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          "comment" : "Clubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068)\u000a\u000a* Clubb ticket #1025: Implemented way to make esa tuner reproducible, hid error output of optional diagnostic variables behind check, fixed parallelization issue with tuner, esa max_iters parameter is now in stats namelist, fixed issue with TUNER compiler directive, some small fixes.\u000a- New namelist variables prescribed_rand_seed and l_use_prescribed_rand_seed determine if the esa tuner will use a random or a fixed value as random seed. Added descriptions to README.\u000a- Added max_iters to stats namelist to make it more modifiable.\u000a- Renamed stp_adjst_intercept_in and stp_adjst_slope_in to stp_adjst_shift_in and stp_adjst_factor_in, respectively, to better reflect their influence on step size.\u000a- The error output in src/CLUBB_core/pdf_closure_module.F90 for the diagnostic variables wprtp2, wpthlp2, wprtpthlp, and rcp2 is now hidden behind existence checks for these variables. And a clarification was added to \"#ifdef TUNER\" directive.\u000a- NetCDF file access caused the tuner to crash in parallel mode (-fopenmp flag in config file and multiple cases). Adding an $OMP CRITICAL structure around the call to stats_init in clubb_driver.F90 fixed that.\u000a- Fixed compile/README. Config files are specified with the -c option.\u000a- The -t option in run_scripts/run_tuner.bash interfered with the previous usage of the TUNER compiler directive. Renamed the old TUNER directive to NR_SP, a short for \"numerical recipes, single precision\". TUNER now is the option to \"turn on\" code changes required to run the tuner.\u000a",
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          "comment" : "Gpu updates (#1070)\u000a\u000a* Fixing bug. This was only triggered when l_input_fields=.true., which I am only testing because it needs to be true so that I can test ADG2_driver.\u000a\u000a* Removing usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly.\u000a\u000a* Making openacc statements more consistent. Ensuring all statments on double loops have specified gang and vector, and that all parallel loops have an end parallel loop statment at the end of them. Everything BFB on CPUs and GPUs.\u000a\u000a* Pushing acc data region to outermost parts of mixing_length.\u000a\u000a* Removing pdf_implicit_coefs_terms from acc copyin and copyout. It is only used when iiPDF_type == iiPDF_new .or. iiPDF_type == iiPDF_new_hybrid, so we do not need to do any copying with it. The inclusion of it also caused the data statement to copy unallocated arrays, which are just garbage pointers, and that was causing random occasional crashes (either segfaults or gpu out of memory).\u000a\u000a* The update device clauses for return variables seems to only be requried for arrays contained in types. See https://github.com/larson-group/clubb/issues/1049\\#issuecomment-1440624778\u000a\u000a* Moving acc end data to end of pdf_closure. This reuqired removing any conditional return statements that appear before the final return, since we're not allowed to branch out of an acc region early. I also moved a large printout statement outside of a loop. The only reason it was in the loop to begin with was because pdf_params used to be an array of types, but now is a type of arrays, allowing us to print the full arrays directly.\u000a\u000a* Making loop an acc loop. If we weren't outputting w_[up/down]_in_cloud (iw_up_in_cloud <= 0 .or. iw_down_in_cloud <= 0, then these arrays were only being zerod out on the CPU and would've getting overwritten by the uninitialized GPU data at the end of the data statement. This change causes the arrays to get correctly zerod out on the GPU when we need.\u000a\u000a* Update VariableGroupNondimMoments.py\u000a\u000aFixed a typo\u000a\u000a* Merging new changes from master\u000a\u000a* Removing need for -gpu=deepcopy, pushing some acc data statements up call tree, and replacing some acc data statements with acc delare statements so that return statements can be added back in.\u000a\u000a* Adding back an acc loop that was accidentally removed during a merge.\u000a\u000a---------\u000a\u000aCo-authored-by: Brian Griffin <31553422+bmg929@users.noreply.github.com>\u000a",
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          "comment" : "Implements Thomas Toniazzo's bug fix for spike removal\u000a\u000ain the monotonic flux limiter.  See\u000a\u000ahttps://github.com/larson-group/clubb_release/pull/11/files\u000a\u000aThis code change is\u000aexpected to be BIT_CHANGING for cases in which\u000a`l_predict_upwp_vpwp = T`, `l_mono_flux_lim_um = T`\u000aor `l_mono_flux_lim_vm = T`, and the monotonic\u000aflux limiter is triggered.\u000a\u000aThis bug fix prevents non-conservation of momentum\u000awhen the vertical integral of either of the wind components `um` or `vm` is negative.\u000a",
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          "comment" : "Making 'a_const' into a CLUBB tunable parameter. (#1072)\u000a\u000a* Converting the sfc_varnce_module.F90 parameter 'a_const' into a CLUBB tunable parameter.\u000a\u000aResults should be bit-for-bit since it will be set to 1.8 and with l_vary_convect_depth=F\u000athis is the standard value.\u000a\u000aSome discussion in ticket #994.\u000a\u000a* Completing requested changes, see PR #1072.\u000a",
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          "comment" : "Pdf closure driver gpuization (#1071)\u000a\u000a* GPUizing pdf_closure_driver, testing still needed, bug likely.\u000a\u000a* Making data movement better. Also fixed some random things. Still need to return returns.\u000a\u000a* Adding back a couple return statments. Moving a comment where it should be. GPUizing a missed loop.\u000a\u000a* Making arguements list satisfy standards.\u000a\u000a* Making arguements list satisfy standards. Also adding max(1,hydrometdim) to hydromet inputs.\u000a\u000a* Capitalizing K\u000a\u000a* Making the error case in compute_cloud_cover behavior a bit differently. This allows the error to be detected immediately by GPU runs as well.\u000a\u000a* Calling compute_cloud_cover only needs to be done if l_use_cloud_cover = .true.\u000a",
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          "comment" : "Moving compute_cloud_cover outside of if ( l_use_cloud_cover ) then statement, the cloud_cover and rcm_in_layer variables they compute aren't output in clubb_standalone, but are in cam, causing cam bit diff tests to break.\u000a",
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          "comment" : "Adding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.\u000a",
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          "comment" : "Small GPU fixes (#1076)\u000a\u000a* Fixing small things that I caught by adding the default(present) onto acc loops.\u000a\u000a* Moving default(present) to the end because it looks nicer there.\u000a",
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          "comment" : "Code changes to implement modificiations on wp3 clippings\u000aThis commit contains code changes to implement modifications of skewness\u000aclippings on wp3 in src/CLUBB_core/clip_explicit.F90. The default method attempts\u000ato apply smaller (larger) clippings below (above) 100m AGL level, which\u000acan cause a discontinuities around 100m AGL level. This clippings is\u000afound to trigger sawthooth oscillations in wp3 when linear diffusion is\u000aused. Such swathooth oscillations are eleminated if a smoothed Heaviside\u000afunction is introduced to obtain a smooth transition of clippings at\u000aaround 100m AGL level. The changes is necessary to obtain the first\u000aorder convergence in CLUBB-SCM when lienar diffusion is used.\u000a\u000aPreviously committed by Shixuan.\u000a",
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          "comment" : "This commit contains code changes to implement modifications on limiters in three places:\u000a\u000a1. remove the limiters in denominator of equation for\u000a   brunt_vaisala_freq_sqd_smth, which affects the computed\u000a   eddy dissipation time scale in turbulent fluxes (wpxp).\u000a   (in mixing_length.F90)\u000a\u000a2. reduce the threshold values of limiters in the equation\u000a   for richardson number (sqrt_Ri_zm)\u000a   (in mixing_length.F90)\u000a\u000a3. introduce the smoothed max/min function for limiters in\u000a   equation of Cx_fnc_Richardson.\u000a   (in advance_helper_module.F90).\u000a\u000aAfter the modification, we also apply a zt2m(zm2zt) smoothing\u000aon the calculated quantities. These modifications are found to\u000abe benificial for improving solution convergence in CLUBB-SCM\u000a\u000aThe code changes are controlled by a newly introduced flag named\u000a\"l_modify_limiters_for_cnvg_test\", which is set to .false. (meaning that\u000athe modificaitons on limiters is turned off) by default.\u000a\u000aOriginally committed by Shixuan.\u000a",
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          "comment" : "Making CLUBB's splatting scheme implicit and smoother (#1075)\u000a\u000a* Introducing rough implicit splatting scheme into CLUBB.  Not yet implicit for wp3.\u000a\u000a* Implementing implicit splatting for wp3.\u000a\u000a* Further improvements to implicit splatting code, including\u000a\u000a- smoothing of the BV freq used for splatting\u000a- adding a new variable 'bv_freq_sqd_splat' to stats\u000a- add the new variable to pyplotgen standard output\u000a\u000aSee PR #1075 and issue #994.\u000a\u000a* Some cleanup.\u000a\u000a* More cleanup, and adding comments.\u000a\u000a* More comments.\u000a\u000a* Updating implicit splatting scheme.\u000a\u000a* Updates to resolve PR requests.\u000a\u000aUpdates associated with implicit splatting will be BIT_CHANGING.\u000a",
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          "comment" : "Calc sfc varnce GPUization (#1081)\u000a\u000a* Initial loop push for calc_sfc_varnce\u000a\u000a* BIT_CHANGING:3b086a40085284aa49c71d32c001d20153a8ddb4 the last commit is bit changing for only some cases and only when using higher than -02 optimization. uf min seems to be the first calculation that starting to differ bitwise. Using the check_multicol script confirms the differences are small.\u000a\u000a* Adding a tweak to surface values in the extra columns. This helped me check calc_sfc_varance, since we were not changing any arrays that would've affected calculations there.\u000a\u000a* Small optimization, making wstar and ustar2 scalars.\u000a\u000a* GPUizing calc_sfc_varnce\u000a\u000a* Removing conditional around some stats calls. Now we will always save sfc values to stats, because this will change stats files when gr%zm(i,1) > sfc_elevation, this is potentially BIT_CHANGING.\u000a\u000a* Merging with latest clubb changes and making work on GPUs again.\u000a\u000aThis contained 2 commits that are BIT_CHANGING in some situations.\u000a",
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