------------------------------------^
[73/81] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
[74/81] Linking Fortran static library src/libclubb_driver_lib.a
[75/88] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[76/88] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[77/88] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[78/88] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[79/88] Linking Fortran executable src/clubb_thread_test
[80/88] Linking Fortran executable src/clubb_standalone
[81/88] Linking Fortran executable src/clubb_driver_test
[82/88] Linking Fortran executable src/clubb_standalone_loss
[83/88] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
[84/88] Linking Fortran executable src/clubb_loss_driver_test
[85/88] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[86/88] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[87/88] Linking Fortran executable src/clubb_tuner
[87/88] Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.05 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 1.21 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 1.07 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 1.02 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 1.45 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 1.36 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 1.55 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 1.23 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 1.30 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 0.71 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 2.40 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 13.37 sec
[92mAll tests passed.[0m
