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Started by user Tyler Cernik Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f to read jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision c01d4f0a8a748c267dc5b30b8f9dc567fb7d8a0f (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f c01d4f0a8a748c267dc5b30b8f9dc567fb7d8a0f # timeout=10 Commit message: "Autoupdated SILHS Commit c072656f70eec308312cd411b9098d16a0b69932 Author: cernikt Date: Sat May 13 12:57:45 2023 -0500 Here is another commit that changes nothing Here is the body" > git rev-list --no-walk 3d5e102c0d6b6d21a2ada58b92b70325c61dff72 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision c01d4f0a8a748c267dc5b30b8f9dc567fb7d8a0f (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f c01d4f0a8a748c267dc5b30b8f9dc567fb7d8a0f # timeout=10 Commit message: "Autoupdated SILHS Commit c072656f70eec308312cd411b9098d16a0b69932 Author: cernikt Date: Sat May 13 12:57:45 2023 -0500 Here is another commit that changes nothing Here is the body" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init + git submodule update [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/E3SM_simulations [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 2835402 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-2464977f/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2835402 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + csh nightly_test/nightly_e3sm_ne4_silhs.csh run_e3sm: ++++++++ run_e3sm starting (Sat May 20 10:31:31 AM CDT 2023), version 3.0.22 ++++++++ run_e3sm: $case_name = nelson.mg2_def.ne4_ne4 run_e3sm: -------- Starting create_newcase -------- run_e3sm: /home/jenkins/workspace/branch_e3sm_test//cime/scripts/create_newcase --case nelson.mg2_def.ne4_ne4 --compset FC5AV1C-L --script-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts --res ne4_ne4 --pecount M --handle-preexisting-dirs u --mach nelson --output-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 --project condo Compset longname is 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is Com forcing is present day: ATM component is cam5 physics:EAM with complete set of E3SM atmospheric mods for V1 (72 layers model) and ACES4BGC SOAG emissions- v04p2: LND component is clm4.5 physics:clm4.5 Satellite phenology:clm4.5 Satellite phenology with black carbon deposition: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: c01d4f0a8a Batch_system_type is none Creating Case directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts run_e3sm: -------- Finished create_newcase -------- run_e3sm: Project used for submission: condo run_e3sm: Configuring E3SM to use the COSP simulator. run_e3sm: -------- Starting case.setup -------- run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.setup Successfully cleaned env_mach_specific.xml /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-05-20 10:31:42 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-05-20 10:31:42 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-05-20 10:31:42 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-05-20 10:31:43 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-05-20 10:31:43 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-05-20 10:31:43 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-05-20 10:31:43 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-05-20 10:31:43 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-05-20 10:31:43 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-05-20 10:31:43 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run run_e3sm: -------- Finished case.setup -------- run_e3sm: Creating logical links to make navigating easier. run_e3sm: Note: Beware of using ".." with the links, since the behavior of shell commands can vary. run_e3sm: /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link run_e3sm: run_root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 run_e3sm: run_dir /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link setting case file to env_run.xml run_e3sm: -------- Starting Build -------- run_e3sm: WARNING: Make sure there are no double-slashes (//) in the build command below: => Will cause a build error run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.build Building case in directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-05-20 10:31:44 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-05-20 10:31:44 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-05-20 10:31:45 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-05-20 10:31:45 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-05-20 10:31:45 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-05-20 10:31:45 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-05-20 10:31:45 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-05-20 10:31:45 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-05-20 10:31:45 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-05-20 10:31:45 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gptl.bldlog.230520-103144 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/mct.bldlog.230520-103144 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/pio.bldlog.230520-103144 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/csm_share.bldlog.230520-103144 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/kokkos.bldlog.230520-103144 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.230520-103144 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.230520-103144 Calling make, see top of log file for specific call Total build time: 408.144640 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY run_e3sm: -------- Finished Build -------- Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-05-20 10:38:32 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-05-20 10:38:33 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-05-20 10:38:33 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-05-20 10:38:33 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-05-20 10:38:33 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-05-20 10:38:33 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-05-20 10:38:33 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-05-20 10:38:33 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-05-20 10:38:33 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-05-20 10:38:33 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml run_e3sm: WARNING: This script does not have batch directives for $machine=nelson run_e3sm: Assuming default E3SM values. run_e3sm: condo not recognized as a group, results must be shared manually run_e3sm: $model_start_type = initial (This is NOT necessarily related to RUN_TYPE) run_e3sm: -------- Starting Submission to Run Queue -------- run_e3sm: SUBMITTING JOB: run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.submit Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-05-20 10:38:37 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-05-20 10:38:37 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-05-20 10:38:37 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-05-20 10:38:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-05-20 10:38:38 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-05-20 10:38:38 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-05-20 10:38:38 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-05-20 10:38:38 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-05-20 10:38:38 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-05-20 10:38:38 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-05-20 10:38:38 CASE.RUN BEGINS HERE 2023-05-20 10:38:38 RUN_MODEL BEGINS HERE 2023-05-20 10:38:38 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-05-20 10:38:38 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts 2023-05-20 10:38:38 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-05-20 10:38:38 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-05-20 10:38:38 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-05-20 10:38:39 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-05-20 10:38:39 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-05-20 10:38:39 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-05-20 10:38:39 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-05-20 10:38:39 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-05-20 10:38:39 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-05-20 10:38:39 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-05-20 10:38:39 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-05-20 10:38:39 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-05-20 10:38:39 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-05-20 10:38:39 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-05-20 10:38:39 MODEL EXECUTION BEGINS HERE 2023-05-20 10:38:44 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/e3sm.log.230520-103838 Submitted job case.run with id None run_e3sm: -------- Finished Submission to Run Queue -------- run_e3sm: ++++++++ run_e3sm Completed (Sat May 20 10:38:45 AM CDT 2023) ++++++++ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.230520-103144.gz + cat /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.230520-103144 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts" -DCASETOOLS="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build" -DINCROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include" -DLIBROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-mach nelson -phys default -clubb_sgs -microphys mg2 -chem linoz_mam4_resus_mom_soag -rain_evap_to_coarse_aero -nlev 72 -bc_dep_to_snow_updates -nadv 40 -clubb_sgs -rad rrtmg -chem linoz_mam4_resus_mom_soag -rain_evap_to_coarse_aero -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld real 2.01 user 1.15 sys 0.87 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/CMakeFiles /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 1%] Generating restUtilMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/restUtilMod.F90 [ 1%] Generating buffer.F90 Scanning dependencies of target ocn cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm/buffer.F90 make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/ncdio_pio.F90 [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 1%] Generating physics_buffer.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm/physics_buffer.F90 Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 1%] Generating dynVarMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating subcol_utils.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.096516 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.129416 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.137855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.118053 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.171445 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.397295 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.097835 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.193748 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target libocn.a built in 0.003434 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 2%] Built target ocn /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.196396 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.153410 seconds make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 2%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.152333 seconds cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.259728 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.189599 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py 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cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 3%] Built target rof Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.174340 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.158532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.156082 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.109695 seconds make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.111154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 3%] Linking CXX static library libglc.a cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.004153 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.144326 seconds python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target libglc.a built in 0.002874 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 3%] Built target glc [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.203198 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 3%] Building Fortran object 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.202215 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.165793 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.116711 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 4%] Linking CXX static library libwav.a cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.198978 seconds cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a 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Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 4%] Built target wav [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.210366 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 4%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.351146 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.195071 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.166359 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.113305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 4%] Linking CXX static library libiac.a cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd 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libiac.a built in 0.002837 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.159815 seconds [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o [ 4%] Built target iac /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU make -f cmake/esp/CMakeFiles/esp.dir/build.make 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-DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 5%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.113363 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU [ 5%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.102061 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.160229 seconds [ 5%] Linking CXX static library libesp.a cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.002847 seconds python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.203958 seconds Target libesp.a built in 0.002802 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 5%] Built target esp /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.206676 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.200480 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.157882 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.202318 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.155543 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.157618 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/chem_mods.