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Start of Pipeline - (51 min in block)
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node - (51 min in block)
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node block - (51 min in block)
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stage - (8.5 sec in block)Declarative: Checkout SCM
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stage block (Declarative: Checkout SCM) - (8.4 sec in block)
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checkout - (8.3 sec in self)
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withEnv - (51 min in block)GIT_BRANCH, GIT_COMMIT, GIT_PREVIOUS_COMMIT, GIT_PREVIOUS_SUCCESSFUL_COMMIT, GIT_URL
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withEnv block - (51 min in block)
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withEnv - (51 min in block)arm97_case, atex_case, case_suffix, commit, branch
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withEnv block - (51 min in block)
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stage - (39 sec in block)Checkout Externals and Copy Custom Files
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stage block (Checkout Externals and Copy Custom Files) - (38 sec in block)
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sh - (38 sec in self)python run_scripts/set_up_repo.py .
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stage - (0.86 sec in block)Sed Commands
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stage block (Sed Commands) - (0.72 sec in block)
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sh - (0.33 sec in self)sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
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sh - (0.32 sec in self)sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
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stage - (0.7 sec in block)Remove Old Output
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stage block (Remove Old Output) - (0.56 sec in block)
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sh - (0.33 sec in self)rm -rf /home/jenkins/cam_output/scratch/${atex_case} /home/jenkins/cam_output/scratch/${arm97_case}
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script - (0.13 sec in block)
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script block - (51 ms in block)
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stage - (11 min in block)Run ATEX
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stage block (Run ATEX) - (11 min in block)
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sh - (11 min in self)source /etc/profile.d/larson-group.sh ulimit -s 8388608 run_scripts/run_scam.bash --case-suffix "${case_suffix}" ATEX
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stage - (36 min in block)Run ARM97 with SILHS
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stage block (Run ARM97 with SILHS) - (36 min in block)
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sh - (36 min in self)source /etc/profile.d/larson-group.sh # ulimit line is here so that we can override the default stack limit so that the program can write larger files properly ulimit -s 8388608 run_scripts/run_scam.bash --case-suffix "${case_suffix}" -s ARM97
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stage - (2 min 5 sec in block)Compile and Run CLUBB
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stage block (Compile and Run CLUBB) - (2 min 5 sec in block)
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sh - (2 min 5 sec in self)source /etc/profile.d/larson-group.sh module load intel netcdf-fortran rm -rf clubb CLUBB git clone https://github.com/larson-group/clubb python3 clubb/compile.py python3 clubb/run_scripts/run_scm.py -out_dir CLUBB atex
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stage - (16 sec in block)Plot
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stage block (Plot) - (16 sec in block)
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sh - (0.31 sec in self)mkdir CAM_CLUBB
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sh - (0.33 sec in self)mv /home/jenkins/cam_output/scratch/${atex_case}/run/*.cam.h0i.* CAM_CLUBB/atex_cam.nc
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sh - (13 sec in self)clubb/postprocessing/pyplotgen/pyplotgen.py -r -l --cam CAM_CLUBB --clubb CLUBB -o ${commit}
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sh - (0.85 sec in self)ssh carson 'mkdir -p /home/pub/web_plots/cam_clubb_plots/clubb_silhs_devel'
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sh - (0.56 sec in self)scp -r afd5bbb carson:/home/pub/web_plots/cam_clubb_plots/clubb_silhs_devel
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sh - (0.56 sec in self)ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/cam_clubb_plots/'
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stage - (6.9 sec in block)Declarative: Post Actions
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stage block (Declarative: Post Actions) - (6.9 sec in block)
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script - (6.7 sec in block)
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script block - (6.7 sec in block)
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sh - (0.56 sec in self)chmod -R 755 /home/jenkins/cam_output/
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${atex_case}/bld/cesm.bldlog.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${atex_case}/bld/atm.bldlog.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${atex_case}/run/cesm.log.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${atex_case}/run/atm.log.*.gz
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sh - (0.35 sec in self)cat /home/jenkins/cam_output/scratch/${atex_case}/bld/cesm.bldlog.*
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sh - (0.54 sec in self)cat /home/jenkins/cam_output/scratch/${atex_case}/bld/atm.bldlog.*
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sh - (0.33 sec in self)cat /home/jenkins/cam_output/scratch/${atex_case}/run/cesm.log.*
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sh - (0.37 sec in self)cat /home/jenkins/cam_output/scratch/${atex_case}/run/atm.log.*
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${arm97_case}/bld/cesm.bldlog.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${arm97_case}/bld/atm.bldlog.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${arm97_case}/run/cesm.log.*.gz
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sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/${arm97_case}/run/atm.log.*.gz
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sh - (0.34 sec in self)cat /home/jenkins/cam_output/scratch/${arm97_case}/bld/cesm.bldlog.*
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sh - (0.55 sec in self)cat /home/jenkins/cam_output/scratch/${arm97_case}/bld/atm.bldlog.*
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sh - (0.35 sec in self)cat /home/jenkins/cam_output/scratch/${arm97_case}/run/cesm.log.*
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sh - (0.53 sec in self)cat /home/jenkins/cam_output/scratch/${arm97_case}/run/atm.log.*
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