Started by user Keegan Rhodes
Checking out git <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a> into /home/jenkins/workspace/branch_sam_test@script to read jenkins_tests/sam_clubb_silhs_gfortran_build/Jenkinsfile
The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_sam_test@script/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a> # timeout=10
Cleaning workspace
 &gt; git rev-parse --verify HEAD # timeout=10
Resetting working tree
 &gt; git reset --hard # timeout=10
 &gt; git clean -fdx # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --progress <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/flag_removal^{commit} # timeout=10
Checking out Revision 1dd50040538304aedb33eb02f2a1602ee539a95b (refs/remotes/origin/flag_removal)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 1dd50040538304aedb33eb02f2a1602ee539a95b # timeout=10
Commit message: "Commiting to test host models"
 &gt; git rev-list --no-walk 1dd50040538304aedb33eb02f2a1602ee539a95b # timeout=10
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
<span class="pipeline-node-3">Running on Jenkins in /home/jenkins/workspace/branch_sam_test@2
</span>[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
<span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a>
 &gt; git init /home/jenkins/workspace/branch_sam_test@2 # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --progress <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/sam_clubb.git'>https://github.com/larson-group/sam_clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/flag_removal^{commit} # timeout=10
Checking out Revision 1dd50040538304aedb33eb02f2a1602ee539a95b (refs/remotes/origin/flag_removal)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 1dd50040538304aedb33eb02f2a1602ee539a95b # timeout=10
Commit message: "Commiting to test host models"
</span>[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Edit Makefile)
[Pipeline] sh
<span class="pipeline-node-14">+ sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile
+ vim Makefile '+%s/# {nightly gfortran} DO NOT REMOVE THIS LINE\n#ifeq ($(PLATFORM),Linux)\nifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly gfortran} DO NOT REMOVE THIS LINE\rifeq ($(PLATFORM),Linux)\r#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall
Vim: Warning: Output is not to a terminal
Vim: Warning: Input is not from a terminal
[m[m[0m[H[2J[24;1H"Makefile" 707L, 24342C
"Makefile" 707L, 24342C written
+ vim Makefile '+%s/# {nightly pgi} DO NOT REMOVE THIS LINE\nifeq ($(PLATFORM),Linux)\n#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly pgi} DO NOT REMOVE THIS LINE\r#ifeq ($(PLATFORM),Linux)\rifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall
Vim: Warning: Output is not to a terminal
Vim: Warning: Input is not from a terminal
[m[m[0m[H[2J[24;1H"Makefile" 707L, 24342C
"Makefile" 707L, 24342C written
</span>[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Edit Default Case)
[Pipeline] sh
<span class="pipeline-node-19">+ sed -i 's/nstop.*/nstop   = 6,/g' DYCOMS_RF02/prm
</span>[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile)
[Pipeline] sh
<span class="pipeline-node-24">+ ./Build
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OUT_2D ) mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_2D
mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_2D
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OUT_3D ) mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_3D
mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_3D
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OUT_MOMENTS ) mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_MOMENTS
mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_MOMENTS
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OUT_STAT ) mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_STAT
mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_STAT
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OUT_MOVIES ) mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_MOVIES
mkdir /home/jenkins/workspace/branch_sam_test@2/OUT_MOVIES
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/RESTART ) mkdir /home/jenkins/workspace/branch_sam_test@2/RESTART
mkdir /home/jenkins/workspace/branch_sam_test@2/RESTART
if ! ( -d /home/jenkins/workspace/branch_sam_test@2/OBJ ) mkdir /home/jenkins/workspace/branch_sam_test@2/OBJ
mkdir /home/jenkins/workspace/branch_sam_test@2/OBJ
if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/branch_sam_test@2/OUT_2D OUT_2D
if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/branch_sam_test@2/OUT_3D OUT_3D
if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/branch_sam_test@2/OUT_MOMENTS OUT_MOMENTS
if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/branch_sam_test@2/OUT_STAT OUT_STAT
if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/branch_sam_test@2/OUT_MOVIES OUT_MOVIES
if ! ( -d RESTART ) ln -s /home/jenkins/workspace/branch_sam_test@2/RESTART RESTART
if ! ( -d OBJ ) ln -s /home/jenkins/workspace/branch_sam_test@2/OBJ OBJ
cat
if ( -e /home/jenkins/workspace/branch_sam_test@2/OBJ/MICRO_RAD_OPTIONS ) then
mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/branch_sam_test@2/OBJ/MICRO_RAD_OPTIONS
cd /home/jenkins/workspace/branch_sam_test@2/OBJ
if ( ! ( -e Filepath ) ) then
cat
endif
gmake -j4 -f /home/jenkins/workspace/branch_sam_test@2/Makefile
cat: Srcfiles: No such file or directory
/home/jenkins/workspace/branch_sam_test@2/SRC/SCRIPT/mkSrcfiles &gt; Srcfiles
/home/jenkins/workspace/branch_sam_test@2/SRC/SCRIPT/mkDepends Filepath Srcfiles &gt; Depends
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/model_flags.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/error_code.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/clubb_precision.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/SIMULATORS/MISR_simulator.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/parameter_indices.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/domain.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advection.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/shr_kind_mod.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/array_index.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stat_file_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/lapack_interfaces.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/endian.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/input_names.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/mt95.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/sgs_params.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/latin_hypercube_arrays.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/parameters_silhs.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/atmosphere.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/shr_orb_mod.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/code_timer_module.F90;
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/cstuff.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dasum.f
/home/jenkins/workspace/branch_sam_test@2/SRC/cstuff.c: In function ‘systemf_’:
/home/jenkins/workspace/branch_sam_test@2/SRC/cstuff.c:37:36: warning: implicit declaration of function ‘system’; did you mean ‘systemf’? [-Wimplicit-function-declaration]
 void systemf (const char *string) {system(string);}
                                    ^~~~~~
                                    systemf
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/daxpy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dcopy.f
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dsyr2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dsyr2k.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dsyrk.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dsytd2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dsytrd.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dtbsv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dtrmm.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dtrmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/dtrsm.f
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/f_wrappers.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/fft.f90;
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/get_cpustamp.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/get_thread_num.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/SIMULATORS/icarus.F
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/idamax.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/ieeeck.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/iladlc.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/iladlr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/ilaenv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ilaslc.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ilaslr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SIMULATORS/modis_simulator.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_double/iparmq.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/isamax.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_shared/lsame.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/quicksort.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/random.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sasum.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/sat.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/saxpy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/scopy.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sdot.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbcon.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbequ.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbrfs.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbsv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sgbsvx.f
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slartg.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slascl.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slaset.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slasr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slasrt.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slassq.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slaswp.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slatbs.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/slatrd.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/snrm2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sorg2l.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sorg2r.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sorgql.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sorgqr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sorgtr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/spoequ.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/spotrf.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/spotrf2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/srscl.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sscal.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssteqr.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssterf.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/sswap.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssyev.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssymv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssyr2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssyr2k.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssyrk.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssytd2.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/ssytrd.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/stbsv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/strmm.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/strmv.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_single/strsm.f
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_error.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_initialize.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_pclstr.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_pr.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_reset.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_setoption.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stamp.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_start.c
gcc -c -DLINUX   -I/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING  /home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_rank_to_index.f90;
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c: In function ‘t_stop’:
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c:148:2: warning: implicit declaration of function ‘printf’ [-Wimplicit-function-declaration]
  printf ("t_stop: negative delta =&gt; probable counter overflow. "
  ^~~~~~
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c:148:2: warning: incompatible implicit declaration of built-in function ‘printf’
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c:148:2: note: include ‘&lt;stdio.h&gt;’ or provide a declaration of ‘printf’
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c:10:1:
+#include &lt;stdio.h&gt;
 
/home/jenkins/workspace/branch_sam_test@2/SRC/TIMING/t_stop.c:148:2:
  printf ("t_stop: negative delta =&gt; probable counter overflow. "
  ^~~~~~
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test@2/SRC/LAPACK/Lapack_shared/xerbla.f
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/constants_clubb.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/grid_config.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_type.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/lapack_wrap.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/index_mapping.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/calendar.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/clip_semi_implicit.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/sigma_sqd_w_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/hydromet_pdf_parameter_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/matrix_operations.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/diagnose_correlations_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/compute_correlation_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/tracers.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/rad.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/math_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/generate_uniform_sample_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/transform_to_pdf_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/bound_exchange.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/boundaries.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/cam_rad_parameterizations.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/compress3D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/header.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/pressure.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_sw.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_u2.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_v2.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_w2w3.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wu.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_varscalar.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_assign_bnd.f90;
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:48:67:

/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:48:67:

                 v_curr_t(i,j,k) = 0.5 * ( v_curr(i,j,k) + v_curr(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:48:67:

/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:48:67:

                 v_curr_t(i,j,k) = 0.5 * ( v_curr(i,j,k) + v_curr(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:49:67:

/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:49:67:

                 v_prev_t(i,j,k) = 0.5 * ( v_prev(i,j,k) + v_prev(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:49:67:

/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:46:23:

         do j = 1, ny, 1
                       2                                            
/home/jenkins/workspace/branch_sam_test@2/SRC/stat_covar_wv.F90:49:67:

                 v_prev_t(i,j,k) = 0.5 * ( v_prev(i,j,k) + v_prev(i,j+1,k) )
                                                                   1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_exchange.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_init.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_ranks.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/task_util_MPI.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/utils.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/interpolation.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/file_functions.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/Nc_Ncn_eqns.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/T_in_K_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/abcoefs.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/ppgrid.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/vars.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/calc_roots.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/new_hybrid_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/pdf_parameter_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/saturation.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/pdf_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_variables.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/input_reader.F90;
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:49:8:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:49:8:

    fu(i,j,k)=dy25*(v(i,jc,k)+v(ib,jc,k))*(u(i,j,k)+u(i,jc,k))
        1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:49:46:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                                
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:49:46:

    fu(i,j,k)=dy25*(v(i,jc,k)+v(ib,jc,k))*(u(i,j,k)+u(i,jc,k))
                                              1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:8:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:8:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
        1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:33:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                   
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:33:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:44:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                              
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:50:44:

    fv(i,j,k)=dy25*(v(i,jc,k)+v(i,j,k))*(v(i,j,k)+v(i,jc,k))
                                            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:51:8:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:51:8:

    fw(i,j,k)=dy25*(v(i,jc,k)*rho(k)*adz(k)+ &amp;
        1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:52:49:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:45:14:

  do j = 0, ny
              2                                   
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_xy.f90:52:49:

              v(i,jc,kcu)*rho(kcu)*adz(kcu))*(w(i,j,kc)+w(i,jc,kc))
                                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/silhs_importance_sample_module.F90;
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:42:35:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:39:10:

  do j=1,ny
          2                         
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:42:35:

    fvz(i,j,k) = rhoi*(w(i,j,k)+w(i,j-1,k))*(v(i,j,k)+v(i,j,kb))
                                   1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:42:35:

/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:39:10:

  do j=1,ny
          2                         
/home/jenkins/workspace/branch_sam_test@2/SRC/advect2_mom_z.f90:42:35:

    fvz(i,j,k) = rhoi*(w(i,j,k)+w(i,j-1,k))*(v(i,j,k)+v(i,j,kb))
                                   1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/aer_optics.f90;
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/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/output_grads.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/corr_varnce_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/est_kessler_microphys_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/gffgch.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/radae.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/radcswmx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/wrap_nf.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/LY93_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/parameters_tunable.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/new_tsdadg_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/new_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/calc_pressure.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/diffusion.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/sponge_layer_damping.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_type_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/mean_adv.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/pos_definite_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/turbulent_adv_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/lh_microphys_var_covar_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/Skx_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/parameters_model.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/new_pdf_main.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/fill_holes.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_lh_zt_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_zm_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_rad_zm_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_sfc_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_zt_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/output_netcdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_rad_zt_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_lh_sfc_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/mono_flux_limiter.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_xp3_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/precipitation_fraction.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/output_2D_samples_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/rad_restart.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/radclwmx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/adg1_adg2_3d_luhar_pdf.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/new_hybrid_pdf_main.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/numerical_check.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/clip_explicit.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_helper_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/stats_clubb_utilities.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/latin_hypercube_driver_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/pdf_closure_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_windm_edsclrm_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_wp2_wp3_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_xm_wpxp_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/mixing_length.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/sfc_varnce_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_xp2_xpyp_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/setup_clubb_pdf_params.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/SILHS/silhs_api_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/advance_clubb_core_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/CLUBB/clubb_api_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/params.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_silhs_vars.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubbvars.F90;
/home/jenkins/workspace/branch_sam_test@2/SRC/params.F90:102:0:

 #endif UWM_MISC
 
Warning: extra tokens at end of #endif directive
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/calc_vars_util.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/MICRO_M2005_UWM/module_mp_graupel.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/compute_chi_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/advect_mom.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar2D.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90;
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:80:13:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:78:22:

      do j=ny+1,dimy2_v
                      2
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:80:13:

          v(i,j,k) = 0.
             1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:101:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:101:23:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:101:33:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:101:33:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:32:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:42:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:102:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:103:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:103:23:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:103:33:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:103:33:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:32:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:42:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:95:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:104:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:26:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2            
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:26:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:38:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:38:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                      1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:54:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                                        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:54:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                                      1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:64:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:112:14:

   do j=-1,nyp2
              2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:114:64:

     uuu(i,j,k)=max(0.,u(i,j,k))*f(i-1,j,k)+min(0.,u(i,j,k))*f(i,j,k)
                                                                1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:26:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2            
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:26:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                      
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (-2 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                      
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:36:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:54:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                                        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:54:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                                      1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:64:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:120:14:

   do j=-1,nyp3
              2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:122:64:

     vvv(i,j,k)=max(0.,v(i,j,k))*f(i,j-1,k)+min(0.,v(i,j,k))*f(i,j,k)
                                                                1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:26:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2            
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:26:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                          1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                      
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:36:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                    1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:53:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:53:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                                     1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:63:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:129:14:

   do j=-1,nyp2
              2                                                 
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:131:63:

     www(i,j,k)=max(0.,w(i,j,k))*f(i,j,kb)+min(0.,w(i,j,k))*f(i,j,k)
                                                               1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:10:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:10:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &amp;
          1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:19:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2     
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:19:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &amp;
                   1
Warning: Array reference at (1) out of bounds (-1 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:56:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:146:14:

   do j=-1,nyp2
              2                                          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:148:56:

       f(i,j,k)=f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &amp;
                                                        1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:27:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:27:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &amp;
                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:36:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &amp;
                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:45:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:164:45:

     uuu(i,j,k)=andiff(f(ib,j,k),f(i,j,k),u(i,j,k),irho(k)) &amp;
                                             1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:23:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:34:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                     
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:34:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &amp;
                                  1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:64:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:166:64:

                    u(i,j,k), v(ib,j,k)+v(ib,jc,k)+v(i,jc,k)+v(i,j,k)) &amp;
                                                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:31:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:31:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &amp;
                               1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:41:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                            
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:41:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &amp;
                                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:52:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &amp;
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:62:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                 
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:167:62:

               +across(dd*(f(ib,j,kc)+f(i,j,kc)-f(ib,j,kb)-f(i,j,kb)), &amp;
                                                              1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:23:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:34:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                     
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:34:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                  1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:44:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                               
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:44:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:54:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                         
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:54:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                                      1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:63:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:159:13:

   do j=0,nyp1
             2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:168:63:

                    u(i,j,k), w(ib,j,k)+w(ib,j,kc)+w(i,j,k)+w(i,j,kc))) *irho(k)
                                                               1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:182:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:182:36:

     vvv(i,j,k)=andiff(f(i,jb,k),f(i,j,k),v(i,j,k),irho(k)) &amp;
                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:182:45:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:182:45:

     vvv(i,j,k)=andiff(f(i,jb,k),f(i,j,k),v(i,j,k),irho(k)) &amp;
                                             1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:183:39:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:183:39:

               -(across(f(ic,jb,k)+f(ic,j,k)-f(ib,jb,k)-f(ib,j,k), &amp;
                                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:183:60:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                               
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:183:60:

               -(across(f(ic,jb,k)+f(ic,j,k)-f(ib,jb,k)-f(ib,j,k), &amp;
                                                            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:23:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:43:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:43:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &amp;
                                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:53:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:184:53:

                    v(i,j,k), u(i,jb,k)+u(i,j,k)+u(ic,j,k)+u(ic,jb,k)) &amp;
                                                     1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:185:42:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:185:42:

                +across(dd*(f(i,jb,kc)+f(i,j,kc)-f(i,jb,kb)-f(i,j,kb)), &amp;
                                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:185:63:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:185:63:

                +across(dd*(f(i,jb,kc)+f(i,j,kc)-f(i,jb,kb)-f(i,j,kb)), &amp;
                                                               1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:23:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:43:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:43:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:177:13:

   do j=0,nyp2
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:186:52:

                    v(i,j,k), w(i,jb,k)+w(i,j,k)+w(i,j,kc)+w(i,jb,kc))) *irho(k)
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:26:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:26:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &amp;
                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:36:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:36:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &amp;
                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:45:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:200:45:

     www(i,j,k)=andiff(f(i,j,kb),f(i,j,k),w(i,j,k),irhow(k)) &amp;
                                             1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:27:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:27:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &amp;
                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:38:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                         
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:38:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &amp;
                                      1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:48:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:48:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &amp;
                                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:59:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:201:59:

              -(across(f(ic,j,kb)+f(ic,j,k)-f(ib,j,kb)-f(ib,j,k), &amp;
                                                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:21:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:21:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &amp;
                     1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:31:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:31:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &amp;
                               1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:41:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                            
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:41:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &amp;
                                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:51:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                      
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:51:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &amp;
                                                   1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:61:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                                
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:202:61:

                  w(i,j,k), u(i,j,kb)+u(i,j,k)+u(ic,j,k)+u(ic,j,kb)) &amp;
                                                             1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:21:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:21:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                     1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:31:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:31:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                               1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:62:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:194:13:

   do j=0,nyp1
             2                                                 
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:204:62:

                  w(i,j,k), v(i,j,kb)+v(i,jc,kb)+v(i,jc,k)+v(i,j,k))) *irho(k)
                                                              1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:224:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:224:23:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:224:33:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:224:33:

     mx(i,j,k)=max(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:32:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:42:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:225:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mx(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:226:23:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2          
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:226:23:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                       1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:226:33:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                    
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:226:33:

     mn(i,j,k)=min(f(ib,j,k),f(ic,j,k),f(i,jb,k), &amp;
                                 1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:32:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                   
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:32:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:42:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                             
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:42:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                          1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:52:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:218:13:

   do j=0,nyp1
             2                                       
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:227:52:

                   f(i,jc,k),f(i,j,kb),f(i,j,kc),f(i,j,k),mn(i,j,k))
                                                    1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:238:37:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:234:13:

   do j=0,nyp1
             2                        
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:238:37:

      mx(i,j,k)=rho(k)*(mx(i,j,k)-f(i,j,k))/ &amp;
                                     1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:242:27:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:234:13:

   do j=0,nyp1
             2              
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:242:27:

      mn(i,j,k)=rho(k)*(f(i,j,k)-mn(i,j,k))/ &amp;
                           1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:287:10:

  do j=1,ny
          2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

    f(i,j,k)=max(0.,f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &amp;
                                                            1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:287:10:

  do j=1,ny
          2                                                  
/home/jenkins/workspace/branch_sam_test@2/SRC/ADV_MPDATA/advect_scalar3D.f90:294:60:

    f(i,j,k)=max(0.,f(i,j,k) -(uuu(i+1,j,k)-uuu(i,j,k)+vvv(i,j+1,k)-vvv(i,j,k) &amp;
                                                            1
Warning: Array reference at (1) out of bounds (2 &gt; 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/buoyancy.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/simple_ocean.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/landflx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_moments.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/movies.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/readiopdata_module.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/oceflx.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/precip_fall.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/press_grad.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/press_rhs.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/pressure_big.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/pressure_orig.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/pressz.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/printout.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/rad_simple.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/rad_simple_smoke.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/rad_simple_uwm.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/setforcing.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/setgrid.f90;
/home/jenkins/workspace/branch_sam_test@2/SRC/setgrid.f90:78:12:

/home/jenkins/workspace/branch_sam_test@2/SRC/setgrid.f90:75:10:

  do j=0,ny
          2  
/home/jenkins/workspace/branch_sam_test@2/SRC/setgrid.f90:78:12:

      fcorzy(j) = 0.
            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2)
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/stat_sw1.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/RAD_CAM/traceini.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/uvw.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/write_fields2D.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/hbuffer.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/hbuf_conditionals_init.f90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/MICRO_M2005_UWM/microphysics.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/stat_clubb.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  -Wall -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic  /home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/damping.F90;
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90 -c   -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -ffree-line-length-0 -fcheck=all -I/usr/local/mpi/MPICH-3.3.1-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DSILHS -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/branch_sam_test@2/SRC/forcing.F90;
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/stat_clubb.F90:207:32:

         lh_rt_weighted(:,:,k) = lh_rt_weighted(:,:,k) &amp;
                                1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/stat_clubb.F90:209:32:

         lh_t_weighted(:,:,k)  = lh_t_weighted(:,:,k) &amp;
                                1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/stat_clubb.F90:213:47:

           X_nl_all_levs_weighted(:,:,k,ivar) = X_nl_all_levs_weighted(:,:,k,ivar) &amp;
                                               1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/stat_clubb.F90:163:8:

     use microphysics, only: &amp;
        1
Warning: Unused module variable ‘mkname’ which has been explicitly imported at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1812:51:

                  clubb_config_flags%l_single_C2_Skw, &amp; ! In
                                                   1
Error: ‘l_single_c2_skw’ at (1) is not a member of the ‘clubb_config_flags_type’ structure
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1853:73:

                                        clubb_config_flags%l_single_C2_Skw &amp; ! In
                                                                         1
Error: ‘l_single_c2_skw’ at (1) is not a member of the ‘clubb_config_flags_type’ structure
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1488:32:

         do indx = 1, edsclr_dim, 1
                                1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1497:30:

         do indx = 1, sclr_dim, 1
                              1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1916:34:

           do indx = 1, edsclr_dim
                                  1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:1922:31:

           do indx = 1, sclr_dim
                               1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:557:90:

                                              l_use_tke_in_wp3_pr_turb_term ) ! Intent(out)
                                                                                          1
Error: More actual than formal arguments in procedure call at (1)
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:615:83:

                                                  clubb_config_flags ) ! Intent(out)
                                                                                   1
Error: Type mismatch in argument ‘clubb_config_flags’ at (1); passed LOGICAL(4) to TYPE(clubb_config_flags_type)
/home/jenkins/workspace/branch_sam_test@2/SRC/SGS_CLUBB/clubb_sgs.F90:899:28:

       do indx = 1, sclr_dim, 1
                            1
Warning: DO loop at (1) will be executed zero times [-Wzerotrip]
gmake: *** [/home/jenkins/workspace/branch_sam_test@2/Makefile:699: clubb_sgs.o] Error 1
gmake: *** Waiting for unfinished jobs....
</span>[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run SAM)
Stage "Run SAM" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
<span class="pipeline-node-35">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span>[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 2
Finished: FAILURE