Started by user Peter Roels Checking out git https://github.com/larson-group/sam_clubb.git into /home/jenkins/workspace/branch_sam_test@script to read jenkins_tests/sam_micro_drizzle_intel_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_sam_test@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" > git rev-list --no-walk 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_sam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/branch_sam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Setup LES_KK_micro) [Pipeline] sh + SCRIPTS/LES_setup/setup_LES_KK_micro.bash Setting up SAM for a LES using KK microphysics (MICRO_DRIZZLE) Reading the name of the case to be setup from /home/jenkins/workspace/branch_sam_test/CaseName Setting up the configuration for a LES using MICRO_DRIZZLE for DYCOMS_RF02 Copying the special domain file DYCOMS_RF02/domain.f90.les to SRC/domain.F90 ***** REMINDER: change nsubdomains_x and/or nsubdomains_y in SRC/domain.f90 when running in parallel ***** Using the current surface.F90 and nudging.F90 files Copying DYCOMS_RF02/prm to DYCOMS_RF02/prm.prev Copying DYCOMS_RF02/prm.les to DYCOMS_RF02/prm ***** REMINDER: change docloudsed and caseid in DYCOMS_RF02/prm to toggle the cloud water sedimentation setting ***** Copying DYCOMS_RF02/grd to DYCOMS_RF02/grd_prev Copying DYCOMS_RF02/grd_rev to DYCOMS_RF02/grd Copying Build to Build.prev Editing the Build file Case DYCOMS_RF02: Change MICRO_DIR and SGS_DIR in Build, remove CLUBB_DIR, SILHS_DIR, CLUBB_MICROPHYS_UTILS Copying Makefile to Makefile.prev Editing the Makefile ***** REMINDER: remember to comment/uncomment the Makefile for the type of compiler that you are using ***** Copying runsam.bash to runsam.bash.prev Editing runsam.bash ***** REMINDER: remember to comment/uncomment runsam.bash based on the compiler that was used. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Make File) [Pipeline] sh + vim Makefile '+%s/# {nightly intel} DO NOT REMOVE THIS LINE\n#ifeq ($(PLATFORM),Linux)\nifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly intel} DO NOT REMOVE THIS LINE\rifeq ($(PLATFORM),Linux)\r#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal "Makefile" 707L, 22673C "Makefile" 707L, 22673C written + vim Makefile '+%s/# {nightly pgi} DO NOT REMOVE THIS LINE\nifeq ($(PLATFORM),Linux)\n#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly pgi} DO NOT REMOVE THIS LINE\r#ifeq ($(PLATFORM),Linux)\rifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal "Makefile" 707L, 22673C "Makefile" 707L, 22673C written [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstat .*/nstat = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstatfrq.*/nstatfrq = 1,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_2D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_3D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_STAT ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOVIES ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES if ! ( -d /home/jenkins/workspace/branch_sam_test/RESTART ) mkdir /home/jenkins/workspace/branch_sam_test/RESTART mkdir /home/jenkins/workspace/branch_sam_test/RESTART if ! ( -d /home/jenkins/workspace/branch_sam_test/OBJ ) mkdir /home/jenkins/workspace/branch_sam_test/OBJ mkdir /home/jenkins/workspace/branch_sam_test/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/branch_sam_test/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/branch_sam_test/OBJ OBJ cat if ( -e /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/branch_sam_test/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/branch_sam_test/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /opt/intel/oneapi/mpi/2021.3.1/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/opt/intel/oneapi/mpi/2021.3.1/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/MISR_simulator.f /opt/intel/oneapi/mpi/2021.3.1/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/opt/intel/oneapi/mpi/2021.3.1/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/branch_sam_test/SRC/ADV_MPDATA/advection.f90; /opt/intel/oneapi/mpi/2021.3.1/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/opt/intel/oneapi/mpi/2021.3.1/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/branch_sam_test/SRC/domain.F90; /opt/intel/oneapi/mpi/2021.3.1/bin/mpif90 -xHost -c -debug full -CB -g -traceback -check all -ftrapuv -fpe0 -ftz -I/opt/intel/oneapi/mpi/2021.3.1/include -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -DNETCDF -DUWM_STATS -DUWM_MICRO_CHANGES -DPNNL_STATS -DUWM_MISC /home/jenkins/workspace/branch_sam_test/SRC/RAD_CAM/shr_kind_mod.f90; gfortran: error: full: No such file or directory gfortran: error: all: No such file or directory gfortran: error: unrecognized command line option ‘-CB’; did you mean ‘-B’? gfortran: error: unrecognized command line option ‘-traceback’ gfortran: error: unrecognized command line option ‘-check’; did you mean ‘-fcheck=’? gfortran: error: unrecognized command line option ‘-ftrapuv’; did you mean ‘-ftrapv’? gfortran: error: unrecognized command line option ‘-fpe0’; did you mean ‘-fdec’? gfortran: error: unrecognized command line option ‘-ftz’; did you mean ‘-flto’? gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:701: MISR_simulator.o] Error 1 gmake: *** Waiting for unfinished jobs.... gfortran: error: full: No such file or directory gfortran: error: all: No such file or directory gfortran: error: full: No such file or directory gfortran: error: all: No such file or directory gfortran: error: unrecognized command line option ‘-CB’; did you mean ‘-B’? gfortran: error: full: No such file or directory gfortran: error: all: No such file or directory gfortran: error: unrecognized command line option ‘-traceback’ gfortran: error: unrecognized command line option ‘-check’; did you mean ‘-fcheck=’? gfortran: error: unrecognized command line option ‘-ftrapuv’; did you mean ‘-ftrapv’? gfortran: error: unrecognized command line option ‘-CB’; did you mean ‘-B’? gfortran: error: unrecognized command line option ‘-fpe0’; did you mean ‘-fdec’? gfortran: error: unrecognized command line option ‘-ftz’; did you mean ‘-flto’? gfortran: error: unrecognized command line option ‘-CB’; did you mean ‘-B’? gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:697: shr_kind_mod.o] Error 1 gfortran: error: unrecognized command line option ‘-traceback’ gfortran: error: unrecognized command line option ‘-traceback’ gfortran: error: unrecognized command line option ‘-check’; did you mean ‘-fcheck=’? gfortran: error: unrecognized command line option ‘-check’; did you mean ‘-fcheck=’? gfortran: error: unrecognized command line option ‘-ftrapuv’; did you mean ‘-ftrapv’? gfortran: error: unrecognized command line option ‘-ftrapuv’; did you mean ‘-ftrapv’? gfortran: error: unrecognized command line option ‘-fpe0’; did you mean ‘-fdec’? gfortran: error: unrecognized command line option ‘-fpe0’; did you mean ‘-fdec’? gfortran: error: unrecognized command line option ‘-ftz’; did you mean ‘-flto’? gfortran: error: unrecognized command line option ‘-ftz’; did you mean ‘-flto’? gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:697: advection.o] Error 1 gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:699: domain.o] Error 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE