+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh
----- Case Setup -----
Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is Historic transient
ATM component is CAM cam7 physics:CAM mid top model
LND component is clm6.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01
Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE
Machine is larson-group
Pes setting: grid match is a%ne3np4
Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7
Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes setting: excl_stride is {}
Pes other settings: {}
Pes other settings append: {}
Pes comments: none
setting additional fields from config_pes: {}, append {}
Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP
Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp']
Using project from config_machines.xml: none
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-3148-g895d4ea4b
Batch_system_type is none
Creating Case directory /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
WARNING: Macros of the form COMPILER_MACHINE.cmake are deprecated and should be replaced with the form MACHINE_COMPILER.cmake
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Writing case.cupid script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.cupid
Creating file case.cupid
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Compile -----
Building case in directory /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2026-07-11 03:17:07 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in
2026-07-11 03:17:07 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml
2026-07-11 03:17:07 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml
RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all
FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
output: 486 1 486 1 1 roundrobin square-ice
2026-07-11 03:17:08 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2026-07-11 03:17:08 rof
Create namelist for component mosart
Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml
2026-07-11 03:17:08 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2026-07-11 03:17:08 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2026-07-11 03:17:08 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2026-07-11 03:17:08 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF']
libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS']
Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/gptl.bldlog.260711-031707
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/build_scripts/buildlib.gptl
Building pio with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/pio.bldlog.260711-031707
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/csm_share.bldlog.260711-031707
Calling /home/jenkins/workspace/cam_gpu_test/share/buildlib.csm_share
Build script /home/jenkins/workspace/cam_gpu_test/libraries/FTorch/buildlib for component FTorch not found.
Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/CDEPS.bldlog.260711-031707
Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/cime_config/buildlib
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/lnd.bldlog.260711-031707
clm built in 854.853687 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/atm.bldlog.260711-031707
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/ice.bldlog.260711-031707
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/ocn.bldlog.260711-031707
- Building rof Library
Building rof with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/rof.bldlog.260711-031707
docn built in 0.582031 seconds
mosart built in 91.562657 seconds
cice built in 262.627588 seconds
cam built in 1073.105621 seconds
Building cesm from /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.bldlog.260711-031707
Total build time: 2363.861790 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run configuration -----
----- Run Submission -----
2026-07-11 03:56:34 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in
2026-07-11 03:56:34 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml
2026-07-11 03:56:35 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml
RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all
FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
output: 486 1 486 1 1 roundrobin square-ice
2026-07-11 03:56:35 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2026-07-11 03:56:35 rof
Create namelist for component mosart
Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml
2026-07-11 03:56:35 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2026-07-11 03:56:35 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2026-07-11 03:56:35 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2026-07-11 03:56:35 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/mosart.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
2026-07-11 03:56:36 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in
2026-07-11 03:56:37 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml
2026-07-11 03:56:37 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml
RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all
FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc
output: 486 1 486 1 1 roundrobin square-ice
2026-07-11 03:56:37 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2026-07-11 03:56:37 rof
Create namelist for component mosart
Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml
2026-07-11 03:56:37 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2026-07-11 03:56:37 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2026-07-11 03:56:37 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2026-07-11 03:56:37 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF']
-------------------------------------------------------------------------
- Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run
- Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata
- Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun -np 1 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.exe >> cesm.log.$LID 2>&1
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Submitted job case.run with id None
Success!