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/chem_mods.F90.o [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 0.713354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.192768 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.158759 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o [ 7%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/chem_mods.F90.o built in 0.192537 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.154317 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.152266 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.225348 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.157965 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.432495 seconds Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.239403 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.159178 seconds [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.154176 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_spc_id.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_spc_id.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.221375 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.156335 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_spc_id.F90.o built in 0.194433 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.157845 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.158711 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.229602 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.230026 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_factor.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.153971 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_solve.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_solve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.156864 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_factor.F90.o built in 0.205629 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_solve.F90.o built in 0.212510 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.155297 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.157317 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.213549 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.191777 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.155053 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.161097 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.194310 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.200144 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_rxt_rates_conv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_rxt_rates_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.163393 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.162332 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 1.755412 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_rxt_rates_conv.F90.o built in 0.208927 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_rxt_id.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.163789 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.316649 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.204720 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_rxt_id.F90.o built in 0.190067 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.157538 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.155601 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.188445 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.282707 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.156589 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.152780 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.187559 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.188144 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.574997 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.151837 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.154274 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.135197 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.232163 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.156610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.190232 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.157576 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.158158 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.191117 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.158011 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.189283 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.384528 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.157679 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.154335 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.189561 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.119682 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.227386 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.156070 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.155548 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.190256 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.156642 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.435731 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.157351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.189407 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.188724 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.154822 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.229795 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.188789 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.153050 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.155187 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.430785 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.188284 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.193309 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.154348 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.159704 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.191637 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.279933 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.186419 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.153251 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.155222 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.190381 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.190050 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.156216 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.152459 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.187971 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.189288 seconds cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.156876 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.151475 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.189716 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.189512 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.155192 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.158026 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.192162 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.139954 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.154070 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.184822 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.186874 seconds [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.616534 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.161171 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.190495 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.158765 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.197429 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.153784 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.152036 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.185901 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.156827 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.152814 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.224306 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.150856 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.191114 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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[ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.110446 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.264410 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.184976 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.192446 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.350131 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.166473 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o /usr/bin/cmake 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.228556 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.193166 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o 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-DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.133613 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.177813 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.154854 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.163956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.166605 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.463430 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.156849 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.196763 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.161948 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_bounds.mod 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.098655 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o built in 0.195101 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.166997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/porosityfunctionmod.mod cmake/lnd/CMakeFiles/lnd.dir/porosityfunctionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxmod.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.203603 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.161331 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.213329 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.200614 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 0.843282 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.192484 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.193956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -isystem /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.161395 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.163286 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.354469 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.264635 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.160598 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.224549 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.786614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.374478 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.157162 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.157157 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.189939 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.217355 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 0.952637 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.208006 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.211855 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.225734 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.120713 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 3.630914 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.110066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.163245 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_cpl_indices.mod cmake/lnd/CMakeFiles/lnd.dir/elm_cpl_indices.mod.stamp GNU cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj 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seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landunittype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesglobals.mod cmake/lnd/CMakeFiles/lnd.dir/fatesglobals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtparametersmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtparametersmod.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.192938 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 5.141624 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.203205 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.225960 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.221165 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.218134 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 0.693887 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.217835 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.152410 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.195034 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=866 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.304772 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.229177 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_mods.mod cmake/atm/CMakeFiles/atm.dir/chem_mods.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.262219 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 0.752031 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.219297 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 28%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=866 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.320120 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_cpl_indices.mod cmake/atm/CMakeFiles/atm.dir/cam_cpl_indices.mod.stamp GNU [ 28%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_indprd.F90.o [ 28%] Built target ice [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_prod_loss.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lin_matrix.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_nln_matrix.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_nln_matrix.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_adjrxt.F90.o built in 0.212486 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lin_matrix.F90.o built in 0.202873 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_nln_matrix.F90.o built in 0.206691 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.289689 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.219201 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.202009 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.414421 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.198148 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.225953 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.252373 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_phtadj.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_phtadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.182404 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.187315 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.179228 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_phtadj.F90.o built in 0.197960 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG 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touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.210938 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.178417 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/chem_mods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/m_spc_id.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.198353 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.216275 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_factor.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.233925 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_lu_solve.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.213109 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_rxt_rates_conv.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.202826 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrlw_tbl.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrlw_ref.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.188311 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.171324 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.211665 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.189287 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.191565 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.268182 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.231184 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.190786 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.189610 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.190398 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 0.820732 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o 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-DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.192110 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.192641 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.187544 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.180813 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.284201 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.190717 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.202988 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.196931 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.183986 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.187184 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.194188 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.193974 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.188323 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.379904 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod 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-DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.194953 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.219619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.203130 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.224480 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build /usr/bin/cmake -E 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cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.197987 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.195441 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.220767 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.210976 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.582425 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.217439 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.476057 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.411306 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.287531 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.307165 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.229127 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.205931 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.165674 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.234267 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.385515 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.175857 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.251558 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.197511 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 0.933828 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.291882 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.231526 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.183701 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.705368 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.304009 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.197455 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.170220 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.503332 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.165910 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.177737 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.243334 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.189909 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.193011 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.234034 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.221627 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.312147 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.291643 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.385259 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.234155 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 0.710464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.172728 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.160778 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.239921 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.578690 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.217451 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.297737 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.200929 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.159906 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 7.042138 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.182378 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.368727 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.222772 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 1.522509 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build [ 37%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.572765 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.166946 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.482551 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.654253 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.189878 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.211399 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.180607 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.203531 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.200654 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.320555 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.236277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/kinds.mod cmake/atm/CMakeFiles/atm.dir/kinds.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.417401 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.281754 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.294093 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.217913 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 0.651422 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.194294 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.174596 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 0.669905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.193630 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.190549 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/penta_lu_solvers.mod cmake/atm/CMakeFiles/atm.dir/penta_lu_solvers.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.246689 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.228831 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.209003 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 0.764988 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.181872 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.192987 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.176574 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.607364 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.179719 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.180189 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.181710 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.219954 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.198093 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.241166 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.358567 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.184821 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.187327 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 7.508765 seconds /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.210780 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_datamod.mod.stamp GNU [ 43%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_sim_dat.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_sim_dat.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_sim_dat.F90.o built in 0.223551 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.174568 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.393470 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.723760 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.264756 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.525460 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.220184 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.449963 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.215359 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.211185 seconds Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.252830 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.379264 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.209153 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 0.597833 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.214046 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.354323 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.232039 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.381914 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.208240 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.355893 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.234293 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.218010 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.426069 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.250422 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.368610 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 6.457484 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.244260 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.251946 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.308115 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.220853 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.211412 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.722881 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.282494 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.242881 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.571865 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.259138 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.213186 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.383854 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.222942 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.290607 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.504341 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.208407 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.259993 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.517171 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.374074 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.501338 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.369218 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 0.726663 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.598490 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.236981 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.229085 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.202055 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.283178 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.506195 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.363630 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.217520 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.385605 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_sim_dat.F90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 1.723886 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 9.044858 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o Target 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-DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.500144 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 1.735059 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_solver_wrapper.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.228404 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/waterstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakestatetype.mod cmake/lnd/CMakeFiles/lnd.dir/lakestatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmtype.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.366696 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.233621 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.238998 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.220681 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.192147 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.131066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.479462 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.436277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.336475 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.208463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.268110 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.253820 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.213452 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.428161 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.229532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.164043 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_solver_wrapper.mod cmake/atm/CMakeFiles/atm.dir/matrix_solver_wrapper.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.106227 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.176235 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.203753 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.178823 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.193903 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.288559 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.525990 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.198378 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.263747 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.083766 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.183233 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.177703 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.247468 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.254944 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.211293 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.212194 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.180873 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.721907 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.327904 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 0.832163 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.367045 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.251577 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.245436 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.208455 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU Target 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.239204 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.259106 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.200986 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.315635 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 0.782941 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.256442 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.198909 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.284998 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.204977 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.193784 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.193897 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.297694 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.206316 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.209552 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.200475 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.564810 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E touch 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-DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.214317 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.231291 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.245805 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.469172 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.485765 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.269561 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.233282 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.238816 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.253637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.499748 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.385783 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.254139 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.264962 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.184625 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.381159 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.496908 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.245715 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.219346 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.233448 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.274488 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.203075 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.212058 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.470926 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 1.412689 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.589729 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.313790 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.558334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.843354 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.384153 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 11.806414 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 0.802663 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.545369 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.579747 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.272293 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.385014 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.246406 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.209953 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.216288 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 2.994105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.246175 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.349917 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.462054 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.437653 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.249566 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.323425 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.289015 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.434457 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.202289 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.321544 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.067214 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.238974 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.220989 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.207392 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 1.406197 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.237795 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.299390 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.271760 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.275237 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.197956 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.227224 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.649554 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.232085 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 0.810944 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 3.187799 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 3.012377 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.209155 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 1.675941 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.309092 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.301859 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.259071 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod 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-DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.296498 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 10.829426 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.430247 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.408951 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 9.704262 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.265714 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.303954 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.792287 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.706764 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.424729 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.441691 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.213426 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.262336 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.287872 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.316971 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.541294 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.267552 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.271792 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.572626 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.383009 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.419716 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.589952 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.537479 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.458197 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.295822 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.297910 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.280025 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 5.184335 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.414765 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.742877 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.377617 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.276495 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 0.899649 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.570431 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.322912 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 0.938280 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 2.455285 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.204107 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.575332 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.467185 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.260157 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 1.928263 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build [ 68%] Building 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.253755 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.337798 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.553599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.247195 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.271517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.437791 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.491406 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.287507 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.345054 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 0.933987 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.613188 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 0.965638 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 0.629214 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.230633 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.634479 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.547096 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 0.957164 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.261206 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.459370 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.204489 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.565355 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 1.795230 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.320230 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.355252 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.541027 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.231447 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.548453 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.466167 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.283186 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.295609 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.339692 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.221183 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.189247 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.689345 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.205490 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.465926 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.174237 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.637594 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.538016 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.208766 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.222100 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 0.752676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 0.700493 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.486152 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.476562 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.231731 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.353690 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.380197 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.199894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 1.322129 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.118421 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.671073 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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[ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form 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-DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.492821 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.305637 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o [ 72%] Building Fortran 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.303366 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.405727 seconds /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.351364 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.198750 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.208669 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 1.616644 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.562909 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.767776 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.578003 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.260495 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 0.786377 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.657354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 2.406611 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 1.401704 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.185607 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 2.073381 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.108176 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.195899 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.538643 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.616996 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 0.719615 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.307949 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.403636 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 1.717323 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.296666 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.225677 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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-DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.225119 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.686994 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.626733 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.254689 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.587669 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.366250 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.295741 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.364868 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.095252 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.495238 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.267626 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.230735 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.188685 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.434499 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.215878 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.220241 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.210957 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.566987 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.322676 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.733335 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.153414 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.623690 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.635295 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 0.902330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.340190 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 78%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.204987 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 0.906642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 2.130178 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.208921 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.616226 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.195646 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.224080 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.597461 seconds [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.372489 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.336773 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 2.596932 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.314742 seconds [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.220203 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.132325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.531006 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.746083 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.001485 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU /usr/bin/cmake 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.440956 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.478226 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.214622 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 1.655045 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.599277 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 2.734689 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.259112 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.437024 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.263759 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.318058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.269926 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.226157 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.713164 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.226506 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 2.954359 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.378501 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.215773 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.321378 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.322827 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.282044 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.509261 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 0.943059 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.239418 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.370705 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.363295 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.215222 seconds cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.245404 seconds [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMODAL_AER -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.155365 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.245130 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.622320 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_imp_sol.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.291083 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target liblnd.a built in 0.132819 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 88%] Built target lnd /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.335897 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.353067 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.325709 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.291579 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.436208 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target 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-DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.272938 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.281893 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.294354 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.224617 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.264067 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.203164 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.344040 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.488183 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.321178 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.239222 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.337923 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.389965 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.362550 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.946844 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.484754 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.698707 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 0.985515 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.557960 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 7.385600 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.033393 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.597859 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.698571 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.365301 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.444630 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.408943 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.382339 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.383145 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.672720 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.293980 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.394173 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.379014 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.302064 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.527041 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.406199 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.394154 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 0.702070 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.249523 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.433052 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.390363 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.368509 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.265182 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 0.743244 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.626350 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.350399 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.460133 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.430294 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 0.792273 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.839633 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.262511 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.642829 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.553922 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.280787 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.290745 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.363586 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.509105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.390992 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none 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-DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.394847 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 0.910654 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.331325 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.460004 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU cd 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.381849 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.221513 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.542724 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.457208 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.209393 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.102491 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.385769 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.973350 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 2.037215 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.711109 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 0.829925 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 3.093855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 8.457633 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.482350 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.584315 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.346834 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.273171 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.307380 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.547648 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.582372 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.482614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target 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cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.202893 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.448403 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.318302 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.172770 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.678107 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 0.706268 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.214705 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.149599 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.336410 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.142035 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav 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built in 0.224081 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.535433 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.241320 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.421182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.801034 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.207746 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/wav -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/iac -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/esp -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm 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-DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.380065 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.377444 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl && python /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/rof -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/glc 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-DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/mpas-source/src -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/cpl -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/atm -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/lnd -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ice -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/cmake/ocn 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/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe built in 1.341009 seconds make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/cmake-bld/CMakeFiles 0 real 186.95 user 550.19 sys 119.06 [Pipeline] sh + gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz' gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz: No such file or directory [Pipeline] echo Run logs were not all made. [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS