Started by user Peter Roels Checking out git https://github.com/larson-group/sam_clubb.git into /home/jenkins/workspace/branch_sam_test@script/8eae8d66d73008442543e13bda4bcc86d0ed492274bffa761cee9307d1eb89cb to read jenkins_tests/sam_clubb_pgi_build/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_sam_test@script/8eae8d66d73008442543e13bda4bcc86d0ed492274bffa761cee9307d1eb89cb/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9cb0c7312d9f7525696ee0fb605c83118548dc3d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9cb0c7312d9f7525696ee0fb605c83118548dc3d # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" > git rev-list --no-walk 9cb0c7312d9f7525696ee0fb605c83118548dc3d # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_sam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_sam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9cb0c7312d9f7525696ee0fb605c83118548dc3d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9cb0c7312d9f7525696ee0fb605c83118548dc3d # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_2D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_3D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_STAT ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOVIES ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES if ! ( -d /home/jenkins/workspace/branch_sam_test/RESTART ) mkdir /home/jenkins/workspace/branch_sam_test/RESTART mkdir /home/jenkins/workspace/branch_sam_test/RESTART if ! ( -d /home/jenkins/workspace/branch_sam_test/OBJ ) mkdir /home/jenkins/workspace/branch_sam_test/OBJ mkdir /home/jenkins/workspace/branch_sam_test/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/branch_sam_test/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/branch_sam_test/OBJ OBJ cat if ( -e /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/branch_sam_test/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/branch_sam_test/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/clubb_precision.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfixed -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/MISR_simulator.f /opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/error_code.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/model_flags.F90; -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler nvfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:701: MISR_simulator.o] Error 1 gmake: *** Waiting for unfinished jobs.... -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler nvfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:699: clubb_precision.o] Error 1 -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler nvfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler nvfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:699: model_flags.o] Error 1 gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:699: error_code.o] Error 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cat runsam.log cat: runsam.log: No such file or directory [Pipeline] echo SAM did not create a log. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE