Started by an SCM change Obtained jenkins_tests/cam_gpu_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_gpu_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_gpu_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 15e88d15a1d7fa8d7ab5761e084ebc1874e0bf29 Author: Trevor-Hancock5 Date: Mon Jul 6 16:09:33 2026 -0500 Remove blank line to test git update scripts" > git rev-list --no-walk dd5bb835c960303ee3be904d84326d4e2f8c7e44 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. ccs_config up to date. fms up to date. Recursively checking out submodules of fms cdeps up to date. Recursively checking out submodules of cdeps share up to date. tuv-x up to date. parallelio up to date. cmeps up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD Recursively checking out submodules of HEMCO cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm Recursively checking out submodules of src Recursively checking out submodules of fates cime up to date. Recursively checking out submodules of cime Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc /home/jenkins/cam_output/caseroot/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Running ne3 with OpenACC) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3141-gd0a7b41dc Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc WARNING: Macros of the form COMPILER_MACHINE.cmake are deprecated and should be replaced with the form MACHINE_COMPILER.cmake Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_gpu_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc sharedlib_only is False model_only is False Generating component namelists as part of build 2026-07-07 03:17:03 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in 2026-07-07 03:17:03 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml 2026-07-07 03:17:03 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc output: 486 1 486 1 1 roundrobin square-ice 2026-07-07 03:17:04 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-07-07 03:17:04 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml 2026-07-07 03:17:04 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-07-07 03:17:04 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-07-07 03:17:04 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-07-07 03:17:04 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/gptl.bldlog.260707-031702 Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/pio.bldlog.260707-031702 Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/csm_share.bldlog.260707-031702 Calling /home/jenkins/workspace/cam_gpu_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_gpu_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/CDEPS.bldlog.260707-031702 Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/lnd.bldlog.260707-031702 clm built in 821.436376 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/atm.bldlog.260707-031702 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/ice.bldlog.260707-031702 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/ocn.bldlog.260707-031702 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/rof.bldlog.260707-031702 docn built in 0.898974 seconds mosart built in 110.978504 seconds cice built in 242.333083 seconds cam built in 848.407666 seconds Building cesm from /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.bldlog.260707-031702 Total build time: 2122.721902 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- ----- Run Submission ----- 2026-07-07 03:52:29 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in 2026-07-07 03:52:29 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml 2026-07-07 03:52:30 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc output: 486 1 486 1 1 roundrobin square-ice 2026-07-07 03:52:30 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-07-07 03:52:30 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml 2026-07-07 03:52:30 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-07-07 03:52:30 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-07-07 03:52:30 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-07-07 03:52:30 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc 2026-07-07 03:52:31 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_gpu_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/atm_in 2026-07-07 03:52:31 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_gpu_test/components/clm//cime_config/buildnml 2026-07-07 03:52:32 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_gpu_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_gpu_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_gpu_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 1 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc output: 486 1 486 1 1 roundrobin square-ice 2026-07-07 03:52:32 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_gpu_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-07-07 03:52:32 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_gpu_test/components/mosart//cime_config/buildnml 2026-07-07 03:52:32 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-07-07 03:52:32 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-07-07 03:52:32 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_gpu_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-07-07 03:52:32 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_gpu_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/UWM_FHISTC_MTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.exe >> cesm.log.$LID 2>&1 check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/cesm.bldlog.*.gz: No such file or directory [Pipeline] echo WARNING: One or more of the build logs were not zipped, this means compilation did not finish [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/cesm.log.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/run/cesm.log.*.gz: No such file or directory [Pipeline] echo WARNING: One or more of the run logs were not zipped, this means the code did not run to completion [Pipeline] sh + cat '/home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/atm.bldlog.*' cat: '/home/jenkins/cam_output/scratch/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc/bld/atm.bldlog.*': No such file or directory [Pipeline] echo WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS