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the samxx code. It passes standalone tests. 2020-08-25 11:56:08 -0700a7e14b0a08a197417efc37f1b74f3d7e7e24af8bPopulating the samxx code. It passes standalone tests.addcomponents/cam/src/physics/crm/samxx/fortran/crmdims.F90addcomponents/cam/src/physics/crm/samxx/advect_mom.haddcomponents/cam/src/physics/crm/samxx/fortran/advect_mom.F90addcomponents/cam/src/physics/crm/samxx/fortran/advect_all_scalars.F90addcomponents/cam/src/physics/crm/samxx/cloud.cppaddcomponents/cam/src/physics/crm/samxx/damping.haddcomponents/cam/src/physics/crm/samxx/forcing.haddcomponents/cam/src/physics/crm/samxx/uvw.cppaddcomponents/cam/src/physics/crm/samxx/accelerate_crm.haddcomponents/cam/src/physics/crm/samxx/crm_rad_module.F90addcomponents/cam/src/physics/crm/samxx/test/build/nccmp3.pyaddcomponents/cam/src/physics/crm/samxx/fortran/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/crm.cppaddcomponents/cam/src/physics/crm/samxx/precip_proc.cppaddcomponents/cam/src/physics/crm/samxx/fortran/press_grad.F90addcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppaddcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90addcomponents/cam/src/physics/crm/samxx/precip_init.cppaddcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/test/fortran3d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/bound_duvdt.haddcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar2D.F90addcomponents/cam/src/physics/crm/samxx/fortran/atmosphere.F90addcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90addcomponents/cam/src/physics/crm/samxx/advect_all_scalars.haddcomponents/cam/src/physics/crm/samxx/precip_init.haddcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90addcomponents/cam/src/physics/crm/samxx/test/build/thatchroof_envaddcomponents/cam/src/physics/crm/samxx/fortran/crm_state_module.F90addcomponents/cam/src/physics/crm/samxx/zero.cppaddcomponents/cam/src/physics/crm/samxx/advect_scalar3D.haddcomponents/cam/src/physics/crm/samxx/sgs.cppaddcomponents/cam/src/physics/crm/samxx/z0_est.haddcomponents/cam/src/physics/crm/samxx/fortran/zero.F90addcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90addcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90addcomponents/cam/src/physics/crm/samxx/abcoefs.cppaddcomponents/cam/src/physics/crm/samxx/advect_scalar.cppaddcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.haddcomponents/cam/src/physics/crm/samxx/crmsurface.cppaddcomponents/cam/src/physics/crm/samxx/fortran/uvw.F90addcomponents/cam/src/physics/crm/samxx/fortran/fft.F90addcomponents/cam/src/physics/crm/samxx/crmsurface.haddcomponents/cam/src/physics/crm/samxx/advect_scalar2D.haddcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/setperturb.F90addcomponents/cam/src/physics/crm/samxx/pressure.cppaddcomponents/cam/src/physics/crm/samxx/advect2_mom_z.haddcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shaddcomponents/cam/src/physics/crm/samxx/fortran/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/samxx/press_rhs.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/tke_full.F90addcomponents/cam/src/physics/crm/samxx/kurant.cppaddcomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/samxx/periodic.cppaddcomponents/cam/src/physics/crm/samxx/buoyancy.cppaddcomponents/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/press_grad.haddcomponents/cam/src/physics/crm/samxx/advect_scalar.haddcomponents/cam/src/physics/crm/samxx/test/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/press_rhs.haddcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppaddcomponents/cam/src/physics/crm/samxx/fortran/forcing.F90addcomponents/cam/src/physics/crm/samxx/fortran/buoyancy.F90addcomponents/cam/src/physics/crm/samxx/fortran/vars.F90addcomponents/cam/src/physics/crm/samxx/test/dmdf.F90addcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar.F90addcomponents/cam/src/physics/crm/samxx/setparm.cppaddcomponents/cam/src/physics/crm/samxx/post_timeloop.haddcomponents/cam/src/physics/crm/samxx/abcoefs.haddcomponents/cam/src/physics/crm/samxx/post_icycle.haddcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppaddcomponents/cam/src/physics/crm/samxx/shear_prod3D.haddcomponents/cam/src/physics/crm/samxx/pressure.haddcomponents/cam/src/physics/crm/samxx/pre_timeloop.haddcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/cloud.F90addcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90addcomponents/cam/src/physics/crm/samxx/press_grad.cppaddcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.haddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shaddcomponents/cam/src/physics/crm/samxx/kurant.haddcomponents/cam/src/physics/crm/samxx/fortran/diagnose.F90addcomponents/cam/src/physics/crm/samxx/diffuse_scalar.haddcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar3D.F90addcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppaddcomponents/cam/src/physics/crm/samxx/test/build/runtest.shaddcomponents/cam/src/physics/crm/samxx/shear_prod2D.haddcomponents/cam/src/physics/crm/samxx/timeloop.cppaddcomponents/cam/src/physics/crm/samxx/fortran/task_util_NOMPI.F90addcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod3D.F90addcomponents/cam/src/physics/crm/samxx/boundaries.cppaddcomponents/cam/src/physics/crm/samxx/test/fortran2d/CMakeLists.txtaddcomponents/cam/src/physics/crm/samxx/vars.cppaddcomponents/cam/src/physics/crm/samxx/gammafff.haddcomponents/cam/src/physics/crm/samxx/sat.haddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90addcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppaddcomponents/cam/src/physics/crm/samxx/tke_full.cppaddcomponents/cam/src/physics/crm/samxx/zero.haddcomponents/cam/src/physics/crm/samxx/fortran/advect2_mom_z.F90addcomponents/cam/src/physics/crm/samxx/fortran/grid.F90addcomponents/cam/src/physics/crm/samxx/fortran/abcoefs.F90addcomponents/cam/src/physics/crm/samxx/forcing.cppaddcomponents/cam/src/physics/crm/samxx/fortran/crm_input_module.F90addcomponents/cam/src/physics/crm/samxx/crm_state_module.F90addcomponents/cam/src/physics/crm/samxx/cloud.haddcomponents/cam/src/physics/crm/samxx/fortran/domain.F90addcomponents/cam/src/physics/crm/samxx/fortran/params.F90addcomponents/cam/src/physics/crm/samxx/damping.cppaddcomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.shaddcomponents/cam/src/physics/crm/samxx/crmdims.F90addcomponents/cam/src/physics/crm/samxx/fortran/periodic.F90addcomponents/cam/src/physics/crm/samxx/fortran/setparm.F90addcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90addcomponents/cam/src/physics/crm/samxx/adams.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar.F90addcomponents/cam/src/physics/crm/samxx/fortran/random.F90addcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90addcomponents/cam/src/physics/crm/samxx/crm_output_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90addcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppaddcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppaddcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90addcomponents/cam/src/physics/crm/samxx/setperturb.haddcomponents/cam/src/physics/crm/samxx/samxx_const.haddcomponents/cam/src/physics/crm/samxx/setperturb.cppaddcomponents/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90addcomponents/cam/src/physics/crm/samxx/periodic.haddcomponents/cam/src/physics/crm/samxx/diagnose.haddcomponents/cam/src/physics/crm/samxx/task_init.haddcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.haddcomponents/cam/src/physics/crm/samxx/fortran/crmtracers.F90addcomponents/cam/src/physics/crm/samxx/fft.F90addcomponents/cam/src/physics/crm/samxx/test/build/ncreplicate.pyaddcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppaddcomponents/cam/src/physics/crm/samxx/README.mdaddcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar3D.F90addcomponents/cam/src/physics/crm/samxx/fortran/kurant.F90addcomponents/cam/src/physics/crm/samxx/bound_exchange.cppaddcomponents/cam/src/physics/crm/samxx/fortran/sat.F90addcomponents/cam/src/physics/crm/samxx/fortran/ice_fall.F90addcomponents/cam/src/physics/crm/samxx/fortran/bound_duvdt.F90addcomponents/cam/src/physics/crm/samxx/fortran/damping.F90addcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_proc.F90addcomponents/cam/src/physics/crm/samxx/ice_fall.haddcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppaddcomponents/cam/src/physics/crm/samxx/test/build/download_data.shaddcomponents/cam/src/physics/crm/samxx/microphysics.cppaddcomponents/cam/src/physics/crm/samxx/coriolis.cppaddcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/press_rhs.F90addcomponents/cam/src/physics/crm/samxx/fortran/advect2_mom_xy.F90addcomponents/cam/src/physics/crm/samxx/adams.haddcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppaddcomponents/cam/src/physics/crm/samxx/post_timeloop.cppaddcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90addcomponents/cam/src/physics/crm/samxx/task_init.cppaddcomponents/cam/src/physics/crm/samxx/post_icycle.cppaddcomponents/cam/src/physics/crm/samxx/crm_input_module.F90addcomponents/cam/src/physics/crm/samxx/diffuse_mom.haddcomponents/cam/src/physics/crm/samxx/bound_exchange.haddcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advection.F90addcomponents/cam/src/physics/crm/samxx/fortran/adams.F90addcomponents/cam/src/physics/crm/samxx/diagnose.cppaddcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.haddcomponents/cam/src/physics/crm/samxx/params.F90addcomponents/cam/src/physics/crm/samxx/fortran/crm_output_module.F90addcomponents/cam/src/physics/crm/samxx/fortran/accelerate_crm.F90addcomponents/cam/src/physics/crm/samxx/sgs.haddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom.F90addcomponents/cam/src/physics/crm/samxx/advect_mom.cppaddcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppaddcomponents/cam/src/physics/crm/samxx/fortran/pressure.F90addcomponents/cam/src/physics/crm/samxx/boundaries.haddcomponents/cam/src/physics/crm/samxx/ice_fall.cppaddcomponents/cam/src/physics/crm/samxx/setparm.haddcomponents/cam/src/physics/crm/samxx/fortran/boundaries.F90addcomponents/cam/src/physics/crm/samxx/fortran/task_init.F90addcomponents/cam/src/physics/crm/samxx/uvw.haddcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppaddcomponents/cam/src/physics/crm/samxx/tke_full.haddcomponents/cam/src/physics/crm/samxx/fortran/ecppvars.F90addcomponents/cam/src/physics/crm/samxx/fortran/gammafff.caddcomponents/cam/src/physics/crm/samxx/coriolis.haddcomponents/cam/src/physics/crm/samxx/test/utils.haddcomponents/cam/src/physics/crm/samxx/vars.haddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shaddcomponents/cam/src/physics/crm/samxx/fortran/coriolis.F90addcomponents/cam/src/physics/crm/samxx/microphysics.haddcomponents/cam/src/physics/crm/samxx/test/build/README.mdaddcomponents/cam/src/physics/crm/samxx/test/build/nccmp.pyaddcomponents/cam/src/physics/crm/samxx/buoyancy.haddcomponents/cam/src/physics/crm/samxx/test/build/cmakeclean.shaddcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shaddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod2D.F90addcomponents/cam/src/physics/crm/samxx/fortran/crmsurface.F90addcomponents/cam/src/physics/crm/samxx/timeloop.haddcomponents/cam/src/physics/crm/samxx/precip_proc.haddcomponents/cam/src/physics/crm/samxx/fortran/RNG_MT.F90addcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.haddcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90addcomponents/cam/src/physics/crm/samxx/fortran/utils.F90addcomponents/cam/src/physics/crm/samxx/fortran/bound_exchange.F90.gitmodulesexternals/YAKLaeff45f6b98f3181033f5bc83fcf9e1d7595f62b1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdding YAKL submodule 2020-08-25 11:56:08 -0700aeff45f6b98f3181033f5bc83fcf9e1d7595f62bAdding YAKL submoduleaddexternals/YAKLedit.gitmodulesexternals/YAKL27371af168d192346b27cba84048ddb422fcbe4b1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govYAKL fix 2020-08-25 11:56:08 -070027371af168d192346b27cba84048ddb422fcbe4bYAKL fixeditexternals/YAKLcomponents/cam/bld/configurecomponents/cam/src/physics/crm/samxx/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/cime_config/config_component.xml3a8fde5fe4173765bec8c89d3e20129b66224d7e1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govMaking it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older README 2020-08-25 11:56:08 -07003a8fde5fe4173765bec8c89d3e20129b66224d7eMaking it clear that cub is a library and defaulting it to the home directory. Getting rid of stale information from older READMEeditcomponents/cam/bld/configureeditcomponents/cam/src/physics/crm/samxx/test/build/README.mdeditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/cime_config/config_component.xmleditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/src/physics/crm/samxx/README.mdcomponents/cmake/common_setup.cmakecomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/cime_config/config_compsets.xml9552b8042a0236ec31666d6e022afee67f5abd1d1598381768000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking toward adding -crm samxx as an option 2020-08-25 11:56:08 -07009552b8042a0236ec31666d6e022afee67f5abd1dWorking toward adding -crm samxx as an optioneditcomponents/cmake/common_setup.cmakeeditcomponents/cam/cime_config/config_compsets.xmleditcomponents/cmake/build_model.cmakeaddcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/crmdims.F90components/cam/src/physics/crm/crm_ecpp_output_module.F90components/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/crm_state_module.F90components/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90components/cam/src/physics/crm/crm_state_module.F90components/cam/src/physics/crm/samxx/crm_output_module.F90components/cam/src/physics/crm/samxx/crmdims.F90components/cam/src/physics/crm/crm_output_module.F90components/cam/src/physics/crm/samxx/crm_input_module.F90components/cmake/build_model.cmakecomponents/cam/src/physics/crm/crm_input_module.F90components/cam/src/physics/crm/sam/openacc_utils.F90components/cam/src/physics/crm/sam/params.F90components/cam/src/physics/crm/sam/crm_ecpp_output_module.F90components/cam/src/physics/crm/openacc_utils.F90components/cam/src/physics/crm/sam/crm_state_module.F90components/cam/src/physics/crm/sam/crm_output_module.F90components/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/samxx/crm_rad_module.F90components/cam/src/physics/crm/sam/crm_rad_module.F90components/cam/src/physics/crm/sam/crm_input_module.F90components/cam/bld/config_files/definition.xml98b29355f3e82a4eb04d4423aec0fe1e5ffc9f831598381769000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govsamxx and yakl are building. Working through decoupling crm_physics and sam still. 2020-08-25 11:56:09 -070098b29355f3e82a4eb04d4423aec0fe1e5ffc9f83samxx and yakl are building. Working through decoupling crm_physics and sam still.addcomponents/cam/src/physics/crm/crm_ecpp_output_module.F90deletecomponents/cam/src/physics/crm/sam/crm_rad_module.F90editcomponents/cam/src/physics/crm/crmdims.F90addcomponents/cam/src/physics/crm/crm_output_module.F90deletecomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_rad_module.F90addcomponents/cam/src/physics/crm/crm_input_module.F90editcomponents/cam/src/physics/crm/sam/params.F90editcomponents/cmake/build_model.cmakeaddcomponents/cam/src/physics/crm/openacc_utils.F90editcomponents/cam/src/physics/crm/samxx/CMakeLists.txtdeletecomponents/cam/src/physics/crm/sam/crm_input_module.F90deletecomponents/cam/src/physics/crm/sam/crm_output_module.F90editcomponents/cam/src/physics/crm/crm_physics.F90deletecomponents/cam/src/physics/crm/sam/crm_state_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_state_module.F90addcomponents/cam/src/physics/crm/crm_state_module.F90deletecomponents/cam/src/physics/crm/sam/openacc_utils.F90addcomponents/cam/src/physics/crm/crm_rad_module.F90deletecomponents/cam/src/physics/crm/samxx/crm_output_module.F90deletecomponents/cam/src/physics/crm/samxx/crmdims.F90deletecomponents/cam/src/physics/crm/samxx/crm_input_module.F90editcomponents/cam/bld/config_files/definition.xmlcomponents/cam/src/physics/crm/params_kind.F9060f956f10ed18ec1430e74fe625b0057711964201598381769000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govForgot to add params_kind.F90 2020-08-25 11:56:09 -070060f956f10ed18ec1430e74fe625b005771196420Forgot to add params_kind.F90addcomponents/cam/src/physics/crm/params_kind.F90externals/YAKLcomponents/cam/bld/configurecomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/crm_physics.F90a1e9cf895865113295f1d812c52dddfc4fba04761598382676000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govThe model builds with samxx on the CPU now 2020-08-25 12:11:16 -0700a1e9cf895865113295f1d812c52dddfc4fba0476The model builds with samxx on the CPU noweditcomponents/cam/bld/configureeditexternals/YAKLeditcomponents/cmake/build_model.cmakeeditcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/sam/params.F90components/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/crm.cpp56e08e7504757b6b5b16416c741ccac46fcfaa3d1598383078000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChanged sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runs 2020-08-25 12:17:58 -070056e08e7504757b6b5b16416c741ccac46fcfaa3dChanged sam/ interface to pass cam physics data in rather than accessing from sam/. samxx is still giving the wrong answer (evidenced by complaints in e3sm log). I need to find what's different between the tests and the runseditcomponents/cam/src/physics/crm/sam/params.F90editcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/sam/accelerate_crm.F90editcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/crmsurface.hcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90components/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90components/cam/src/physics/crm/samxx/fortran/crmsurface.F90components/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90components/cam/src/physics/crm/samxx/crmsurface.cppcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/samxx_const.h1bd6099045236ed2c11eceab8d8a90e3f25bdc351598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -07001bd6099045236ed2c11eceab8d8a90e3f25bdc35Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90editcomponents/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txteditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/fortran/crmsurface.F90editcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2D.F90editcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90editcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/cam/src/physics/crm/samxx/fortran/openacc_utils.F90editcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditcomponents/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txteditcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90components/cam/src/physics/crm/samxx/fortran/params.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90components/cam/src/physics/crm/samxx/fortran/pressure.F90components/cam/src/physics/crm/samxx/fortran/periodic.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90164d0e8dbdd801f2d549c076687902609631b0921598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -0700164d0e8dbdd801f2d549c076687902609631b092Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90editcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90editcomponents/cam/src/physics/crm/samxx/fortran/params.F90editcomponents/cam/src/physics/crm/samxx/fortran/periodic.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90editcomponents/cam/src/physics/crm/samxx/fortran/pressure.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90editcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90editcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90editcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/fortran/task_init.F90components/cam/src/physics/crm/samxx/fortran/vars.F9050ed9dac3dca1c6b32c74db6862df86e3e1d46c91598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking to get the samxx fortran baseline the same as the sam/ fortran code 2020-08-25 12:17:59 -070050ed9dac3dca1c6b32c74db6862df86e3e1d46c9Working to get the samxx fortran baseline the same as the sam/ fortran codeeditcomponents/cam/src/physics/crm/samxx/fortran/vars.F90editcomponents/cam/src/physics/crm/samxx/fortran/task_init.F90externals/YAKLcomponents/cam/src/physics/crm/samxx/setperturb.cppcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcd045d772cea3c0ae5dafd7aa7b72c1dca1b81471598383079000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govUsing original FFTs. standalone has machine precision similarity 2020-08-25 12:17:59 -0700cd045d772cea3c0ae5dafd7aa7b72c1dca1b8147Using original FFTs. standalone has machine precision similarityeditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90editcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/crm_physics.F90components/cam/cime_config/config_component.xmlcomponents/cam/cime_config/config_compsets.xml4d2adb941c5cb0e52d9723aba7228f088f6fc63c1598383372000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix F-MMFXX compset modified: components/cam/cime_config/config_component.xml modified: components/cam/cime_config/config_compsets.xml modified: components/cam/src/physics/crm/crm_physics.F90 2020-08-25 12:22:52 -07004d2adb941c5cb0e52d9723aba7228f088f6fc63cFix F-MMFXX compseteditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/cime_config/config_component.xmleditcomponents/cam/cime_config/config_compsets.xmlcomponents/cmake/build_model.cmake.gitmodulescime_config/machines/config_batch.xmlexternals/cubcime_config/machines/config_machines.xmlcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/pressure.cppcime_config/machines/config_compilers.xml326743b6ad7d665631e3d8fe4127e2f278e63a5e1598383665000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govWorking on a hardwired approach to GPU for now. As always, CMake is a dumpster fire. 2020-08-25 12:27:45 -0700326743b6ad7d665631e3d8fe4127e2f278e63a5eWorking on a hardwired approach to GPU for now. As always, CMake is a dumpster fire.editcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakeeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_batch.xmledit.gitmoduleseditcime_config/machines/config_machines.xmladdexternals/cubcomponents/cmake/build_model.cmake72dcd398493ac3939b16dc851f637c4a60fb35221598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govrestricting new stuff to when gnugpu is used 2020-08-25 12:27:46 -070072dcd398493ac3939b16dc851f637c4a60fb3522restricting new stuff to when gnugpu is usededitcomponents/cmake/build_model.cmakecomponents/cmake/common_setup.cmakeexternals/YAKLcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/CMakeLists.txt96fc19e1925eda69d1317607514cb1d40988c6dc1598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govCUDA build works currently. Simulation seems to run successfully. Answer looks good. 2020-08-25 12:27:46 -070096fc19e1925eda69d1317607514cb1d40988c6dcCUDA build works currently. Simulation seems to run successfully. Answer looks good.editcomponents/cmake/common_setup.cmakeeditexternals/YAKLeditcomponents/CMakeLists.txteditcomponents/cmake/build_model.cmakeeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/common_setup.cmake8265b1f3a1cbe4b6a94880204eaa55bc7bb6afa11598383666000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdd comments, wrap CUDA_FLAGS sm_70 in a test for the summit machine 2020-08-25 12:27:46 -07008265b1f3a1cbe4b6a94880204eaa55bc7bb6afa1Add comments, wrap CUDA_FLAGS sm_70 in a test for the summit machineeditcomponents/cmake/build_model.cmakeeditcomponents/cmake/common_setup.cmakeeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/CMakeLists.txt15c6ecc5e058f6b9c6d89eac164e8f801ff0a3d11598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFound a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xml 2020-08-25 12:30:18 -070015c6ecc5e058f6b9c6d89eac164e8f801ff0a3d1Found a nicer way to specify CUDA and CUDA_FLAGS through config_compilers.xmleditcime_config/machines/config_compilers.xmleditcomponents/CMakeLists.txteditcomponents/cmake/build_model.cmakecomponents/CMakeLists.txt54d5682deb9f03f245ff8555480ab5fb6f46b9d81598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govA change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txt 2020-08-25 12:30:18 -070054d5682deb9f03f245ff8555480ab5fb6f46b9d8A change to how USE_CUDA is set to PARENT_SCOPE in CMakeLists.txteditcomponents/CMakeLists.txtcomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90components/cam/src/physics/crm/crm_ecpp_output_module.F90components/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F909fa6e6c50fd066d510316378b83b9771c93d3c341598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRemoving a few duplicate summit gnugpu entries in config_compilers.xml. Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why. 2020-08-25 12:30:18 -07009fa6e6c50fd066d510316378b83b9771c93d3c34Removing a few duplicate summit gnugpu entries in config_compilers.xml. Also, moving the crm_ecpp_output_module.F90 file into sam and samxx separately. This breaks compilation, but I can't figure out why.deletecomponents/cam/src/physics/crm/crm_ecpp_output_module.F90addcomponents/cam/src/physics/crm/samxx/crm_ecpp_output_module.F90editcomponents/cmake/build_model.cmakeaddcomponents/cam/src/physics/crm/sam/crm_ecpp_output_module.F90editcime_config/machines/config_compilers.xmlcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmake052b23d0bcf9eea737b18fcc2a7d8a45374f98d41598383818000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead. 2020-08-25 12:30:18 -0700052b23d0bcf9eea737b18fcc2a7d8a45374f98d4Fixing the compilation bug. samxx is no longer trying to compile crm_ecpp_output_module.F90 and is leavng it to the libatm.a build instead.editcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/fortran/atmosphere.F90components/cam/src/physics/crm/samxx/press_grad.cppcomponents/cam/src/physics/crm/samxx/diagnose.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppcomponents/cam/src/physics/crm/samxx/fortran/random.F90components/cam/src/physics/crm/samxx/fft.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/precip_proc.cppcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppcomponents/cam/src/physics/crm/samxx/periodic.cppcomponents/cam/src/physics/crm/samxx/sgs.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/cam/src/physics/crm/samxx/tke_full.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppcomponents/cam/src/physics/crm/samxx/cloud.cppcomponents/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/precip_init.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/advect2_mom_xy.cppcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/advect_scalar.cppcomponents/cam/src/physics/crm/samxx/fortran/fft.F90components/cam/src/physics/crm/samxx/press_rhs.cpp50ae95aca1a3b8ebce10a89d138d3cfb2d80d0601598383828000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govretabbing source files 2020-08-25 12:30:28 -070050ae95aca1a3b8ebce10a89d138d3cfb2d80d060retabbing source 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clang-format on the C++ code in samxx 2020-08-25 12:32:00 -070078d5d75f6381307e722f22155987309efd3125f3Using clang-format on the C++ code in 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cppcomponents/cam/src/physics/crm/samxx/periodic.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.hcomponents/cam/src/physics/crm/samxx/forcing.hcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom.hcomponents/cam/src/physics/crm/samxx/uvw.cppcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/tke_full.hcomponents/cam/src/physics/crm/samxx/advect_scalar3D.hcomponents/cam/src/physics/crm/samxx/timeloop.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/ice_fall.hcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/setparm.hcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppc5883818ebbcff64e111b849521fca0c16c04c901598383920000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRevert "Using clang-format on the C++ code in samxx" This reverts commit f0c52b92c7a33b9dd922be6edab8d9940ae9cfd3. 2020-08-25 12:32:00 -0700c5883818ebbcff64e111b849521fca0c16c04c90Revert "Using clang-format on the C++ code in samxx"editcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.heditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.heditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.heditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/setparm.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppeditcomponents/cam/src/physics/crm/samxx/adams.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/z0_est.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/post_icycle.heditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/task_init.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.heditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.heditcomponents/cam/src/physics/crm/samxx/setperturb.heditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/uvw.heditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/forcing.heditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.heditexternals/scorpioeditcomponents/cam/src/physics/crm/samxx/damping.heditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/abcoefs.heditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/sgs.heditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/kurant.heditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.heditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.c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clang-format without all the submodules problems from before 2020-08-25 12:35:03 -0700977657ad839da9ed921ecf4dc52024a077efe4f9using clang-format without all the submodules problems from beforeeditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/setparm.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.heditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.heditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/sgs.heditcomponents/cam/src/physics/crm/samxx/adams.heditcomponents/cam/src/physics/crm/samxx/coriolis.heditcomponents/cam/src/physics/crm/samxx/ice_fall.heditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/tke_full.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.heditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.heditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/advect_mom.heditcomponents/cam/src/physics/crm/samxx/bound_duvdt.heditcomponents/cam/src/physics/crm/samxx/uvw.heditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/crm/samxx/abcoefs.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.heditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.heditcomponents/cam/src/physics/crm/samxx/task_init.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/z0_est.heditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/forcing.heditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/kurant.heditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/press_rhs.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/damping.hcomponents/cam/src/physics/crm/samxx/accelerate_crm.hcomponents/cam/src/physics/crm/samxx/cloud.hcomponents/cam/src/physics/crm/samxx/damping.hcomponents/cam/src/physics/crm/samxx/buoyancy.cppcomponents/cam/src/physics/crm/samxx/bound_duvdt.hcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppcomponents/cam/src/physics/crm/samxx/diagnose.cppcomponents/cam/src/physics/crm/samxx/precip_init.hcomponents/cam/src/physics/crm/samxx/task_init.hcomponents/cam/src/physics/crm/samxx/zero.hcomponents/cam/src/physics/crm/samxx/setparm.cppcomponents/cam/src/physics/crm/samxx/crmsurface.cppcomponents/cam/src/physics/crm/samxx/boundaries.hcomponents/cam/src/physics/crm/samxx/press_rhs.hcomponents/cam/src/physics/crm/samxx/advect_mom.cppcomponents/cam/src/physics/crm/samxx/sgs.cppcomponents/cam/src/physics/crm/samxx/tke_full.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar.hcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppcomponents/cam/src/physics/crm/samxx/bound_exchange.hcomponents/cam/src/physics/crm/samxx/adams.hcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.hcomponents/cam/src/physics/crm/samxx/post_timeloop.hcomponents/cam/src/physics/crm/samxx/diagnose.hcomponents/cam/src/physics/crm/samxx/damping.cppcomponents/cam/src/physics/crm/samxx/kurant.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_z.hcomponents/cam/src/physics/crm/samxx/post_icycle.hcomponents/cam/src/physics/crm/samxx/microphysics.hcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/gammafff.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.hcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.hcomponents/cam/src/physics/crm/samxx/coriolis.hcomponents/cam/src/physics/crm/samxx/press_grad.hcomponents/cam/src/physics/crm/samxx/sgs.hcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppcomponents/cam/src/physics/crm/samxx/abcoefs.cppcomponents/cam/src/physics/crm/samxx/task_init.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppcomponents/cam/src/physics/crm/samxx/pressure.cppcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/pressure.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/advect_mom.hcomponents/cam/src/physics/crm/samxx/z0_est.hcomponents/cam/src/physics/crm/samxx/crm.cppcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.hcomponents/cam/src/physics/crm/samxx/advect_scalar.hcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppcomponents/cam/src/physics/crm/samxx/periodic.hcomponents/cam/src/physics/crm/samxx/shear_prod2D.hcomponents/cam/src/physics/crm/samxx/advect_scalar.cppcomponents/cam/src/physics/crm/samxx/press_rhs.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.hcomponents/cam/src/physics/crm/samxx/ice_fall.cppcomponents/cam/src/physics/crm/samxx/press_grad.cppcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.hcomponents/cam/src/physics/crm/samxx/precip_proc.hcomponents/cam/src/physics/crm/samxx/cloud.cppcomponents/cam/src/physics/crm/samxx/setperturb.cppcomponents/cam/src/physics/crm/samxx/precip_init.cppcomponents/cam/src/physics/crm/samxx/buoyancy.hcomponents/cam/src/physics/crm/samxx/diffuse_mom.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.hcomponents/cam/src/physics/crm/samxx/forcing.cppcomponents/cam/src/physics/crm/samxx/advect_all_scalars.hcomponents/cam/src/physics/crm/samxx/sat.hcomponents/cam/src/physics/crm/samxx/adams.cppcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppcomponents/cam/src/physics/crm/samxx/abcoefs.hcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppcomponents/cam/src/physics/crm/samxx/samxx_const.hcomponents/cam/src/physics/crm/samxx/boundaries.cppcomponents/cam/src/physics/crm/samxx/crmsurface.hcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppcomponents/cam/src/physics/crm/samxx/zero.cppcomponents/cam/src/physics/crm/samxx/uvw.hcomponents/cam/src/physics/crm/samxx/bound_exchange.cppcomponents/cam/src/physics/crm/samxx/setperturb.hcomponents/cam/src/physics/crm/samxx/kurant.hcomponents/cam/src/physics/crm/samxx/precip_proc.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.hcomponents/cam/src/physics/crm/samxx/periodic.cppcomponents/cam/src/physics/crm/samxx/forcing.hcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/cam/src/physics/crm/samxx/diffuse_mom.hcomponents/cam/src/physics/crm/samxx/uvw.cppcomponents/cam/src/physics/crm/samxx/tke_full.hcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/timeloop.hcomponents/cam/src/physics/crm/samxx/advect_scalar3D.hcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/cam/src/physics/crm/samxx/ice_fall.hcomponents/cam/src/physics/crm/samxx/microphysics.cppcomponents/cam/src/physics/crm/samxx/coriolis.cppcomponents/cam/src/physics/crm/samxx/setparm.hcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppd60827525c8c1e5a5fd8aea8ec918fcf3f2aeac31598384103000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govRevert "using clang-format without all the submodules problems from before" This reverts commit 9bb6330a596edba0bfce5517eda1568e0a54aec5. 2020-08-25 12:35:03 -0700d60827525c8c1e5a5fd8aea8ec918fcf3f2aeac3Revert "using clang-format without all the submodules problems from before"editcomponents/cam/src/physics/crm/samxx/advect2_mom_z.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/sat.heditcomponents/cam/src/physics/crm/samxx/accelerate_crm.heditcomponents/cam/src/physics/crm/samxx/periodic.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.cppeditcomponents/cam/src/physics/crm/samxx/damping.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/setparm.cppeditcomponents/cam/src/physics/crm/samxx/adams.heditcomponents/cam/src/physics/crm/samxx/abcoefs.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.heditcomponents/cam/src/physics/crm/samxx/precip_proc.heditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom.heditcomponents/cam/src/physics/crm/samxx/gammafff.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.heditcomponents/cam/src/physics/crm/samxx/zero.heditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/damping.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.heditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.heditcomponents/cam/src/physics/crm/samxx/advect_all_scalars.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.heditcomponents/cam/src/physics/crm/samxx/shear_prod3D.heditcomponents/cam/src/physics/crm/samxx/advect_scalar.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.heditcomponents/cam/src/physics/crm/samxx/forcing.heditcomponents/cam/src/physics/crm/samxx/kurant.heditcomponents/cam/src/physics/crm/samxx/press_rhs.heditcomponents/cam/src/physics/crm/samxx/precip_init.heditcomponents/cam/src/physics/crm/samxx/buoyancy.heditcomponents/cam/src/physics/crm/samxx/timeloop.heditcomponents/cam/src/physics/crm/samxx/task_init.heditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/sgs.heditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/diagnose.heditcomponents/cam/src/physics/crm/samxx/abcoefs.heditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.heditcomponents/cam/src/physics/crm/samxx/press_grad.heditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/advect_mom.heditcomponents/cam/src/physics/crm/samxx/shear_prod2D.heditcomponents/cam/src/physics/crm/samxx/z0_est.heditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.heditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/cloud.heditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.heditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/advect_mom.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.heditcomponents/cam/src/physics/crm/samxx/crmsurface.heditcomponents/cam/src/physics/crm/samxx/pressure.heditcomponents/cam/src/physics/crm/samxx/setparm.heditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.heditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.heditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/task_init.cppeditcomponents/cam/src/physics/crm/samxx/boundaries.heditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.heditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/s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line length for samxx files 2020-08-25 12:35:03 -07003fa7de9d0dadeaecb18b9684e5a30b6bd604d197Reducing line length for samxx fileseditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.hcomponents/cam/src/physics/crm/crm_physics.F90b7a211b97616c3f064ccfb44bcc78c38439a81c41598384103000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govbetter comment for MSA in crm_physics.F90 2020-08-25 12:35:03 -0700b7a211b97616c3f064ccfb44bcc78c38439a81c4better comment for MSA in crm_physics.F90editcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/crm.cpp4aca58bf066ffe75b42708345e0200b19181275a1598389550000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govApply MMF aerosol optics changes to samxx modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-08-25 14:05:50 -07004aca58bf066ffe75b42708345e0200b19181275aApply MMF aerosol optics changes to samxxeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/crm_physics.F90a9435b466dfddb9b7003fef62a80627853cfcb1d1598395772000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAdjust ifdefs to fix odd build error 2020-08-25 15:49:32 -0700a9435b466dfddb9b7003fef62a80627853cfcb1dAdjust ifdefs to fix odd build erroreditcomponents/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/vars.h26e25b5facc5fa0e59625111501e0b9d2b8dcc211598399420000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix build errors modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-08-25 19:50:20 -040026e25b5facc5fa0e59625111501e0b9d2b8dcc21Fix build errorseditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/post_timeloop.cppb90ac68d1146634606286fbbbca413c15700d36b1598460505000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd averaging step for crm_clear_rh modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp 2020-08-26 12:48:25 -0400b90ac68d1146634606286fbbbca413c15700d36bAdd averaging step for crm_clear_rheditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/mpas-source37538d9090804a08b75161553fe47022b5b53bcf1598470149000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixes sea ice melt bug 2020-08-26 14:29:09 -050037538d9090804a08b75161553fe47022b5b53bcfUpdate mpas-source: fixes sea ice melt bugeditcomponents/mpas-sourcecomponents/cam/src/physics/crm/samxx/post_timeloop.cppd8c4ecafbf981ac62917d95e48b88925f17837521598479260000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd semi-colon 2020-08-26 18:01:00 -0400d8c4ecafbf981ac62917d95e48b88925f1783752Add semi-coloneditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakeexternals/YAKL348bd502756bc18c47f90aa16558e06dceca04b71598479381000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing a build issue with non-CUDA builds 2020-08-26 18:03:01 -0400348bd502756bc18c47f90aa16558e06dceca04b7Fixing a build issue with non-CUDA buildseditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakeeditexternals/YAKLcomponents/homme/src/share/sl_advection.F90aa238a4e94015efb11cc75ef2d662c52d0aeed371598479673000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Fix number of levels in SL trajectory DSS. The DSS for the trajectory phase was exchanging one more level than necessary. Fix this. 2020-08-26 15:07:53 -0700aa238a4e94015efb11cc75ef2d662c52d0aeed37Homme: Fix number of levels in SL trajectory DSS.editcomponents/homme/src/share/sl_advection.F90components/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/vars.cpp6c7d06dccd8ea189fbbd6020749bd65cfb46b35c1598482911000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comtypo fix 2020-08-26 19:01:51 -04006c7d06dccd8ea189fbbd6020749bd65cfb46b35ctypo fixeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/homme/src/share/gllfvremap_mod.F90622efb4baa6bca1efa3c957d6855c79aeab605421598485598000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Grid total area diagnostic data in simulations. Previously, grid total area diagnostic data were available only in unit tests. Make it runnable from a standard E3SM simulation. 2020-08-26 16:46:38 -0700622efb4baa6bca1efa3c957d6855c79aeab60542Homme: Grid total area diagnostic data in simulations.editcomponents/homme/src/share/gllfvremap_mod.F90components/homme/src/share/bndry_mod_base.F9029017cba1f6eacd025d40ea76b3c5f8441923bbb1598497629000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Fix a performance bug in boundary exchange. singlethread_copy was initialized to .false. at declaration, but that means once it's set to .true., it retains that value at next subroutine call. This was preventing the threaded copying to run. Fix this bug. 2020-08-26 20:07:09 -070029017cba1f6eacd025d40ea76b3c5f8441923bbbHomme: Fix a performance bug in boundary 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clm testmods to elm Rename elm/cime_config/testdefs/testmods_dirs/clm to elm/cime_config/testdefs/testmods_dirs/elm Also rename user_nl_clm to user_nl_elm 2020-08-26 23:07:46 -050009615590e8e160d023efeaa4ba2b3590d9d15390Rename clm testmods to 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ommandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/pts/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/crop_trans_f10/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/irrig_o3_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/USUMB/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_mosartaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/rootlit/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/af_bias_v5/user_nl_datmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/clmmos_usrdat/user_nl_mosartaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/crop/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_datmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subsetLate/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/lulcc_sville/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/glcMEC/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/betr/shell_commandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/drydepnomegan/shell_commandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/ptsRLA/shell_commandsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/shell_commandsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_increase/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/tropicAtl_subsetEarly/READMEdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/bgcexp/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subsetEarly/READMEdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/NoVSNoNI/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/shell_commandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/glcMEC_decrease/READMEdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/ptsRLA/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/drydepnomegan/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/tropicAtl_subset/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/USUMB/shell_commandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/snowlayers_12/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/af_bias_v5/shell_commandsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/glcMEC_long/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/glcMEC_changeFlags/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/vrtlay/include_user_modsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/irrigOn_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/snowlayers_3_monthly/include_user_modsdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/crop_trans_f10/READMEdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/cn_conly/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/clm/allActive/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/READMEaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_clmcimecomponents/elm/bld/build-namelistcime_config/tests.py.gitmodulescomponents/elm/cime_config/buildnmlcomponents/elm/cime_config/config_compsets.xmlcomponents/elm/cime_config/config_component.xmlcomponents/mosart/cime_config/buildnmlcime_config/config_grids.xmle8c9c00547cdcefaf36a38f94343abb919892fb21598506194000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename clm to elm in CIME Do all renaming in CIME pieces necessary to change clm to elm Update config_files, commit to a branch in cime and update submodule to point to that branch. Rename CLM45 to ELM in all I compsets This and below lets e3sm_land_developer tests pass the setup phase with the new name. Rename all compsets in elm/cime_config/config_compsets.xml and references to them in config_components.xml, config_grids.xml and mosarts buildnml Edit elm buildnml and build-namelist to use "elm" in some variable names including elmconf_dir, elm.input_data_list Rename testmods in the test suite from e.g. clm-bgcexp to elm-bgcexp Also remove all the CLM40 compsets. 2020-08-27 00:29:54 -0500e8c9c00547cdcefaf36a38f94343abb919892fb2Rename clm to elm in CIMEeditcomponents/mosart/cime_config/buildnmleditcime_config/tests.pyeditcimeeditcomponents/elm/cime_config/buildnmleditcomponents/elm/bld/build-namelisteditcomponents/elm/cime_config/config_compsets.xmledit.gitmoduleseditcime_config/config_grids.xmleditcomponents/elm/cime_config/config_component.xmlcomponents/cam/src/physics/crm/rrtmgp/radiation.F90components/cam/src/physics/rrtmgp/radiation.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/cam/bld/build-namelistcomponents/cam/src/physics/rrtmgp/radiation_utils.F90a43f9b962aef85a8ba45e0106a2f52189a812eb01598550217000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAddress PR comments modified: components/cam/bld/build-namelist modified: components/cam/bld/namelist_files/namelist_defaults_cam.xml modified: components/cam/bld/namelist_files/namelist_definition.xml modified: components/cam/src/physics/crm/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation_utils.F90 2020-08-27 10:43:37 -0700a43f9b962aef85a8ba45e0106a2f52189a812eb0Address PR commentseditcomponents/cam/src/physics/rrtmgp/radiation.F90editcomponents/cam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/cam/src/physics/rrtmgp/radiation_utils.F90editcomponents/cam/src/physics/crm/rrtmgp/radiation.F90editcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/bld/build-namelistcomponents/mpas-ocean/cime_config/buildnml3850da7c06457333247945c19a2b7226f02866ea1598555761000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd activeTracerHorMixTendency to the timeSeriesStatsMonthlyOutput stream 2020-08-27 14:16:01 -05003850da7c06457333247945c19a2b7226f02866eaAdd activeTracerHorMixTendency to the timeSeriesStatsMonthlyOutput streameditcomponents/mpas-ocean/cime_config/buildnmlcomponents/cam/src/physics/crm/rrtmgp/radiation.F90components/cam/src/physics/rrtmgp/radiation_utils.F90components/cam/src/physics/rrtmgp/radiation.F903f8e205e20a43de15ac9fcc21846047e97ce0f311598557423000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govAddress more PR comments modified: components/cam/src/physics/crm/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation.F90 modified: components/cam/src/physics/rrtmgp/radiation_utils.F90 2020-08-27 12:43:43 -07003f8e205e20a43de15ac9fcc21846047e97ce0f31Address more PR commentseditcomponents/cam/src/physics/crm/rrtmgp/radiation.F90editcomponents/cam/src/physics/rrtmgp/radiation_utils.F90editcomponents/cam/src/physics/rrtmgp/radiation.F90components/mpas-source2cd591fa4f4bfcdc9111df4e0e8dd224de561a4f1598561925000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: compass only 2020-08-27 13:58:45 -07002cd591fa4f4bfcdc9111df4e0e8dd224de561a4fupdate mpas-source: compass onlyeditcomponents/mpas-sourcecomponents/homme/cmake/HommeMacros.cmake8f70a242a75a15f5abd3b3892e7fb80e67e16bda1598584959000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix cmake warning when homme is built without pio support. 2020-08-27 21:22:39 -06008f70a242a75a15f5abd3b3892e7fb80e67e16bdaHomme: fix cmake warning when homme is built without pio support.editcomponents/homme/cmake/HommeMacros.cmakecomponents/clm/src/main/clmfates_interfaceMod.F90components/clm/src/biogeochem/EcosystemBalanceCheckMod.F90components/clm/src/data_types/ColumnDataType.F90components/clm/src/main/initVerticalMod.F90components/clm/src/biogeochem/PhosphorusDynamicsMod.F902c97b92878886bed71092e5c5c19c1cb1c30fe171598635843000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates-nutrients: added site level mass balance tracking to phosphatase driven p uptake by plants. Cleaned up interface routines and where they call some routines from 2020-08-28 13:30:43 -04002c97b92878886bed71092e5c5c19c1cb1c30fe17fates-nutrients: added site level mass balance tracking to phosphatase driven p uptake by plants. Cleaned up interface routines and where they call some routines fromeditcomponents/clm/src/main/initVerticalMod.F90editcomponents/clm/src/data_types/ColumnDataType.F90editcomponents/clm/src/main/clmfates_interfaceMod.F90editcomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/clm/src/biogeochem/EcosystemBalanceCheckMod.F90cimef9837d9badfae7438500aeceecfba424b25933091598642807000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule again [BFB] 2020-08-28 15:26:47 -0400f9837d9badfae7438500aeceecfba424b2593309Update CIME submodule againeditcimecomponents/mpas-source10db1cf4315620f43b3f651bb8d026fafb8895ae1598739890000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: compiler flag changes 2020-08-29 15:24:50 -070010db1cf4315620f43b3f651bb8d026fafb8895aeUpdate mpas-source: compiler flag changeseditcomponents/mpas-sourcecomponents/cmake/build_mpas_model.cmake61106909622c50b6258476a74935969acb777f391598774979000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd CIME src path for MPAS builds That is needed by Depends.intel.cmake 2020-08-30 03:09:39 -050061106909622c50b6258476a74935969acb777f39Add CIME src path for MPAS buildseditcomponents/cmake/build_mpas_model.cmakecomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/src/wrm/WRM_type_mod.F90components/mosart/bld/namelist_files/namelist_definition_mosart.xmlcomponents/mosart/src/wrm/WRM_modules.F90components/mosart/bld/build-namelist4c065b857592b0136fdda93b46f7bc8bda5f17d21598886739000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govadd dam construction year for transient runs 2020-08-31 08:12:19 -07004c065b857592b0136fdda93b46f7bc8bda5f17d2add dam construction year for transient runseditcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmleditcomponents/mosart/src/wrm/WRM_type_mod.F90editcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmleditcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/mosart/bld/build-namelistcomponents/mosart/src/wrm/WRM_modules.F90c919ba36c9c7509ddbf06936d5060bfeaf87ac441598887405000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govsmall change 2020-08-31 08:23:25 -0700c919ba36c9c7509ddbf06936d5060bfeaf87ac44small changeeditcomponents/mosart/src/wrm/WRM_modules.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlfb55e980b3501a02ffd0776e1b19f99f630c5ab31598931802000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comFixes default compute interval for heat budget 2020-08-31 22:43:22 -0500fb55e980b3501a02ffd0776e1b19f99f630c5ab3Fixes default compute interval for heat budgeteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-source89523c4e4fcf14a209e9e3ef09af4fa9bda968751598979478000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: fix landIceMask bug 2020-09-01 09:57:58 -070089523c4e4fcf14a209e9e3ef09af4fa9bda96875Update mpas-source: fix landIceMask bugeditcomponents/mpas-sourcecomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlf757726b81acb488870f4ae03cc2f95eaa27867d1598983363000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govFix format error 2020-09-01 13:02:43 -0500f757726b81acb488870f4ae03cc2f95eaa27867dFix format erroreditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/CMakeLists.txt31c90bb1c5e3cdec51e01da17a982618843e57081598983841000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: set default value for USE_MPIEXEC Note that if someone uses a mach file that already sets the variable, this mod has no side effect (the mach file value is used). However, if someone is developing without a mach file, this sets a reasonable default value for a generic machine. 2020-09-01 12:10:41 -060031c90bb1c5e3cdec51e01da17a982618843e5708Homme: set default value for USE_MPIEXECeditcomponents/homme/CMakeLists.txtcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txt33daa98f8f81334817e2ad9174339891d8e4b9001598984101000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: correctly link to scorpio/scorpio_classic when building with pio support 2020-09-01 12:15:01 -060033daa98f8f81334817e2ad9174339891d8e4b900Homme: correctly link to scorpio/scorpio_classic when building with pio supporteditcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txteditcomponents/homme/test/unit_tests/CMakeLists.txteditcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txt634cb30a71a3494d035b57180a95a5e3e93faf171598990698000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: remove un-needed (and problematic) deps in share_kokkos_ut 2020-09-01 14:04:58 -0600634cb30a71a3494d035b57180a95a5e3e93faf17Homme: remove un-needed (and problematic) deps in share_kokkos_uteditcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/share_kokkos_ut/col_ops_ut.cppd123abad3202590994315806eaa5c11990872cb41598993491000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in col_ops_ut [packed reduction] 2020-09-01 14:51:31 -0600d123abad3202590994315806eaa5c11990872cb4Homme: bug fix in col_ops_ut [packed reduction]editcomponents/homme/test_execs/share_kokkos_ut/col_ops_ut.cppcime_config/allactive/config_compsets.xml27c45a0352e99d84fc74cfc72a1c18fcb921e3aa1599023706000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in allactive compsets Replace CLM45 and CLM with ELM in allactive compsets. Remove all cases with CLM40 2020-09-02 00:15:06 -050027c45a0352e99d84fc74cfc72a1c18fcb921e3aaReplace CLM with ELM in allactive compsetseditcime_config/allactive/config_compsets.xmlcime_config/allactive/config_pesall.xmla600b1d4bb4cb0a076e5d53eaf860dd5cfb4a6261599023812000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange CLM to ELM in config_pesall Change CLM to ELM in config_pesall.xml 2020-09-02 00:16:52 -0500a600b1d4bb4cb0a076e5d53eaf860dd5cfb4a626Change CLM to ELM in config_pesalleditcime_config/allactive/config_pesall.xmlcomponents/cam/cime_config/config_compsets.xmlcomponents/cam/cime_config/config_component.xmld855c854099f57c387c547527e2c60b96d08c8bb1599024168000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in F-cases Replace CLM with ELM in all F-cases 2020-09-02 00:22:48 -0500d855c854099f57c387c547527e2c60b96d08c8bbReplace CLM with ELM in F-caseseditcomponents/cam/cime_config/config_compsets.xmleditcomponents/cam/cime_config/config_component.xmlcomponents/cam/src/physics/crm/samxx/post_icycle.cppcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppcomponents/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/crm_physics.F90777a9461c5759c9f172d10b7f27cbfeb7fe2b6311599061561000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix clear air RH variables in samxx modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/post_icycle.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-02 11:46:01 -0400777a9461c5759c9f172d10b7f27cbfeb7fe2b631Fix clear air RH variables in samxxeditcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/mpas-source4986a27deae16dc5339da3aa99d826f43fd14dde1599064710000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: bugfix 3rd order advection coeff 2020-09-02 09:38:30 -07004986a27deae16dc5339da3aa99d826f43fd14ddeUpdate mpas-source: bugfix 3rd order advection coeffeditcomponents/mpas-sourceexternals/YAKLcomponents/cam/src/physics/crm/samxx/CMakeLists.txtcomponents/cmake/build_model.cmakecime_config/machines/config_compilers.xmlcomponents/cam/src/physics/crm/samxx/microphysics.cpp34df0078801f7c6aaf2d667b5e83b733ed8739941599079721000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govFixing machine files to automatically add -DYAKL_DEBUG to CXXFLAGS for debug runs, fix for debugging symbols and for duplicate CUDA flags 2020-09-02 16:48:41 -040034df0078801f7c6aaf2d667b5e83b733ed873994Fixing machine files to automatically add -DYAKL_DEBUG to CXXFLAGS for debug runs, fix for debugging symbols and for duplicate CUDA flagseditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditcomponents/cmake/build_model.cmakeeditcime_config/machines/config_compilers.xmleditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditexternals/YAKLcomponents/homme/test_execs/CMakeLists.txte283e51cc0e30d1943fb4bcd5a956cb93b03f1151599081484000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: build homme_tool tests only if tool is enabled. 2020-09-02 15:18:04 -0600e283e51cc0e30d1943fb4bcd5a956cb93b03f115Homme: build homme_tool tests only if tool is enabled.editcomponents/homme/test_execs/CMakeLists.txtcime_config/tests.py2b8b7623e14d13ae3d21f7c11ea4ca9ea7cb49d71599085154000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govUpdate MMF tests 2020-09-02 15:19:14 -07002b8b7623e14d13ae3d21f7c11ea4ca9ea7cb49d7Update MMF testseditcime_config/tests.pycomponents/homme/src/share/cxx/HybridVCoord.cpp0fd3df37e06a628ccbf31e5b84f2529189b9d7ea1599087249000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix random initialization of HybridVCoord 2020-09-02 16:54:09 -06000fd3df37e06a628ccbf31e5b84f2529189b9d7eaHomme: fix random initialization of HybridVCoordeditcomponents/homme/src/share/cxx/HybridVCoord.cppcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/homme/test_execs/thetal_kokkos_ut/forcing_ut.cppac4c8d446361835f8c401580aa088c2831c12c691599087918000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fix to TeamUtils, to accommodate league_size=0 RemapFunctor sets up a bunch of TeamUtils (TU), and one happens to have league_size=0 in certain configurations. The TU will never be used in such cases, so avoid raising an error in that case. Also, added check for phi forcing at surface in forcing_ut. 2020-09-02 17:05:18 -0600ac4c8d446361835f8c401580aa088c2831c12c69Homme: fix to TeamUtils, to accommodate league_size=0editcomponents/homme/src/share/cxx/kokkos_utils.hppeditcomponents/homme/test_execs/thetal_kokkos_ut/forcing_ut.cppcomponents/mpas-source85fff26c4bae2378df3459c64cb993e6783525a11599146820000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate mpas-source submodule with updated MALI code This is the final version of the MPAS source update to be consistent with existing state of e3sm/develop. 2020-09-03 08:27:00 -070085fff26c4bae2378df3459c64cb993e6783525a1Update mpas-source submodule with updated MALI codeeditcomponents/mpas-sourcecomponents/mpas-albany-landice/cime_config/buildnmlcime_config/config_grids.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcime_config/allactive/config_compsets.xml9cd546ddda314b44e816fd2f2b0e79f6c2caf6ce1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govInitial commits to support the mpas.gis1to10km mesh in a tri-grid configuration This includes references for the new mapping files. Additional required changes were added in the CIME submodule to files: cime/src/drivers/mct/cime_config/config_component.xml | 2 +- cime/src/externals/mct/mpeu/m_inpak90.F90 | 2 +- 2020-09-03 08:27:06 -07009cd546ddda314b44e816fd2f2b0e79f6c2caf6ceInitial commits to support the mpas.gis1to10km mesh in a tri-grid configurationeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/mpas-albany-landice/cime_config/buildnmleditcime_config/allactive/config_compsets.xmleditcime_config/config_grids.xmlcomponents/clm/cime_config/config_compsets.xmlf7e4ebd1117d9194de4438a9403edc1c524171031599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govChange IG compset definition to use FO-MALI instead of SIA-MALI 2020-09-03 08:27:06 -0700f7e4ebd1117d9194de4438a9403edc1c52417103Change IG compset definition to use FO-MALI instead of SIA-MALIeditcomponents/clm/cime_config/config_compsets.xmlcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/user_nl_malibf9f3e52b64165f8cc332517343acb5d374017d01599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govReplace albany_input.xml file with yaml version The yaml solver settings may be changed in the future. 2020-09-03 08:27:06 -0700bf9f3e52b64165f8cc332517343acb5d374017d0Replace albany_input.xml file with yaml versionaddcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamleditcomponents/mpas-albany-landice/cime_config/buildnmleditcomponents/mpas-albany-landice/cime_config/user_nl_malideletecomponents/mpas-albany-landice/bld/namelist_files/albany_input.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml680afa664a28a04219979994b4b771a205748c3a1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate albany_input.yaml to use tpetra/MueLu 2020-09-03 08:27:06 -0700680afa664a28a04219979994b4b771a205748c3aUpdate albany_input.yaml to use tpetra/MueLueditcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcime_config/machines/config_compilers.xml124bb5229dfca5287af0ec7f3c13b3736e59caef1599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate version of Albany used by MALI on Cori Note: Other machines can/will be added later. The corresponding update to mpas-source submodule is not included in this commit, and the code will therefore not build. 2020-09-03 08:27:06 -0700124bb5229dfca5287af0ec7f3c13b3736e59caefUpdate version of Albany used by MALI on Corieditcime_config/machines/config_compilers.xmlcomponents/mpas-albany-landice/bld/build-namelistb2c9ae18970af5f8d8c0fb0a40181d9498d5f4a71599146826000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate logic for MALI_DYNAMIC to reflect True/False values 2020-09-03 08:27:06 -0700b2c9ae18970af5f8d8c0fb0a40181d9498d5f4a7Update logic for MALI_DYNAMIC to reflect True/False valueseditcomponents/mpas-albany-landice/bld/build-namelistcomponents/mpas-albany-landice/bld/build-nameliste42136c608437492a914344d22be38b9639d4e141599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake MALI_DYNAMIC options uppercase 2020-09-03 08:27:07 -0700e42136c608437492a914344d22be38b9639d4e14Make MALI_DYNAMIC options uppercaseeditcomponents/mpas-albany-landice/bld/build-namelistcime_config/allactive/config_compsets.xml2b11147aea9173157a8651d192ce60f22fafb7d41599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake A_BGWCYCL1850 compset use FO MALI 2020-09-03 08:27:07 -07002b11147aea9173157a8651d192ce60f22fafb7d4Make A_BGWCYCL1850 compset use FO MALIeditcime_config/allactive/config_compsets.xmlcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/mpas-albany-landice/bld/build-namelist-sectioncomponents/mpas-albany-landice/bld/namelist_files/namelist_definition_mali.xmlcomponents/mpas-albany-landice/bld/build-namelistf5248ea4db546d75896608a1b3f0238a2c4230b31599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate namelist scripts to correspond to changes to Registry 2020-09-03 08:27:07 -0700f5248ea4db546d75896608a1b3f0238a2c4230b3Update namelist scripts to correspond to changes to Registryeditcomponents/mpas-albany-landice/bld/build-namelisteditcomponents/mpas-albany-landice/bld/namelist_files/namelist_definition_mali.xmleditcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmleditcomponents/mpas-albany-landice/bld/build-namelist-sectioncomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml9d6093006a401ee6267924f0d72441ec0d56c66d1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govUpdate fsurdat for r05 grid at sim_year 2000 Conflicts: cime 2020-09-03 08:27:07 -07009d6093006a401ee6267924f0d72441ec0d56c66dUpdate fsurdat for r05 grid at sim_year 2000editcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml064c1409807faaa7ae41b86805b4c548f3ee548e1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govupdate albany_input.yaml file 2020-09-03 08:27:07 -0700064c1409807faaa7ae41b86805b4c548f3ee548eupdate albany_input.yaml fileeditcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/buildnmlc8db58072259961758bc3c8a46483345e926ad711599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govChange MALI input file for mpas.gis1to10km resolution 2020-09-03 08:27:07 -0700c8db58072259961758bc3c8a46483345e926ad71Change MALI input file for mpas.gis1to10km resolutioneditcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yaml07044362c4382a27a07d3eac061f31dc072035881599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govComment out option to write out Albany exo files by default. 2020-09-03 08:27:07 -070007044362c4382a27a07d3eac061f31dc07203588Comment out option to write out Albany exo files by default.editcomponents/mpas-albany-landice/bld/namelist_files/albany_input.yamlcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-albany-landice/bld/build-namelistcf07eb52d5b73d7469dcd02565ddb6f7164d74de1599146827000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govScript changes to allow input file and decomp files have different dates 2020-09-03 08:27:07 -0700cf07eb52d5b73d7469dcd02565ddb6f7164d74deScript changes to allow input file and decomp files have different dateseditcomponents/mpas-albany-landice/cime_config/buildnmleditcomponents/mpas-albany-landice/bld/build-namelistcomponents/clm/cime_config/config_compsets.xmlcime_config/allactive/config_compsets.xml6a7a2caa22aa4aded0f30453e3200c1f55d8d41e1599146828000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govMake BG and IG compsets used Static MALI (but with Albany build) This is to have these compsets by default have ice sheet evolution disabled (because it is still problematic), but allow it to be enabled with user_nl changes so that runs with active ice sheets can be performed easily. In the future when ice evolution is happening reliably, this commit can be reversed. 2020-09-03 08:27:08 -07006a7a2caa22aa4aded0f30453e3200c1f55d8d41eMake BG and IG compsets used Static MALI (but with Albany build)editcime_config/allactive/config_compsets.xmleditcomponents/clm/cime_config/config_compsets.xmlcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmlcomponents/mpas-albany-landice/bld/build-namelist72e65ab04a6923f5ad6270ca425a4915e1d709fc1599146828000http://carson.math.uwm.edu/jenkins/user/mhoffmanmhoffmanmhoffman@lanl.govDisable calving in MALI by default This commit sets the calving method to 'none'. The previous default of having calving operating made no sense because restore_calving was also on. This commit also makes sure that calving will always be set to 'none' when MALI is in STATIC mode. For now this is redundant with the first change, but if we change the default calving behavior in the future, we will still want no calving to occur in STATIC mode. 2020-09-03 08:27:08 -070072e65ab04a6923f5ad6270ca425a4915e1d709fcDisable calving in MALI by defaulteditcomponents/mpas-albany-landice/bld/namelist_files/namelist_defaults_mali.xmleditcomponents/mpas-albany-landice/bld/build-namelistcomponents/clm/cime_config/config_compsets.xml64176c34dc2c9f9dc8a15b6759cc8620a023179b1599160958000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govModify IGCLM45_MLI compset to use SIA 2020-09-03 14:22:38 -050064176c34dc2c9f9dc8a15b6759cc8620a023179bModify IGCLM45_MLI compset to use SIAeditcomponents/clm/cime_config/config_compsets.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml63d1ca94a8628883f95603897af2c6c2b1f770221599172514000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govCheckout from master to reod the rebase 2020-09-03 17:35:14 -050063d1ca94a8628883f95603897af2c6c2b1f77022Checkout from master to reod the rebaseeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml6739ad2b7ec9c01b50fd855378ce01ca600e44921599174048000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate fsurdat for r05 grid at sim_year 2000 Conflicts: cime Conflicts: components/clm/bld/namelist_files/namelist_defaults_clm4_5.xml 2020-09-03 18:00:48 -05006739ad2b7ec9c01b50fd855378ce01ca600e4492Update fsurdat for r05 grid at sim_year 2000editcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xml21818e71bd3da6900fb2fd9fb957a0197bb5847e1599174318000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd last datafile changes to support new MALI implementation 2020-09-03 18:05:18 -050021818e71bd3da6900fb2fd9fb957a0197bb5847eAdd last datafile changes to support new MALI implementationeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/cam/src/physics/cam/micro_mg2_0.F905e84714cc6e65dd0b9c2c9a851555f8c2929c39d1599195749000http://carson.math.uwm.edu/jenkins/user/kai.zhangkai.zhangkai.zhang@pnnl.govfixed a bug in the previous commit related to incloud -> grid-mean conversion modified: micro_mg2_0.F90 2020-09-03 22:02:29 -07005e84714cc6e65dd0b9c2c9a851555f8c2929c39dfixed a bug in the previous commit related to incloud -> grid-mean conversioneditcomponents/cam/src/physics/cam/micro_mg2_0.F90components/homme/cmake/machineFiles/summit-p9-omp.cmakecomponents/homme/src/share/cxx/Tracers.cppcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakecomponents/homme/src/share/prim_driver_base.F90components/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/config.h.cmake.incomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/homme/src/share/cxx/prim_driver.cppcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmake7d36ff4b568044b80d1dc5aba4194c9563e883961599199678000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Removed HOMMEXX_GB_CONFIG CPP logic We now compile all the code. 2020-09-04 00:07:58 -06007d36ff4b568044b80d1dc5aba4194c9563e88396Homme: Removed HOMMEXX_GB_CONFIG CPP logiceditcomponents/homme/cmake/machineFiles/summit-p9-omp.cmakeeditcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakeeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppeditcomponents/homme/src/share/cxx/Tracers.cppeditcomponents/homme/src/theta-l_kokkos/config.h.cmake.ineditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmakeeditcomponents/homme/src/share/cxx/prim_driver.cppcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/cam/src/physics/clubb/model_flags.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F909d583d268a970019b247d9d750c525c47273cae81599246705000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govupdated clubbv2 2020-09-04 12:11:45 -07009d583d268a970019b247d9d750c525c47273cae8updated clubbv2editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/homme/src/theta-l_kokkos/cxx/prim_advance_exp.cppa8ca249a653a5176b5683a7091b23a013ba896811599258684000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: update dirk weights in tstep 10 in theta-l_kokkos target 2020-09-04 16:31:24 -0600a8ca249a653a5176b5683a7091b23a013ba89681HOMME: update dirk weights in tstep 10 in theta-l_kokkos targeteditcomponents/homme/src/theta-l_kokkos/cxx/prim_advance_exp.cppcime99e186088efb8c64bdc30fd8f87722bed6a0ec2e1599260914000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAnother update 2020-09-04 19:08:34 -040099e186088efb8c64bdc30fd8f87722bed6a0ec2eAnother updateeditcimecomponents/cmake/build_model.cmakeexternals/kokkoscomponents/cmake/common_setup.cmakeb7b269b3cfaca869e861fa01e6d65e201dc588a31599280914000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govUpgraded kokkos version to 3.2, and adjusted e3sm cmake logic Kokkos no longer creates 'kokkos_generated_settings.cmake'. However, the easy thing to do is to simply find the kokkos package, which is cmake's best way to deal with TPLs. This caused a minor issue related to how cmake looks for the package config file. See inline comment in components/cmake/common_setup.cmake for more info. 2020-09-05 00:41:54 -0400b7b269b3cfaca869e861fa01e6d65e201dc588a3Upgraded kokkos version to 3.2, and adjusted e3sm cmake logiceditcomponents/cmake/build_model.cmakeeditexternals/kokkoseditcomponents/cmake/common_setup.cmakecomponents/cam/src/physics/cam/micro_mg2_0.F9064dc9f14bc17095dadc896c840d7ee577ff2e0121599459145000http://carson.math.uwm.edu/jenkins/user/kai.zhangkai.zhangkai.zhang@pnnl.govThis fix is to address Wuyin's comments on the overall consistency between in-cloud & grid mean cdnc and state & tendency update. 2020-09-06 23:12:25 -070064dc9f14bc17095dadc896c840d7ee577ff2e012This fix is to address Wuyin's comments on the overall consistency between in-cloud &editcomponents/cam/src/physics/cam/micro_mg2_0.F90components/mosart/src/wrm/WRM_modules.F90components/mosart/src/wrm/WRM_subw_IO_mod.F90574f0ef4db4442869b0d47b66d49dee1fd64372f1599584971000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govfixing negative reservoir storage bug 2020-09-08 10:09:31 -0700574f0ef4db4442869b0d47b66d49dee1fd64372ffixing negative reservoir storage bugeditcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90components/cmake/common_setup.cmake6f6d5d98e4835c4e118c8f1f130b9b26c7f8cadd1599585866000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govExclude default paths when looking for kokkos This is the safest thing to do, to prevent cmake to silently pick up another installation of cmake, found in some other cmake search path. 2020-09-08 11:24:26 -06006f6d5d98e4835c4e118c8f1f130b9b26c7f8caddExclude default paths when looking for kokkoseditcomponents/cmake/common_setup.cmakeexternals/YAKLcomponents/cmake/build_model.cmakecomponents/cam/src/physics/crm/samxx/CMakeLists.txtcime_config/machines/config_compilers.xmlb57d58eea970be11627d9eeea78072203008564a1599594461000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govHandling the C++14 requirement for yakl and samxx 2020-09-08 15:47:41 -0400b57d58eea970be11627d9eeea78072203008564aHandling the C++14 requirement for yakl and samxxeditcime_config/machines/config_compilers.xmleditcomponents/cmake/build_model.cmakeeditcomponents/cam/src/physics/crm/samxx/CMakeLists.txteditexternals/YAKLcomponents/mpas-sourcee199ac479680d6ffb372feedea608b63116bc5ec1599600255000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate MPAS-Source: Rayleigh damping fix and continuation line 2020-09-08 14:24:15 -0700e199ac479680d6ffb372feedea608b63116bc5ecUpdate MPAS-Source: Rayleigh damping fix and continuation lineeditcomponents/mpas-sourcecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/full_updateannuallanduse.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile8c678d9c6ac5c9d391057d369096c58c91d5f8ac1599608359000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated LUT for alignment between iESM and ELM LUT now uses previous year as reference for post-2000, and also tracks pasture. New reference files have been created, and the land conversion assumptions have been updated to better reflect CMIP6 scenarios, particularly ssp5rcp85 as this is the available LUH2 data. This is a standalone version of the same file used in iESM for E3SMv2. 2020-09-08 16:39:19 -07008c678d9c6ac5c9d391057d369096c58c91d5f8acUpdated LUT for alignment between iESM and ELMdeletecomponents/clm/tools/clm4_5/land_use_translator/full_updateannuallanduse.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefileaddcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefileb7e75da428c4aa23a37906b8a1f888fbef9467b61599608380000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated comments for LUT v2 2020-09-08 16:39:40 -0700b7e75da428c4aa23a37906b8a1f888fbef9467b6Updated comments for LUT v2editcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile38dc8ce2dc9f8e315c23eb3500a63f7c2197617f1599608636000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govIncreased precision of calculations and outputs Internal variables and calculations are now double instead of float. Rounding to integer no longer occurs for area outputs. There is still rounding in double to float conversion for writing files. Small grass distribution bug fixed. Updated Makefile to hopefully work on different machines. Added some debug info. Changes to be committed: modified: components/clm/tools/clm4_5/land_use_translator/Makefile modified: components/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c 2020-09-08 16:43:56 -070038dc8ce2dc9f8e315c23eb3500a63f7c2197617fIncreased precision of calculations and outputseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile3da971bcbc08cc4f354a1d08eba2fb5a7e2cc5471599608646000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated Makefile to help with compilation on Cori and Compy Added checks for Cori and Compy to set different complier and netcdf options. Also added some comments to the beginning of udateannuallanduse_v2.c 2020-09-08 16:44:06 -07003da971bcbc08cc4f354a1d08eba2fb5a7e2cc547Updated Makefile to help with compilation on Cori and Compyeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefileaa3f3badc400ca73f30875ea56b44e3299f6cd1f1599608651000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated makefile and cleaned up some precision issues This makefile should now work will on both NERSC Cori and on PNNL Compy. Added a tolerance to some error checks to account for increased precision. Cleaned up some zero and 100 checks to account for increased precision. 2020-09-08 16:44:11 -0700aa3f3badc400ca73f30875ea56b44e3299f6cd1fUpdated makefile and cleaned up some precision issueseditcomponents/clm/tools/clm4_5/land_use_translator/Makefileeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c614e80effacf28fa31272b4a0bb28e1e382e51371599608655000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdded high-precision rounding to stabilize outputs across machines Final sum checks have been modified to avoid pft swaps due to different selections for adjustment. The pft pct values are now multiplied by 1E5, rounded, checked, then converted back to percent. This happens at the end of both the sethurttcrop and sethurttpasture functions. 2020-09-08 16:44:15 -0700614e80effacf28fa31272b4a0bb28e1e382e5137Added high-precision rounding to stabilize outputs across machineseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.cb060f0119537a11436f75bac7e4d89e691cb19fe1599608660000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAlso rounding the harvest outputs Rounding the harvest outputs to same precision as pft outputs. Added a debugging check to harvest normalization. 2020-09-08 16:44:20 -0700b060f0119537a11436f75bac7e4d89e691cb19feAlso rounding the harvest outputseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c1fc59d895669b292e778b41830394d71e91e230d1599608663000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govTurned off debug output for default Final LUT file without debug output. 2020-09-08 16:44:23 -07001fc59d895669b292e778b41830394d71e91e230dTurned off debug output for defaulteditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/Makefile7f53e9a6453c4497c14112c575bacfa9614314541599608668000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdded additional make message in Makefile Makefile now returns a suggestion if the make fails. 2020-09-08 16:44:28 -07007f53e9a6453c4497c14112c575bacfa961431454Added additional make message in Makefileeditcomponents/clm/tools/clm4_5/land_use_translator/Makefilecomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c520457fbe67a72997e36428bc1b1c08b7f00913f1599608671000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated 1850 and 2015 initial file mcrop names in code New mcrop lut initial files for 1850 and 2015 have been created with the current LUT. The names are hardcoded in the code, so they had to be updated. 2020-09-08 16:44:31 -0700520457fbe67a72997e36428bc1b1c08b7f00913fUpdated 1850 and 2015 initial file mcrop names in codeeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c3f34e2b819160ec4dd3a061d0c6450adacc66dc61599608675000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdate run example to include current input file directory 2020-09-08 16:44:35 -07003f34e2b819160ec4dd3a061d0c6450adacc66dc6Update run example to include current input file directoryeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c6236981ed3398671d65aac980d4526a1d060e1561599608678000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated land use translator to more easily do different scenarios Changed the first input argument to be LUH input state file name denoting the scenario. Only historical file names can and must have "HIST" in the name to determine the years to process. Output file names are now based on the input file name. 2020-09-08 16:44:38 -07006236981ed3398671d65aac980d4526a1d060e156Updated land use translator to more easily do different scenarioseditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmlcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.commoncomponents/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90251afedc5594a60b10d72bbe2cdff72bc63abb281599608682000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated mksurfdata tools for new LUT Updated the mksurfdat Makefile.common to fix the LDFLAGS line. Changed a tolerance value in mksurfdat.F90 for near-zero machine error to account for pft pct being rounded to 1e-7 rather than integer percent. Updated the default namelist values for mksrf_fvegtyp to get the correct files and to include all potential CMIP6 RCPs. Added an explicit type conversion in updateannuallanduse_v2.c. Changes to be committed: modified: components/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xml modified: components/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c modified: components/clm/tools/clm4_5/mksurfdata_map/src/Makefile.common modified: components/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90 2020-09-08 16:44:42 -0700251afedc5594a60b10d72bbe2cdff72bc63abb28Updated mksurfdata tools for new LUTeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmleditcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.commoneditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ceditcomponents/clm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90components/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmle7b2bddc3b8089c25cbcc6374f62da91e3eb90141599608685000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated namelist defaults for mksrf_vegtyp Added all years for SSP2 RCP85 and SSP5 RCP85 so that single-year surface files can be created for any year. modified: components/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xml 2020-09-08 16:44:45 -0700e7b2bddc3b8089c25cbcc6374f62da91e3eb9014Updated namelist defaults for mksrf_vegtypeditcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5_tools.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmla430e6219d1edc63b47949918ca0645cbaa9fcfd1599608688000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdate clm namelist definition to include new land surface file rcp tags Included the new rcp options for creating land surface files in the valid rcp tags check in components/clm/bld/namelist_files/namelist_definition_clm4_5.xml 2020-09-08 16:44:48 -0700a430e6219d1edc63b47949918ca0645cbaa9fcfdUpdate clm namelist definition to include new land surface file rcp tagseditcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.c2e837e7f23b56bb4e7f8bfb896a31d9a514688d71599608694000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdated the default historical file name The LUT input file names have been changed, so this default name in the code for the"1850" option has been updated. 2020-09-08 16:44:54 -07002e837e7f23b56bb4e7f8bfb896a31d9a514688d7Updated the default historical file nameeditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/mosart/src/wrm/WRM_modules.F90components/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/src/wrm/WRM_type_mod.F90308771629241a39a017969c2ab8ebda5530138b11599610468000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govrename WRMUnit%active to WRMUnit%active_stage 2020-09-08 17:14:28 -0700308771629241a39a017969c2ab8ebda5530138b1rename WRMUnit%active to WRMUnit%active_stageeditcomponents/mosart/src/wrm/WRM_type_mod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90.gitmodulesexternals/kokkos52bc1495a5b57536255f145e66a647d82dfddd961599629415000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govChanged kokkos version used for submodule In order to get around issue 3355 on kokkos github repo, we had to use our E3SM fork with an additional commit, that takes care of not adding a problematic link flag. 2020-09-08 23:30:15 -060052bc1495a5b57536255f145e66a647d82dfddd96Changed kokkos version used for submoduleedit.gitmoduleseditexternals/kokkoscomponents/homme/cmake/Kokkos.cmakecomponents/homme/test_execs/theta-l-nlev30-kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txtcomponents/homme/test_execs/theta-nlev72-kokkos/CMakeLists.txtcomponents/homme/test_execs/theta-nlev128-kokkos/CMakeLists.txtcomponents/homme/test_execs/theta-l-nlev72-kokkos/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/src/share/compose/CMakeLists.txt97b7d583235131b49966d190438380582a24bfa71599629508000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: Removed pointless macro link_to_kokkos Since kokkos is built internally, we should use the cmake native way of adding tpl dependencies, namely target_link_libraries, which takes care of compile/link flags/options. 2020-09-08 23:31:48 -060097b7d583235131b49966d190438380582a24bfa7HOMME: Removed pointless macro link_to_kokkoseditcomponents/homme/test_execs/theta-nlev72-kokkos/CMakeLists.txteditcomponents/homme/test/unit_tests/CMakeLists.txteditcomponents/homme/test_execs/theta-l-nlev72-kokkos/CMakeLists.txteditcomponents/homme/test_execs/theta-nlev128-kokkos/CMakeLists.txteditcomponents/homme/src/share/compose/CMakeLists.txteditcomponents/homme/test_execs/thetal_kokkos_ut/CMakeLists.txteditcomponents/homme/cmake/Kokkos.cmakeeditcomponents/homme/test_execs/preqx_kokkos_ut/CMakeLists.txteditcomponents/homme/test_execs/theta-l-nlev30-kokkos/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/homme/test_execs/thetal_kokkos_ut/caar_ut.cpp1c1aac2cfd7c6c6bf135827127a181a56a37db9b1599631042000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHOMME: fix Kokkos error in debug mode on Cuda 2020-09-08 23:57:22 -06001c1aac2cfd7c6c6bf135827127a181a56a37db9bHOMME: fix Kokkos error in debug mode on Cudaeditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppeditcomponents/homme/test_execs/thetal_kokkos_ut/caar_ut.cppcomponents/cam/src/physics/clubb/stats_zt_module.F90components/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/Skx_module.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90components/cam/src/physics/clubb/diffusion.F90components/cam/src/physics/clubb/turbulent_adv_pdf.F90components/cam/src/physics/clubb/lapack_wrap.F90components/cam/src/physics/clubb/stat_file_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/corr_varnce_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/parameter_indices.F90components/cam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/clubb/error_code.F90components/cam/src/physics/clubb/mono_flux_limiter.F90components/cam/src/physics/silhs/transform_to_pdf_module.F90components/cam/src/physics/clubb/mixing_length.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/src/physics/clubb/variables_prognostic_module.F90components/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_type_utilities.F90components/cam/src/physics/silhs/est_kessler_microphys_module.F90components/cam/src/physics/clubb/setup_clubb_pdf_params.F90components/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/clubb/pdf_closure_module.F90components/cam/src/physics/clubb/calc_roots.F90components/cam/src/physics/silhs/silhs_importance_sample_module.F90components/cam/src/physics/clubb/diagnose_correlations_module.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/new_hybrid_pdf_main.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/variables_diagnostic_module.F90components/cam/src/physics/clubb/mean_adv.F90components/cam/src/physics/clubb/advance_windm_edsclrm_module.F90components/cam/src/physics/clubb/stats_sfc_module.F9080a96c8285e96a5f4b4464dd721ee61595f55ddf1599672444000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS used in this NGD CLUBB SILHS branch to version 1497311 from September 2, 2020. 2020-09-09 12:27:24 -050080a96c8285e96a5f4b4464dd721ee61595f55ddfI updated the version of CLUBB and SILHS used in this NGD CLUBB SILHS brancheditcomponents/cam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/src/physics/clubb/pdf_closure_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/stat_file_module.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90deletecomponents/cam/src/physics/clubb/variables_diagnostic_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/cam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/cam/src/physics/clubb/mixing_length.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/silhs/silhs_importance_sample_module.F90editcomponents/cam/src/physics/clubb/lapack_wrap.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/Skx_module.F90editcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/stats_sfc_module.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90deletecomponents/cam/src/physics/clubb/variables_prognostic_module.F90editcomponents/cam/src/physics/silhs/transform_to_pdf_module.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/cam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/cam/src/physics/clubb/stats_type_utilities.F90editcomponents/cam/src/physics/clubb/error_code.F90editcomponents/cam/src/physics/clubb/stats_zt_module.F90addcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/silhs/est_kessler_microphys_module.F90editcomponents/cam/src/physics/clubb/numerical_check.F90editcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/calc_roots.F90editcomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90addcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/corr_varnce_module.F90editcomponents/cam/src/physics/clubb/mean_adv.F90editcomponents/cam/src/physics/clubb/mono_flux_limiter.F90editcomponents/cam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/diffusion.F90components/cam/src/physics/silhs/parameters_silhs.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/homme/src/share/prim_driver_base.F90components/clm/src/biogeophys/SoilHydrologyType.F90components/cam/src/physics/cam/physpkg.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/cam/micro_mg_cam.F90diagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/error_code.F90diagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_e3sm_budget.pydiagnostic_v2_0/function_pick_out.pycomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90d85e70af3753d24276ab7da1db0ab94263a880e81599675486000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpload some modifications which allow better LBA. Conflicts: components/cam/src/physics/clubb/advance_clubb_core_module.F90 components/cam/src/physics/clubb/model_flags.F90 components/cam/src/physics/clubb/parameters_tunable.F90 2020-09-09 13:18:06 -0500d85e70af3753d24276ab7da1db0ab94263a880e8Upload some modifications which allow better LBA.editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/clm/src/biogeophys/SoilHydrologyType.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/cam/physpkg.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/cam/micro_mg_utils.F90editcomponents/homme/src/share/prim_driver_base.F90editdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/function_pick_out.pyeditcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/src/physics/cam/micro_mg_cam.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/bld/namelist_files/namelist_definition.xmleditdiagnostic_v2_0/draw_clubb_budget.pyeditcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditcomponents/cam/src/physics/clubb/error_code.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/clubb/advance_helper_module.F90editdiagnostic_v2_0/draw_e3sm_budget.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/CLUBB_diagnostics_template.htmldiagnostic_v2_0/draw_rain.pydiagnostic_v2_0/draw_clubb_skew.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/cam/micro_mg_cam.F90diagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_clubb_standard.pycomponents/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90diagnostic_v2_0/draw_silhs_standard.pydiagnostic_v2_0/draw_e3sm_budget.pycomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90eecc5a066a0469c6b8f60946a692f5a4b4f4104a1599676215000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpgrade budgets numlib and numice, as well as the diagnostic package. 2020-09-09 13:30:15 -0500eecc5a066a0469c6b8f60946a692f5a4b4f4104aUpgrade budgets numlib and numice, as well as the diagnostic package.editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editdiagnostic_v2_0/draw_e3sm_budget.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/draw_silhs_standard.pyeditcomponents/cam/src/physics/cam/micro_mg_utils.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditcomponents/cam/src/physics/cam/micro_mg_cam.F90editdiagnostic_v2_0/draw_rain.pyeditrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_helper_module.F90editcomponents/cam/src/physics/cam/micro_mg2_0.F90editdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_plots_hoz_3D.pyeditdiagnostic_v2_0/draw_clubb_skew.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_large_scale.pyeditdiagnostic_v2_0/CLUBB_diagnostics_template.htmleditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/macrop_driver.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/draw_rain.pycomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90components/cam/src/physics/cam/micro_mg_cam.F90b5061d85ac073f84681afddc2f965368076b54ba1599676861000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe added a simple detrainment scheme in clubb_intr.F90, in order to reduce SWCF over storm tack. We also added some new budget terms. 2020-09-09 13:41:01 -0500b5061d85ac073f84681afddc2f965368076b54baWe added a simple detrainment scheme in clubb_intr.F90, in order to reduce SWCF over storm tack.editcomponents/cam/src/physics/cam/macrop_driver.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/micro_mg_utils.F90editcomponents/cam/src/physics/cam/micro_mg2_0.F90editdiagnostic_v2_0/draw_rain.pyeditcomponents/cam/src/physics/clubb/clubb_api_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/micro_mg_cam.F90diagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/clubb_intr.F90diagnostic_v2_0/draw_rain.py939690072bd10cb8e131a5eb97a54f287f97f9601599677033000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNormal update of diagnostic_v2_0. 2020-09-09 13:43:53 -0500939690072bd10cb8e131a5eb97a54f287f97f960Normal update of diagnostic_v2_0.editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/draw_rain.pyeditcomponents/cam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/cam/clubb_intr.F90034980fa566d58101b025d7aaf0b2b00fa89f62b1599677189000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govchange clubb_ipdf_call_placement 2020-09-09 11:46:29 -0700034980fa566d58101b025d7aaf0b2b00fa89f62bchange clubb_ipdf_call_placementeditcomponents/cam/src/physics/cam/clubb_intr.F90diagnostic_v2_0/draw_clubb_standard.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/stats_variables.F90run_silhs_anvil_gust.cshdiagnostic_v2_0/CLUBB_diagnostics_template.htmlcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/micro_mg2_0.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/cam/micro_mg_cam.F90efef249ccd3b98dc6d6e5bdf94aab724172d9d4c1599677706000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommit for newbase run. issue #18 2020-09-09 13:55:06 -0500efef249ccd3b98dc6d6e5bdf94aab724172d9d4cCommit for newbase run. issue #18editcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/draw_clubb_standard.pyeditcomponents/cam/src/physics/clubb/stats_zm_module.F90editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditcomponents/cam/src/physics/cam/micro_mg_cam.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editdiagnostic_v2_0/CLUBB_diagnostics_template.htmlrun_silhs_anvil_gust.cshdiagnostic_v2_0/E3SM_CLUBB_diag.py196432f5829f6ef345d59635f293e3ffd68053cd1599677955000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommit for newbase. We added a conserved detrainment code, snowfrc=0.1, rhmini=0.8. #18 2020-09-09 13:59:15 -0500196432f5829f6ef345d59635f293e3ffd68053cdCommit for newbase. We added a conserved detrainment code, snowfrc=0.1, rhmini=0.8. #18editrun_silhs_anvil_gust.csheditdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/E3SM_CLUBB_diag.pyrun_silhs_anvil_gust.csh10e3fcb15f5d8ceb95f740a7609050ca067c5ecf1599678238000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn order to limite the tunable parameters, we changed the advance_clubb_core_module.F90 and run scritp. We can repeat the result of [caseB](https://carson.math.uwm.edu/larson-group/internal/E3SM_Global_output/output-20200316/) 2020-09-09 14:03:58 -050010e3fcb15f5d8ceb95f740a7609050ca067c5ecfIn order to limite the tunable parameters, we changed the advance_clubb_core_module.F90 and run scritp. We can repeat the result of [caseB](https://carson.math.uwm.edu/larson-group/internal/E3SM_Global_output/output-20200316/)editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditrun_silhs_anvil_gust.cshrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/parameters_tunable.F90afc7b5c1d5f5ba93e049e46ef2b1c671c623cd2b1599678468000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange a magic number of altitude_threshold, it allows a deeper mixing layer. issue #18 2020-09-09 14:07:48 -0500afc7b5c1d5f5ba93e049e46ef2b1c671c623cd2bChange a magic number of altitude_threshold, it allows a deeper mixing layer. issue #18editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/parameters_tunable.F90fdeaf2a5bcce364f7b96446a8e86f81a5ba016761599678639000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe increase `altitude_threshold` from 100 to 300m that makes a deeper mixing layar and solves fog problems over stratocumuls regimes. Issue #18. 2020-09-09 14:10:39 -0500fdeaf2a5bcce364f7b96446a8e86f81a5ba01676We increase `altitude_threshold` from 100 to 300m that makes a deeper mixing layar and solves fog problems over stratocumuls regimes. Issue #18.editcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_variables.F90run_silhs_anvil_gust.cshcime/src/externals/pio1/pio/piodarray.F90.incomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F9011f8c3d6eccb0f94c060690dece171008b56382c1599680502000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit can repeat simulation B, in https://github.com/larson-group/E3SM/issues/18#issuecomment-622158613 2020-09-09 14:41:42 -050011f8c3d6eccb0f94c060690dece171008b56382cThis commit can repeat simulation B, in https://github.com/larson-group/E3SM/issues/18#issuecomment-622158613editcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/model_flags.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/stats_zm_module.F90editcime/src/externals/pio1/pio/piodarray.F90.ineditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90diagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/variables_prognostic_module.F90components/cam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.csh5c8422f16aafd393cefd5ec0b316c5ef682adcbb1599680750000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI fixed a bug of PDF_PARAMS_FRZ. issue #18 Conflicts: components/cam/src/physics/clubb/variables_prognostic_module.F90 This file has already been removed in the latest version of CLUBB, as has the variable pdf_params_frz. 2020-09-09 14:45:50 -05005c8422f16aafd393cefd5ec0b316c5ef682adcbbI fixed a bug of PDF_PARAMS_FRZ. issue #18editcomponents/cam/src/physics/cam/clubb_intr.F90addcomponents/cam/src/physics/clubb/variables_prognostic_module.F90editdiagnostic_v2_0/draw_clubb_budget.pyeditrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/variables_prognostic_module.F90319672415fc247c6a94167f6dd4d4034c210a2e31599680867000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.edugit sucks 2020-09-09 14:47:47 -0500319672415fc247c6a94167f6dd4d4034c210a2e3git sucksdeletecomponents/cam/src/physics/clubb/variables_prognostic_module.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/mpas-ocean/cime_config/buildnmledb71390e0b4a26a2db3d20d4767e096058f45a81599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govAdds E3SM support for MPAS-Ocean/Sea-ice grid ECwISC30to60E1r2. 2020-09-09 14:49:46 -0500edb71390e0b4a26a2db3d20d4767e096058f45a8Adds E3SM support for MPAS-Ocean/Sea-ice grid ECwISC30to60E1r2.editcime_config/config_grids.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/cime_config/buildnmlcime_config/config_grids.xmldcc7afe90cbff5cd99e675d2b17734974bdde7f61599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govAdding JRA support to ECwISC30to60E1r2 grid 2020-09-09 14:49:46 -0500dcc7afe90cbff5cd99e675d2b17734974bdde7f6Adding JRA support to ECwISC30to60E1r2 grideditcime_config/config_grids.xmlcime_config/config_grids.xml4eb9adf71d520c6dc098374f5e557ff77a51bff81599680986000http://carson.math.uwm.edu/jenkins/user/dcomeaudcomeaudcomeau@lanl.govCorrecting paths for mapping files 2020-09-09 14:49:46 -05004eb9adf71d520c6dc098374f5e557ff77a51bff8Correcting paths for mapping fileseditcime_config/config_grids.xmldiagnostic_v2_0/draw_micro_budget.pyb1d65922fd10210a56320cd337fd45adf47e16d51599680990000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCreate draw_micro_budget.py 2020-09-09 14:49:50 -0500b1d65922fd10210a56320cd337fd45adf47e16d5Create draw_micro_budget.pyadddiagnostic_v2_0/draw_micro_budget.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_micro_budget.pydiagnostic_v2_0/CLUBB_diagnostics_template.html4f98b60e1c61872a1cf6a938fafacd117b52673c1599681015000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate CLUBB's Diagnostic Pack 2020-09-09 14:50:15 -05004f98b60e1c61872a1cf6a938fafacd117b52673cUpdate CLUBB's Diagnostic Packeditdiagnostic_v2_0/draw_micro_budget.pyeditdiagnostic_v2_0/CLUBB_diagnostics_template.htmleditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditdiagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/E3SM_CLUBB_diag.py51f430e54a0794a80cf604b1c09448ef1cd02ebc1599681037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate E3SM_CLUBB_diag.py 2020-09-09 14:50:37 -050051f430e54a0794a80cf604b1c09448ef1cd02ebcUpdate E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/mpas-source032563f081bdde55a02706f27a85ca986b7ab2bd1599682567000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate MPAS-Source: COMPASS and documentation only 2020-09-09 13:16:07 -0700032563f081bdde55a02706f27a85ca986b7ab2bdUpdate MPAS-Source: COMPASS and documentation onlyeditcomponents/mpas-sourcecomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90f01f2cf0d6a9771b01d032e692b0b86ecd12f0e01599684366000http://carson.math.uwm.edu/jenkins/user/zheng7zheng7zheng7@llnl.govclean up unnecessary comments 2020-09-09 13:46:06 -0700f01f2cf0d6a9771b01d032e692b0b86ecd12f0e0clean up unnecessary commentseditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/clm/src/cpl/lnd_import_export.F90components/clm/src/main/lnd2atmMod.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/model_flags.F90cime/config/e3sm/machines/config_machines.xmlcomponents/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/clubb/advance_helper_module.F90components/clm/src/biogeophys/LakeFluxesMod.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/clm/src/biogeophys/FrictionVelocityMod.F90components/cam/src/physics/cam/clubb_intr.F90cime/config/e3sm/machines/config_compilers.xmlcomponents/clm/src/biogeophys/CanopyTemperatureMod.F90components/cam/cime_config/config_compsets.xmlcime/config/e3sm/machines/config_batch.xmlcomponents/clm/src/biogeophys/CanopyFluxesMod.F90e2dbbef293de6c705410b86c92c33b774c34c8fe1599687197000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe added a new formula for [invrs_tau_xp2](https://github.com/larson-group/E3SM/issues/18#issuecomment-636089345). The results of this commit is shown [here](https://github.com/larson-group/E3SM/issues/18#issuecomment-638331975). 2020-09-09 16:33:17 -0500e2dbbef293de6c705410b86c92c33b774c34c8feWe added a new formula for [invrs_tau_xp2](https://github.com/larson-group/E3SM/issues/18#issuecomment-636089345). The results of this commit is shown [here](https://github.com/larson-group/E3SM/issues/18#issuecomment-638331975).editcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/clm/src/cpl/lnd_import_export.F90editcomponents/clm/src/main/lnd2atmMod.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/cime_config/config_compsets.xmleditcime/config/e3sm/machines/config_compilers.xmleditcomponents/cam/src/physics/clubb/surface_varnce_module.F90editcomponents/cam/src/physics/clubb/advance_helper_module.F90editcime/config/e3sm/machines/config_batch.xmleditcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/clm/src/biogeophys/FrictionVelocityMod.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/clm/src/biogeophys/CanopyTemperatureMod.F90editcime/config/e3sm/machines/config_machines.xmleditcomponents/clm/src/biogeophys/CanopyFluxesMod.F90editcomponents/cam/src/physics/clubb/numerical_check.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/clm/src/biogeophys/LakeFluxesMod.F90components/cam/src/physics/clubb/model_flags.F904a20e68380e1cf2d0a1d11a2ed6c4b2ad43fd8c61599687302000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFinishing off the previous cherry-pick/merge. 2020-09-09 16:35:02 -05004a20e68380e1cf2d0a1d11a2ed6c4b2ad43fd8c6Finishing off the previous cherry-pick/merge.editcomponents/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90run_silhs_anvil_gust.csh968ffe1c695c928254a7a55969cf5ed8ab1a641d1599687555000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit can reproduce simulation C in https://github.com/larson-group/E3SM/issues/18#issuecomment-640086590. 2020-09-09 16:39:15 -0500968ffe1c695c928254a7a55969cf5ed8ab1a641dThis commit can reproduce simulation C in https://github.com/larson-group/E3SM/issues/18#issuecomment-640086590.editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90run_silhs_anvil_gust.csh0c61e8402c37ad556e6fab8f3b111ce3b76547a81599687605000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe tuned tau and its equations. This tuning has better ITCZ and a stronger contrast between SC and CU. Results is shown in D of https://github.com/larson-group/E3SM/issues/18#issuecomment-640708110 2020-09-09 16:40:05 -05000c61e8402c37ad556e6fab8f3b111ce3b76547a8We tuned tau and its equations. This tuning has better ITCZ and a stronger contrast between SC and CU. Results is shown in D of https://github.com/larson-group/E3SM/issues/18#issuecomment-640708110editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/mpas-ocean/cime_config/buildnml32058b86bd7d80326c97b53563131b7c3c64aab61599687630000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govScript support for new EC30to60E2v2 ocean mesh 2020-09-09 16:40:30 -050032058b86bd7d80326c97b53563131b7c3c64aab6Script support for new EC30to60E2v2 ocean mesheditcomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcime_config/config_grids.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmldiagnostic_v2_0/function_cal_mean.pyec1160128c09e9d47feea881b24a4ab4bd96e37c1599687640000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_cal_mean.py 2020-09-09 16:40:40 -0500ec1160128c09e9d47feea881b24a4ab4bd96e37cUpdate function_cal_mean.pyeditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/function_cal_mean.py54133e3e41521febe0d0f421e137c302a38cfc4c1599687666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduupdate function_cal_mean.py for handling muli year 2020-09-09 16:41:06 -050054133e3e41521febe0d0f421e137c302a38cfc4cupdate function_cal_mean.py for handling muli yeareditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.py697b87fb1b03fa9e6693ae0e3987123b220650551599687697000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate E3SM_CLUBB_diag.py 2020-09-09 16:41:37 -0500697b87fb1b03fa9e6693ae0e3987123b22065055Update E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/function_cal_mean.pya07960211f9b973ab030997dd2a78e15d40af6e71599687727000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_cal_mean.py 2020-09-09 16:42:07 -0500a07960211f9b973ab030997dd2a78e15d40af6e7Update function_cal_mean.pyeditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/function_pick_out.py10b89327c504a7feaceb5492b786f04c6b21c27d1599687756000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate function_pick_out.py 2020-09-09 16:42:36 -050010b89327c504a7feaceb5492b786f04c6b21c27dUpdate function_pick_out.pyeditdiagnostic_v2_0/function_pick_out.pydiagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_clubb_standard.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90diagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/stats_variables.F90diagnostic_v2_0/draw_plots_hoz_2D.pyrun_silhs_anvil_gust.cshdiagnostic_v2_0/function_cal_mean.pycomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/clubb/stats_zm_module.F905f30fc08891af99c42f19be4283528e037f9c5ca1599697582000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWe make a new Richardson related formula for invrs_tau_wpxp, in order to remove the `5`. This change makes a good distinction between CU and SC, result can be found in D of [plots](https://github.com/larson-group/E3SM/issues/18#issuecomment-657628303). 2020-09-09 19:26:22 -05005f30fc08891af99c42f19be4283528e037f9c5caWe make a new Richardson related formula for invrs_tau_wpxp, in order to remove the `5`. This change makes a good distinction between CU and SC, result can be found in D of [plots](https://github.com/larson-group/E3SM/issues/18#issuecomment-657628303).editdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyeditrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/function_cal_mean.pyeditcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/clubb/stats_zm_module.F90diagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.py9fade9c3a2f2ce8957106623bad1b0ba959f22b71599698029000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate CLUBB's diagnostic package. Now, making average for multiple years is allowed. Please set `nyear` in E3SM_CLUBB_diag.py. 2020-09-09 19:33:49 -05009fade9c3a2f2ce8957106623bad1b0ba959f22b7Update CLUBB's diagnostic package. Now, making average for multiple years is allowed. Please set `nyear` in E3SM_CLUBB_diag.py.editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/draw_clubb_budget.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/advance_helper_module.F90components/cam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmldiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/clubb/parameters_tunable.F90run_silhs_anvil_gust.cshdiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/function_cal_mean.py5466328b092ed9694e8dabfbeb58ad91426080241599698337000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClean up the codes of tau and Richardson number. issue #18 2020-09-09 19:38:57 -05005466328b092ed9694e8dabfbeb58ad9142608024Clean up the codes of tau and Richardson number. issue #18editcomponents/cam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmleditcomponents/cam/src/physics/clubb/advance_helper_module.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_large_scale.pyeditrun_silhs_anvil_gust.csheditdiagnostic_v2_0/function_cal_mean.pyeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/cam/micro_mg_utils.F90components/cam/src/physics/clubb/precipitation_fraction.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/micro_mg2_0.F901711c4eb272a9b67c4df3b139e0e88d9eff77d871599698391000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFor EAM_tau and ZM. Issue #18 2020-09-09 19:39:51 -05001711c4eb272a9b67c4df3b139e0e88d9eff77d87For EAM_tau and ZM. Issue #18editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/src/physics/cam/micro_mg_utils.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/cam/micro_mg2_0.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90tau_clean_anvil.cshe59da3ae66ccd32cdbaedc1a0f9d8f86331c42e91599698418000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA run script for running tau and ZM. Issue #18 2020-09-09 19:40:18 -0500e59da3ae66ccd32cdbaedc1a0f9d8f86331c42e9A run script for running tau and ZM. Issue #18addtau_clean_anvil.cshmake_e3sm_atm_anvil.cshcompile_run_script_edison.cshmake_e3sm_atm_cori.cshrun_e3sm_anvil.cshrun_e3sm_anvil_v2.cshmake_e3sm_atm.csh69087d0d0a6c1981cd4058ff73a79825f84c8cba1599698439000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduClean up. 2020-09-09 19:40:39 -050069087d0d0a6c1981cd4058ff73a79825f84c8cbaClean up.deletemake_e3sm_atm_anvil.cshdeleterun_e3sm_anvil.cshdeleterun_e3sm_anvil_v2.cshdeletecompile_run_script_edison.cshdeletemake_e3sm_atm_cori.cshdeletemake_e3sm_atm.cshrun_silhs_anvil_gust.csh7a59b326837c688999723843c860a3578b7939f91599698463000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduEAM_tau_silhs run script. 2020-09-09 19:41:03 -05007a59b326837c688999723843c860a3578b7939f9EAM_tau_silhs run script.editrun_silhs_anvil_gust.cshrun_silhs_anvil_gust.csh0d49036b57def3d4f41fbe14fb4cc628b1f1e5611599698490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRepeat https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/eam_tau.n2p3_c151_pre1_fallp25_sgv_1d/ 2020-09-09 19:41:30 -05000d49036b57def3d4f41fbe14fb4cc628b1f1e561Repeat https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/eam_tau.n2p3_c151_pre1_fallp25_sgv_1d/editrun_silhs_anvil_gust.cshremap/make_climo.pyremap/function_cal_mean.pyrun_silhs_anvil_gust.cshremap/remap_ne30.cshremap/remap.cshremap/remap_ne30_3h.cshremap/remap_3h.csh1ef7a5ceed2a4c35a12bbcac339a04787d1bef991599698514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemaping the SE to Lat-Lon 2020-09-09 19:41:54 -05001ef7a5ceed2a4c35a12bbcac339a04787d1bef99Remaping the SE to Lat-Lonaddremap/remap_3h.cshaddremap/remap_ne30.cshaddremap/remap.cshaddremap/make_climo.pyeditrun_silhs_anvil_gust.cshaddremap/remap_ne30_3h.cshaddremap/function_cal_mean.pydiagnostic_v2_0/function_cal_mean.pydbf99ef481e94e909c9ae0cc293ea2915f8de8c71599698689000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating function_cal_mean.py to match exactly what is in Zhun's archived NGD CLUBB SILHS directory. 2020-09-09 19:44:49 -0500dbf99ef481e94e909c9ae0cc293ea2915f8de8c7Updating function_cal_mean.py to match exactly what is in Zhun'seditdiagnostic_v2_0/function_cal_mean.pyREPLAY/run_e3sm_anvil_gust.cshrun_silhs_anvil_gust.cshREPLAY/README.txt733b9482f763f946218a436244fdad48dda992131599699124000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRun script for making global IOP files. 2020-09-09 19:52:04 -0500733b9482f763f946218a436244fdad48dda99213Run script for making global IOP files.addREPLAY/README.txtaddREPLAY/run_e3sm_anvil_gust.csheditrun_silhs_anvil_gust.cshrun_silhs_anvil_gust.csha65eda984626065417a5eafda62dae13ee787a721599699158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBack to no-sgv run. 2020-09-09 19:52:38 -0500a65eda984626065417a5eafda62dae13ee787a72Back to no-sgv run.editrun_silhs_anvil_gust.cshREPLAY/README.txt630dc06db892ec269c8c96d6b85dbf064d804a3f1599699184000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate Readme 2020-09-09 19:53:04 -0500630dc06db892ec269c8c96d6b85dbf064d804a3fUpdate ReadmeeditREPLAY/README.txtrun_silhs_anvil_gust.csh327658e08d899fd6d85296fbbab821b37afb43801599717076000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI modified the run_silhs_anvil_gust.csh runscript so that it runs for me on Anvil. 2020-09-10 00:51:16 -0500327658e08d899fd6d85296fbbab821b37afb4380I modified the run_silhs_anvil_gust.csh runscript so that it runseditrun_silhs_anvil_gust.cshpostprocessing/AMWG/remap_make_climo.cshpostprocessing/AMWG/diag140804.cshpostprocessing/AMWG/run_diag140804.cshpostprocessing/AMWG/climo_nco.shc2fb8c77cf8da01b7c033b81fdfe1aa780a43d2c1599717104000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the files necessary to run the AMWG postprocessing scripts on E3SM output files. 2020-09-10 00:51:44 -0500c2fb8c77cf8da01b7c033b81fdfe1aa780a43d2cI am adding the files necessary to run the AMWG postprocessing scripts onaddpostprocessing/AMWG/climo_nco.shaddpostprocessing/AMWG/remap_make_climo.cshaddpostprocessing/AMWG/diag140804.cshaddpostprocessing/AMWG/run_diag140804.cshdiagnostic_v2_0/E3SM_CLUBB_diag.py4c74649916c041d790b758b2db07a0017a6117cb1599717128000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWithin the context of my NGD CLUBB SILHS directory, I have changed the names, obsfilepath, etc., in E3SM_CLUBB_diag.py to be names and paths that work for me. 2020-09-10 00:52:08 -05004c74649916c041d790b758b2db07a0017a6117cbWithin the context of my NGD CLUBB SILHS directory, I have changed the names,editdiagnostic_v2_0/E3SM_CLUBB_diag.pyremap/make_climo.pyremap/remap.csh04351851f51480f71cc03a2f8ecb891bd40b6a941599717158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI committed some changes to my personal NGD CLUBB SILHS directory to set up for E3SM diags using my directory paths. 2020-09-10 00:52:38 -050004351851f51480f71cc03a2f8ecb891bd40b6a94I committed some changes to my personal NGD CLUBB SILHS directory to set upeditremap/make_climo.pyeditremap/remap.cshremap/remap_ne30.csh32895b80c4299b470d1ec24dc764f89684f29dcf1599717180000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI also changed the ne30 remapping file in my NGD CLUBB SILHS branch to use my specific paths. 2020-09-10 00:53:00 -050032895b80c4299b470d1ec24dc764f89684f29dcfI also changed the ne30 remapping file in my NGD CLUBB SILHS brancheditremap/remap_ne30.cshpostprocessing/e3sm_diags_env.ymlpostprocessing/run_e3sm_diags.pyda3bec3fec2d23fe62305de8e70c21f57d3107601599717206000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the environment file and run script for E3SM diags. 2020-09-10 00:53:26 -0500da3bec3fec2d23fe62305de8e70c21f57d310760I added the environment file and run script for E3SM diags.addpostprocessing/e3sm_diags_env.ymladdpostprocessing/run_e3sm_diags.pyremap/remap_3h.cshremap/remap_ne30_3h.csh89c504822f84e3e75b4bdb89cdf530473a84aef71599717233000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am also changing these remapping files over to my directory paths. 2020-09-10 00:53:53 -050089c504822f84e3e75b4bdb89cdf530473a84aef7I am also changing these remapping files over to my directory paths.editremap/remap_3h.csheditremap/remap_ne30_3h.cshpostprocessing/AMWG/remap_make_climo.cshremap/make_climo.pypostprocessing/run_e3sm_diags.pydiagnostic_v2_0/E3SM_CLUBB_diag.pypostprocessing/AMWG/remap_make_climo_ne30.csh015d577ad11966e886ede5c2a9915211ecfd8bfc1599717261000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMinor changes to postprocessing files. 2020-09-10 00:54:21 -0500015d577ad11966e886ede5c2a9915211ecfd8bfcMinor changes to postprocessing files.editpostprocessing/run_e3sm_diags.pyeditpostprocessing/AMWG/remap_make_climo.cshaddpostprocessing/AMWG/remap_make_climo_ne30.csheditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditremap/make_climo.pycomponents/cam/src/physics/cam/clubb_intr.F90c9b9ebfab024efa7d1e26cf0f4ce6b3492b331ef1599724823000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated E3SM to match recent changes made to CLUBB code. 2020-09-10 03:00:23 -0500c9b9ebfab024efa7d1e26cf0f4ce6b3492b331efI updated E3SM to match recent changes made to CLUBB code.editcomponents/cam/src/physics/cam/clubb_intr.F90nightly_test/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90eeb6b1aa17b832cb07d6506162212a183b80e8c41599724900000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI removed l_use_ice_latent from the code, following recent changes to CLUBB. 2020-09-10 03:01:40 -0500eeb6b1aa17b832cb07d6506162212a183b80e8c4I removed l_use_ice_latent from the code, following recent changes to CLUBB.editnightly_test/clubb_intr.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F902ea521aec916f5cebdd5cfc60a88bf926884c4941599724927000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating clubb_intr.F90 and subcol_SILHS.F90 based on recent changes to CLUBB code. 2020-09-10 03:02:07 -05002ea521aec916f5cebdd5cfc60a88bf926884c494I am updating clubb_intr.F90 and subcol_SILHS.F90 based on recenteditcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/clubb_intr.F90faf2d25795506387337126eee3d2350458c649351599724951000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating E3SM-CLUBB for the addition of the l_partial_upwind_wp3 flag to CLUBB's config flags. 2020-09-10 03:02:31 -0500faf2d25795506387337126eee3d2350458c64935I am updating E3SM-CLUBB for the addition of the l_partial_upwind_wp3 flageditcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F908fc6a01018896ccde798a69a6506d2ad204c7db61599725071000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the call to setup_pdf_parameters_api to pass in khzm, following recent changes to CLUBB. I also needed to move the loop that populates khzm (CLUBB levels) from khzm_in (E3SM levels) to before the call to setup_pdf_parameters_api. 2020-09-10 03:04:31 -05008fc6a01018896ccde798a69a6506d2ad204c7db6I altered the call to setup_pdf_parameters_api to pass in khzm,editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F9042c334c3b673c355e933caf92b4faa9e8e7fe3be1599725091000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging code to work with newest silhs update. larson-group/cam#129 2020-09-10 03:04:51 -050042c334c3b673c355e933caf92b4faa9e8e7fe3beChanging code to work with newest silhs update. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F906176efe7142eab8b679ed03c1eb5e7178ea5def81599725133000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduPartially reverting last commit. The solution was implemented in silhs_api. larson-group/cam#129 2020-09-10 03:05:33 -05006176efe7142eab8b679ed03c1eb5e7178ea5def8Partially reverting last commit. The solution was implemented in silhs_api. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/cam/subcol_SILHS.F900c03264d770b10fce936b2539baac9e6786d26e81599725162000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMaking compatible with newest clubb changes. larson-group/cam#129 2020-09-10 03:06:02 -05000c03264d770b10fce936b2539baac9e6786d26e8Making compatible with newest clubb changes. larson-group/cam#129editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2005.txtcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2015_LUH2.txtcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.common36d61137a8389e458ca900f1ecfd821af7596b481599761979000http://carson.math.uwm.edu/jenkins/user/adivittorioadivittorioadivittorio@lbl.govBug fixes for land use translator and surface file creation Fixed an automatic file naming bug to remove an extra creation date. Fixed a makefile bug for a fortran compiler flag. Deleted two unnecessary files Changes to be committed: modified: ../land_use_translator/updateannuallanduse_v2.c deleted: landuse_timeseries_hist_simyr1850-2005.txt deleted: landuse_timeseries_hist_simyr1850-2015_LUH2.txt modified: src/Makefile.common 2020-09-10 11:19:39 -070036d61137a8389e458ca900f1ecfd821af7596b48Bug fixes for land use translator and surface file creationdeletecomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2005.txtdeletecomponents/clm/tools/clm4_5/mksurfdata_map/landuse_timeseries_hist_simyr1850-2015_LUH2.txteditcomponents/clm/tools/clm4_5/mksurfdata_map/src/Makefile.commoneditcomponents/clm/tools/clm4_5/land_use_translator/updateannuallanduse_v2.ccomponents/mpas-ocean/cime_config/buildnml131265472d4673ec94c936b67d9dbe3a7c8d1bdb1599762160000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate the EC30to60E2r2 salinity restoring file name 2020-09-10 13:22:40 -0500131265472d4673ec94c936b67d9dbe3a7c8d1bdbUpdate the EC30to60E2r2 salinity restoring file nameeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml38b4edbfa2816d1d2922f5d6b7632d63756cd5251599762254000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet GM-kappa to 600 for EC30to60E2r2 G-cases 2020-09-10 13:24:14 -050038b4edbfa2816d1d2922f5d6b7632d63756cd525Set GM-kappa to 600 for EC30to60E2r2 G-caseseditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeac74ceecd34b2a971660e5f36121fc67486ed67a1599762621000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comcmake changes summit 2020-09-10 14:30:21 -0400ac74ceecd34b2a971660e5f36121fc67486ed67acmake changes summiteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmake94e6bdb812edd311dac339fa9acac2f1aa941efa1599764029000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comcmake change summit 2020-09-10 14:53:49 -040094e6bdb812edd311dac339fa9acac2f1aa941efacmake change summiteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/cam/src/physics/clubb/parameters_tunable.F90d819e97882d2f40733bb80d18d50651367d3b74d1599766528000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered parameters_tunable.F90 so that it looks more like the parameters_tunable.F90 that's in the CLUBB master repo again. It got a little jacked up from the merges. 2020-09-10 14:35:28 -0500d819e97882d2f40733bb80d18d50651367d3b74dI altered parameters_tunable.F90 so that it looks more like theeditcomponents/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/crm/crm_history.F90793e1146baf409b7d00519cc1e851490be1a60db1599769530000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govClean up crm_history_init modified: components/cam/src/physics/crm/crm_history.F90 2020-09-10 13:25:30 -0700793e1146baf409b7d00519cc1e851490be1a60dbClean up crm_history_initeditcomponents/cam/src/physics/crm/crm_history.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/clubb_api_module.F90e9241c8459bb2a9d3d1dc6c55b204cea01bbdbe51599771678000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing compilation errors in this branch. 2020-09-10 16:01:18 -0500e9241c8459bb2a9d3d1dc6c55b204cea01bbdbe5Fixing compilation errors in this branch.editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/sam/crm_module.F906a84b2c651f669218015d576816a7edb4ec5d0ba1599772134000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix MMF timing factor output Previously this output variable TIMINGF was always 1 because the value increment wasin the wrong place modified: sam/crm_module.F90 modified: samxx/timeloop.cpp 2020-09-10 14:08:54 -07006a84b2c651f669218015d576816a7edb4ec5d0baFix MMF timing factor outputeditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cice/cime_config/config_component.xmlcomponents/elm/bld/configure325ebd80c8bca32e7a1e8ff6560840e4973ab6ff1599773424000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMinor clm to elm changes. Change src.clm to src.elm in configure (pointed out by GautumB). Chnage one ref to CLM in old CICE config_component. 2020-09-10 16:30:24 -0500325ebd80c8bca32e7a1e8ff6560840e4973ab6ffMinor clm to elm changes.editcomponents/cice/cime_config/config_component.xmleditcomponents/elm/bld/configurecomponents/cam/src/physics/crm/samxx/timeloop.cppcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/crm_physics.F90components/cam/src/physics/crm/samxx/vars.hcomponents/cam/src/physics/crm/samxx/vars.cppcomponents/cam/src/physics/crm/samxx/crm.cppcomponents/cam/src/physics/crm/crm_output_module.F90components/cam/src/physics/crm/samxx/post_timeloop.cppcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/samxx/fortran/crm_output_module.F90components/cam/src/physics/crm/crm_history.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/pre_timeloop.cppb993ac82cdb1d9b42acf8edee369e5eb3a42c01d1599774606000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange timing_factor to subcycle_factor Also change the history variable from TIMINGF to MMF_SUBCYCLE_FAC modified: crm_history.F90 modified: crm_output_module.F90 modified: crm_physics.F90 modified: sam/crm_module.F90 modified: samxx/cpp_interface_mod.F90 modified: samxx/crm.cpp modified: samxx/fortran/crm_module.F90 modified: samxx/fortran/crm_output_module.F90 modified: samxx/post_timeloop.cpp modified: samxx/pre_timeloop.cpp modified: samxx/test/cpp_driver.F90 modified: samxx/test/fortran_driver.F90 modified: samxx/timeloop.cpp modified: samxx/vars.cpp modified: samxx/vars.h 2020-09-10 14:50:06 -0700b993ac82cdb1d9b42acf8edee369e5eb3a42c01dChange timing_factor to subcycle_factoreditcomponents/cam/src/physics/crm/crm_history.F90editcomponents/cam/src/physics/crm/crm_physics.F90editcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/crm.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/fortran/crm_output_module.F90editcomponents/cam/src/physics/crm/crm_output_module.F90editcomponents/cam/src/physics/crm/samxx/vars.heditcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90editcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/fortran/crm_module.F90editcomponents/cam/src/physics/crm/samxx/cpp_interface_mod.F90cime19ad35e9a0fa715b08588dd5ccf402d8fd2f88d41599774872000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate CIME to master to bring in PR#3701 from ESMCI/jonbob/add-new-ocnice-grids 2020-09-10 16:54:32 -050019ad35e9a0fa715b08588dd5ccf402d8fd2f88d4Update CIME to master to bring in PR#3701 from ESMCI/jonbob/add-new-ocnice-gridseditcimecomponents/cam/src/physics/crm/crm_history.F90components/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_cam86056ad9e5309932f22b3085532fe3e07180b5f81599775899000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange SP* history variables to MMF_* modified: components/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_cam modified: components/cam/src/physics/crm/crm_history.F90 2020-09-10 15:11:39 -070086056ad9e5309932f22b3085532fe3e07180b5f8Change SP* history variables to MMF_*editcomponents/cam/src/physics/crm/crm_history.F90editcomponents/cam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_camcomponents/homme/src/preqx_kokkos/cxx/HyperviscosityFunctorImpl.cppcomponents/homme/src/share/cxx/EulerStepFunctorImpl.hppb0d93c139a8d4ece4f0e100901046071cde1cbdc1599777394000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing errors reported by valgrind. One (ESF) was relatively innocuous, but the other (HVF) caused the code to crash if the vector length was larger than 1. 2020-09-10 16:36:34 -0600b0d93c139a8d4ece4f0e100901046071cde1cbdcHomme: fixing errors reported by valgrind.editcomponents/homme/src/share/cxx/EulerStepFunctorImpl.hppeditcomponents/homme/src/preqx_kokkos/cxx/HyperviscosityFunctorImpl.cppcomponents/homme/src/share/cxx/prim_driver.cpp0d9c93f9a3d9ca7f14810051b13f36aa71b4ca5e1599794572000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing bug related to diagnostic calls in prim_driver.cpp 2020-09-10 21:22:52 -06000d9c93f9a3d9ca7f14810051b13f36aa71b4ca5eHomme: fixing bug related to diagnostic calls in prim_driver.cppeditcomponents/homme/src/share/cxx/prim_driver.cppcomponents/homme/cmake/machineFiles/anvil-bfb.cmake0c0b56600c728067f8732930efcdc6dc767d63611599797415000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comanvil cmake changes 2020-09-10 23:10:15 -05000c0b56600c728067f8732930efcdc6dc767d6361anvil cmake changeseditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/src/preqx_kokkos/cxx/Diagnostics.cppcomponents/homme/src/preqx_kokkos/cxx/CamForcing.cppd4c61024ba87ffd058a6c7711d651a11944322a51599797772000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: couple of fixes in preqx_kokkos to match preqx implementation - removed ps_v from diagnostics routines - when applying ps forcing, compute forcing without dt factor 2020-09-10 22:16:12 -0600d4c61024ba87ffd058a6c7711d651a11944322a5Homme: couple of fixes in preqx_kokkos to match preqx implementationeditcomponents/homme/src/preqx_kokkos/cxx/CamForcing.cppeditcomponents/homme/src/preqx_kokkos/cxx/Diagnostics.cppcime_config/allactive/config_pesall.xmlcomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmlcomponents/mpas-ocean/cime_config/buildnml9470716c6be80e92323a15b1de9f67763003ef1f1599799274000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds ICG support for EC30to60E2r02 2020-09-10 23:41:14 -05009470716c6be80e92323a15b1de9f67763003ef1fadds ICG support for EC30to60E2r02editcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/homme/src/preqx_kokkos/config.h.cmake.incomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/preqx/config.h.cmake.incomponents/homme/src/preqx/CMakeLists.txt5be0fdd8b4c3192fc8135f9a2f5ca565853158261599807904000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Adding HOMMEXX_BFB_TESTING to preqx and preqx_kokkos config files 2020-09-11 01:05:04 -06005be0fdd8b4c3192fc8135f9a2f5ca56585315826Homme: Adding HOMMEXX_BFB_TESTING to preqx and preqx_kokkos config fileseditcomponents/homme/src/preqx/config.h.cmake.ineditcomponents/homme/src/preqx_kokkos/config.h.cmake.ineditcomponents/homme/src/preqx/CMakeLists.txteditcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppac5ae5e448e053ce1044104dc1ead0891053255c1599808081000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in preqx_kokkos caar functor The eta_dot_dpdn buffer was used incorrectly when computing dp3d. In particular, we were allowing an uninited value (last interface) to pollute the last midpoint during the final dp3d update. Note: this bug showed up only if NUM_LEV=NUM_LEV_P. 2020-09-11 01:08:01 -0600ac5ae5e448e053ce1044104dc1ead0891053255cHomme: bug fix in preqx_kokkos caar functoreditcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppcomponents/cam/bld/namelist_files/namelist_definition.xml056f587727a79c92cddaa09a0ac04742b14a8f6a1599811492000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI committed all the updated CLUBB namelist variables to namelist_definition.xml. 2020-09-11 03:04:52 -0500056f587727a79c92cddaa09a0ac04742b14a8f6aI committed all the updated CLUBB namelist variables toeditcomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/compose/CMakeLists.txt53cac64928e77268556124bc8ed8bad2e0ef9a121599844020000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comtypo 2020-09-11 12:07:00 -050053cac64928e77268556124bc8ed8bad2e0ef9a12typoeditcomponents/homme/src/share/compose/CMakeLists.txtcomponents/mpas-source457e040c11242d8eb5df5a9e7d6f8ba8558a30f21599845984000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: GM/Redi and surface buoyancy fixes 2020-09-11 10:39:44 -0700457e040c11242d8eb5df5a9e7d6f8ba8558a30f2Update mpas-source: GM/Redi and surface buoyancy fixeseditcomponents/mpas-sourcecomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist74dca88c89ddba4f3fb90519d4a698b0ae4622ed1599848488000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate to E3SM scrpts corresponding to mpas-ocean Registry changes 2020-09-11 13:21:28 -050074dca88c89ddba4f3fb90519d4a698b0ae4622edUpdate to E3SM scrpts corresponding to mpas-ocean Registry changeseditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90postprocessing/AMWG/diag140804.cshdiagnostic_v2_0/E3SM_CLUBB_diag.pytau_clean_anvil.cshrun_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/stats_zm_module.F904a037f46ee51613c70e265350413560e5c5f81ff1599850357000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanges to make everything run. 2020-09-11 13:52:37 -05004a037f46ee51613c70e265350413560e5c5f81ffChanges to make everything run.editdiagnostic_v2_0/E3SM_CLUBB_diag.pyedittau_clean_anvil.csheditrun_silhs_anvil_gust.csheditpostprocessing/AMWG/diag140804.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F90f6a2d379f87d954cc0e9ca27225d57e3ff4eb2b51599851382000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBorrowing code from the master for namelist variables and printing of parameters and flags. 2020-09-11 14:09:42 -0500f6a2d379f87d954cc0e9ca27225d57e3ff4eb2b5Borrowing code from the master for namelist variables and printingeditcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/cam/subcol_SILHS.F9060208486d315d03df6b5d86017861cac9e8bfe3a1599852659000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a compilation error. 2020-09-11 14:30:59 -050060208486d315d03df6b5d86017861cac9e8bfe3aFixed a compilation error.editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml766bfc3aafb1406726dce7626cc61f51e02a27471599856016000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet mocStreamfunctionAM off by default for new EC30to60E2r2 mesh 2020-09-11 15:26:56 -0500766bfc3aafb1406726dce7626cc61f51e02a2747Set mocStreamfunctionAM off by default for new EC30to60E2r2 mesheditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/allactive/config_pesall.xmlcomponents/mpas-source5d1d20924b52672b28b61b018842d9be11d135901599856523000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds default layout for EC6030E2r2 for compy 2020-09-11 15:35:23 -05005d1d20924b52672b28b61b018842d9be11d13590adds default layout for EC6030E2r2 for compyeditcime_config/allactive/config_pesall.xmleditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmlcomponents/mpas-sourcea7b566099abae6311c0e201f19ddd64b8f936df81599858671000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comRevert "adds default layout for EC6030E2r2 for compy" This reverts commit 5d1d20924b52672b28b61b018842d9be11d13590. 2020-09-11 16:11:11 -0500a7b566099abae6311c0e201f19ddd64b8f936df8Revert "adds default layout for EC6030E2r2 for compy"editcomponents/mpas-sourceeditcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml435744450e45272d901e6bfd60bb5ae25688ec851599858732000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comadds default layout for EC6030E2r2 for compy 2020-09-11 16:12:12 -0500435744450e45272d901e6bfd60bb5ae25688ec85adds default layout for EC6030E2r2 for compyeditcime_config/allactive/config_pesall.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_batch.xmlcime_config/machines/config_machines.xmld9cdfe1fd9713fb9909f7f3a6f365e32ba936c1b1599861360000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable E3SM on Tulip 2020-09-11 16:56:00 -0500d9cdfe1fd9713fb9909f7f3a6f365e32ba936c1bEnable E3SM on Tulipeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_batch.xmleditcime_config/machines/config_machines.xmlcomponents/cam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.csh4d7bd871f537b4f71c885d2bba3ebe0dcf4fe77a1599933435000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making the remaining changes to parameter values necessary to reproduce the parameter settings that are found in Zhun's branch (which uses an older version of CLUBB). 2020-09-12 12:57:15 -05004d7bd871f537b4f71c885d2bba3ebe0dcf4fe77aI am making the remaining changes to parameter values necessary toeditcomponents/cam/src/physics/cam/clubb_intr.F90editrun_silhs_anvil_gust.cshcomponents/cam/src/physics/cam/subcol_SILHS.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90d9ec1c8503a6dab58003b086b7ddf386656d88d31599933592000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing the changes necessary to bring back the Lscale averaging code that used to be found in SILHS. This is being done because Zhun's results were based on using this code, and we went to check that the new results (after the CLUBB/SILHS upgrade) match the old results as closely as possible. This change can always be reverted later. 2020-09-12 12:59:52 -0500d9ec1c8503a6dab58003b086b7ddf386656d88d3I am committing the changes necessary to bring back the Lscale averagingeditcomponents/cam/src/physics/cam/subcol_SILHS.F90editcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90cime_config/tests.pycime_config/config_archive.xmla25869e457eaad86697dc3a5638a8e583d0ecb8e1600024214000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govA few more clm to elm mods Edit config_archive.xml to define elm. Change MALI test from CLM45 to ELM in tests.py 2020-09-13 14:10:14 -0500a25869e457eaad86697dc3a5638a8e583d0ecb8eA few more clm to elm modseditcime_config/tests.pyeditcime_config/config_archive.xmlcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_clmcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_elmcime_config/testmods_dirs/allactive/v1cmip6/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_clmcime_config/testmods_dirs/allactive/v1bgceca/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc/user_nl_clmcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_clmcime_config/testmods_dirs/allactive/v1cmip6/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_elmcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_elmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_elmcime_config/testmods_dirs/allactive/v1bgceca/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_clmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_clmcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_elm25fb8ee710e61f69ef0cb344a3864d0c777411291600111041000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename user_nl_clm in testdefs Rename all instances of user_nl_clm to user_nl_elm in all the testmods_dirs in cam, elm, allactive 2020-09-14 14:17:21 -050025fb8ee710e61f69ef0cb344a3864d0c77741129Rename user_nl_clm in testdefsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_elmaddcime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_elmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_elmaddcime_config/testmods_dirs/allactive/v1cmip6/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_clmdeletecime_config/testmods_dirs/allactive/v1bgc/user_nl_clmdeletecime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/vst/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC/user_nl_clmaddcime_config/testmods_dirs/allactive/v1bgc/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrig_o3_reduceOutput/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I20TRGSWCNPECACNTBC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/clmmos_usrdat/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_12/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/snowlayers_3_monthly/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly_noinitial/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_clmdeletecime_config/testmods_dirs/allactive/v1bgceca/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_sville/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/o3/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/cn_conly/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/NoVSNoNI/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/user_nl_elmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I1850GSWCNPRDCTCBC/user_nl_clmdeletecime_config/testmods_dirs/allactive/v1cmip6/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/allActive/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rootlit/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/af_bias_v5/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/rd/user_nl_elmaddcime_config/testmods_dirs/allactive/v1bgceca/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/crop_trans_f10/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/reduceOutput/user_nl_elmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/eca_f19_g16_I1850GSWCNPECACNTBC/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/monthly/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/fates/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/tropicAtl_subset/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/vrtlay/user_nl_elmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/oldhyd/user_nl_elmdeletecime_config/testmods_dirs/allactive/v1bgc_1850/user_nl_clmaddcomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmaddcime_config/testmods_dirs/allactive/v1bgceca_1850/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/glcMEC_long/user_nl_elmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/cropMonthOutput/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_clmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/SNICARFRC/user_nl_clmdeletecomponents/elm/cime_config/testdefs/testmods_dirs/elm/ciso/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/ctc_f19_g16_I20TRGSWCNPRDCTCBC/user_nl_elmdeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/user_nl_clmaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/fateshydro/user_nl_elmcime_config/config_archive.xml567b2a58ee84d2a7624738c7c7ab6b84e0b194ee1600113217000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename clm to elm in config_archive Rename clm to elm in config_archive.xml. This also requires updating the filenames output by elm to include "elm". 2020-09-14 14:53:37 -0500567b2a58ee84d2a7624738c7c7ab6b84e0b194eeRename clm to elm in config_archiveeditcime_config/config_archive.xmlcomponents/elm/src/main/restFileMod.F90components/elm/src/main/histFileMod.F90833a1d08ac6b8804355afdf02f39411eebe61e2f1600113399000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange ELM output to include "elm" string Change the history and restart files for ELM to include "elm" instead of "clm2" in their names. This is necessary for short-term archiving to work. 2020-09-14 14:56:39 -0500833a1d08ac6b8804355afdf02f39411eebe61e2fChange ELM output to include "elm" stringeditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/restFileMod.F90cime0730235f3639cdf779e642432c28718ec36f68431600133316000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime branch hash Update the hash on the cime branch needed for name change. 2020-09-14 20:28:36 -05000730235f3639cdf779e642432c28718ec36f6843Update cime branch hasheditcimecomponents/mpas-source63f23113a722ae975a03437d5689dae71ce70c5a1600188478000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Added GPU macros to seaice core 2020-09-15 11:47:58 -050063f23113a722ae975a03437d5689dae71ce70c5aUpdate mpas-source: Added GPU macros to seaice coreeditcomponents/mpas-sourceexternals/scorpioexternals/scorpio_classicde50be5154ea2e2b1192f8fdeb616f286fcd75e91600198968000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio ver 1.1.3 Updating Scorpio and Scorpio classic to version 1.1.3 . This version contains, * Fixes for issues writing text variables with the PGI compiler * Fixes for incompatibility between text variables written out using Scorpio and Scorpio classic * Support for the MPI serial library 2020-09-15 14:42:48 -0500de50be5154ea2e2b1192f8fdeb616f286fcd75e9Updating to Scorpio ver 1.1.3editexternals/scorpioeditexternals/scorpio_classiccomponents/homme/cmake/machineFiles/summit-modules/load-modules-gpucomponents/homme/cmake/machineFiles/summit-modules/load-modules-p9422e17dd915a03f197874da20275e1757c7978c41600200117000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comadding summit modules 2020-09-15 16:01:57 -0400422e17dd915a03f197874da20275e1757c7978c4adding summit modulesaddcomponents/homme/cmake/machineFiles/summit-modules/load-modules-p9addcomponents/homme/cmake/machineFiles/summit-modules/load-modules-gpucomponents/homme/cmake/HommeMacros.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/test/reg_test/run_tests/cmake_variables.shcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/testing-utils.shcomponents/homme/test/reg_test/run_tests/createRunScripts.shc0d6e4646f6c73a5fff6c92d976e8b190721d5441600203063000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.commods to cmake and bash scripts to have flexibility in run/test scripts for modules, omp options, jsrun command 2020-09-15 16:51:03 -0400c0d6e4646f6c73a5fff6c92d976e8b190721d544mods to cmake and bash scripts to have flexibility in run/test scripts for modules, omp options, jsrun commandeditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/test/reg_test/run_tests/createRunScripts.sheditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/test/reg_test/run_tests/cmake_variables.sheditcomponents/homme/test_execs/CMakeLists.txtcomponents/elm/src/main/restFileMod.F90components/elm/src/main/clm_varctl.F90components/elm/src/main/histFileMod.F9090d61ea78e344e45d25c45ddb91e097f160b0b941600224600000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate output file metdata with ELM Remove refs to CLM and CLM4.0 in history and restart global attributes and replace with ELM. 2020-09-15 19:50:00 -070090d61ea78e344e45d25c45ddb91e097f160b0b94Update output file metdata with ELMeditcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/clm_varctl.F90editcomponents/elm/src/main/histFileMod.F90REPLAY/README.txtc443d307c9b67592501135b1df0da356429bc93f1600277545000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdate README.txt 2020-09-16 12:32:25 -0500c443d307c9b67592501135b1df0da356429bc93fUpdate README.txteditREPLAY/README.txtrun_e3sm_scm_REPLAY.csh7de5ed78c54e0c8c77aa1442551e2d5bf120480c1600277575000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA replay SCM run script. 2020-09-16 12:32:55 -05007de5ed78c54e0c8c77aa1442551e2d5bf120480cA replay SCM run script.addrun_e3sm_scm_REPLAY.cshcomponents/cam/src/physics/cam/physics_types.F90run_silhs_anvil_gust.cshe53675a0e7c842505ab38bc2cfcd47e2b867569f1600277657000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduProfessor and I added lines of code in order to find out the negative spike of T. 2020-09-16 12:34:17 -0500e53675a0e7c842505ab38bc2cfcd47e2b867569fProfessor and I added lines of code in order to find out the negative spike of T.editcomponents/cam/src/physics/cam/physics_types.F90editrun_silhs_anvil_gust.cshrun_silhs_anvil_gust.csh2f64d6a2b815026867784b3c2b1160a0e5857e6e1600277786000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSubmit run should be kept as true. 2020-09-16 12:36:26 -05002f64d6a2b815026867784b3c2b1160a0e5857e6eSubmit run should be kept as true.editrun_silhs_anvil_gust.cshcomponents/cam/src/physics/crm/samxx/fortran/uvw.F90components/cam/src/physics/crm/samxx/fortran/openacc_utils.F90components/cam/src/physics/crm/samxx/fortran/crm_module.F90components/cam/src/physics/crm/samxx/fortran/bound_exchange.F90components/cam/src/physics/crm/samxx/fortran/advect_all_scalars.F90components/cam/src/physics/crm/samxx/fortran/crmtracers.F90components/cam/src/physics/crm/samxx/fortran/crm_input_module.F90components/cam/src/physics/crm/samxx/fortran/periodic.F90components/cam/src/physics/crm/samxx/fortran/random.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/microphysics.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_init.F90components/cam/src/physics/crm/samxx/fortran/buoyancy.F90components/cam/src/physics/crm/samxx/fortran/diagnose.F90components/cam/src/physics/crm/samxx/fortran/kurant.F90components/cam/src/physics/crm/samxx/fortran/crm_ecpp_output_module.F90components/cam/src/physics/crm/openacc_utils.F90components/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/samxx/fortran/domain.F90components/cam/src/physics/crm/sam/fftpack5.F90components/cam/src/physics/crm/samxx/fortran/advect2_mom_xy.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar3D.F90components/cam/src/physics/crm/samxx/fortran/module_ecpp_stats.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod2D.F90externals/YAKLcomponents/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/micro_params.F90components/cam/src/physics/crm/samxx/fortran/RNG_MT.F90components/cam/src/physics/crm/samxx/fortran/crm_rad_module.F90components/cam/src/physics/crm/samxx/test/fortran3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/cpp2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/ecppvars.F90components/cam/src/physics/crm/samxx/fortran/crmdims.F90components/cam/src/physics/crm/samxx/fortran/MICRO_SAM1MOM/precip_proc.F90components/cam/src/physics/crm/samxx/fortran/setparm.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/samxx/fortran/coriolis.F90components/cam/src/physics/crm/samxx/fortran/adams.F90components/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/fortran/zero.F90components/cam/src/physics/crm/samxx/fortran/fft.F90components/cam/src/physics/crm/samxx/test/fortran2d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/SGS_TKE/sgs.F90components/cam/src/physics/crm/samxx/fortran/advect_mom.F90components/cam/src/physics/crm/samxx/test/fortran_driver.F90components/cam/src/physics/crm/samxx/fortran/task_util_NOMPI.F90components/cam/src/physics/crm/samxx/fortran/crmsurface.F90components/cam/src/physics/crm/samxx/fortran/bound_duvdt.F90components/cam/src/physics/crm/samxx/fortran/press_grad.F90components/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar2D.F90components/cam/src/physics/crm/samxx/fortran/atmosphere.F90components/cam/src/physics/crm/samxx/fortran/boundaries.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/shear_prod3D.F90components/cam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/cam/src/physics/crm/samxx/fortran/pressure.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom3D.F90components/cam/src/physics/crm/samxx/fortran/gammafff.ccomponents/cam/src/physics/crm/samxx/fortran/grid.F90components/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advection.F90components/cam/src/physics/crm/samxx/fortran/forcing.F90components/cam/src/physics/crm/samxx/fortran/sat.F90components/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/fortran/ADV_MPDATA/advect_scalar.F90components/cam/src/physics/crm/samxx/fortran/vars.F90components/cam/src/physics/crm/RNG_MT.F90components/cam/src/physics/crm/samxx/fortran/utils.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar.F90components/cam/src/physics/crm/samxx/fortran/task_init.F90components/cam/src/physics/crm/samxx/fortran/setperturb.F90components/cam/src/physics/crm/samxx/fortran/params.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_scalar2D.F90components/cam/src/physics/crm/samxx/test/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90components/cam/src/physics/crm/samxx/fortran/press_rhs.F90components/cam/src/physics/crm/samxx/test/perf_mod.F90components/cam/src/physics/crm/samxx/fortran/crm_state_module.F90components/cam/src/physics/crm/samxx/fortran/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/module_ecpp_crm_driver.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom.F90components/cam/src/physics/crm/samxx/test/cpp3d/CMakeLists.txtcomponents/cam/src/physics/crm/samxx/fortran/damping.F90components/cam/src/physics/crm/sam/crm_module.F90components/cam/src/physics/crm/samxx/fortran/ice_fall.F90components/cam/src/physics/crm/samxx/fortran/crm_output_module.F90components/cam/src/physics/crm/samxx/fortran/SGS_TKE/diffuse_mom2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the standalone tests, and using sam/ fortran code rather than custom fortran code 2020-09-16 15:17:38 -040085bf722522eaed81c3397569d3601c0fd2361232Reviving the standalone tests, and using sam/ fortran code rather than custom fortran 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to YAKL SimpleBounds for lower register usage on the GPU. Bug fix for previous implementation of crm_clear_rh. 2020-09-16 15:17:38 -040004b1150e676b707c410d294ba4fab6706a4ac657Switching to YAKL SimpleBounds for lower register usage on the GPU. Bug fix for previous implementation of crm_clear_rh.editcomponents/cam/src/physics/crm/samxx/diagnose.cppeditcomponents/cam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/sgs.cppeditcomponents/cam/src/physics/crm/samxx/uvw.cppeditcomponents/cam/src/physics/crm/samxx/microphysics.cppeditcomponents/cam/src/physics/crm/samxx/timeloop.cppeditcomponents/cam/src/physics/crm/samxx/post_icycle.cppeditcomponents/cam/src/physics/crm/samxx/periodic.cppeditcomponents/cam/src/physics/crm/samxx/crmsurface.cppeditcomponents/cam/src/physics/crm/samxx/setperturb.cppeditexternals/YAKLeditcomponents/cam/src/physics/crm/samxx/pressure.cppeditcomponents/cam/src/physics/crm/samxx/coriolis.cppeditcomponents/cam/src/physics/crm/samxx/cloud.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar.cppeditcomponents/cam/src/physics/crm/samxx/tke_full.cppeditcomponents/cam/src/physics/crm/samxx/adams.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/vars.cppeditcomponents/cam/src/physics/crm/samxx/advect_scalar.cppeditcomponents/cam/src/physics/crm/samxx/accelerate_crm.cppeditcomponents/cam/src/physics/crm/samxx/bound_duvdt.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/cam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/cam/src/physics/crm/samxx/precip_init.cppeditcomponents/cam/src/physics/crm/samxx/zero.cppeditcomponents/cam/src/physics/crm/samxx/advect2_mom_xy.cppeditcomponents/cam/src/physics/crm/samxx/kurant.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_scalar3D.cppeditcomponents/cam/src/physics/crm/samxx/press_grad.cppeditcomponents/cam/src/physics/crm/samxx/samxx_const.heditcomponents/cam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod3D.cppeditcomponents/cam/src/physics/crm/samxx/buoyancy.cppeditcomponents/cam/src/physics/crm/samxx/forcing.cppeditcomponents/cam/src/physics/crm/samxx/ice_fall.cppeditcomponents/cam/src/physics/crm/samxx/diffuse_mom2D.cppeditcomponents/cam/src/physics/crm/samxx/precip_proc.cppeditcomponents/cam/src/physics/crm/samxx/bound_exchange.cppeditcomponents/cam/src/physics/crm/samxx/press_rhs.cppeditcomponents/cam/src/physics/crm/samxx/shear_prod2D.cppeditcomponents/cam/src/physics/crm/samxx/damping.cppcomponents/mpas-source2dd5d6a1f49edee129ad034acb5a60010fb8ae951600288394000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: improved sea ice testing 2020-09-16 15:33:14 -05002dd5d6a1f49edee129ad034acb5a60010fb8ae95Update mpas-source: improved sea ice testingeditcomponents/mpas-sourcecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commandscomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_camcime_config/tests.pya54c48835266878d002524135e6e3480d10bab231600289484000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comremove crm_gpu test mod modified: cime_config/tests.py deleted: components/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commands deleted: components/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_cam 2020-09-16 16:51:24 -0400a54c48835266878d002524135e6e3480d10bab23remove crm_gpu test moddeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/shell_commandseditcime_config/tests.pydeletecomponents/cam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_camcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F906de8dfc340ec1f02c8086e59e61af15bc807672c1600289646000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix saxx cpp_driver modified: components/cam/src/physics/crm/samxx/test/cpp_driver.F90 2020-09-16 16:54:06 -04006de8dfc340ec1f02c8086e59e61af15bc807672cFix saxx cpp_drivereditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90components/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/README.mdd7b251e8f024137a2ccddadb13b20fd7caef1fdd1600289747000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate standalone test notes and env modified: components/cam/src/physics/crm/samxx/README.md modified: components/cam/src/physics/crm/samxx/test/build/summit_gpu.sh 2020-09-16 16:55:47 -0400d7b251e8f024137a2ccddadb13b20fd7caef1fddUpdate standalone test notes and enveditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/README.mdcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppe3b5cc4bb351f51636f1ea2a963cb24a1f841ca71600366627000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: bug fix in preqx_kokkos, regarding un-initialized buffers When HOMMEXX_BFB_TESTING is on, buffers are inited to random values, which caused preqx_kokkos to get garbage if rsplit>0, due to eta_dot_dpdn not being computed, but still used to update dp3d. 2020-09-17 12:17:07 -0600e3b5cc4bb351f51636f1ea2a963cb24a1f841ca7Homme: bug fix in preqx_kokkos, regarding un-initialized bufferseditcomponents/homme/src/preqx_kokkos/cxx/CaarFunctorImpl.hppcomponents/cam/src/dynamics/se/dyn_grid.F90ce9e2764b3046fab06c695572a81099702ad79221600376663000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govChange area_p to area modified: components/cam/src/dynamics/se/dyn_grid.F90 2020-09-17 14:04:23 -0700ce9e2764b3046fab06c695572a81099702ad7922Change area_p to areaeditcomponents/cam/src/dynamics/se/dyn_grid.F90cimefde80e73561d3d241d15deecf2082868f055ca131600376815000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRebase cime changes Rebase cime changes on to 84df62862c26a9 which is what E3SM is currently using on master. 2020-09-17 16:06:55 -0500fde80e73561d3d241d15deecf2082868f055ca13Rebase cime changeseditcimecime_config/machines/Depends.ibmgpu.cmakecime_config/machines/Depends.pgigpu.cmakecime_config/machines/Depends.pgigpu3344db21fcc39ac06fe6de182a5111b3e172e5541600453744000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd MPAS-Seaice files for OpenMP or OpenACC offload 2020-09-18 13:29:04 -05003344db21fcc39ac06fe6de182a5111b3e172e554Add MPAS-Seaice files for OpenMP or OpenACC offloadeditcime_config/machines/Depends.pgigpu.cmakeeditcime_config/machines/Depends.ibmgpu.cmakeeditcime_config/machines/Depends.pgigpucime_config/machines/Depends.pgigpu.cmaked0a805ced5ca7c3c1fbae5f501ffefabe25462e11600453744000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate paths for moved files 2020-09-18 13:29:04 -0500d0a805ced5ca7c3c1fbae5f501ffefabe25462e1Update paths for moved fileseditcime_config/machines/Depends.pgigpu.cmakecime_config/machines/config_machines.xml2f4d3ecc25285056238e99585ad508744dd61ea31600453871000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd netcdf to Tulip's LD_LIBRARY_PATH 2020-09-18 13:31:11 -05002f4d3ecc25285056238e99585ad508744dd61ea3Add netcdf to Tulip's LD_LIBRARY_PATHeditcime_config/machines/config_machines.xmlcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/test/reg_test/run_tests/testing-utils.shd3483227ee015d7d9a13fe6e076f67a998f70ca11600455518000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comincremental: fixed flags for kokkos target; changes to have only kokkos targets on summit 2020-09-18 14:58:38 -0400d3483227ee015d7d9a13fe6e076f67a998f70ca1incremental: fixed flags for kokkos target; changes to have only kokkos targets on summiteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/CMakeLists.txteditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/elm/cime_config/buildnmlc88c39a37dab701505158dc0fd9f2cb26c3867ab1600456842000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRemove debugging lines in elm buildnml Remove debugging lines in elm buildnml that were accidentally committed. 2020-09-18 14:20:42 -0500c88c39a37dab701505158dc0fd9f2cb26c3867abRemove debugging lines in elm buildnmleditcomponents/elm/cime_config/buildnmlcime_config/allactive/config_pesall.xml12f1bc52f673093cfc635eeb5d4c364e9b5ef88b1600487285000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace CLM with ELM in a few pelayout entires Replace CLM with ELM in a few pelayout entires that were missed in the initial switch. Spotted by Xue Zheng. 2020-09-18 20:48:05 -070012f1bc52f673093cfc635eeb5d4c364e9b5ef88bReplace CLM with ELM in a few pelayout entireseditcime_config/allactive/config_pesall.xmlcomponents/homme/src/share/sl_advection.F90d43c4232485527ad47b046279b32d5050e7b6c2a1600636049000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Remove some debug-build output. 2020-09-20 14:07:29 -0700d43c4232485527ad47b046279b32d5050e7b6c2aHomme: Remove some debug-build output.editcomponents/homme/src/share/sl_advection.F90components/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/test/reg_test/run_tests/testing-utils.shcomponents/homme/test/reg_test/run_tests/test-list.cmake0769952102d5fd0c601a1d875418139721a376431600639844000http://carson.math.uwm.edu/jenkins/user/oksanagubaoksanagubaoksanaguba@gmail.comfinish summit scripts 2020-09-20 18:10:44 -04000769952102d5fd0c601a1d875418139721a37643finish summit scriptseditcomponents/homme/test/reg_test/run_tests/testing-utils.sheditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/test/reg_test/run_tests/test-list.cmakecomponents/cam/src/dynamics/se/restart_dynamics.F90357633eef1c99cb30de7553e25a95129f88beb651600641815000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Remove dynamics' Q fields from SE dycore restart, leaving only Qdp. The SE dycore already was ignoring the Q values, instead recomputing Q in prim_init2. This saves the time in writing and reading pcnsnt 3D fields. 2020-09-20 15:43:35 -0700357633eef1c99cb30de7553e25a95129f88beb65EAM: Remove dynamics' Q fields from SE dycore restart, leaving only Qdp.editcomponents/cam/src/dynamics/se/restart_dynamics.F90components/homme/cmake/machineFiles/anvil-bfb.cmake00df527d05c06ea26b924ebb6124d4d9d1147ec01600644815000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchange options for anvil bfb 2020-09-20 18:33:35 -050000df527d05c06ea26b924ebb6124d4d9d1147ec0change options for anvil bfbeditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmld4f5ad8e2892100e22d6cfd412cf35a6f8edf66f1600658925000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.govaddition of snicar for land and sea ice, 5 sea ice snow layers, and ITD snow redistribution 2020-09-20 20:28:45 -0700d4f5ad8e2892100e22d6cfd412cf35a6f8edf66faddition of snicar for land and sea ice, 5 sea ice snow layers, and ITD snow redistributioneditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/cam/src/physics/crm/samxx/README.mdcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shbc9ecec54b8f36b192bbeae0c79df5794e99bc7f1600710083000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.commodify standalone conda commands modified: components/cam/src/physics/crm/samxx/README.md modified: components/cam/src/physics/crm/samxx/test/build/summit_cpu.sh modified: components/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sh modified: components/cam/src/physics/crm/samxx/test/build/summit_gpu.sh 2020-09-21 13:41:23 -0400bc9ecec54b8f36b192bbeae0c79df5794e99bc7fmodify standalone conda commandseditcomponents/cam/src/physics/crm/samxx/README.mdeditcomponents/cam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.shcomponents/cam/src/physics/crm/params_kind.F90components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/sam/crm_module.F908fe58a140d0541eab97b86865044950f754586e71600723128000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCentralized definition of r8 for CRM code modified: components/cam/src/physics/crm/params_kind.F90 modified: components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90 modified: components/cam/src/physics/crm/sam/accelerate_crm.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 2020-09-21 17:18:48 -04008fe58a140d0541eab97b86865044950f754586e7Centralized definition of r8 for CRM codeeditcomponents/cam/src/physics/crm/params_kind.F90editcomponents/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90editcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/openacc_utils.F906655852d82f0e72b9790f4fc5c0e4538921e13b31600724557000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments about private/public modified: components/cam/src/physics/crm/openacc_utils.F90 2020-09-21 17:42:37 -04006655852d82f0e72b9790f4fc5c0e4538921e13b3Address PR comments about private/publiceditcomponents/cam/src/physics/crm/openacc_utils.F90cime_config/allactive/config_pesall.xml3710392d0de834064efedf3eba4ecd04401bd07b1600728048000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate compy L pe-layout for trigrid with EC30to60 2020-09-21 17:40:48 -05003710392d0de834064efedf3eba4ecd04401bd07bUpdate compy L pe-layout for trigrid with 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cam to eam Rename the cam directory to eam. 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submodule location for cosp2 and rrtmgp externals Change submodule location for cosp2 and rrtmgp externals and set hashes to same version as master. 2020-09-21 21:36:29 -0500eb0092f252ea4e91916566a7a6e57ffa34078ca6Change submodule location for cosp2 and rrtmgp 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ts/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/shell_commands8536a3269cd5cda1e0e7833445377615c964e7861600742900000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename cam testmods to eam Rename cam/cime_config/testdefs/testmods_dirs/cam to eam/cime_config/testdefs/testmods_dirs/eam Also rename user_nl_cam to user_nl_eam 2020-09-21 21:48:20 -05008536a3269cd5cda1e0e7833445377615c964e786Rename cam testmods to 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_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam4_port/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosplite_nhtfrq5/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cam5_port/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq9s/user_nl_elmdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl_pg2_mass/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/chem_pp/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/crmout/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype1/user_nl_camdeletecomponents/eam/cime_config/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/rtm_null/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosp/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype4/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosplite_nhtfrq5/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetanh_ftype1/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype0/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq9s_sat_hist/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_ftype2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/bench/noio/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl_pg2/shell_commandsaddcomponents/eam/cime_config/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/preqx_ftype0/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq3d_sc/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/cosplite/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/oldoptics/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/rrtmgp_oldcldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_pg2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_elmdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl_pg2_mass/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/crm_gpu/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/hommexx/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/outfrq1d/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/cam/thetahy_sl/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_camcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_cam96bddddeb61328565be1067446eed5f609fa8f3c1600744266000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename user_nl_cams in testmods Rename all the user_nl_cam files in the eam testmods to user_nl_eam 2020-09-21 22:11:06 -050096bddddeb61328565be1067446eed5f609fa8f3cRename user_nl_cams in testmodsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype0/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype1/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_pg2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype4/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crm_gpu/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype2/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/clubb_only/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetanh_ftype1/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/user_nl_eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite_nhtfrq5/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cosplite/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/oldoptics/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_sl_pg2_mass/user_nl_camdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/rrtmgp_oldcldoptics/user_nl_camaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/preqx_ftype0/user_nl_eamdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam5_port/user_nl_camcomponents/cam/src/physics/crm/crm_rad_module.F90components/cam/src/physics/crm/RNG_MT.F90components/cam/src/physics/crm/sam/accelerate_crm.F90components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/sam/crm_module.F90122993dcb55e278dfba4cd9a0cff6553a1265f381600785569000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments modified: components/cam/src/physics/crm/RNG_MT.F90 modified: components/cam/src/physics/crm/crm_rad_module.F90 modified: components/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90 modified: components/cam/src/physics/crm/sam/accelerate_crm.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 2020-09-22 10:39:29 -0400122993dcb55e278dfba4cd9a0cff6553a1265f38Address PR commentseditcomponents/cam/src/physics/crm/RNG_MT.F90editcomponents/cam/src/physics/crm/crm_rad_module.F90editcomponents/cam/src/physics/crm/sam/crm_module.F90editcomponents/cam/src/physics/crm/sam/accelerate_crm.F90editcomponents/cam/src/physics/crm/sam/MICRO_M2005/drop_activation.F90components/cam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90externals/scorpio_classiccomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90externals/scorpiocomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/mpas-sourcecomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.shcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sh2334bbc1ca97b9ac1a733b94ba6859c5413791f61600790265000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govUpdating standalone framework 2020-09-22 11:57:45 -04002334bbc1ca97b9ac1a733b94ba6859c5413791f6Updating standalone frameworkeditcomponents/cam/src/physics/crm/samxx/test/cpp_driver.F90deletecomponents/cam/src/physics/crm/samxx/test/build/summit_cpu.sheditexternals/scorpioeditexternals/scorpio_classiceditcomponents/cam/src/physics/crm/samxx/test/fortran_driver.F90editcomponents/cam/src/physics/crm/samxx/test/build/cmakescript.shaddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.sheditcomponents/mpas-sourceeditcomponents/cam/src/physics/crm/samxx/test/build/timing_summit_gpu.sheditcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_ibm.shaddcomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/mpas-sourceaebf18d2378e96e076e4de106b1d82dd5eabe84b1600793535000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fix OMP Directives and Loop Bounds in Ocean 2020-09-22 09:52:15 -0700aebf18d2378e96e076e4de106b1d82dd5eabe84bupdate mpas-source: Fix OMP Directives and Loop Bounds in Oceaneditcomponents/mpas-sourcecomponents/cam/src/physics/crm/params_kind.F90e71df1e6cad8f5cd608ee60c04ab4f9f2044d7ea1600795388000http://carson.math.uwm.edu/jenkins/user/normanmrnormanmrnormanmr@ornl.govFixing a standalone bug with params_kind.F90 2020-09-22 13:23:08 -0400e71df1e6cad8f5cd608ee60c04ab4f9f2044d7eaFixing a standalone bug with params_kind.F90editcomponents/cam/src/physics/crm/params_kind.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/clubb/setup_clubb_pdf_params.F9084befb8fe31b3912a873a6b6e1877712a9ff76d31600801138000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed setup_clubb_pdf_params.F90 and latin_hypercube_driver_module.F90 so that the stats code loops over stat_update_var_pt instead of making a call to stat_update_var. This is done because SILHS to has a different number of vertical levels than CLUBB in E3SM-CLUBB-SILHS. 2020-09-22 13:58:58 -050084befb8fe31b3912a873a6b6e1877712a9ff76d3I changed setup_clubb_pdf_params.F90 and latin_hypercube_driver_module.F90editcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/cam/src/physics/clubb/setup_clubb_pdf_params.F90cimecomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcime_config/tests.pycomponents/eam/cime_config/buildnmlcomponents/eam/cime_config/config_pes.xmlcomponents/eam/bld/configurecomponents/eam/cime_config/buildlibcomponents/eam/bld/build-namelistbae3d49c850db1b21ff96320e0836da9813627191600802220000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRename cam to eam in CIME Do all renaming in CIME pieces necessary to change cam to eam Update config_files, commit to a branch and update cime submodule. Rename CAM and CAM5 to EAM in all F compsets This and below lets e3sm_atm_developer tests pass the setup phase with the new name. Rename all compsets in eam/cime_config/config_compsets.xml and references to them in config_components.xml, also config_pes.xml (which isn't used). Edit eam buildnml, buildlib, configure and build-namelist to use "eam" in some variable names including eamconf_dir, eam.input_data_list. Change "ERROR cam.buildexe" to "ERROR eam buildlib" Change "CAM" to "EAM" in some comments and error messages. Also remove all the CAM4 compsets. 2020-09-22 14:17:00 -0500bae3d49c850db1b21ff96320e0836da981362719Rename cam to eam in CIMEeditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/cime_config/buildlibeditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/cime_config/buildnmleditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_pes.xmleditcimeeditcime_config/tests.pyeditcomponents/eam/bld/configurecime_config/allactive/config_compsets.xml8a4b3954f0d9d6f99f6c8b859de41f2c960d70ab1600802756000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange CAM to EAM in allactive compsets Change CAM to EAM in allactive compsets 2020-09-22 14:25:56 -05008a4b3954f0d9d6f99f6c8b859de41f2c960d70abChange CAM to EAM in allactive compsetseditcime_config/allactive/config_compsets.xmlcime_config/allactive/config_pesall.xmlcime_config/config_grids.xmlcime_config/config_archive.xml22b40416172a664f838ca903e965ab5a2ae957751600804640000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govModify more cime_config files for eam Modify archive, grids and pesall to use EAM,eam instead of CAM,cam 2020-09-22 14:57:20 -050022b40416172a664f838ca903e965ab5a2ae95775Modify more cime_config files for eameditcime_config/config_archive.xmleditcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmlcomponents/elm/cime_config/config_component.xmlcomponents/mosart/cime_config/config_component.xmlcomponents/cice/cime_config/config_component.xmlcomponents/mpas-ocean/cime_config/config_component.xml59709068eaf34dedcaf3ab645d9c037fab354a841600805322000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdjust other component config files for EAM Edit config_component.xml in cice, elm, mosart and mpas-ocean to switch from CAM to EAM 2020-09-22 15:08:42 -050059709068eaf34dedcaf3ab645d9c037fab354a84Adjust other component config files for EAMeditcomponents/mosart/cime_config/config_component.xmleditcomponents/cice/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmleditcomponents/mpas-ocean/cime_config/config_component.xmlcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/chem_pp/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam4_port/user_nl_cambb6d2ee5656e308bb5e06ffdb17a0119f2d136db1600809349000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govModify a few more testmods Modify some shell commands that were making copies of user_nl_cam (and clm) files to instead do user_nl_eam (and elm) 2020-09-22 16:15:49 -0500bb6d2ee5656e308bb5e06ffdb17a0119f2d136dbModify a few more testmodseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq3d_sc/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/chem_pp/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq1d/shell_commandseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/outfrq9s_sat_hist/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/default/shell_commandsdeletecomponents/eam/cime_config/testdefs/testmods_dirs/eam/cam4_port/user_nl_camcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pma8db6db2cd5026b7aa90326cb515ee790a1ad6331600828228000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename cam to eam in ChemPreprocess.pm for paths to chem_proc and chemistry 2020-09-22 19:30:28 -0700a8db6db2cd5026b7aa90326cb515ee790a1ad633Rename cam to eam in ChemPreprocess.pm for paths to chem_proc and chemistryeditcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmcime_config/machines/Depends.ibm.cmakecime_config/machines/Depends.intel.cmake31e975ca40777bf748ae4f9f32714a42f41075921600830706000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename cam to eam in machine Depends files for cmake 2020-09-22 20:11:46 -070031e975ca40777bf748ae4f9f32714a42f4107592Rename cam to eam in machine Depends files for cmakeeditcime_config/machines/Depends.intel.cmakeeditcime_config/machines/Depends.ibm.cmakecomponents/mpas-sourcebabe50dda6d6a3cade7baa117b934516c87f49db1600887886000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: vertical transport in stage 1 2020-09-23 12:04:46 -0700babe50dda6d6a3cade7baa117b934516c87f49dbupdate mpas-source: vertical transport in stage 1editcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml055ac7bee9e72664abd737c188570fb57c1cd9931600901512000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdditions to Monthly output 2020-09-23 15:51:52 -0700055ac7bee9e72664abd737c188570fb57c1cd993Additions to Monthly outputeditcomponents/mpas-ocean/cime_config/buildnmlexternals/scorpioexternals/scorpio_classic52f96cc9e4efcb630689b703aea468ff993656ca1600906014000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govFix scorpio submodules after bad merge Fix SHA1s for scorpio submodules after a bad merge to next and master from PR #3832. This PR inadvertently changed these submodules to point to older versions, so we reset the SHA1s to the correct versions here. 2020-09-23 20:06:54 -040052f96cc9e4efcb630689b703aea468ff993656caFix scorpio submodules after bad mergeeditexternals/scorpio_classiceditexternals/scorpiocimeff4db3d7c82fa8fa1bdb8834e863ac65f40b5acf1600979227000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime pointer Update pointer to cime branch for cam2eam 2020-09-24 15:27:07 -0500ff4db3d7c82fa8fa1bdb8834e863ac65f40b5acfUpdate cime pointereditcimecomponents/homme/cmake/machineFiles/anvil-bfb.cmake7358405b141856314d40ad948943dec197ac267a1600986532000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comrevert some changes 2020-09-24 17:28:52 -05007358405b141856314d40ad948943dec197ac267arevert some changeseditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/cmake/build_model.cmakecomponents/eam/src/physics/cosp2/Cosp.cmake3abcc4a31799d6734bb34936d487943c5bc865851601004721000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govReplace cam with eam in cmake files Replace cam with eam in some cmake files. Also an instance of clm with elm 2020-09-24 20:32:01 -07003abcc4a31799d6734bb34936d487943c5bc86585Replace cam with eam in cmake fileseditcomponents/eam/src/physics/cosp2/Cosp.cmakeeditcomponents/cmake/build_model.cmakecomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90components/clm/src/biogeochem/AllocationMod.F90393a62fd93884795238182d7533732e38a95d85c1601048172000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govUpdated fates interface bc structure for CNP 2020-09-25 11:36:12 -0400393a62fd93884795238182d7533732e38a95d85cUpdated fates interface bc structure for CNPeditcomponents/clm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/clm/src/biogeochem/AllocationMod.F90components/cam/src/physics/cam/micro_mg2_0.F90e274734b72dfb3d9a2006e64dc11777efbead1411601049108000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some documentation (comments/clean-up) and thresholding on dumr, dumnr, dums, and dumns. 2020-09-25 10:51:48 -0500e274734b72dfb3d9a2006e64dc11777efbead141I added some documentation (comments/clean-up) and thresholding on dumr, dumnr, dums, and dumns.editcomponents/cam/src/physics/cam/micro_mg2_0.F90components/mpas-ocean/cime_config/buildnml990ee01ea1bb84c29db3f8a8aaab1e522f5629681601053854000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd gmKappaScaling and gmBolusKappa 2020-09-25 12:10:54 -0500990ee01ea1bb84c29db3f8a8aaab1e522f562968Add gmKappaScaling and gmBolusKappaeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmlcomponents/mosart/src/cpl/rof_comp_esmf.F90components/mosart/src/riverroute/RtmVar.F90components/mosart/src/cpl/rof_cpl_indices.F90components/elm/src/main/lnd2atmType.F90components/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90components/mosart/src/riverroute/MOSART_stra_mod.F90components/mosart/src/wrm/WRM_type_mod.F90components/mosart/src/riverroute/MOSART_physics_mod.F90components/elm/src/cpl/clm_cpl_indices.F90components/mosart/bld/build-namelistcomponents/elm/src/cpl/lnd_import_export.F90components/mosart/src/riverroute/RtmHistFlds.F90components/mosart/src/cpl/rof_comp_mct.F90components/mosart/src/riverroute/RtmMod.F90components/mosart/src/riverroute/RunoffMod.F90components/elm/src/main/lnd2atmMod.F90ba5f2f5fa27d6371b684a4b55e515d50d2bdc3fb1601054853000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds reservoir stratification to MOSART-heat. The new module is able to better simulate the effect of reservoirs on stream temperature seasonality and amplitude. - The stratification flag (rstraflag) should be set to "true" in "user_nl_mosart" for the scheme to be active - Inflow/outflow are considered for the advection process - A new reservoir dataset (geometry, number of layers, and outlet location) is also prepared. - These reservoir parameters can be modified by users(for example, reservoir outflow location). If required and/or additional reservoir data observation is available. - User can also specify initial reservoir temperature(inittemp), vertical discretization points for reservoir geometry (ngeom), and the maximum number of layers allowed (layers) [BFB] 2020-09-25 10:27:33 -0700ba5f2f5fa27d6371b684a4b55e515d50d2bdc3fbAdds reservoir stratification to MOSART-heat.editcomponents/mosart/bld/namelist_files/namelist_definition_mosart.xmleditcomponents/mosart/src/riverroute/MOSART_physics_mod.F90editcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmleditcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/cpl/clm_cpl_indices.F90editcomponents/mosart/src/riverroute/RunoffMod.F90editcomponents/mosart/src/cpl/rof_comp_mct.F90addcomponents/mosart/src/riverroute/MOSART_stra_mod.F90editcomponents/mosart/src/wrm/WRM_type_mod.F90editcomponents/mosart/bld/build-namelisteditcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/wrm/WRM_subw_IO_mod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/mosart/src/cpl/rof_cpl_indices.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/mosart/src/cpl/rof_comp_esmf.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmld28ea6ca2d96018334ee9638f62a051424338db41601064504000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduSwitch to deafault E3SM V2 output 2020-09-25 14:08:24 -0600d28ea6ca2d96018334ee9638f62a051424338db4Switch to deafault E3SM V2 outputeditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/cmake/build_model.cmakecime_config/machines/Depends.nag.cmakecime_config/machines/Depends.summit.cmakecime_config/machines/Depends.gnu.cmakecime_config/machines/Depends.pgigpu.cmakecime_config/machines/Depends.compy.pgi.cmakecime_config/machines/config_compilers.xml08e19d9f4ed674a4d02227e04fb098f7ee333a0f1601065252000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate Depends files to new eam name 2020-09-25 16:20:52 -040008e19d9f4ed674a4d02227e04fb098f7ee333a0fUpdate Depends files to new eam nameeditcomponents/cmake/build_model.cmakeeditcime_config/machines/Depends.nag.cmakeeditcime_config/machines/Depends.summit.cmakeeditcime_config/machines/Depends.gnu.cmakeeditcime_config/machines/config_compilers.xmleditcime_config/machines/Depends.compy.pgi.cmakeeditcime_config/machines/Depends.pgigpu.cmakecomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-albany-landice/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnml3ae0ce4464fb172c37b854acdb9f1715501d24f91601075566000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govInitial commit to prepend casename to mpas output files 2020-09-25 18:12:46 -05003ae0ce4464fb172c37b854acdb9f1715501d24f9Initial commit to prepend casename to mpas output fileseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-albany-landice/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/clm/src/biogeophys/SedYieldMod.F9007cf25e01dae8ce64c94091399837004118952541601097690000http://carson.math.uwm.edu/jenkins/user/zeli.tanzeli.tanzeli.tan@pnnl.govfix a bug in ELM-Erosion 2020-09-25 22:21:30 -070007cf25e01dae8ce64c9409139983700411895254fix a bug in ELM-Erosioneditcomponents/clm/src/biogeophys/SedYieldMod.F90components/eam/src/cpl/atm_comp_mct.F90components/eam/src/control/cam_history.F90components/eam/src/control/cam_restart.F905b3c359db87fa66fd21667aeca807ed1f3c315d51601099523000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange eam output files to use eam in name Change eam history and restart files to use "eam" instead of "cam" in their names. Also update history file global attributes to use EAM instead of CAM. 2020-09-25 22:52:03 -07005b3c359db87fa66fd21667aeca807ed1f3c315d5Change eam output files to use eam in nameeditcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/control/cam_restart.F90editcomponents/eam/src/cpl/atm_comp_mct.F90cime6abebac06f696c44efecf5c6d6803eeac4cdf1a91601099885000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate cime submodule Update cime submodule on the eam rename branch 2020-09-25 22:58:05 -07006abebac06f696c44efecf5c6d6803eeac4cdf1a9Update cime submoduleeditcimecomponents/mosart/src/riverroute/MOSART_stra_mod.F90d11837009dd057424ee19f5f8d7672c67f8c9fc71601136943000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUses isnan from shr_infnan_mod 2020-09-26 09:15:43 -0700d11837009dd057424ee19f5f8d7672c67f8c9fc7Uses isnan from shr_infnan_modeditcomponents/mosart/src/riverroute/MOSART_stra_mod.F90cime_config/tests.py26745afc61667feb4eb0416eded1bdfa359a1aab1601165691000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.cominctease time limit for homme suite for anvil 2020-09-26 19:14:51 -050026745afc61667feb4eb0416eded1bdfa359a1aabinctease time limit for homme suite for anvileditcime_config/tests.py.travis/run.sh6314340040c5af416ae5d7ee2f0c84b23ff347081601222800000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduImprove Travis debugging 2020-09-27 11:06:40 -05006314340040c5af416ae5d7ee2f0c84b23ff34708Improve Travis debuggingedit.travis/run.shcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnml1d6f9a7a80e1caa3a223d49ae048eeb850fa411d1601232448000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate ICG files for oEC60to30v3 so seaice has new number of snow levels 2020-09-27 13:47:28 -05001d6f9a7a80e1caa3a223d49ae048eeb850fa411dUpdate ICG files for oEC60to30v3 so seaice has new number of snow levelseditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmlcomponents/eam/chem_proc/procfiles/cam/mo_chem.incomponents/eam/chem_proc/bkend/mozart.mod.files.PPcomponents/eam/chem_proc/procfiles/mo_grid.incomponents/eam/chem_proc/bkend/cam.mod.files.PPcomponents/eam/chem_proc/procfiles/mo_chem.incomponents/eam/chem_proc/bkend/wrf.mod.files.PP2830fd4d62fe48388d9d6576bb6257e2b1b6a6a81601270303000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin3.lcrc.anl.govRename .mod files in chem_proc to .in 2020-09-28 00:18:23 -05002830fd4d62fe48388d9d6576bb6257e2b1b6a6a8Rename .mod files in chem_proc to .inaddcomponents/eam/chem_proc/procfiles/mo_grid.ineditcomponents/eam/chem_proc/bkend/cam.mod.files.PPaddcomponents/eam/chem_proc/procfiles/mo_chem.inaddcomponents/eam/chem_proc/procfiles/cam/mo_chem.ineditcomponents/eam/chem_proc/bkend/wrf.mod.files.PPeditcomponents/eam/chem_proc/bkend/mozart.mod.files.PPcomponents/mpas-seaice/cime_config/buildnml1c5b45030b7e17635fd6bfb51c93aa0e8894c70f1601271706000http://carson.math.uwm.edu/jenkins/user/ac.afrobertsac.afrobertsac.afroberts@blueslogin4.lcrc.anl.govupdate buildnml for E3SM V2 2020-09-28 00:41:46 -05001c5b45030b7e17635fd6bfb51c93aa0e8894c70fupdate buildnml for E3SM V2editcomponents/mpas-seaice/cime_config/buildnmlcomponents/eam/chem_proc/src/cam_chempp/mozpp.main.f6f54a273f284afc6d9cb95fd2366133fb283ddae1601290360000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govChange pattern matching of .mod to .in on setting chem_mods file 2020-09-28 05:52:40 -05006f54a273f284afc6d9cb95fd2366133fb283ddaeChange pattern matching of .mod to .in on setting chem_mods fileeditcomponents/eam/chem_proc/src/cam_chempp/mozpp.main.fcomponents/mpas-source195ecf14d2cd71332574b72f8660e5557f7e96a51601323000000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: CVMix and GM updates 2020-09-28 13:56:40 -0600195ecf14d2cd71332574b72f8660e5557f7e96a5Update mpas-source: CVMix and GM updateseditcomponents/mpas-sourcecomponents/cam/bld/namelist_files/namelist_definition.xmlc86fe11e5c40641c389e41c46de50d16493fe58e1601323689000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govAllow up to 10 atm tapes 2020-09-28 13:08:09 -0700c86fe11e5c40641c389e41c46de50d16493fe58eAllow up to 10 atm tapeseditcomponents/cam/bld/namelist_files/namelist_definition.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist69e428eca1db099d71c261f93b33dd146826dc121601325138000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate bld scripts autogenerated from Registry changes 2020-09-28 15:32:18 -050069e428eca1db099d71c261f93b33dd146826dc12Update bld scripts autogenerated from Registry changeseditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-seaice/cime_config/buildnmle05f005296cd5aeba46506164f3497edc93d44a01601354155000http://carson.math.uwm.edu/jenkins/user/ac.afrobertsac.afrobertsac.afroberts@blueslogin1.lcrc.anl.govupdate to include monthly albedo by surface type, and pond fraction as default 2020-09-28 23:35:55 -0500e05f005296cd5aeba46506164f3497edc93d44a0update to include monthly albedo by surface type, and pond fraction as defaulteditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-source50f5d2fafa50ef76cf8af46251c03276375c047f1601390258000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: CVMix and GM updates 2020-09-29 08:37:38 -060050f5d2fafa50ef76cf8af46251c03276375c047fUpdate mpas-source: CVMix and GM updateseditcomponents/mpas-sourcecomponents/clm/src/main/clmfates_interfaceMod.F908f32d882576893d161e0f19b605d9a810e24e2e81601394967000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govSending ALM as hlm_name to FATES instead of CLM 2020-09-29 11:56:07 -04008f32d882576893d161e0f19b605d9a810e24e2e8Sending ALM as hlm_name to FATES instead of CLMeditcomponents/clm/src/main/clmfates_interfaceMod.F90components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml969ccb500d501b94adecfa2b839c2d4eb625cb561601403382000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govChange default for config_GM_Visbeck_alpha in coupled model 2020-09-29 13:16:22 -0500969ccb500d501b94adecfa2b839c2d4eb625cb56Change default for config_GM_Visbeck_alpha in coupled modeleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/cime_config/config_component.xml7338829c38e0ca4a0d64c53eee5bf6bd2ee901941601403948000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govChange name of CAM_USER_MODS Change name of CAM_USER_MODS to EAM_USER_MODS because cime uses the component name to construct that string in case.py 2020-09-29 11:25:48 -07007338829c38e0ca4a0d64c53eee5bf6bd2ee90194Change name of CAM_USER_MODSeditcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90b47d5411afe7056bd14e4dac26b9932c0afd30601601409374000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd MMF_WTKE output variable modified: components/cam/src/physics/crm/crm_history.F90 modified: components/cam/src/physics/crm/crm_output_module.F90 modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:14 -0400b47d5411afe7056bd14e4dac26b9932c0afd3060Add MMF_WTKE output variableeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90d398206337ffac71778aae3b393a6188b423d2061601409376000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comchange MMF_WTKE to MMF_TKEW modified: components/cam/src/physics/crm/crm_history.F90 modified: components/cam/src/physics/crm/crm_output_module.F90 modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:16 -0400d398206337ffac71778aae3b393a6188b423d206change MMF_WTKE to MMF_TKEWeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F9034e51e604e0730cbe061d9344f5fbde8b23bdc211601409377000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comEnable moentum feedback in SAM++ modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/cam/src/physics/crm/samxx/crm.cpp modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/vars.cpp modified: components/cam/src/physics/crm/samxx/vars.h 2020-09-29 15:56:17 -040034e51e604e0730cbe061d9344f5fbde8b23bdc21Enable moentum feedback in SAM++editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/setparm.cppfffd888d62f77fffa5ffbfa580af7fd16215a2be1601409379000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix MMF momentum feedback modified: components/cam/src/physics/crm/crm_physics.F90 modified: components/cam/src/physics/crm/sam/crm_module.F90 modified: components/cam/src/physics/crm/samxx/post_timeloop.cpp modified: components/cam/src/physics/crm/samxx/setparm.cpp 2020-09-29 15:56:19 -0400fffd888d62f77fffa5ffbfa580af7fd16215a2beFix MMF momentum feedbackeditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/setparm.cppcomponents/eam/src/physics/crm/sam/params.F90406ae76ff993385b67ad411817fd5c84df8d6ea41601413813000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comApply dosurface change to fortran CRM modified: components/eam/src/physics/crm/sam/params.F90 2020-09-29 17:10:13 -0400406ae76ff993385b67ad411817fd5c84df8d6ea4Apply dosurface change to fortran CRMeditcomponents/eam/src/physics/crm/sam/params.F90components/eam/src/cpl/atm_comp_mct.F90components/eam/src/control/cam_history.F90components/eam/src/control/filenames.F9016640b2ca15fbbb3fbc80925f58d6608b591729b1601443587000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate eam global attributes Rearrange global attriutes and include hostname and git version. Get those and username from cime infodata buffer. Remove old host and logname retrieval 2020-09-29 22:26:27 -070016640b2ca15fbbb3fbc80925f58d6608b591729bUpdate eam global attributeseditcomponents/eam/src/cpl/atm_comp_mct.F90editcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/control/filenames.F90components/elm/src/main/histFileMod.F90de55f0520034852c53e561c8c38fd04ae92c6d1e1601445071000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate elm global attributes Update elm global attributes to add contact, standardize names and order. 2020-09-29 22:51:11 -0700de55f0520034852c53e561c8c38fd04ae92c6d1eUpdate elm global attributeseditcomponents/elm/src/main/histFileMod.F90components/eam/src/cpl/atm_comp_mct.F90c73f78ffbed1dc4f92429dbec4a38c848c435b921601481154000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comDeallocate local vector that is not deallocated automatically A vector is allocated inside of a call to the routine mct_gsMap_orderedPoints and pointed to by a local pointer variable in the routine atm_domain_mct. This allocated storage is not automatically deallocated when returning from atm_domain_mct. This is corrected here with an explicit deallocate. [BFB] 2020-09-30 08:52:34 -0700c73f78ffbed1dc4f92429dbec4a38c848c435b92Deallocate local vector that is not deallocated automaticallyeditcomponents/eam/src/cpl/atm_comp_mct.F90postprocessing/big_number_finder.py124f85b129a4ad07c299eec5ce4d5d892bc288df1601483735000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding big_number_finder.py to the postprocessing directory. 2020-09-30 11:35:35 -0500124f85b129a4ad07c299eec5ce4d5d892bc288dfAdding big_number_finder.py to the postprocessing directory.addpostprocessing/big_number_finder.pycomponents/mpas-sourcee0833a56f78ef26d55eba3534d1b1b537f59ed921601487573000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Modify ocean freezing temperature to match MPAS-Seaice 2020-09-30 12:39:33 -0500e0833a56f78ef26d55eba3534d1b1b537f59ed92update mpas-source: Modify ocean freezing temperature to match MPAS-Seaiceeditcomponents/mpas-sourcecomponents/elm/src/biogeophys/SoilStateType.F90c3bb9b56aa7d9e950eb3fd2d836a121938d8a8e71601487621000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRestart from existing land files that do not contain required variables for plant hydraulics. 2020-09-30 10:40:21 -0700c3bb9b56aa7d9e950eb3fd2d836a121938d8a8e7Restart from existing land files that do not contain required variables for plant hydraulics.editcomponents/elm/src/biogeophys/SoilStateType.F90components/elm/src/biogeophys/SoilStateType.F9082c7295d3b75e42d8f6cd01054cfc3ab554ac8ec1601487621000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdd comments. 2020-09-30 10:40:21 -070082c7295d3b75e42d8f6cd01054cfc3ab554ac8ecAdd comments.editcomponents/elm/src/biogeophys/SoilStateType.F90components/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-nameliste5fd63337fa8592ec85c09abccb74c5a5381e3a51601487683000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate bld scripts autogenerated from Registry changes 2020-09-30 12:41:23 -0500e5fd63337fa8592ec85c09abccb74c5a5381e3a5Update bld scripts autogenerated from Registry changeseditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml1c87685c0aee87e6b2f10cb2a0e1e03493d673321601487852000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate config_open_ocean_freezing_temperature_coeff 2020-09-30 12:44:12 -05001c87685c0aee87e6b2f10cb2a0e1e03493d67332Update config_open_ocean_freezing_temperature_coeffeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/cam/phys_grid.F9054af3c1e6ad5e7fb3fae40827c3c8e06481c111b1601495947000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comIncrease field widths in atm_chunk_cost.txt The field width for the chunk id in the file atm_chunk_cost.txt is too small when the number of chunks is 500,000 or larger, resulting in the output of "*****". The field width for the process id in the file is also too small when the number of processes is 1,000,001 or larger. Here both of these conditions are checked for. If either is true, then the field widths for chunk id and process id are increased enough to support chunk and process ids as large as 999,999,999 . [BFB] 2020-09-30 12:59:07 -070054af3c1e6ad5e7fb3fae40827c3c8e06481c111bIncrease field widths in atm_chunk_cost.txteditcomponents/eam/src/physics/cam/phys_grid.F90cime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml78d94e8bc417b0fded7277845c2560b9f7bfe7681601499541000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govCompiler change after Tulip OS upgrade 2020-09-30 15:59:01 -050078d94e8bc417b0fded7277845c2560b9f7bfe768Compiler change after Tulip OS upgradeeditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/elm/src/main/surfrdMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/main/controlMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/main/surfrdUtilsMod.F9080f1bf62251e3d1854d2b6805db03d04ed44e8f91601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds support to put crops different landunits Crops from PCT_NAT_PFT are now put on different landunits if create_crop_landunit=.true. 2020-09-30 15:27:57 -070080f1bf62251e3d1854d2b6805db03d04ed44e8f9Adds support to put crops different landunitseditcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/main/initGridCellsMod.F90components/elm/src/main/surfrdUtilsMod.F90e7d0b1e2ae47551ef4e55b9819808a46fcaf1b2c1601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes to fractions based on global run 2020-09-30 15:27:57 -0700e7d0b1e2ae47551ef4e55b9819808a46fcaf1b2cFixes to fractions based on global runeditcomponents/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/surfrdUtilsMod.F90f4d01b856a2684ae4fe892b4fe21fca806805b511601504877000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes memory leak 2020-09-30 15:27:57 -0700f4d01b856a2684ae4fe892b4fe21fca806805b51Fixes memory leakeditcomponents/elm/src/main/surfrdUtilsMod.F90components/eam/bld/config_files/horiz_grid.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcime_config/config_grids.xml60d68435de33fdad4ae012922aea5b961514aeef1601525679000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govAdd theta-SL-pg2 config for EAM Antarcrica RRM theta-SL-pg2 configuration and supporting files are added for grid ne0np4_antarcticax4v1.pg2_r0125_ne0np4_antarcticax4v1.pg2 with ocean oRRS15to5. [BFB] 2020-09-30 23:14:39 -050060d68435de33fdad4ae012922aea5b961514aeefAdd theta-SL-pg2 config for EAM Antarcrica RRMeditcomponents/eam/bld/config_files/horiz_grid.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcime_config/config_grids.xmlcomponents/mosart/src/riverroute/RtmVar.F90components/mosart/src/riverroute/RtmHistFile.F905ccde9cba2224374ecf7db877f2167d9745540711601527334000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate mosart global attributes Update mosart global attributes in history files. Rearrange order and change RTM to MOSART. Remove old svn Version 2020-09-30 21:42:14 -07005ccde9cba2224374ecf7db877f2167d974554071Update mosart global attributeseditcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/riverroute/RtmHistFile.F90components/eam/src/control/cam_history.F900224e419af9e82135396cf2e5049cfaae66e9d0c1601528749000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd contact email to eam global attributes Add contact email to eam global attributes 2020-09-30 22:05:49 -07000224e419af9e82135396cf2e5049cfaae66e9d0cAdd contact email to eam global attributeseditcomponents/eam/src/control/cam_history.F90components/homme/cmake/machineFiles/sandiatoss3-bfb.cmakeb4f508303e89dcf4d5fef305a2122aed407240bb1601571214000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchanges for skybridge bfb test 2020-10-01 10:53:34 -0600b4f508303e89dcf4d5fef305a2122aed407240bbchanges for skybridge bfb testeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake.gitmodulesc11b842de7750ad8aeba522870cf93814d74a7281601591385000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comrevert gitmodules formatting 2020-10-01 17:29:45 -0500c11b842de7750ad8aeba522870cf93814d74a728revert gitmodules formattingedit.gitmodulescomponents/eam/bld/config_files/horiz_grid.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcime_config/config_grids.xml2590a1ac155c98d4f8232dad2821b864272cd9431601592839000http://carson.math.uwm.edu/jenkins/user/ac.wlinac.wlinac.wlin@blueslogin2.lcrc.anl.govUpdate ATM2LND_SMAP and other corrections 2020-10-01 17:53:59 -05002590a1ac155c98d4f8232dad2821b864272cd943Update ATM2LND_SMAP and other correctionseditcomponents/eam/bld/config_files/horiz_grid.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcime_config/config_grids.xmlcomponents/eam/src/physics/crm/samxx/test/perf_mod.F90components/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/eam/src/physics/crm/samxx/test/shr_const_mod.F90components/eam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shcomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90components/cam/src/physics/crm/samxx/test/perf_mod.F90733cba62845c2b8de4563e00460541e703cd7d181601606894000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFinish moving cam to eam Finish moving cam to eam by moving 3 files from cam/src/physics/crm/samxx that were missed. 2020-10-01 21:48:14 -0500733cba62845c2b8de4563e00460541e703cd7d18Finish moving cam to eamaddcomponents/eam/src/physics/crm/samxx/test/perf_mod.F90deletecomponents/cam/src/physics/crm/samxx/test/shr_const_mod.F90addcomponents/eam/src/physics/crm/samxx/test/shr_const_mod.F90deletecomponents/cam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shaddcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_pgi.shdeletecomponents/cam/src/physics/crm/samxx/test/perf_mod.F90cime_config/machines/Depends.ibm.cmakecime_config/machines/Depends.intel.cmakeeaa2ac8953593545092d445c34f164d411211d0f1601615275000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing new paths 2020-10-02 00:07:55 -0500eaa2ac8953593545092d445c34f164d411211d0ffixing new pathseditcime_config/machines/Depends.ibm.cmakeeditcime_config/machines/Depends.intel.cmakecomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnml7cccaea7e8b8fb1ff1874a43aaed354cf6d787df1601651348000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate ICG file datestamps for EC30to60E2r2 2020-10-02 10:09:08 -05007cccaea7e8b8fb1ff1874a43aaed354cf6d787dfUpdate ICG file datestamps for EC30to60E2r2editcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmldiagnostic_v2_0/draw_plots_hoz_3D.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/draw_hollfiller.pydiagnostic_v2_0/draw_large_scale.pydiagnostic_v2_0/draw_clubb_skew.pydiagnostic_v2_0/draw_rain.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/draw_clubb_budget.pydiagnostic_v2_0/draw_clubb_standard.pydiagnostic_v2_0/draw_plots_hoz_2D.pydiagnostic_v2_0/draw_silhs_standard.pydiagnostic_v2_0/draw_e3sm_budget.pydiagnostic_v2_0/draw_micro_budget.py056318076f5a17604ee3b03c741f131f6f80de171601659020000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the E3SM-CLUBB plots to create a new directory called climo_2 within the case/run/ directory, rather than dump everything within the outer case directory. 2020-10-02 12:17:00 -0500056318076f5a17604ee3b03c741f131f6f80de17I updated the E3SM-CLUBB plots to create a new directory callededitdiagnostic_v2_0/draw_e3sm_budget.pyeditdiagnostic_v2_0/draw_silhs_standard.pyeditdiagnostic_v2_0/draw_large_scale.pyeditdiagnostic_v2_0/draw_clubb_skew.pyeditdiagnostic_v2_0/draw_clubb_budget.pyeditdiagnostic_v2_0/draw_clubb_standard.pyeditdiagnostic_v2_0/draw_hollfiller.pyeditdiagnostic_v2_0/draw_rain.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/draw_plots_hoz_3D.pyeditdiagnostic_v2_0/draw_micro_budget.pyeditdiagnostic_v2_0/draw_plots_hoz_2D.pyrun_silhs_anvil_gust.csh7cd693c92c28c3184c6d3abfcfb947553302e0d61601659626000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the run_silhs_anvil_gust.csh runscript to include the CLUBB rel_humidity output variable. 2020-10-02 12:27:06 -05007cd693c92c28c3184c6d3abfcfb947553302e0d6I updated the run_silhs_anvil_gust.csh runscript to includeeditrun_silhs_anvil_gust.cshpostprocessing/vdiag_20130807.cshpostprocessing/amwg_variab_remap_ne30.csh9a809abd09d7dbc1972cee4cfd1656c6bcb3295b1601662988000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have added the files necessary for running AMWG variability package to my postprocessing directory. 2020-10-02 13:23:08 -05009a809abd09d7dbc1972cee4cfd1656c6bcb3295bI have added the files necessary for running AMWG variabilityaddpostprocessing/amwg_variab_remap_ne30.cshaddpostprocessing/vdiag_20130807.cshcomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake5e083c0837ef98451065591b14a34b84dfdbba431601668514000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comadd avx=0 to anvil, skybridge optimized setup 2020-10-02 14:55:14 -05005e083c0837ef98451065591b14a34b84dfdbba43add avx=0 to anvil, skybridge optimized setupeditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakeeditcomponents/homme/cmake/machineFiles/anvil.cmakecime_config/tests.py204bf98115baa707cfd4484e5758c42c6de617501601672016000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate fully coupled e3sm_prod test to v2 Update fully coupled e3sm_prod test to v2 config SMS_Ld1.ne30pg2_r05_EC30to60E2r2-1900_ICG.A_WCYCL1850S_CMIP6 2020-10-02 15:53:36 -0500204bf98115baa707cfd4484e5758c42c6de61750Update fully coupled e3sm_prod test to v2editcime_config/tests.pycimecomponents/cice/cime_config/buildlib_cmakecomponents/cice/bld/configurecomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildnml47dfbfee9acc51db25b61cd371279c629f29989f1601677984000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govcice and cime changes for cime changes to rename CCSM_cppdefs to CIME_cppdefs. We are keeping both for right now (one is a copy of the other) to give models time to adjust) 2020-10-02 18:33:04 -040047dfbfee9acc51db25b61cd371279c629f29989fcice and cime changes for cime changes to rename CCSM_cppdefs to CIME_cppdefs. We are keeping both for right now (one is a copy of the other) to give models time to adjust)editcomponents/cice/bld/configureeditcimeeditcomponents/cice/cime_config/buildlibeditcomponents/cice/cime_config/buildnmleditcomponents/cice/cime_config/buildlib_cmakecomponents/cmake/build_model.cmake48442f391b14cf5739faa22ac1738834e42758431601678750000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govchanges to components/cmake/build_model.cmake for CIME_cppdefs file 2020-10-02 18:45:50 -040048442f391b14cf5739faa22ac1738834e4275843changes to components/cmake/build_model.cmake for CIME_cppdefs fileeditcomponents/cmake/build_model.cmakecomponents/eam/cime_config/buildlibcomponents/eam/bld/configuref80c8d1fdad321fce03f46b4f62d581595a113011601679524000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govchanges to E3SM/components/eam/ for CIME_cppdefs 2020-10-02 18:58:44 -0400f80c8d1fdad321fce03f46b4f62d581595a11301changes to E3SM/components/eam/ for CIME_cppdefseditcomponents/eam/bld/configureeditcomponents/eam/cime_config/buildlibcomponents/mosart/cime_config/buildlib_cmakecomponents/elm/bld/configurecomponents/elm/cime_config/buildlibcomponents/cice/cime_config/buildlib7b8c6459ff151bf107cfef38c35425405077ecdd1601681033000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govfixed up cice, elm, and mosart 2020-10-02 19:23:53 -04007b8c6459ff151bf107cfef38c35425405077ecddfixed up cice, elm, and mosarteditcomponents/elm/bld/configureeditcomponents/elm/cime_config/buildlibeditcomponents/cice/cime_config/buildlibeditcomponents/mosart/cime_config/buildlib_cmakecomponents/cice/cime_config/buildlib2459dc265daa6c4263b071a450ed21a42f0673561601681523000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 2020-10-02 19:32:03 -04002459dc265daa6c4263b071a450ed21a42f067356Improved /components/cice/cime_config/buildlibeditcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib3474bec17963f9c4d1b8bcd3051bf6ee96e2b1981601681568000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 2 2020-10-02 19:32:48 -04003474bec17963f9c4d1b8bcd3051bf6ee96e2b198Improved /components/cice/cime_config/buildlib 2editcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildliba8629911da4c0058ccd1fe5ad7b68f3f640c31221601681784000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved /components/cice/cime_config/buildlib 3 2020-10-02 19:36:24 -0400a8629911da4c0058ccd1fe5ad7b68f3f640c3122Improved /components/cice/cime_config/buildlib 3editcomponents/cice/cime_config/buildlibcomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake19fa7dff992a563d4e2c2b02ad4e04e0e756b3b01601774019000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comreverting avx_ver=0 from anvil and skybridge, causing wrong flags 2020-10-03 20:13:39 -050019fa7dff992a563d4e2c2b02ad4e04e0e756b3b0reverting avx_ver=0 from anvil and skybridge, causing wrong flagseditcomponents/homme/cmake/machineFiles/anvil.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakecomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlee2c3e5a8717375616690ad3675185d15ab9ac921601825262000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govInitial scripts support for new WC14to60E2r3 ocn/ice grid 2020-10-04 10:27:42 -0500ee2c3e5a8717375616690ad3675185d15ab9ac92Initial scripts support for new WC14to60E2r3 ocn/ice grideditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-seaice/cime_config/buildnmleditcime_config/config_grids.xmlcime_config/config_grids.xml2034eacefcd986fa502a6e2caffb8c891f1ed16f1601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd WC14to60E2r3 grid description 2020-10-04 10:27:43 -05002034eacefcd986fa502a6e2caffb8c891f1ed16fAdd WC14to60E2r3 grid descriptioneditcime_config/config_grids.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml61d5569b241ba1c3c5333ae4878d288198bd32e91601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-ocean defaults for new WC14to60E2r3 grid 2020-10-04 10:27:43 -050061d5569b241ba1c3c5333ae4878d288198bd32e9Update mpas-ocean defaults for new WC14to60E2r3 grideditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmla1efefda3510d947cbfa7a9c867cf8b35b3db5a21601825263000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate WC14to60 mapping and domain files 2020-10-04 10:27:43 -0500a1efefda3510d947cbfa7a9c867cf8b35b3db5a2Update WC14to60 mapping and domain fileseditcime_config/config_grids.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xml2585a13365735f581dfc4dad3d39dd5aa352ae891601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd a separate grid for the 1900 spinup of this mesh 2020-10-04 10:28:30 -05002585a13365735f581dfc4dad3d39dd5aa352ae89Add a separate grid for the 1900 spinup of this mesheditcime_config/config_grids.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml40b047b5ca2ce42389060cf6561cf6f7db74c93d1601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govSet config_hmix_use_ref_cell_width to true for the WC14to60E2r3 grid 2020-10-04 10:28:30 -050040b047b5ca2ce42389060cf6561cf6f7db74c93dSet config_hmix_use_ref_cell_width to true for the WC14to60E2r3 grideditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnml896c3914c5961e9abf18984e38c6a304588861021601825310000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate datestamp for WC14to60E2r3 ICG files 2020-10-04 10:28:30 -0500896c3914c5961e9abf18984e38c6a30458886102Update datestamp for WC14to60E2r3 ICG fileseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmla703e22a424774c0d514209cdcb0db443c8cfd381601825601000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate grid alias for WC14to60E2r3 to use EAM instead of CAM5 2020-10-04 10:33:21 -0500a703e22a424774c0d514209cdcb0db443c8cfd38Update grid alias for WC14to60E2r3 to use EAM instead of CAM5editcime_config/config_grids.xmlcime612fc80c5471a13229b2f6053f7eb221890a62a21601854408000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate docn config to add EAMe Update CIMEs docn to add EAM to the 20TR_CMIP6 component in docn. Needed for the F20TRC5-CMIP6 compset. 2020-10-04 18:33:28 -0500612fc80c5471a13229b2f6053f7eb221890a62a2Update docn config to add EAMeeditcimecomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/config_files/definition.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/configure7f2df81504a10b7e53df6eace1aec8f5ba90a1ae1601927626000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt1 - cime and build configure modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/cime_config/config_component.xml 2020-10-05 13:53:46 -06007f2df81504a10b7e53df6eace1aec8f5ba90a1aeRemove UNICON pt1 - cime and build configureeditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/bld/configureeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/dynamics/sld/inidat.F90components/eam/src/control/runtime_opts.F90components/eam/src/dynamics/eul/inidat.F90components/eam/src/dynamics/fv/inidat.F90components/eam/src/dynamics/se/inidat.F90d81665adae92d507b759a51af78086e54039fee21601927829000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt2 - misc stuff outside physics modified: components/eam/src/chemistry/modal_aero/aero_model.F90 modified: components/eam/src/control/runtime_opts.F90 modified: components/eam/src/dynamics/eul/inidat.F90 modified: components/eam/src/dynamics/fv/inidat.F90 modified: components/eam/src/dynamics/se/inidat.F90 modified: components/eam/src/dynamics/sld/inidat.F90 2020-10-05 13:57:09 -0600d81665adae92d507b759a51af78086e54039fee2Remove UNICON pt2 - misc stuff outside physicseditcomponents/eam/src/control/runtime_opts.F90editcomponents/eam/src/dynamics/se/inidat.F90editcomponents/eam/src/dynamics/eul/inidat.F90editcomponents/eam/src/dynamics/fv/inidat.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/dynamics/sld/inidat.F90components/eam/src/physics/cam/phys_control.F90components/eam/src/physics/crm/vertical_diffusion.F90components/eam/src/physics/cam/restart_physics.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/vertical_diffusion.F902d2eb1b9f474de13bdd0090d46ff5d240685cdac1601927911000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt3 - general physics changes modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/cam/physpkg.F90 modified: components/eam/src/physics/cam/restart_physics.F90 modified: components/eam/src/physics/cam/vertical_diffusion.F90 modified: components/eam/src/physics/crm/physpkg.F90 modified: components/eam/src/physics/crm/vertical_diffusion.F90 2020-10-05 13:58:31 -06002d2eb1b9f474de13bdd0090d46ff5d240685cdacRemove UNICON pt3 - general physics changeseditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/cam/restart_physics.F90editcomponents/eam/src/physics/cam/vertical_diffusion.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/crm/vertical_diffusion.F90editcomponents/eam/src/physics/crm/physpkg.F90components/eam/src/physics/cam/micro_mg1_0.F90components/eam/src/physics/cam/cldwat2m_macro.F90components/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/convect_shallow.F90components/eam/src/physics/cam/convect_deep.F90components/eam/src/physics/cam/macrop_driver.F90cb204c0fa089417502964799c0f48d35076ab4291601928193000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt4 - convection+micro+macro physics modified: components/eam/src/physics/cam/cldwat2m_macro.F90 modified: components/eam/src/physics/cam/convect_deep.F90 modified: components/eam/src/physics/cam/convect_shallow.F90 modified: components/eam/src/physics/cam/macrop_driver.F90 modified: components/eam/src/physics/cam/micro_mg1_0.F90 modified: components/eam/src/physics/cam/micro_mg_cam.F90 2020-10-05 14:03:13 -0600cb204c0fa089417502964799c0f48d35076ab429Remove UNICON pt4 - convection+micro+macro physicseditcomponents/eam/src/physics/cam/cldwat2m_macro.F90editcomponents/eam/src/physics/cam/convect_deep.F90editcomponents/eam/src/physics/cam/micro_mg1_0.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90editcomponents/eam/src/physics/cam/convect_shallow.F90editcomponents/eam/src/physics/cam/macrop_driver.F90cime_config/config_grids.xml5d065133610f26f4b4e4e1cc76e2657f5ddd3d2a1601928567000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mapping and domain files for EC30to60E2r2 grid 2020-10-05 15:09:27 -05005d065133610f26f4b4e4e1cc76e2657f5ddd3d2aUpdate mapping and domain files for EC30to60E2r2 grideditcime_config/config_grids.xmlcomponents/eam/src/physics/cam/unicon.F90components/eam/src/physics/cam/unicon_utils.F90components/eam/src/physics/cam/unicon_cam.F90a3121a450451fd1ea278b3bcf953a781521f4d041601928897000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt5 - unicon files deleted: components/eam/src/physics/cam/unicon.F90 deleted: components/eam/src/physics/cam/unicon_cam.F90 deleted: components/eam/src/physics/cam/unicon_utils.F90 2020-10-05 14:14:57 -0600a3121a450451fd1ea278b3bcf953a781521f4d04Remove UNICON pt5 - unicon filesdeletecomponents/eam/src/physics/cam/unicon.F90deletecomponents/eam/src/physics/cam/unicon_utils.F90deletecomponents/eam/src/physics/cam/unicon_cam.F90components/homme/cmake/machineFiles/summit-p9-omp.cmakecomponents/homme/cmake/FindAVX.cmakecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX256D.hppcomponents/homme/src/share/cxx/Config.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX512D.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Util.hppcomponents/homme/src/share/cxx/utilities/VectorUtils.hppcomponents/homme/cmake/SetCompilerFlags.cmakecomponents/homme/cmake/machineFiles/waterman.cmakecomponents/homme/src/share/cxx/Hommexx_Session.cppcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakecomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakecomponents/homme/cmake/machineFiles/weaver.cmakecomponents/homme/src/share/cxx/Hommexx_config.h.incomponents/homme/src/share/cxx/Types.hppcomponents/homme/src/share/cxx/Dimensions.hppcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector.hppcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmaked9b3c80136d7c436540a425ed94002cc33783f8d1601930836000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: using exclusively SIMD Vector for Scalar type. This modification implies: - no more AVX256 or AVX512 tags - no more AVX_VERSION cmake option (or CPP macro) - no more need for FindAVX cmake utility - AVX compiler flag determined by Kokkos_ARCH_XYZ config options 2020-10-05 14:47:16 -0600d9b3c80136d7c436540a425ed94002cc33783f8dHomme: using exclusively SIMD Vector for Scalar type.editcomponents/homme/src/share/cxx/utilities/VectorUtils.hppeditcomponents/homme/src/share/cxx/Dimensions.hppeditcomponents/homme/src/share/cxx/Config.hppeditcomponents/homme/cmake/machineFiles/summit-gpumpi.cmakeeditcomponents/homme/cmake/machineFiles/summit-p9-noomp.cmakeeditcomponents/homme/src/share/cxx/Hommexx_config.h.ineditcomponents/homme/src/share/cxx/vector/KokkosKernels_Util.hppeditcomponents/homme/cmake/SetCompilerFlags.cmakeeditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/vector/KokkosKernels_Vector.hppeditcomponents/homme/cmake/machineFiles/summit-gpumpi-movies.cmakeeditcomponents/homme/cmake/machineFiles/summit-p9-omp.cmakedeletecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX256D.hppaddcomponents/homme/cmake/machineFiles/weaver.cmakeeditcomponents/homme/src/share/cxx/Types.hppdeletecomponents/homme/src/share/cxx/vector/KokkosKernels_Vector_AVX512D.hppdeletecomponents/homme/cmake/machineFiles/waterman.cmakedeletecomponents/homme/cmake/FindAVX.cmakecime_config/allactive/config_pesall.xml879efc8f1249a3e00626a0b5f966728846b5c6171601934366000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd pe-layout for T62_oEC60to30v3 DTESTM on sandiatoss3 on 4 nodes 2020-10-05 16:46:06 -0500879efc8f1249a3e00626a0b5f966728846b5c617Add pe-layout for T62_oEC60to30v3 DTESTM on sandiatoss3 on 4 nodeseditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/micro_mg1_0.F90components/eam/src/physics/cam/cldwat2m_macro.F90components/eam/src/physics/cam/micro_mg_cam.F9071ff3fa446d487e1619f7ab93fb1650ab1360db21601937284000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove UNICON pt6 - fix micro/macro modified: components/eam/src/physics/cam/cldwat2m_macro.F90 modified: components/eam/src/physics/cam/micro_mg1_0.F90 modified: components/eam/src/physics/cam/micro_mg_cam.F90 2020-10-05 18:34:44 -040071ff3fa446d487e1619f7ab93fb1650ab1360db2Remove UNICON pt6 - fix micro/macroeditcomponents/eam/src/physics/cam/micro_mg1_0.F90editcomponents/eam/src/physics/cam/cldwat2m_macro.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/zm_conv.F90components/eam/src/physics/cam/zm_conv_intr.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/physics/cam/physpkg.F90737f66df5f56564f9b87e8193a06af797051796f1601937431000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove trigmem modified: components/eam/src/physics/cam/physpkg.F90 modified: components/eam/src/physics/cam/zm_conv.F90 modified: components/eam/src/physics/cam/zm_conv_intr.F90 modified: components/eam/src/physics/crm/physpkg.F90 2020-10-05 18:37:11 -0400737f66df5f56564f9b87e8193a06af797051796fRemove trigmemeditcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/cam/zm_conv.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/cam/zm_conv_intr.F90components/eam/src/control/cam_history.F90cf203e8d557120666eac0be2427cbe94c54c80bf1601957375000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd history global att to eam Add history global attribute to eam. remove institution, make contact lowercase 2020-10-05 21:09:35 -0700cf203e8d557120666eac0be2427cbe94c54c80bfAdd history global att to eameditcomponents/eam/src/control/cam_history.F90components/elm/src/main/histFileMod.F909385596d57317d5fd0a4fed13b1750770636ce7d1601957519000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate elm global atts Update elm global attributes. remove institution and make contact lower case 2020-10-05 21:11:59 -07009385596d57317d5fd0a4fed13b1750770636ce7dUpdate elm global attseditcomponents/elm/src/main/histFileMod.F90components/mosart/src/riverroute/RtmHistFile.F90b211e0b2f3d6faf0f982d67be5b9ced51e19d3701601957599000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate mosart global atts Update mosart global attributes. Remove institution and make contact lower case 2020-10-05 21:13:19 -0700b211e0b2f3d6faf0f982d67be5b9ced51e19d370Update mosart global attseditcomponents/mosart/src/riverroute/RtmHistFile.F90components/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake10e2af0c31873190b39b7a40e102ad076b1510471602019626000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comremove avx flag as it is resolved 2020-10-06 16:27:06 -050010e2af0c31873190b39b7a40e102ad076b151047remove avx flag as it is resolvededitcomponents/homme/cmake/machineFiles/anvil-bfb.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecime_config/allactive/config_pesall.xmlcime_config/config_grids.xmled57d05aff3709d0c4e89159251d0bdd1e527f3d1602027723000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govFiles for northamericax4v1pg2_r0125_WC14to60E2r3(_ICG) 2020-10-06 16:42:03 -0700ed57d05aff3709d0c4e89159251d0bdd1e527f3dFiles for northamericax4v1pg2_r0125_WC14to60E2r3(_ICG)editcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmlcime_config/allactive/config_pesall.xmlec54651e110e9f5bbca6adc47b91961ce1028fe01602027911000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govAdjusting PE layouts for compy and a%ne0np4_northamericax4v1.pg2_l%.+_oi%WC14to60E2r3. Modified existing S,M and added L. S - 25 nodes 1.4 sypd estimated 40x1 M - 74 nodes 4.4 sypd estimated 20x2 ie threaded! L - 111 nodes 5.2 sypd estimated 40x1 2020-10-06 16:45:11 -0700ec54651e110e9f5bbca6adc47b91961ce1028fe0Adjusting PE layouts for compy and a%ne0np4_northamericax4v1.pg2_l%.+_oi%WC14to60E2r3.editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml27fffaa9170c1f4cbe0b9db00af25df2a33338251602027958000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govUpdate the 'L' (Large) default PE layout for compy and RRM V2. This one uses 115 nodes and 20x2 2020-10-06 16:45:58 -070027fffaa9170c1f4cbe0b9db00af25df2a3333825Update the 'L' (Large) default PE layout for compy and RRM V2.editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xmlcime_config/config_grids.xml7b8ec2258080561b7f79ab4111808d25e9f006a61602029315000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govNA-ocn WC RRM: Updates for CAM -> EAM. 2020-10-06 17:08:35 -07007b8ec2258080561b7f79ab4111808d25e9f006a6NA-ocn WC RRM: Updates for CAM -> EAM.editcime_config/allactive/config_pesall.xmleditcime_config/config_grids.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_pio.xmlcime_config/machines/config_machines.xml7cf569461fddd35879d1de0b7e9a68f7bc1bf6e21602034680000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comMachine file changes for PNNL Sooty [BFB] - Bit-For-Bit 2020-10-06 18:38:00 -07007cf569461fddd35879d1de0b7e9a68f7bc1bf6e2Machine file changes for PNNL Sootyeditcime_config/machines/config_pio.xmleditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/zm_conv_intr.F90components/eam/bld/namelist_files/namelist_defaults_cam.xml4e807a912099df1aa099daa5cb24968b6fb3328d1602088471000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFinish removing trigmem option modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/zm_conv_intr.F90 2020-10-07 12:34:31 -04004e807a912099df1aa099daa5cb24968b6fb3328dFinish removing trigmem optioneditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/zm_conv_intr.F90editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtd30c955981aada954d73b8256248854fbd950a1a1602093534000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Removed pointless include dir in share_kokkos_ut CMakeLists.txt 2020-10-07 11:58:54 -0600d30c955981aada954d73b8256248854fbd950a1aHomme: Removed pointless include dir in share_kokkos_ut CMakeLists.txteditcomponents/homme/test_execs/share_kokkos_ut/CMakeLists.txtcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecomponents/homme/cmake/machineFiles/anvil.cmakecomponents/homme/cmake/machineFiles/anvil-bfb.cmakecomponents/homme/cmake/machineFiles/sandiatoss3.cmake5c2ccc4c7abd1ffc1c2c3321ac5c1e064a3aa0801602093562000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: Setting kokkos arch in some mach file used for nightlies 2020-10-07 11:59:22 -06005c2ccc4c7abd1ffc1c2c3321ac5c1e064a3aa080Homme: Setting kokkos arch in some mach file used for nightlieseditcomponents/homme/cmake/machineFiles/sandiatoss3.cmakeeditcomponents/homme/cmake/machineFiles/anvil-bfb.cmakeeditcomponents/homme/cmake/machineFiles/anvil.cmakeeditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecomponents/homme/test_execs/CMakeLists.txtcomponents/homme/CMakeLists.txt532fffe020a5a5565be53695c5301edb635a10d71602094507000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: enable unit tests only in BFB builds 2020-10-07 12:15:07 -0600532fffe020a5a5565be53695c5301edb635a10d7Homme: enable unit tests only in BFB buildseditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/CMakeLists.txtcimecomponents/cice/bld/configurecomponents/cmake/build_model.cmakecomponents/cice/cime_config/buildlibcomponents/eam/bld/configurecomponents/mosart/cime_config/buildlib_cmakecomponents/cice/cime_config/buildlib_cmakecomponents/eam/cime_config/buildlibcomponents/elm/cime_config/buildlibcomponents/elm/bld/configurecomponents/cice/cime_config/buildnml6d6f6cc10dfa24eb388e9cf2f411ff2e8b2b41d41602119042000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govImproved e3sm commits to 1)Open the new CIME_cppdefs file if the file exists 2)Open and read the old CCSM_cppdefs file if the system can not find the CIME_cppdefs file 2020-10-07 21:04:02 -04006d6f6cc10dfa24eb388e9cf2f411ff2e8b2b41d4Improved e3sm commits to 1)Open the new CIME_cppdefs file if the file exists 2)Open and read the old CCSM_cppdefs file if the system can not find the CIME_cppdefs fileeditcomponents/elm/cime_config/buildlibeditcomponents/cice/bld/configureeditcomponents/eam/cime_config/buildlibeditcimeeditcomponents/cice/cime_config/buildlibeditcomponents/cice/cime_config/buildlib_cmakeeditcomponents/elm/bld/configureeditcomponents/mosart/cime_config/buildlib_cmakeeditcomponents/eam/bld/configureeditcomponents/cice/cime_config/buildnmleditcomponents/cmake/build_model.cmakecomponents/mosart/cime_config/buildlib_cmake4f3192757e345ea4b89d7dc5d0ea183c1b7558df1602120013000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govFixed white space. 2020-10-07 21:20:13 -04004f3192757e345ea4b89d7dc5d0ea183c1b7558dfFixed white space.editcomponents/mosart/cime_config/buildlib_cmakecomponents/mosart/cime_config/buildlib_cmake94b533b0c5bf135f32d9d54456ff6e5b1057743c1602120042000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govFixed white space.a 2020-10-07 21:20:42 -040094b533b0c5bf135f32d9d54456ff6e5b1057743cFixed white space.aeditcomponents/mosart/cime_config/buildlib_cmakecomponents/elm/bld/configurec4ead048bd1b2a09308bd8c7ab5da07fe9df05471602120424000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govfixed some formatting 2020-10-07 21:27:04 -0400c4ead048bd1b2a09308bd8c7ab5da07fe9df0547fixed some formattingeditcomponents/elm/bld/configurecomponents/homme/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txt4d0cbfad2df1d81d2788177a72fbfa6e835c96d91602122337000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing some cmake logic regarding auto-enabling of targets 2020-10-07 19:58:57 -06004d0cbfad2df1d81d2788177a72fbfa6e835c96d9Homme: fixing some cmake logic regarding auto-enabling of targetseditcomponents/homme/CMakeLists.txteditcomponents/homme/test_execs/CMakeLists.txtcomponents/eam/src/control/cam_history.F90a224a7e77063be95c0e41ee6e7d9567f949e16f11602124411000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMove eam history attribute Move the new eam history attribute to be after the git_version like in elm, mosart. 2020-10-07 19:33:31 -0700a224a7e77063be95c0e41ee6e7d9567f949e16f1Move eam history attributeeditcomponents/eam/src/control/cam_history.F90components/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppb9fd7e20e6c26b8d0ea30bfaf24fcf9a3ef2039d1602138424000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixing odd non-bfb issue with Intel18 in Caar functor. It seems as intel 18 was not doing the correct thing with lambda-captured variables inside ivdep loops. In particular, it was as if all vector lanes were using the same Real temp, causing thrashing of results. Switching to automatic variable inside the for loop fixes it. 2020-10-08 00:27:04 -0600b9fd7e20e6c26b8d0ea30bfaf24fcf9a3ef2039dHomme: fixing odd non-bfb issue with Intel18 in Caar functor.editcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/mpas-source6b05051e4abec4511fcd590c783c99341b0db88e1602188592000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: modify Eden Greatbatch length scale; clean up flags 2020-10-08 15:23:12 -05006b05051e4abec4511fcd590c783c99341b0db88eUpdate mpas-source: modify Eden Greatbatch length scale; clean up flagseditcomponents/mpas-sourcecomponents/eam/src/physics/cam/cam_diagnostics.F90065f558093b0ef37208651af3283930dfb391bd61602190618000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govAdd additional diagnostic outputs to track Sudden Stratospheric Warming events 2020-10-08 13:56:58 -0700065f558093b0ef37208651af3283930dfb391bd6Add additional diagnostic outputs to track Sudden Stratospheric Warming eventseditcomponents/eam/src/physics/cam/cam_diagnostics.F90components/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-nameliste7134bc62c2b26d5bc30d120e4887db1c56ab5441602193414000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd auto-generated bld files corresponding to Registry changes 2020-10-08 16:43:34 -0500e7134bc62c2b26d5bc30d120e4887db1c56ab544Add auto-generated bld files corresponding to Registry changeseditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-group-listeditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmla4e38bc604d3fd264cf59eaf854ac968a9516e5e1602196200000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govFix cut-and-paste error that ended up with two single quotation marks 2020-10-08 17:30:00 -0500a4e38bc604d3fd264cf59eaf854ac968a9516e5eFix cut-and-paste error that ended up with two single quotation markseditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F9038cce64bfd1fc770bee432ed7e4cde554b1ed7661602223287000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comThis simulation is BFB with the refactored code 2020-10-08 23:01:27 -070038cce64bfd1fc770bee432ed7e4cde554b1ed766This simulation is BFB with the refactored codeeditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90editcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/rad_constituents.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90236b740da955bd55125b64fdf37c18a736840bd11602264342000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds endrun calls for blocking radiation diagnostics 2020-10-09 10:25:42 -0700236b740da955bd55125b64fdf37c18a736840bd1Adds endrun calls for blocking radiation diagnosticseditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/rrtmgp/radiation.F9040c7240aa6e13f97ce2fbed55a3f47fecd680bde1602266864000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRRTMGP test runs fine at this point 2020-10-09 11:07:44 -070040c7240aa6e13f97ce2fbed55a3f47fecd680bdeRRTMGP test runs fine at this pointeditcomponents/eam/src/physics/rrtmgp/radiation.F90editcomponents/eam/src/physics/rrtmgp/cam_optics.F90components/elm/cime_config/buildnmld1fcd1734ea675f1464ef1b3dca232f841ad889b1602268013000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes the support for user-defined grid for ELM Recent name change of the land model broke support for `-res ELM_USRDAT`. This code modification restores the support for user-defined land grids. [BFB] 2020-10-09 11:26:53 -0700d1fcd1734ea675f1464ef1b3dca232f841ad889bFixes the support for user-defined grid for ELMeditcomponents/elm/cime_config/buildnmlcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscime_config/tests.pycomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elm824b43a0094bb8a5c780aec8844f39135608a1e41602268043000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds a test for ELM_USRDAT resolution 2020-10-09 11:27:23 -0700824b43a0094bb8a5c780aec8844f39135608a1e4Adds a test for ELM_USRDAT resolutioneditcime_config/tests.pyaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elmcomponents/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90ce31b2cdf52d26ff3d2b97c7098e786c876fee931602279629000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCRM tests run fine now 2020-10-09 14:40:29 -0700ce31b2cdf52d26ff3d2b97c7098e786c876fee93CRM tests run fine noweditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/physics/crm/rrtmgp/radiation.F90editcomponents/eam/src/physics/rrtmgp/cam_optics.F90editcomponents/eam/src/physics/crm/physpkg.F90components/mpas-seaice/bld/build-namelist-sectioncomponents/mpas-seaice/bld/build-namelistcomponents/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xmlcomponents/mpas-seaice/cime_config/config_component.xmlcomponents/mpas-seaice/bld/build-namelist-group-listcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/driver/ice_comp_mct.Fcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-seaice/cime_config/config_compsets.xmlcomponents/mpas-source6f8e38f7e0f092ce116699c18c0a887a83f85a211602603254000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govAdded prescribed ice mode to MPAS-Seaice component 2020-10-13 10:34:14 -05006f8e38f7e0f092ce116699c18c0a887a83f85a21Added prescribed ice mode to MPAS-Seaice componenteditcomponents/mpas-seaice/driver/ice_comp_mct.Feditcomponents/mpas-seaice/bld/build-namelist-group-listeditcomponents/mpas-seaice/cime_config/config_compsets.xmleditcomponents/mpas-seaice/bld/build-namelisteditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmleditcomponents/mpas-seaice/cime_config/config_component.xmleditcomponents/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xmleditcomponents/mpas-seaice/bld/build-namelist-sectioneditcomponents/mpas-sourceeditcomponents/mpas-seaice/cime_config/buildnmlcomponents/cmake/build_mpas_model.cmake523d1766fd95630429ef320551a99463a60f3a3a1602605555000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comAMB fix for unused kokkos in mpas 2020-10-13 11:12:35 -0500523d1766fd95630429ef320551a99463a60f3a3aAMB fix for unused kokkos in mpaseditcomponents/cmake/build_mpas_model.cmakecime_config/allactive/config_pesall.xml98f17a6d7086bf1f52b3d4c95d658ecb08d015fc1602646412000http://carson.math.uwm.edu/jenkins/user/ambradambradambrad@cs.stanford.eduNA-ocn WC RRM: XS PE layout for cori-knl just to get something going 2020-10-13 20:33:32 -070098f17a6d7086bf1f52b3d4c95d658ecb08d015fcNA-ocn WC RRM: XS PE layout for cori-knl just to get something goingeditcime_config/allactive/config_pesall.xmlcomponents/elm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlb8a4b9bc2f491f77dce70a83ca71b685550353521602702457000http://carson.math.uwm.edu/jenkins/user/divi553divi553divi553@compy-e.pnl.govUpdate mksurfdata defaults for 0.5x0.5 res and fix a small bug The default filenames for inputs to mksurfdata at 0.5x0.5 res were not correct, so they have been updated. Also, a small tolerance bug has been fixed. A pft tolerance in normalizencheck_landuse has been updated to match its neighbor and to match the pft tolerance in the mkpft function, which is called prior to the call to normalizencheck_landuse. modified: ../../../bld/namelist_files/namelist_defaults_clm4_5.xml modified: src/mksurfdat.F90 2020-10-14 12:07:37 -0700b8a4b9bc2f491f77dce70a83ca71b68555035352Update mksurfdata defaults for 0.5x0.5 res and fix a small bugeditcomponents/elm/tools/clm4_5/mksurfdata_map/src/mksurfdat.F90editcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/mpas-sourcec0a1f2363d74040e3f54da8b8fbbd2bef82b41f01602706444000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Unreverted revert of MPAS-Seaice 2020-10-14 15:14:04 -0500c0a1f2363d74040e3f54da8b8fbbd2bef82b41f0Update mpas-source: Unreverted revert of MPAS-Seaiceeditcomponents/mpas-sourcecime102f321b927b2af05607c44f7048e143833b842f1602707773000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govAdv cime sha 2020-10-14 16:36:13 -0400102f321b927b2af05607c44f7048e143833b842fAdv cime shaeditcimecomponents/mpas-seaice/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_compsets.xmlc309c3c827aca6f2fcb408a891156d4bcedd1f641602712006000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govMove new F-compset definition to EAM 2020-10-14 16:46:46 -0500c309c3c827aca6f2fcb408a891156d4bcedd1f64Move new F-compset definition to EAMeditcomponents/mpas-seaice/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-seaice/bld/build-namelist-sectiona563790948a7fea91c795a2dfd91582f59a4678e1602712090000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govMake build-namelist-section consistent with build-namelist 2020-10-14 16:48:10 -0500a563790948a7fea91c795a2dfd91582f59a4678eMake build-namelist-section consistent with build-namelisteditcomponents/mpas-seaice/bld/build-namelist-sectioncomponents/eam/cime_config/config_compsets.xml7147e5e4837685d85da656e9a6bd79709bcc2ec61602716916000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd FC5AV1C-L-MPASSI compset 2020-10-14 18:08:36 -05007147e5e4837685d85da656e9a6bd79709bcc2ec6Add FC5AV1C-L-MPASSI compseteditcomponents/eam/cime_config/config_compsets.xmlcomponents/homme/src/share/compose_mod.F90e0e8e0d59df220f7b6f2029cb53f6c630b8ec00a1602788048000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, COMPOSE: Fix debug-build error. Passing an unused but unallocated array to C++ can trigger a failure in a debug build. Work around this by allocating a small array. 2020-10-15 11:54:08 -0700e0e8e0d59df220f7b6f2029cb53f6c630b8ec00aHomme, COMPOSE: Fix debug-build error.editcomponents/homme/src/share/compose_mod.F90components/homme/src/theta-l/share/imex_mod.F90445538bc007a5955a29a469f6bec83d024c355701602788346000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme: Use 'any' instead of 'maxval'. Noel's performance analysis showed that some maxval uses were expensive. These can be replaced by 'any'. One case can be moved outside of a loop, reducing the call count. 2020-10-15 11:59:06 -0700445538bc007a5955a29a469f6bec83d024c35570Homme: Use 'any' instead of 'maxval'.editcomponents/homme/src/theta-l/share/imex_mod.F90cime_config/allactive/config_pesall.xmlb69d106f049b32a1f33494f84019bd288a2cd4f91602803339000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdd layouts for RRM v2 config on compy. S,M,L that are all 40x1 (no threading) as well as ST,MT,LT that are all 20x2 and seem to be a little quicker. 2020-10-15 16:08:59 -0700b69d106f049b32a1f33494f84019bd288a2cd4f9Add layouts for RRM v2 config on compy.editcime_config/allactive/config_pesall.xmlexternals/kokkos80d017704954d1ddb90e21dfceab4081db52a0991602812536000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govBring in hot fix to kokkos submodule, relative to CRAYPE linking 2020-10-15 19:42:16 -060080d017704954d1ddb90e21dfceab4081db52a099Bring in hot fix to kokkos submodule, relative to CRAYPE linkingeditexternals/kokkoscomponents/elm/cime_config/buildnml615ba48a48cd30029b0aa6e95ed8483aa386e56f1602824084000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames local variable with clm to elm 2020-10-15 21:54:44 -0700615ba48a48cd30029b0aa6e95ed8483aa386e56fRenames local variable with clm to elmeditcomponents/elm/cime_config/buildnmlcomponents/mpas-source4ce8973f3b40b505bf6f151ebf3cfb2f9afc86ad1602865575000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed prescribed ice bug in seaice with category thickness limits 2020-10-16 11:26:15 -05004ce8973f3b40b505bf6f151ebf3cfb2f9afc86adUpdate mpas-source: fixed prescribed ice bug in seaice with category thickness limitseditcomponents/mpas-sourceexternals/kokkos8961aba5363acb92d220dc5d66742c247256643e1602879503000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govUpdate again kokkos version, following bug fix 2020-10-16 13:18:23 -07008961aba5363acb92d220dc5d66742c247256643eUpdate again kokkos version, following bug fixeditexternals/kokkoscomponents/cice/cime_config/buildlib686736f75cdaa4b93a6842e92547b9fd0547313e1602896227000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govI changed cice/cime_config/buildlib/ to store correct cppdef filename root in a variable which increases code efficiency and reduces excess duplication of code. I also replaced CCSM_cppdefs.new with CIME_cppdefs.new everywhere. 2020-10-16 20:57:07 -0400686736f75cdaa4b93a6842e92547b9fd0547313eI changed cice/cime_config/buildlib/ to storeeditcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib568965c7327440021b65407663f4e8829f9f9c001602896588000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govCleaned up unnecessary if statement block. 2020-10-16 21:03:08 -0400568965c7327440021b65407663f4e8829f9f9c00Cleaned up unnecessary if statement block.editcomponents/cice/cime_config/buildlibcomponents/cice/cime_config/buildlib48a94799f2965eb3a8e9682c698a95a1ca2a6a861602896824000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govRevert "Cleaned up unnecessary if statement block." This reverts commit 568965c7327440021b65407663f4e8829f9f9c00. 2020-10-16 21:07:04 -040048a94799f2965eb3a8e9682c698a95a1ca2a6a86Revert "Cleaned up unnecessary if statement block."editcomponents/cice/cime_config/buildlibcomponents/eam/src/control/forecast.F90components/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/se_single_column_mod.F90components/eam/src/dynamics/se/inidat.F90316916b9b9b3a8c3d1466825c47ed85f33aaf80f1603132258000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govmake SCM compatible with thetal dycore 2020-10-19 11:30:58 -0700316916b9b9b3a8c3d1466825c47ed85f33aaf80fmake SCM compatible with thetal dycoreeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/src/control/forecast.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/eam/src/dynamics/se/inidat.F90components/homme/utils/e3sm_test/check_mass_conservation.py590dd51e4b5963f407f1c620e65f0df17138c50e1603145436000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govMass test: Double tol on CO2_FF global mass based on compy_pgi change. 2020-10-19 15:10:36 -0700590dd51e4b5963f407f1c620e65f0df17138c50eMass test: Double tol on CO2_FF global mass based on compy_pgi change.editcomponents/homme/utils/e3sm_test/check_mass_conservation.pycomponents/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/se_single_column_mod.F90d44ba74bf0d0462bd411a7c13d0510557ce9a8971603146988000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govbug fixes for working code 2020-10-19 15:36:28 -0700d44ba74bf0d0462bd411a7c13d0510557ce9a897bug fixes for working codeeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90cimeba2285e88612b6a77e317579f712ff9461ea0d981603147096000http://carson.math.uwm.edu/jenkins/user/wpcoombwpcoombwpcoomb@sandia.govAdv cime sha to include PRs #3740 & #3741, and added that to the CIME update. 2020-10-19 18:38:16 -0400ba2285e88612b6a77e317579f712ff9461ea0d98Adv cime sha to include PRs #3740 & #3741,editcimecomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90components/eam/src/chemistry/utils/mo_util.F90b27cd1a756e52bae3643e6878929c21ade0399ea1603150917000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Use new rebin_fast in volc_radiation code and rework idxs. Noel's performance analysis pinpointed the call to rebin in read_volc_radiation_data::interpolate_lats_time_vert as a bottleneck and more generally the routines in this file. The original rebin algorithm has complexity O(nsrc*ntgt) and is run for each band separately. Add rebin_fast, which has O(max(nsrc, ntgt)) complexity and is called once for all bands. rebin_fast produces BFB output w.r.t. rebin. In addition, indexing in this file was suboptimal. Fix this. 2020-10-19 16:41:57 -0700b27cd1a756e52bae3643e6878929c21ade0399eaEAM: Use new rebin_fast in volc_radiation code and rework idxs.editcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90editcomponents/eam/src/chemistry/utils/mo_util.F90components/mpas-source21605911b1c4fdfa64ff06519875ebb15573e85e1603196406000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed bug with index in prescribed ice in seaice 2020-10-20 07:20:06 -050021605911b1c4fdfa64ff06519875ebb15573e85eUpdate mpas-source: fixed bug with index in prescribed ice in seaiceeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmlaa80330f95563da45c0931f49a8f8a7fc22bb1951603324443000http://carson.math.uwm.edu/jenkins/user/ambradambradambrad@cs.stanford.eduRRM: Add an XS Cori-KNL layout from Noel. 2020-10-21 16:54:03 -0700aa80330f95563da45c0931f49a8f8a7fc22bb195RRM: Add an XS Cori-KNL layout from Noel.editcime_config/allactive/config_pesall.xmlcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmake9426943d122e8cf0543e4b9349855a96a73f40691603330559000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comturn on xx tests 2020-10-21 20:35:59 -05009426943d122e8cf0543e4b9349855a96a73f4069turn on xx testseditcomponents/homme/cmake/machineFiles/sandiatoss3-bfb.cmakecomponents/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/bld/CLMBuildNamelist.pmfcfabed2a494cad178cd703018269cfa3ce129c31603386944000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govactivating dynamic crop fraction when prognostic crop model is turned off 2020-10-22 10:15:44 -0700fcfabed2a494cad178cd703018269cfa3ce129c3activating dynamic crop fraction when prognostic crop model is turned offeditcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90b14df2a546ef999dac5f0a25aec8eb640f75cf261603395106000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govEAM: Remove some old comments. 2020-10-22 12:31:46 -0700b14df2a546ef999dac5f0a25aec8eb640f75cf26EAM: Remove some old comments.editcomponents/eam/src/chemistry/utils/read_volc_radiation_data.F90components/eam/cime_config/buildnmlcomponents/elm/cime_config/buildnmlf3e710794f6f5c4c7f70891ab2cbffba405a4a1e1603471772000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govDefense against use of user_nl_cam after renaming cam to eam When recycling a run script for a new case, one may not realize the case specific namelist settings may still go to user_nl_cam. This change is to force users to rename it to user_nl_eam before proceeding, if user_nl_cam is still in use, or present in the case directory. Similar is done for user_nl_clm. [BFB] 2020-10-23 09:49:32 -0700f3e710794f6f5c4c7f70891ab2cbffba405a4a1eDefense against use of user_nl_cam after renaming cam to eameditcomponents/eam/cime_config/buildnmleditcomponents/elm/cime_config/buildnmlcomponents/eam/bld/config_files/defaults_se.xmlcomponents/eam/cime_config/config_component.xmla3088f64d3ac21c013ace2db8e96bda63d17986b1603517018000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfirst attempt to switch 2020-10-24 00:23:38 -0500a3088f64d3ac21c013ace2db8e96bda63d17986bfirst attempt to switcheditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/bld/config_files/defaults_se.xmlcime_config/testmods_dirs/allactive/v1cmip6/user_nl_camcime_config/testmods_dirs/allactive/v1cmip6/user_nl_eam5e2b165739a0001e51f5a6cf41fcf6cdc04cd6701603635431000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename user_nl_cam in test allactive-v1cmip6 2020-10-25 07:17:11 -07005e2b165739a0001e51f5a6cf41fcf6cdc04cd670Rename user_nl_cam in test allactive-v1cmip6deletecime_config/testmods_dirs/allactive/v1cmip6/user_nl_camaddcime_config/testmods_dirs/allactive/v1cmip6/user_nl_eamcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelistc246bf6c1230db6b7407bffe2e1fed089ebe1b521603685160000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govRemove two MOC flags 2020-10-25 21:06:00 -0700c246bf6c1230db6b7407bffe2e1fed089ebe1b52Remove two MOC flagseditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-source0e426681311454d5bc1367abe79862857fe207131603685160000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source for moc update 2020-10-25 21:06:00 -07000e426681311454d5bc1367abe79862857fe20713Update mpas-source for moc updateeditcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml282ea2ff83eac91cb1a4056cf8b0215d36d1c7821603685618000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd moc GM variables to monthly output 2020-10-25 21:13:38 -0700282ea2ff83eac91cb1a4056cf8b0215d36d1c782Add moc GM variables to monthly outputeditcomponents/mpas-ocean/cime_config/buildnmlcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/biogeochem/PhenologyFluxLimitMod.F909bd1c7a578c1aa3e6a0753880504d3e3f08b2ab11603741135000http://carson.math.uwm.edu/jenkins/user/jinyuntangjinyuntangjinyuntang@lbl.govbug fix for nitrogen fixation calculation for ECA Did a quick fix to avoid negative nitrogen fixation when the soil water content computed from the Richards' equation solver is negative. Also fixed a some typos for the flux limiter solver for phenology update. These are expected to make ELM-ECA NBFB, but CTC will not be affected. 2020-10-26 12:38:55 -07009bd1c7a578c1aa3e6a0753880504d3e3f08b2ab1bug fix for nitrogen fixation calculation for ECAeditcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeochem/PhenologyFluxLimitMod.F90externals/scorpio4ddb81ad1381270494b2c3cd455105e59706381d1603817938000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govScorpio version 1.1.4 Updating to Scorpio version 1.1.4 This release includes the following changes, * Fix for GPTL performance data corruption due to unstopped timers (when Scorpio calls fail) * Support for compilers with no C++11 regex support * ADIOS conversion tool fixes for temporal variable conversion (from ADIOS to NetCDF) * Misc bug fixes 2020-10-27 11:58:58 -05004ddb81ad1381270494b2c3cd455105e59706381dScorpio version 1.1.4editexternals/scorpiocomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_mpassie56c426ebb05152a8c26aa13e6e0602afb5eee2f1603906613000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd user_nl_mpassi for elm bgcexp testmod in order to pass automated tests 2020-10-28 12:36:53 -0500e56c426ebb05152a8c26aa13e6e0602afb5eee2fAdd user_nl_mpassi for elm bgcexp testmod in order to pass automated testsaddcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/user_nl_mpassicomponents/mpas-albany-landice/cime_config/buildlibcomponents/mosart/cime_config/buildlibcime_config/machines/Depends.craycomponents/mpas-ocean/cime_config/buildlibcomponents/cice/cime_config/buildlibcime_config/machines/Depends.pgigpucomponents/elm/cime_config/buildlibcime_config/machines/Depends.intel.cmakecimecomponents/mpas-seaice/cime_config/buildlibcime_config/machines/Depends.ibmcime_config/machines/Depends.nagcime_config/machines/Depends.gnucomponents/eam/cime_config/buildlibcime_config/machines/Depends.compy.pgicime_config/machines/Depends.intelbf86549d6fb745d6f8d40d853e0eac0fc17e4f001603918376000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govRemove support for Makefile-based builds for E3SM components 2020-10-28 14:52:56 -0600bf86549d6fb745d6f8d40d853e0eac0fc17e4f00Remove support for Makefile-based builds for E3SM componentsdeletecime_config/machines/Depends.crayeditcimeeditcime_config/machines/Depends.inteldeletecomponents/mpas-seaice/cime_config/buildlibdeletecime_config/machines/Depends.ibmdeletecime_config/machines/Depends.pgigpudeletecomponents/cice/cime_config/buildlibeditcime_config/machines/Depends.intel.cmakedeletecomponents/mpas-albany-landice/cime_config/buildlibdeletecomponents/eam/cime_config/buildlibdeletecomponents/mpas-ocean/cime_config/buildlibdeletecomponents/elm/cime_config/buildlibdeletecime_config/machines/Depends.nagdeletecime_config/machines/Depends.compy.pgideletecime_config/machines/Depends.gnudeletecomponents/mosart/cime_config/buildlibcime714fe1d94c208d088bd550b443432f8563b44b671603993876000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-10-29 11:51:16 -0600714fe1d94c208d088bd550b443432f8563b44b67another cime updateeditcimecime_config/allactive/config_pesall.xml1a8423c8f65e5e5d13f57f9e2239bf5978e063891604005140000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govFor cori-knl, update PE layout for F compsets at ne4 resolution. SYPD current with this change 1 node 18.7 S 3 node 32.6 M default 13 node 52.1 M default L [bfb] 2020-10-29 13:59:00 -07001a8423c8f65e5e5d13f57f9e2239bf5978e06389For cori-knl, update PE layout for F compsets at ne4 resolution.editcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/rrtmgp/radiation.F90006f1baa47ab4193138515945e7f33d2355a9c591604010600000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govSet fill values for radiation outputs Set the flag_xyfill flag for radiation fields added to history files in addfld calls. This fixes the problem where radiation fields can contain zeros if the output frequency is higher (more often) than the radiative update frequency. This is BFB, except for the case where 'HR' is added to output fields because we were mistakenly NOT computing and outputting this field for RRTMGP. 2020-10-29 16:30:00 -0600006f1baa47ab4193138515945e7f33d2355a9c59Set fill values for radiation outputseditcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/physics/rrtmgp/radiation.F90components/mosart/src/cpl/rof_comp_esmf.F90components/mosart/src/riverroute/RtmHistFlds.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/main/clm_initializeMod.F90components/mosart/src/cpl/rof_comp_mct.F90components/mosart/src/riverroute/RtmMod.F90components/mosart/src/riverroute/RunoffMod.F90components/elm/src/main/controlMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/mosart/src/wrm/WRM_modules.F90components/elm/src/biogeophys/CanopyHydrologyMod.F903544b84697552b26664b82ed92e27a549b9efca81604078946000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govupdate flag to allow one-way irrigation, remove unused output, remove redundant comments, fix area fraction inconsistency for coastal irrigation 2020-10-30 10:29:06 -07003544b84697552b26664b82ed92e27a549b9efca8update flag to allow one-way irrigation, remove unused output, remove redundant comments, fix area fraction inconsistency for coastal irrigationeditcomponents/mosart/src/cpl/rof_comp_mct.F90editcomponents/mosart/src/riverroute/RunoffMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/elm/src/main/clm_initializeMod.F90editcomponents/mosart/src/wrm/WRM_modules.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/mosart/src/cpl/rof_comp_esmf.F90components/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/physics/rrtmgp/radiation.F90360d4a64250f57cf2255708c484b0f37295427b61604079588000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govAdd missing HR output for RRTMGP 2020-10-30 11:39:48 -0600360d4a64250f57cf2255708c484b0f37295427b6Add missing HR output for RRTMGPeditcomponents/eam/src/physics/crm/rrtmgp/radiation.F90editcomponents/eam/src/physics/rrtmgp/radiation.F90cimeb1ecda98976ca713f152dc2d06f49f3813d0b6441604081947000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-10-30 12:19:07 -0600b1ecda98976ca713f152dc2d06f49f3813d0b644another cime updateeditcimecomponents/homme/src/share/cxx/Config.hppd0f61fde750823f8ada554f87c19046a498ba93c1604088133000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: setting vector size in eam builds 2020-10-30 14:02:13 -0600d0f61fde750823f8ada554f87c19046a498ba93cHommexx: setting vector size in eam buildseditcomponents/homme/src/share/cxx/Config.hppcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/homme/src/share/cxx/KernelVariables.hppcomponents/homme/src/share/cxx/Hommexx_config.h.incomponents/homme/src/share/cxx/Hommexx_Session.cpp9b5d72432aacea9192013e53d4577eb87d69f49f1604088230000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fix usage of HOMMEXX_CUDA_SHARE_BUFFER Using ifdef rather than if (and cmakedefine rather than cmakedefine01) makes it easier for eam builds. 2020-10-30 14:03:50 -06009b5d72432aacea9192013e53d4577eb87d69f49fHommexx: fix usage of HOMMEXX_CUDA_SHARE_BUFFEReditcomponents/homme/src/share/cxx/KernelVariables.hppeditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/kokkos_utils.hppeditcomponents/homme/src/share/cxx/Hommexx_config.h.incomponents/homme/src/share/cxx/kokkos_utils.hpp92ced758e64b210eb13435681120718496b25dcc1604088255000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fixed include path for Kokkos_Random.hpp 2020-10-30 14:04:15 -060092ced758e64b210eb13435681120718496b25dccHommexx: fixed include path for Kokkos_Random.hppeditcomponents/homme/src/share/cxx/kokkos_utils.hppcomponents/eam/bld/configure2248482ed51c5faf9d5c2e52e2205bc8cab7db681604095362000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: fix eam configure script for preqx_kokkos 2020-10-30 16:02:42 -06002248482ed51c5faf9d5c2e52e2205bc8cab7db68Hommexx: fix eam configure script for preqx_kokkoseditcomponents/eam/bld/configurecomponents/homme/cmake/Kokkos.cmakecomponents/homme/src/theta-l_kokkos/cxx/DirkFunctorImpl.hppcomponents/homme/src/share/cxx/RemapFunctor.hppcomponents/homme/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppcomponents/homme/src/theta-l_kokkos/cxx/HyperviscosityFunctorImpl.hpp6f8c9f2e8773485fba49bb232a09059dad1673401604098943000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: fixed some cmake/compiler warnings 2020-10-30 17:02:23 -06006f8c9f2e8773485fba49bb232a09059dad167340Homme: fixed some cmake/compiler warningseditcomponents/homme/CMakeLists.txteditcomponents/homme/cmake/Kokkos.cmakeeditcomponents/homme/src/theta-l_kokkos/cxx/DirkFunctorImpl.hppeditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppeditcomponents/homme/src/theta-l_kokkos/cxx/HyperviscosityFunctorImpl.hppeditcomponents/homme/src/share/cxx/RemapFunctor.hppcomponents/homme/src/share/cxx/Hommexx_Session.cppcomponents/homme/src/share/cxx/Hommexx_Session.hpp933e3c2d679c1cc2907fd1ed1c38828bc0fd3c6a1604099028000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: better handling of cxx homme session We can now have a host project call initialize/finalize_hommexx_session, without the risk of compromising kokkos session integrity. The host project simply has to set Session::m_handle_kokkos to false. The host project will now have the responsibility of init/finalize kokkos before/after using any kokkos-related feature in hommexx. 2020-10-30 17:03:48 -0600933e3c2d679c1cc2907fd1ed1c38828bc0fd3c6aHomme: better handling of cxx homme sessioneditcomponents/homme/src/share/cxx/Hommexx_Session.cppeditcomponents/homme/src/share/cxx/Hommexx_Session.hppcomponents/mosart/src/riverroute/MOSART_physics_mod.F90components/mosart/src/riverroute/RtmMod.F90components/mosart/src/riverroute/RtmHistFlds.F90343e5abcf340cb7d292d74d15e891d517c50e8071604103990000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govupdate unit in the output 2020-10-30 17:26:30 -0700343e5abcf340cb7d292d74d15e891d517c50e807update unit in the outputeditcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/mosart/src/riverroute/MOSART_physics_mod.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90components/homme/src/share/cxx/mpi/BoundaryExchange.hppec27a03aeac52f5cf003439f83d3c81b66df82af1604123663000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: added interface to BoundaryExchange The new register_field method is to handle interface field of rank-5. A similar method already existed, but required the 2nd extent to be a compile time constant. The new method accepts a runtime one. Note: I tried to fuse them into a single method, but the compiler would not let me. Fortunately, I find a way to keep a single "_impl" version of that method. 2020-10-30 23:54:23 -0600ec27a03aeac52f5cf003439f83d3c81b66df82afHomme: added interface to BoundaryExchangeeditcomponents/homme/src/share/cxx/mpi/BoundaryExchange.hppcomponents/homme/CMakeLists.txtcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakeea1f63db0082fce5de39f920080b18ff3bb28c6a1604123664000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: adding HOMME_WITHOUT_PIOLIBRARY to compile definitions of executables This is not needed for homme standalone builds. But if homme is built inside another project, we cannot know in advance the place where the macros to create the execs are called from. If they are called from *outside* the homme subfolder, all the compiler macros that were added with ADD_DEFINITION(..) (like this one) are no longer visible, and need to be manually added again. This is because ADD_DEFINITION (like INCLUDE_DIRECTORIES and others0 only affects targets built in the current folder and its subdirectories. 2020-10-30 23:54:24 -0600ea1f63db0082fce5de39f920080b18ff3bb28c6aHomme: adding HOMME_WITHOUT_PIOLIBRARY to compile definitions of executableseditcomponents/homme/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/test/unit_tests/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/CMakeLists.txt0a1fae86bfbbb4f669629155e1c5f686daf0ff7d1604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: added macro to create a library for preqx_kokkos and theta-l_kokkos It's roughly the same as createTestExec, but creates a library rather than an executable (and of course doesn't create a test). 2020-10-30 23:54:25 -06000a1fae86bfbbb4f669629155e1c5f686daf0ff7dHomme: added macro to create a library for preqx_kokkos and theta-l_kokkoseditcomponents/homme/CMakeLists.txteditcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakeeditcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/CMakeLists.txta9c317722bd09a58e77c9ef7f1e61588194e518c1604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: store blas/lapack libs location in an internal cache var As explained in the inline comment, this is needed if homme is used as a subproject in another cmake project. If so, when calling macros to create execs/libs from *outside* the homme subfolders, the cmake vars storing the location of libs found during homme's configuration (via calls to find_package(...)) would not otherwise be available anymore, because of cmake's variables scope. Stuffing those vars in the cache fixes this. 2020-10-30 23:54:25 -0600a9c317722bd09a58e77c9ef7f1e61588194e518cHomme: store blas/lapack libs location in an internal cache vareditcomponents/homme/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/src/share/cxx/prim_cxx_driver_base.F90components/homme/src/theta-l_kokkos/theta_f2c_mod.F90components/homme/src/preqx_kokkos/preqx_f2c_mod.F90components/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/preqx_kokkos/prim_driver_mod.F908ca63255f79a1f527953767d577baa71168a81e01604123665000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: created f2c module for kokkos targets, plus breaking up some functions The f2c modules allow to keep all those declarations out of prim_driver_mod, which keeps the file smaller. The breaking up of some functions into smaller ones is needed when using homme as a library. In particular, by breaking up init functions into smaller routines, we allo host project to perform additional stuff in between these smaller steps. Also, exposed some subroutines in prim_cxx_driver_base 2020-10-30 23:54:25 -06008ca63255f79a1f527953767d577baa71168a81e0Homme: created f2c module for kokkos targets, plus breaking up some functionseditcomponents/homme/src/preqx_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/CMakeLists.txteditcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/share/cxx/prim_cxx_driver_base.F90addcomponents/homme/src/theta-l_kokkos/theta_f2c_mod.F90addcomponents/homme/src/preqx_kokkos/preqx_f2c_mod.F90editcomponents/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/theta_f2c_mod.F90components/homme/src/share/cxx/ElementsGeometry.hppcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/homme/src/theta-l_kokkos/cxx/Diagnostics.cppcomponents/homme/src/preqx_kokkos/cxx/cxx_f90_interface_preqx.cppcomponents/homme/src/share/cxx/ElementsGeometry.cpped762ba1f16dbfa054a00a1e0af91658349ca0831604123666000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: minor change in ElementsGeometry initialization The surface geopotential views are inited separately, since they don't depend only on the 2d mesh, but also on the case setting. 2020-10-30 23:54:26 -0600ed762ba1f16dbfa054a00a1e0af91658349ca083Homme: minor change in ElementsGeometry initializationeditcomponents/homme/src/theta-l_kokkos/cxx/Diagnostics.cppeditcomponents/homme/src/preqx_kokkos/cxx/cxx_f90_interface_preqx.cppeditcomponents/homme/src/theta-l_kokkos/theta_f2c_mod.F90editcomponents/homme/src/share/cxx/ElementsGeometry.hppeditcomponents/homme/src/share/cxx/ElementsGeometry.cppeditcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/cxx/cxx_f90_interface_theta.cppcomponents/homme/src/share/prim_driver_base.F90components/homme/src/theta-l_kokkos/prim_driver_mod.F903770710ae2bd91d1e530b1bc0cae3408fc48d9791604123666000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: make some CAM ifdefs also check for SCREAM Some subroutines are for Homme standalone. So we should not just check whether CAM is defined before compiling/running them, but also check whether SCREAM is defined. 2020-10-30 23:54:26 -06003770710ae2bd91d1e530b1bc0cae3408fc48d979Homme: make some CAM ifdefs also check for SCREAMeditcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90editcomponents/homme/src/share/prim_driver_base.F90components/eam/src/physics/crm/rrtmgp/radiation.F907902f4b2f61873d2c2b3208340c2ac29e410ae541604196819000http://carson.math.uwm.edu/jenkins/user/bhillmabhillmabhillma@sandia.govApply fixes to MMF too 2020-10-31 19:13:39 -07007902f4b2f61873d2c2b3208340c2ac29e410ae54Apply fixes to MMF tooeditcomponents/eam/src/physics/crm/rrtmgp/radiation.F90components/mpas-source329fcdf72447aee4af6d0468e21b0ee413d10bc31604341057000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: Fix cmake for tool exes 2020-11-02 10:17:37 -0800329fcdf72447aee4af6d0468e21b0ee413d10bc3Update mpas-source: Fix cmake for tool exeseditcomponents/mpas-sourcecime96237fc46fc7adfe12aac43f872313eedc6fe9251604349017000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govanother cime update 2020-11-02 13:30:17 -070096237fc46fc7adfe12aac43f872313eedc6fe925another cime updateeditcimecomponents/homme/src/preqx_kokkos/prim_driver_mod.F90components/homme/src/theta-l_kokkos/prim_driver_mod.F90ba247642a52e0886442fceda07b1b799a4fdd6fa1604356791000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: init cxx functors before copying data into views 2020-11-02 15:39:51 -0700ba247642a52e0886442fceda07b1b799a4fdd6faHomme: init cxx functors before copying data into viewseditcomponents/homme/src/preqx_kokkos/prim_driver_mod.F90editcomponents/homme/src/theta-l_kokkos/prim_driver_mod.F90components/CMakeLists.txtbf0e1f45234a4b92dd181111ba05f04de90e856d1604362860000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAdd timing to compiles and links The output won't really make sense unless you build with -j1 2020-11-02 17:21:00 -0700bf0e1f45234a4b92dd181111ba05f04de90e856dAdd timing to compiles and linkseditcomponents/CMakeLists.txtcomponents/mosart/src/riverroute/RtmMod.F90components/mosart/src/cpl/rof_comp_mct.F90components/mosart/src/cpl/rof_comp_esmf.F909ad705c84bfd98d430aae419e2400dddc858149f1604426069000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govmake the code compatible with old MOSART parameter file 2020-11-03 09:54:29 -08009ad705c84bfd98d430aae419e2400dddc858149fmake the code compatible with old MOSART parameter fileeditcomponents/mosart/src/riverroute/RtmMod.F90editcomponents/mosart/src/cpl/rof_comp_mct.F90editcomponents/mosart/src/cpl/rof_comp_esmf.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90c0d5b815fdcf5a3d9d9eaa7b10660f434cc26c1e1604428622000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comThis is a rebased after cam->eam change The original branch is copied as the following branch: singhbalwinder/atm/remove-calcsize-diags-rbase1_copy1_09302020 Diags with one ommited aerosol (e.g. bc) is still NBFB. I am using the following user_nl_cam and rad_diag_3 is still NBFB: nhtfrq = -120 history_verbose = .true. history_budget = .true. history_clubb = .true. history_eddy = .true. history_waccm = .true. mode_defs = 'mam4_mode1:accum:=', 'A:num_a1:N:num_c1:num_mr:+', 'A:so4_a1:N:so4_c1:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:pom_a1:N:pom_c1:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a1:N:soa_c1:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:bc_a1:N:bc_c1:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:dst_a1:N:dst_c1:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a1:N:ncl_c1:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a1:N:mom_c1:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode1_no_bc:accum:=', 'A:num_a1:N:num_c1:num_mr:+', 'A:so4_a1:N:so4_c1:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:pom_a1:N:pom_c1:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a1:N:soa_c1:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+','A:dst_a1:N:dst_c1:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a1:N:ncl_c1:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a1:N:mom_c1:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode2:aitken:=', 'A:num_a2:N:num_c2:num_mr:+', 'A:so4_a2:N:so4_c2:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:soa_a2:N:soa_c2:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:ncl_a2:N:ncl_c2:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:mom_a2:N:mom_c2:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode3:coarse:=', 'A:num_a3:N:num_c3:num_mr:+', 'A:dst_a3:N:dst_c3:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a3:N:ncl_c3:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:so4_a3:N:so4_c3:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+', 'A:bc_a3:N:bc_c3:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:pom_a3:N:pom_c3:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a3:N:soa_c3:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:mom_a3:N:mom_c3:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode3_no_bc:coarse:=', 'A:num_a3:N:num_c3:num_mr:+', 'A:dst_a3:N:dst_c3:dust:/compyfs/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+', 'A:ncl_a3:N:ncl_c3:seasalt:/compyfs/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+', 'A:so4_a3:N:so4_c3:sulfate:/compyfs/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+','A:pom_a3:N:pom_c3:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:soa_a3:N:soa_c3:s-organic:/compyfs/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+', 'A:mom_a3:N:mom_c3:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc', 'mam4_mode4:primary_carbon:=', 'A:num_a4:N:num_c4:num_mr:+', 'A:pom_a4:N:pom_c4:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:bc_a4:N:bc_c4:black-c:/compyfs/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+', 'A:mom_a4:N:mom_c4:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' 'mam4_mode4_no_bc:primary_carbon:=', 'A:num_a4:N:num_c4:num_mr:+', 'A:pom_a4:N:pom_c4:p-organic:/compyfs/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+', 'A:mom_a4:N:mom_c4:m-organic:/compyfs/inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' rad_climate = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2', 'A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4', 'N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' rad_diag_1 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc','M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' rad_diag_2 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12' rad_diag_3 = 'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2','A:O3:O3', 'N:N2O:N2O', 'N:CH4:CH4','N:CFC11:CFC11', 'N:CFC12:CFC12', 'M:mam4_mode1_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc','M:mam4_mode2:/compyfs/inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc', 'M:mam4_mode3_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc', 'M:mam4_mode4_no_bc:/compyfs/inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' Reinstate accidently deleted MMF code and minor cleanup Fixes calcsize call args in crm/physpkg.F90 Minor additions for implementing ipair for diagnostic species it works at this point working but with wrong answers THe code works but with dgncur_a pointing to a dummy var. I have to figure out why is it. Here is the code change in calcsize.F90 (see the --> sign) !Set list_idx_local and other sanity checks list_idx_local = 0 if(present(list_idx_in)) then list_idx_local = list_idx_in if (.not. present(dgnumdry_m)) & call endrun('list_idx_in is present but dgnumdry_m pointer is missing'//errmsg(__FILE__,__LINE__)) !dgncur_a => dgnumdry_m(:,:,:) --> if(.not. associated(dgncur_a))allocate(dgncur_a( ... pcols,pver,ntot_amode)) else call pbuf_get_field(pbuf, dgnum_idx, dgncur_a) endif Seems to be working...now I am going to remove dbg statements... Removed all dbg statements, code is BFB with new calcsize Code is BF with branch singhbalwinder/eam/rrtmg_diag_bug_fix_only at commit ce31b2cdf52d26ff3d2b97c7098e786c876fee93 Replaced how we map ait<->acc species for transfer The simulation is BFB at this point [BFB] - Bit-For-Bit Simulation is BFB, performance didn't degrade I am going to start implemneting the refactor from here slowly to see where we see the performance hit and why not taking mapping refactor as it slows doen the simulation Refactor just move the code to a subroutine but it has a negative impact on model performance. the results are BFB Refactored ait<-->accum transfer rates codes Performace is not degraded and BFB Refactored some transfer codes and removed a do-loop with if conds broke a do-loop with if cond...still bfb and performance is ok replaced do-if logic with simple declarations, still BFB Performance also not impacted replaced another do-loop, still BFB refactors update tendency code in ait<->acc trnasfer Some more refactoring...still BFB and no impact on performance still BFB, some logic improvement for diagnostic calls removed another fldcw call, still BFB Still BFB, some cleanup and fixes for diagnostic calls 2020-11-03 10:37:02 -0800c0d5b815fdcf5a3d9d9eaa7b10660f434cc26c1eThis is a rebased after cam->eam changeeditcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F905f467b91b287a62e8f803514bc61d9c4cced1ea71604441013000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRebased:Default case is working wih diags and it is BFB 2020-11-03 14:03:33 -08005f467b91b287a62e8f803514bc61d9c4cced1ea7Rebased:Default case is working wih diags and it is BFBeditcomponents/eam/src/physics/cam/rad_constituents.F90editcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90cimecomponents/CMakeLists.txt6bad802a1bd674718c05cd75a61b274b1ad255651604446169000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govImprove timing feature 2020-11-03 16:29:29 -07006bad802a1bd674718c05cd75a61b274b1ad25565Improve timing featureeditcimeeditcomponents/CMakeLists.txtcomponents/clm/src/biogeochem/FatesBGCDynMod.F90_oldcomponents/clm/src/main/histFileMod.F90components/elm/src/main/histFileMod.F90components/clm/cime_config/config_component.xmlcomponents/elm/src/biogeochem/AllocationMod.F90components/clm/cime_config/config_compsets.xmlcomponents/clm/src/biogeochem/AllocationMod.F90components/elm/src/main/controlMod.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/src/main/controlMod.F90components/elm/src/main/restFileMod.F90components/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_compsets.xmlcomponents/elm/cime_config/config_component.xmlcomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/clm/src/main/restFileMod.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xmlfee53edfd79ef57bd70153297d2135e3b7ec88171604511569000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govPreparations for resolving merge between FATES nutrient branch and hash 45c7a29 2020-11-04 12:39:29 -0500fee53edfd79ef57bd70153297d2135e3b7ec8817Preparations for resolving merge between FATES nutrient branch and hash 45c7a29addcomponents/elm/src/main/restFileMod.F90addcomponents/elm/src/main/controlMod.F90deletecomponents/clm/src/biogeochem/FatesBGCDynMod.F90_oldaddcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmldeletecomponents/clm/src/main/histFileMod.F90addcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmldeletecomponents/clm/cime_config/config_compsets.xmldeletecomponents/clm/src/biogeochem/AllocationMod.F90addcomponents/elm/src/biogeochem/AllocationMod.F90deletecomponents/clm/cime_config/config_component.xmldeletecomponents/clm/src/main/restFileMod.F90addcomponents/elm/cime_config/config_compsets.xmladdcomponents/elm/src/main/histFileMod.F90deletecomponents/clm/bld/namelist_files/namelist_defaults_clm4_5.xmldeletecomponents/clm/src/main/controlMod.F90addcomponents/elm/cime_config/config_component.xmldeletecomponents/clm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xml855d3a4c8edb134141ea968eac24b6004bda3d6a1604512396000http://carson.math.uwm.edu/jenkins/user/bogenschutz1bogenschutz1bogenschutz1@llnlg.ovchange default settings for a thetal run 2020-11-04 09:53:16 -0800855d3a4c8edb134141ea968eac24b6004bda3d6achange default settings for a thetal runeditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcomponents/elm/bld/CLMBuildNamelist.pm077cf0ca92ae933aba917c95f5de8551443104111604513345000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govIncrementally rectifying conflicts with FATES-CLP and master through evaluating diffs 2020-11-04 13:09:05 -0500077cf0ca92ae933aba917c95f5de855144310411Incrementally rectifying conflicts with FATES-CLP and master through evaluating diffseditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/CLMBuildNamelist.pma0a3fa803a31597487d5e7a640bcd875ac48e80c1604513635000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between master and FATES-CNP 2020-11-04 13:13:55 -0500a0a3fa803a31597487d5e7a640bcd875ac48e80cconflict resolutions between master and FATES-CNPeditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmla99d9e1573ff7efc431cc7a814b73d9bdf96053b1604515833000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 13:50:33 -0500a99d9e1573ff7efc431cc7a814b73d9bdf96053bconflict resolutions between fates-cnp and mastereditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_component.xmld59c7feeb29301469f77e6996c7168b6971ad5a11604516620000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 14:03:40 -0500d59c7feeb29301469f77e6996c7168b6971ad5a1conflict resolutions between fates-cnp and mastereditcomponents/elm/cime_config/config_component.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml893a50dc52c1ca7ecdafd877fb8ac7f57ea881b41604516791000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 14:06:31 -0500893a50dc52c1ca7ecdafd877fb8ac7f57ea881b4conflict resolutions between fates-cnp and mastereditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/cime_config/config_compsets.xmlc82dd9c2a68213dedcc5f46ffa3c6e46697d461d1604520633000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:10:33 -0500c82dd9c2a68213dedcc5f46ffa3c6e46697d461dconflict resolutions between fates-cnp and mastereditcomponents/elm/cime_config/config_compsets.xmlcimecomponents/CMakeLists.txt38e1b908724014bd5742b80246abb0e6a737329d1604520970000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govRework timing so that it works with -jN 2020-11-04 13:16:10 -070038e1b908724014bd5742b80246abb0e6a737329dRework timing so that it works with -jNeditcomponents/CMakeLists.txteditcimecomponents/elm/src/main/clmfates_interfaceMod.F90components/elm/src/main/histFileMod.F909e925579644cbdfbcf88901d162391df9126590f1604521397000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:23:17 -05009e925579644cbdfbcf88901d162391df9126590fconflict resolutions between fates-cnp and mastereditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/clmfates_interfaceMod.F90components/elm/src/main/restFileMod.F908b17292a8d7db06d796bad7641a752fc27ee94851604521821000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govconflict resolutions between fates-cnp and master 2020-11-04 15:30:21 -05008b17292a8d7db06d796bad7641a752fc27ee9485conflict resolutions between fates-cnp and mastereditcomponents/elm/src/main/restFileMod.F90components/elm/src/external_models/fates51367e8dc73399eb34cc9b693ca6c68463c49f1e1604522307000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdating fates submodule pointer to api 14 2020-11-04 15:38:27 -050051367e8dc73399eb34cc9b693ca6c68463c49f1eupdating fates submodule pointer to api 14editcomponents/elm/src/external_models/fatescomponents/eam/src/physics/rrtmgp/cam_optics.F90components/eam/src/physics/crm/rrtmgp/radiation.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F905a91db2059cd6d493928fa24f1a9cc6ce0a6ae461604564165000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCleaned up clear_rh logic and fixed calcsize ifdef for modal_aero I tested using the following tests to ensure that model builds and produced BFB results: SMS_D_Ln5.ne4_ne4.FC5AV1C-L.compy_intel.eam-rrtmgp.C.clcsz_branch_code/ SMS_D.ne4pg2_ne4pg2.FC5AV1C-L.compy_intel.C.ait_accum_transfer__base... __ref_case_ait_acc_transfer/ SMS_D_Ln5.ne4pg2_ne4pg2.F-MMF1.compy_intel.C.clcsz_branch_code/ 2020-11-05 00:16:05 -08005a91db2059cd6d493928fa24f1a9cc6ce0a6ae46Cleaned up clear_rh logic and fixed calcsize ifdef for modal_aeroeditcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/rrtmgp/cam_optics.F90editcomponents/eam/src/physics/crm/rrtmgp/radiation.F90editcomponents/eam/src/physics/crm/physpkg.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90e1c098ed5987330bd9f568b923e81dbd7041f79f1604566048000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comBug fix for prescribed aerosols Thanks to Andrew Bradley for finding this bug (memory leak) 2020-11-05 00:47:28 -0800e1c098ed5987330bd9f568b923e81dbd7041f79fBug fix for prescribed aerosolseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F904103fd02e5795ae3d45e37b793eb804c9c3e29401604568230000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved some unused vars and use rad_cnst sigma 2020-11-05 01:23:50 -08004103fd02e5795ae3d45e37b793eb804c9c3e2940Removed some unused vars and use rad_cnst sigmaeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F904b589b1267afa06e8fafd01fa6b6f382fca0c7c81604571140000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comEverything still BFB, changes related to dgnum and voltonumb 2020-11-05 02:12:20 -08004b589b1267afa06e8fafd01fa6b6f382fca0c7c8Everything still BFB, changes related to dgnum and voltonumbeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90a85ed9eedee417604ac63237a2a22b61b04be2401604573527000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comstill BFB, some cleanup 2020-11-05 02:52:07 -0800a85ed9eedee417604ac63237a2a22b61b04be240still BFB, some cleanupeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/mpas-source60b59353daaabd1d8edb51d63d9d8578923a3e731604606256000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govCOMPASS only, New Mesh: EC15to60E2r4 2020-11-05 11:57:36 -080060b59353daaabd1d8edb51d63d9d8578923a3e73COMPASS only, New Mesh: EC15to60E2r4editcomponents/mpas-sourcecimecomponents/CMakeLists.txtdff340490f5b6962966167faa85754ebc39a77fa1604610207000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime and improve time format 2020-11-05 14:03:27 -0700dff340490f5b6962966167faa85754ebc39a77faUpdate cime and improve time formateditcimeeditcomponents/CMakeLists.txtcomponents/homme/src/share/prim_driver_base.F90b75c31fb2863ded32000d1dd06581e42541984ff1604623107000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govtemporary refactor of the proper way q advection should be done, refactor on way 2020-11-05 16:38:27 -0800b75c31fb2863ded32000d1dd06581e42541984fftemporary refactor of the proper way q advection should be done, refactor on wayeditcomponents/homme/src/share/prim_driver_base.F90components/cmake/build_model.cmakece03b104cc33e9c96ca003c7743040565a6e7a281604625870000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing build for mmfxx test 2020-11-05 19:24:30 -0600ce03b104cc33e9c96ca003c7743040565a6e7a28fixing build for mmfxx testeditcomponents/cmake/build_model.cmakecomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/cam/subcol_SILHS.F9014d2b06c15f43fb43b385e621a7b176268c08f971604626581000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating clubb_intr.F90, clubb_api_module, and subcol_SILHS.F90 to commit changes that add sponge damping in the top 6 levels on wp2 and wp3, use a better calculation of rho_zm, and place on upper limit on sample point values of hydrometeor mixing ratios. 2020-11-05 19:36:21 -060014d2b06c15f43fb43b385e621a7b176268c08f97I am updating clubb_intr.F90, clubb_api_module, and subcol_SILHS.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90a188b08f42566cae8983c90ae8bba1ea3f31d1e51604630214000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comReworked logic for calcsize_diag, still BFB 2020-11-05 18:36:54 -0800a188b08f42566cae8983c90ae8bba1ea3f31d1e5Reworked logic for calcsize_diag, still BFBeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F90247c4b5f62b73abd8573e45313050978d09623ae1604681873000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comminor cleanup, bfb 2020-11-06 08:57:53 -0800247c4b5f62b73abd8573e45313050978d09623aeminor cleanup, bfbeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commands83afe1925913c66b2b8876fdcc8b07f6d24d97a21604684852000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comkeep *elm-bgcexptests with preqx 2020-11-06 11:47:32 -060083afe1925913c66b2b8876fdcc8b07f6d24d97a2keep *elm-bgcexptests with preqxeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/scm/shell_commandscime_config/tests.py5c7b85280360efb5f04388bc63738446c8662f541604686564000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.commake scm test use preqx 2020-11-06 12:16:04 -06005c7b85280360efb5f04388bc63738446c8662f54make scm test use preqxaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/scm/shell_commandseditcime_config/tests.pycomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90228b8707d9864bc754c16d0dd66c17d73c9c8e771604698921000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comcleaned up update_mmr logic at some places and removed some pointers 2020-11-06 13:42:01 -0800228b8707d9864bc754c16d0dd66c17d73c9c8e77cleaned up update_mmr logic at some places and removed some pointerseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F908df35c1825f72847a5546f867a990e2b6bafa9711604702909000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comCleaned up update_mmr logic 2020-11-06 14:48:29 -08008df35c1825f72847a5546f867a990e2b6bafa971Cleaned up update_mmr logiceditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cimecomponents/CMakeLists.txt7ea878121a3a21afa885bf1bd2ee0e538e488fbc1604705284000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAlways turn on our wrapper 2020-11-06 16:28:04 -07007ea878121a3a21afa885bf1bd2ee0e538e488fbcAlways turn on our wrappereditcimeeditcomponents/CMakeLists.txtcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90b25d6514877abb748ff572dbc5a53fc9f625a47d1604735093000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes build a build error 2020-11-06 23:44:53 -0800b25d6514877abb748ff572dbc5a53fc9f625a47dFixes build a build erroreditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/homme/src/share/prim_driver_base.F900489760e74aa62805a17210d8f99981797a15f4c1604957832000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@syrah144.llnl.govalternate way to do vertical advection 2020-11-09 13:37:12 -08000489760e74aa62805a17210d8f99981797a15f4calternate way to do vertical advectioneditcomponents/homme/src/share/prim_driver_base.F90components/elm/bld/CLMBuildNamelist.pm96d17c4271a4e6ad26379dc27cd5d3f4123593eb1604964442000http://carson.math.uwm.edu/jenkins/user/tian.zhoutian.zhoutian.zhou@pnnl.govbuild namelist fix 2020-11-09 15:27:22 -080096d17c4271a4e6ad26379dc27cd5d3f4123593ebbuild namelist fixeditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/homme/src/share/prim_driver_base.F90f7a2cc989008a40486a683893901d365bf22db1f1604969098000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govrefactor how the theta-l dycore handles the vertical advection to be more consistent 2020-11-09 16:44:58 -0800f7a2cc989008a40486a683893901d365bf22db1frefactor how the theta-l dycore handles the vertical advection to be more consistenteditcomponents/homme/src/share/prim_driver_base.F90components/eam/src/control/forecast.F90components/eam/src/control/cam_comp.F90components/homme/src/share/prim_driver_base.F90components/eam/src/dynamics/se/se_single_column_mod.F9077f89d77d2b1f2167118266a61c5e86316df1d831604970122000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govupdate comments and SE improvements 2020-11-09 17:02:02 -080077f89d77d2b1f2167118266a61c5e86316df1d83update comments and SE improvementseditcomponents/eam/src/control/forecast.F90editcomponents/eam/src/control/cam_comp.F90editcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90components/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/cmake/HommeMacros.cmake40822551770b866bdf1d190961a6345d574a750a1605054209000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHomme: cmake fixes for library targets 2020-11-10 17:23:29 -070040822551770b866bdf1d190961a6345d574a750aHomme: cmake fixes for library targetseditcomponents/homme/src/theta-l_kokkos/CMakeLists.txteditcomponents/homme/cmake/HommeMacros.cmakecomponents/homme/src/share/prim_driver_base.F906f3d3b1dff6fe39ef713760ff2730583fe8e67eb1605129745000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz764.llnl.govbug fix for update_T logical 2020-11-11 13:22:25 -08006f3d3b1dff6fe39ef713760ff2730583fe8e67ebbug fix for update_T logicaleditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F9006655b8d87586a1b8e15d0abedcb3aee92e62df51605131681000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz764.llnl.govfix some spacing issues 2020-11-11 13:54:41 -080006655b8d87586a1b8e15d0abedcb3aee92e62df5fix some spacing issueseditcomponents/homme/src/share/prim_driver_base.F90components/elm/src/main/elm_varctl.F90components/elm/src/utils/elm_varorb.F90components/elm/src/main/clmfates_paraminterfaceMod.F90components/elm/src/cpl/elm_cpl_indices.F90components/elm/src/main/elm_varsur.F90components/elm/src/main/clm_finalizeMod.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/clm_driver.F90components/elm/src/main/elm_finalizeMod.F90components/elm/src/main/clm_varsur.F90components/elm/src/main/clm_interface_bgcType.F90components/elm/src/main/clm_interface_dataType.F90components/elm/src/main/clm_varctl.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/cpl/clm_cpl_indices.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/utils/clm_time_manager.F90components/elm/src/main/elm_varpar.F90components/elm/src/main/elm_driver.F90components/elm/src/utils/clm_nlUtilsMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/utils/clm_varorb.F90components/elm/src/main/elm_interface_bgcType.F90components/elm/src/main/clmfates_interfaceMod.F90components/elm/src/main/clm_initializeMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/clm_varpar.F90components/elm/src/main/clm_varcon.F90components/elm/src/utils/elm_nlUtilsMod.F90components/elm/src/main/elm_varcon.F90components/elm/src/main/clm_interface_pflotranMod.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/clm_instMod.F90components/elm/src/main/elmfates_paraminterfaceMod.F90components/elm/src/main/clm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/main/clm_interface_thType.F9061d85dea6aa974d521faa8c8e13c8bfddc7275d11605150976000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames files 2020-11-11 19:16:16 -080061d85dea6aa974d521faa8c8e13c8bfddc7275d1Renames filesdeletecomponents/elm/src/main/clm_interface_dataType.F90deletecomponents/elm/src/main/clm_instMod.F90deletecomponents/elm/src/main/clmfates_interfaceMod.F90addcomponents/elm/src/main/elmfates_paraminterfaceMod.F90addcomponents/elm/src/utils/elm_time_manager.F90deletecomponents/elm/src/utils/clm_time_manager.F90deletecomponents/elm/src/main/clm_varpar.F90addcomponents/elm/src/main/elm_finalizeMod.F90deletecomponents/elm/src/main/clm_varctl.F90deletecomponents/elm/src/main/clm_interface_funcsMod.F90addcomponents/elm/src/main/elm_interface_dataType.F90deletecomponents/elm/src/main/clm_varsur.F90addcomponents/elm/src/main/elm_varsur.F90deletecomponents/elm/src/main/clm_driver.F90addcomponents/elm/src/main/elmfates_interfaceMod.F90deletecomponents/elm/src/cpl/clm_cpl_indices.F90addcomponents/elm/src/main/elm_driver.F90addcomponents/elm/src/main/elm_interface_thType.F90addcomponents/elm/src/main/elm_varctl.F90deletecomponents/elm/src/main/clmfates_paraminterfaceMod.F90deletecomponents/elm/src/main/clm_varcon.F90addcomponents/elm/src/main/elm_instMod.F90deletecomponents/elm/src/main/clm_interface_bgcType.F90addcomponents/elm/src/utils/elm_varorb.F90deletecomponents/elm/src/main/clm_interface_thType.F90addcomponents/elm/src/main/elm_initializeMod.F90deletecomponents/elm/src/main/clm_finalizeMod.F90addcomponents/elm/src/utils/elm_nlUtilsMod.F90deletecomponents/elm/src/utils/clm_varorb.F90addcomponents/elm/src/main/elm_interface_funcsMod.F90addcomponents/elm/src/main/elm_varpar.F90addcomponents/elm/src/main/elm_interface_pflotranMod.F90deletecomponents/elm/src/main/clm_initializeMod.F90deletecomponents/elm/src/main/clm_interface_pflotranMod.F90deletecomponents/elm/src/utils/clm_nlUtilsMod.F90addcomponents/elm/src/main/elm_varcon.F90addcomponents/elm/src/cpl/elm_cpl_indices.F90addcomponents/elm/src/main/elm_interface_bgcType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/elm_driver.F9044ffcece0e9f52077644fb5c820fbe47432e2ab41605151127000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_drv to elm_drv 2020-11-11 19:18:47 -080044ffcece0e9f52077644fb5c820fbe47432e2ab4Renames clm_drv to elm_drveditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_driver.F901d61aed69eee88daeaa0e48e17fcc08ddda7ae2d1605151505000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames private subroutines 2020-11-11 19:25:05 -08001d61aed69eee88daeaa0e48e17fcc08ddda7ae2dRenames private subroutineseditcomponents/elm/src/main/elm_driver.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/elm_finalizeMod.F90c606e2078d0f36f61d5b6fab1c9df83241ecbc171605151589000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_finializedMod to elm_finializedMod 2020-11-11 19:26:29 -0800c606e2078d0f36f61d5b6fab1c9df83241ecbc17Renames clm_finializedMod to elm_finializedModeditcomponents/elm/src/main/elm_finalizeMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeophys/BalanceCheckMod.F90ea69c566e0a80c058759aa8e9bf82bee3cbb5a351605151614000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_initializeMod to elm_initializeMod 2020-11-11 19:26:54 -0800ea69c566e0a80c058759aa8e9bf82bee3cbb5a35Renames clm_initializeMod to elm_initializeModeditcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CMakeLists.txtcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90components/elm/src/main/elm_driver.F90components/elm/src/external_models/emi/src/demo/demo.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F9042cad2b2592c2ff227571e1cfef101dea6eb3f751605151652000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_instMod to elm_instMod 2020-11-11 19:27:32 -080042cad2b2592c2ff227571e1cfef101dea6eb3f75Renames clm_instMod to elm_instModeditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CMakeLists.txteditcomponents/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90editcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90editcomponents/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_bgcType.F90aae6cb7f9974d346b2f161f8193afdb5f01fb5381605151680000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_bgcType to elm_interface_bgcType 2020-11-11 19:28:00 -0800aae6cb7f9974d346b2f161f8193afdb5f01fb538Renames clm_interface_bgcType to elm_interface_bgcTypeeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_bgcType.F90editcomponents/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_dataType.F9051f1553523a0be69eb714791b1d19d213c4f68421605151716000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_th_datatype to elm_interface_th_datatype 2020-11-11 19:28:36 -080051f1553523a0be69eb714791b1d19d213c4f6842Renames clm_interface_th_datatype to elm_interface_th_datatypeeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F90b0e4e0cda5906cd71e7c9fd2c7fb58f3253901201605151755000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_thType to elm_interface_thType 2020-11-11 19:29:15 -0800b0e4e0cda5906cd71e7c9fd2c7fb58f325390120Renames clm_interface_thType to elm_interface_thTypeeditcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_instMod.F9014fe0515f278a16522be13b05d2442b8f10612511605151771000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_dataType to elm_interface_dataType 2020-11-11 19:29:31 -080014fe0515f278a16522be13b05d2442b8f1061251Renames clm_interface_dataType to elm_interface_dataTypeeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_instMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F9089a6ef7278be4204d3f3fae0557393642dc47a671605151795000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_data_type to elm_interface_data_type 2020-11-11 19:29:55 -080089a6ef7278be4204d3f3fae0557393642dc47a67Renames clm_interface_data_type to elm_interface_data_typeeditcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/external_models/emi/src/demo/demo.F901de8980133d7174d64a01941de5f6b81d9d3b7201605151927000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_inst_biogeochem/biogeophys to elm_inst_biogeochem/biogeophys 2020-11-11 19:32:07 -08001de8980133d7174d64a01941de5f6b81d9d3b720Renames clm_inst_biogeochem/biogeophys to elm_inst_biogeochem/biogeophyseditcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/clm_instMod.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_instMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/main/elm_driver.F90components/elm/src/external_models/emi/src/elm_stub/elm_subgrid_types/ColumnDataType.F9085346756955d31f70aba944bda33ff2e113dc77e1605152081000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_interface_funcsMod to elm_interface_funcsMod 2020-11-11 19:34:41 -080085346756955d31f70aba944bda33ff2e113dc77eRenames clm_interface_funcsMod to elm_interface_funcsModeditcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/elm_subgrid_types/ColumnDataType.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F905ca899e101f120ddaf4c1ebe2b464bf199dd338d1605152395000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames get_clm to get_elm 2020-11-11 19:39:55 -08005ca899e101f120ddaf4c1ebe2b464bf199dd338dRenames get_clm to get_elmeditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90bb8e45a585a954b48b9596219d489e4c816c11f11605152784000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_bgc to elm_bgc 2020-11-11 19:46:24 -0800bb8e45a585a954b48b9596219d489e4c816c11f1Renames clm_bgc to elm_bgceditcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90678f24e8061096079f47a7d246aaeb215270549b1605152967000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_pf_idata, clm_bgc_data, clm_idata to elm_pf_idata, elm_bgc_data, elm_idata 2020-11-11 19:49:27 -0800678f24e8061096079f47a7d246aaeb215270549bRenames clm_pf_idata, clm_bgc_data, clm_idata to elm_pf_idata, elm_bgc_data, elm_idataeditcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/PhosphorusStateType.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeochem/VOCEmissionMod.F90components/elm/src/biogeophys/TemperatureType.F90components/elm/src/main/controlMod.F90components/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/pftvarcon.F90components/elm/src/main/elm_driver.F90components/elm/src/biogeochem/DecompCascadeCNMod.F90components/elm/src/biogeophys/QSatMod.F90components/elm/src/biogeophys/BareGroundFluxesMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90components/elm/src/biogeochem/AnnualUpdateMod.F90components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/WaterBudgetMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/main/elm_varcon.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/biogeophys/SoilTemperatureMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/main/initVerticalMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90components/elm/src/main/PatchMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/data_types/TopounitType.F90components/elm/src/external_models/emi/src/demo/demo.F90components/elm/src/biogeochem/CropType.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeochem/CNNitrogenStateType.F90components/elm/src/biogeochem/CropMod.F90components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90components/elm/src/external_models/sbetrcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/initInterp.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/main/elm_interface_dataType.F90components/elm/src/biogeochem/C14DecayMod.F90components/elm/src/biogeophys/LakeTemperatureMod.F90components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/data_types/VegetationType.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/subgridAveMod.F90components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90components/elm/src/main/decompMod.F90components/elm/src/biogeochem/ErosionMod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/organicFileMod.F90components/elm/src/data_types/TopounitDataType.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeophys/LakeStateType.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/ComputeSeedMod.F90components/elm/src/main/decompInitMod.F90components/elm/src/biogeochem/CNPhenologyBeTRMod.F90components/elm/src/data_types/ColumnType.F90components/elm/src/biogeophys/SoilStateType.F90components/elm/src/biogeochem/SoilLittVertTranspMod.F90components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90components/elm/src/biogeochem/GapMortalityMod.F90components/elm/src/biogeochem/PhenologyMod.F90components/elm/src/biogeochem/NitrifDenitrifMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/main/ColumnMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/biogeochem/CNAllocationBetrMod.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/ActiveLayerMod.F90components/elm/src/biogeochem/DUSTMod.F90components/elm/src/data_types/GridcellType.F90components/elm/src/biogeophys/SoilWaterMovementMod.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/biogeophys/AerosolType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/restFileMod.F90components/elm/src/data_types/LandunitDataType.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/dyn_subgrid/dynHarvestMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/main/histFileMod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/main/lnd2atmType.F90components/elm/src/main/atm2lndMod.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/utils/restUtilMod.F90.incomponents/elm/src/data_types/LandunitType.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/main/elm_interface_thType.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/biogeochem/FireMod.F90components/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/main/atm2lndType.F90components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90components/elm/src/biogeophys/TotalWaterAndHeatMod.F90components/elm/src/main/glcDiagnosticsMod.F90components/elm/src/biogeophys/SedYieldMod.F90components/elm/src/biogeophys/SedFluxType.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/biogeophys/WaterfluxType.F90components/elm/src/main/accumulMod.F90components/elm/src/data_types/GridcellDataType.F90components/elm/src/biogeochem/DecompCascadeBGCMod.F90components/elm/src/biogeophys/SoilMoistStressMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/elm_interface_bgcType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/utils/accumulMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SurfaceResistanceMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/utils/spmdGathScatMod.F90components/elm/src/biogeophys/SoilFluxesMod.F90components/elm/src/main/LandunitMod.F9078dc0c61b3c5aa08f6f64b5bad8273b227e0a27b1605153173000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varcon to elm_varcon 2020-11-11 19:52:53 -080078dc0c61b3c5aa08f6f64b5bad8273b227e0a27bRenames clm_varcon to elm_varconeditcomponents/elm/src/biogeophys/SolarAbsorbedType.F90editcomponents/elm/src/biogeophys/TotalWaterAndHeatMod.F90editcomponents/elm/src/data_types/GridcellType.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/data_types/LandunitType.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/dyn_subgrid/dynLandunitAreaMod.F90editcomponents/elm/src/main/decompInitMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/main/GetGlobalValuesMod.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/biogeophys/LakeStateType.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/biogeophys/SoilMoistStressMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/main/ColumnMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/biogeochem/VOCEmissionMod.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/main/glcDiagnosticsMod.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90editcomponents/elm/src/main/accumulMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/biogeochem/DUSTMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/utils/restUtilMod.F90.ineditcomponents/elm/src/data_types/ColumnType.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/main/elm_interface_bgcType.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/biogeophys/LakeFluxesMod.F90editcomponents/elm/src/biogeophys/QSatMod.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/external_models/emi/src/demo/demo.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/dyn_subgrid/dynHarvestMod.F90editcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/dyn_subgrid/dynColumnTemplateMod.F90editcomponents/elm/src/main/pftvarcon.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/biogeophys/SedFluxType.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeochem/ComputeSeedMod.F90editcomponents/elm/src/main/organicFileMod.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/biogeochem/DecompCascadeBGCMod.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/data_types/VegetationType.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/utils/accumulMod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/biogeophys/SoilFluxesMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/data_types/LandunitDataType.F90editcomponents/elm/src/main/decompMod.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/main/PatchMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90editcomponents/elm/src/main/LandunitMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeochem/PhosphorusStateType.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/biogeophys/SurfaceResistanceMod.F90editcomponents/elm/src/biogeochem/PhenologyMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/external_models/sbetreditcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/data_types/TopounitType.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/biogeophys/LakeTemperatureMod.F90editcomponents/elm/src/biogeochem/AnnualUpdateMod.F90editcomponents/elm/src/biogeochem/CropMod.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/biogeophys/TemperatureType.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/PhosphorusStateType.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/biogeophys/TemperatureType.F90components/elm/src/biogeochem/VOCEmissionMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90components/elm/src/main/controlMod.F90components/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/biogeophys/AerosolMod.F90components/elm/src/biogeochem/ChemStateType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/pftvarcon.F90components/elm/src/biogeochem/DecompCascadeCNMod.F90components/elm/src/main/elm_driver.F90components/elm/src/biogeochem/CarbonIsoFluxMod.F90components/elm/src/biogeophys/BareGroundFluxesMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90components/elm/src/data_types/VegetationPropertiesType.F90components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/WaterBudgetMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/main/soilorder_varcon.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90components/elm/src/main/elm_varcon.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/SoilTemperatureMod.F90components/elm/src/main/initVerticalMod.F90components/elm/src/main/elm_instMod.F90compo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ts/elm/src/main/subgridRestMod.F90components/elm/src/main/elm_varpar.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/main/column_varcon.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90components/elm/src/main/elm_interface_bgcType.F90components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeochem/PlantMicKineticsMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/biogeophys/SoilFluxesMod.F903ca8d6cbf82a61d9218c3c04674ca1ed1b7704411605157595000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varpar to elm_varpar 2020-11-11 21:06:35 -08003ca8d6cbf82a61d9218c3c04674ca1ed1b770441Renames clm_varpar to elm_varpareditcomponents/elm/src/data_types/TopounitType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/biogeochem/RootDynamicsMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/main/subgridMod.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/biogeochem/DUSTMod.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/biogeochem/MaintenanceRespMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/biogeochem/CNEcosystemDynBetrMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/biogeophys/TemperatureType.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate2Mod.F90editcomponents/elm/src/biogeochem/ChemStateType.F90editcomponents/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/dyn_subgrid/dynHarvestMod.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90editcomponents/elm/src/main/soilorder_varcon.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/biogeophys/LakeTemperatureMod.F90editcomponents/elm/src/biogeochem/PrecisionControlMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateType.F90editcomponents/elm/src/data_types/VegetationPropertiesType.F90editcomponents/elm/src/main/elm_interface_bgcType.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/main/elm_interface_dataType.F90editcomponents/elm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90editcomponents/elm/src/main/SoilorderConType.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/biogeophys/SolarAbsorbedType.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/biogeochem/CarbonIsoFluxMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/LakeStateType.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate3Mod.F90editcomponents/elm/src/main/elm_varpar.F90editcomponents/elm/src/biogeochem/VOCEmissionMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/PlantMicKineticsMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeochem/DecompCascadeBGCMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90editcomponents/elm/src/external_models/sbetreditcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/biogeochem/CNDecompCascadeConType.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/main/column_varcon.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/data_types/ColumnType.F90editcomponents/elm/src/data_types/LandunitDataType.F90editcomponents/elm/src/biogeophys/LakeFluxesMod.F90editcomponents/elm/src/biogeophys/TotalWaterAndHeatMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/main/ColumnMod.F90editcomponents/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/main/elm_interface_thType.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90editcomponents/elm/src/main/pftvarcon.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeophys/SoilFluxesMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/biogeophys/AerosolMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90editcomponents/elm/src/biogeochem/PhenologyMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/biogeophys/TemperatureType.F90components/elm/src/main/controlMod.F90components/elm/src/biogeochem/NitrogenDynamicsMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/main/elm_driver.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/WaterBudgetMod.F90components/elm/src/main/soilorder_varcon.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/main/initVerticalMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90components/elm/src/external_models/sbetrcomponents/elm/src/biogeophys/TridiagonalMod.F90components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/utils/domainLateralMod.F90components/elm/src/biogeophys/RootBiophysMod.F90components/elm/src/main/initInterp.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90components/elm/src/biogeochem/C14DecayMod.F90components/elm/src/biogeophys/LakeTemperatureMod.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/biogeochem/CropHarvestPoolsMod.F90components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90components/elm/src/main/subgridAveMod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/data_types/TopounitDataType.F90components/elm/src/biogeophys/LakeStateType.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90components/elm/src/biogeochem/ComputeSeedMod.F90components/elm/src/main/decompInitMod.F90components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90components/elm/src/biogeochem/CNPhenologyBeTRMod.F90components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90components/elm/src/biogeochem/SoilLittVertTranspMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90components/elm/src/biogeochem/NitrifDenitrifMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/ActiveLayerMod.F90components/elm/src/biogeophys/SoilWaterMovementMod.F90components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90components/elm/src/biogeophys/AerosolType.F90components/elm/src/utils/domainMod.F90components/elm/src/main/abortutils.F90components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/utils/fileutils.F90components/elm/src/data_types/LandunitDataType.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/main/subgridMod.F90components/elm/src/main/histFileMod.F90components/elm/src/main/lnd2atmType.F90components/elm/src/main/atm2lndMod.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/utils/restUtilMod.F90.incomponents/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/main/elmfates_paraminterfaceMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/glcDiagnosticsMod.F90components/elm/src/biogeophys/SedFluxType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90components/elm/src/biogeophys/WaterfluxType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90components/elm/src/data_types/GridcellDataType.F90components/elm/src/biogeochem/PrecisionControlMod.F90components/elm/src/main/filterMod.F90components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90components/elm/src/biogeophys/LakeHydrologyMod.F90components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90components/elm/src/biogeophys/BandDiagonalMod.F90components/elm/src/main/lnd2atmMod.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/SolarAbsorbedType.F90components/elm/src/biogeophys/SoilFluxesMod.F90components/elm/src/biogeochem/PhosphorusStateType.F90components/elm/src/utils/quadraticMod.F90components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeochem/VOCEmissionMod.F90components/elm/src/main/elm_finalizeMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90components/elm/src/biogeochem/CH4varcon.F90components/elm/src/main/pftvarcon.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90components/elm/src/biogeochem/DecompCascadeCNMod.F90components/elm/src/biogeophys/BareGroundFluxesMod.F90components/elm/src/dyn_subgrid/dynTimeInfoMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90components/elm/src/data_types/VegetationPropertiesType.F90components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/MEGANFactorsMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90components/elm/src/data_types/VegetationDataType.F90components/elm/src/biogeophys/SoilTemperatureMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/biogeochem/PhenologyFluxLimitMod.F90components/elm/src/biogeochem/CropType.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeochem/CNNitrogenStateType.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/VegStructUpdateMod.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/biogeochem/RootDynamicsMod.F90components/elm/src/biogeophys/LakeCon.F90components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90components/elm/src/data_types/VegetationType.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/decompMod.F90components/elm/src/biogeochem/ErosionMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/organicFileMod.F90components/elm/src/main/readParamsMod.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeophys/SoilStateType.F90components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90components/elm/src/biogeochem/PhenologyMod.F90components/elm/src/biogeochem/GapMortalityMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/src/biogeochem/CNAllocationBetrMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/biogeochem/DUSTMod.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/main/restFileMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/dyn_subgrid/dynHarvestMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/main/atm2lndType.F90components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90components/elm/src/biogeochem/WoodProductsMod.F90components/elm/src/cpl/elm_cpl_indices.F90components/elm/src/biogeophys/SedYieldMod.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/main/accumulMod.F90components/elm/src/biogeochem/DecompCascadeBGCMod.F90components/elm/src/biogeophys/SoilMoistStressMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/main/elm_varpar.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90components/elm/src/biogeochem/LSparseMatMod.F90components/elm/src/dyn_subgrid/dynVarMod.F90.incomponents/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90components/elm/src/biogeophys/PhotosynthesisType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeophys/LakeFluxesMod.F90components/elm/src/utils/accumulMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90components/elm/src/biogeophys/SurfaceResistanceMod.F90components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90components/elm/src/utils/spmdGathScatMod.F902069f52d96e5fb21caf25c6b1237e2401409a4c11605159680000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varctl to elm_varctl 2020-11-11 21:41:20 -08002069f52d96e5fb21caf25c6b1237e2401409a4c1Renames clm_varctl to elm_varctleditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/biogeochem/PhosphorusStateType.F90editcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90editcomponents/elm/src/utils/domainLateralMod.F90editcomponents/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate2Mod.F90editcomponents/elm/src/main/pftvarcon.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/main/glcDiagnosticsMod.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90editcomponents/elm/src/data_types/VegetationType.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/main/soilorder_varcon.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeochem/CNNitrogenStateType.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/dyn_subgrid/dynLandunitAreaMod.F90editcomponents/elm/src/biogeochem/PhenologyMod.F90editcomponents/elm/src/main/readParamsMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisType.F90editcomponents/elm/src/biogeochem/CNAllocationBetrMod.F90editcomponents/elm/src/biogeochem/DecompCascadeBGCMod.F90editcomponents/elm/src/main/abortutils.F90editcomponents/elm/src/main/elm_finalizeMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/dyn_subgrid/dynTimeInfoMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90editcomponents/elm/src/main/accumulMod.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/biogeochem/WoodProductsMod.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/biogeochem/C14DecayMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/data_types/VegetationDataType.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/utils/domainMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/src/biogeophys/SedFluxType.F90editcomponents/elm/src/biogeophys/SoilWaterMovementMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90editcomponents/elm/src/biogeochem/NitrifDenitrifMod.F90editcomponents/elm/src/biogeochem/PhenologyFluxLimitMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridDriverMod.F90editcomponents/elm/src/external_models/sbetreditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/dyn_subgrid/dynVarMod.F90.ineditcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90editcomponents/elm/src/biogeophys/LakeTemperatureMod.F90editcomponents/elm/src/biogeophys/LakeFluxesMod.F90editcomponents/elm/src/utils/accumulMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/biogeophys/SurfaceResistanceMod.F90editcomponents/elm/src/biogeochem/SoilLittVertTranspMod.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/cpl/elm_cpl_indices.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/biogeochem/EcosystemBalanceCheckMod.F90editcomponents/elm/src/biogeochem/VOCEmissionMod.F90editcomponents/elm/src/biogeophys/TemperatureType.F90editcomponents/elm/src/biogeophys/BareGroundFluxesMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate1Mod.F90editcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/lnd2atmType.F90editcomponents/elm/src/biogeophys/RootBiophysMod.F90editcomponents/elm/src/biogeophys/WaterfluxType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/main/decompMod.F90editcomponents/elm/src/utils/fileutils.F90editcomponents/elm/src/biogeochem/ComputeSeedMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90editcomponents/elm/src/main/atm2lndType.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/filterMod.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/biogeochem/MEGANFactorsMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/biogeophys/LakeStateType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90editcomponents/elm/src/data_types/LandunitDataType.F90editcomponents/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/biogeophys/SoilMoistStressMod.F90editcomponents/elm/src/biogeophys/TridiagonalMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90editcomponents/elm/src/data_types/GridcellDataType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/biogeochem/RootDynamicsMod.F90editcomponents/elm/src/biogeochem/ErosionMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90editcomponents/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90editcomponents/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90editcomponents/elm/src/biogeochem/CropHarvestPoolsMod.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/biogeochem/VegStructUpdateMod.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/biogeophys/WaterBudgetMod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90editcomponents/elm/src/biogeophys/SoilTemperatureMod.F90editcomponents/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90editcomponents/elm/src/biogeophys/SedYieldMod.F90editcomponents/elm/src/main/GetGlobalValuesMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/biogeochem/CNGapMortalityBeTRMod.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90editcomponents/elm/src/main/atm2lndMod.F90editcomponents/elm/src/biogeochem/LSparseMatMod.F90editcomponents/elm/src/biogeophys/AerosolType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/biogeochem/VerticalProfileMod.F90editcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/src/biogeochem/CarbonStateUpdate3Mod.F90editcomponents/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90editcomponents/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90editcomponents/elm/src/biogeophys/LakeCon.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/subgridMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/biogeophys/SoilFluxesMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/main/elmfates_paraminterfaceMod.F90editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/biogeochem/CNPhenologyBeTRMod.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeophys/LakeHydrologyMod.F90editcomponents/elm/src/biogeophys/BandDiagonalMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90editcomponents/elm/src/main/organicFileMod.F90editcomponents/elm/src/biogeochem/GapMortalityMod.F90editcomponents/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90editcomponents/elm/src/main/decompInitMod.F90editcomponents/elm/src/utils/quadraticMod.F90editcomponents/elm/src/biogeochem/NitrogenDynamicsMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90editcomponents/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90editcomponents/elm/src/data_types/TopounitDataType.F90editcomponents/elm/src/biogeochem/CH4varcon.F90editcomponents/elm/src/biogeochem/PrecisionControlMod.F90editcomponents/elm/src/dyn_subgrid/dynHarvestMod.F90editcomponents/elm/src/main/initVerticalMod.F90editcomponents/elm/src/biogeochem/DecompCascadeCNMod.F90editcomponents/elm/src/data_types/VegetationPropertiesType.F90editcomponents/elm/src/utils/restUtilMod.F90.ineditcomponents/elm/src/main/elm_varpar.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/biogeophys/SolarAbsorbedType.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/biogeochem/CNEcosystemDynBetrMod.F90editcomponents/elm/src/biogeochem/DUSTMod.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/subgridMod.F90components/elm/.DS_Storecomponents/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_varsur.F90components/elm/src/main/CMakeLists.txtcomponents/elm/src/main/initGridCellsMod.F90components/elm/src/utils/domainMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/CanopyHydrologyMod.F905032ede5299e9e9b318f8804505ade0177ba90731605159908000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varsur to elm_varsur 2020-11-11 21:45:08 -08005032ede5299e9e9b318f8804505ade0177ba9073Renames clm_varsur to elm_varsureditcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/main/CMakeLists.txteditcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/main/subgridMod.F90addcomponents/elm/.DS_Storeeditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/utils/domainMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/main/elm_varsur.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/restFileMod.F90components/elm/src/dyn_subgrid/dynSubgridControlMod.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/utils/elm_nlUtilsMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeochem/FireMod.F9045d8a4aaec250e2714e60e68a74841fd139c57981605160014000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_nlUtilsMod to elm_nlUtilsMod 2020-11-11 21:46:54 -080045d8a4aaec250e2714e60e68a74841fd139c5798Renames clm_nlUtilsMod to elm_nlUtilsModeditcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/dyn_subgrid/dynSubgridControlMod.F90editcomponents/elm/src/utils/elm_nlUtilsMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90ee41352cf827962ad7c5f46bd4c9441bd878c1031605160035000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames vic_clm_fract to vic_elm_fract 2020-11-11 21:47:15 -0800ee41352cf827962ad7c5f46bd4c9441bd878c103Renames vic_clm_fract to vic_elm_fracteditcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/cpl/elm_cpl_indices.F90208c992cf96c1f36efbced53f10d0e923c99f2931605160052000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_cpl_indices to elm_cpl_indices 2020-11-11 21:47:32 -0800208c992cf96c1f36efbced53f10d0e923c99f293Renames clm_cpl_indices to elm_cpl_indiceseditcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/cpl/elm_cpl_indices.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_import_export.F90components/elm/src/main/restFileMod.F90components/elm/src/biogeochem/FatesBGCDynMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/biogeophys/CanopyTemperatureMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/main/elmfates_interfaceMod.F90d12bb7032186d3c2aa464b9599dfd38fe758f7e21605160107000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames CLMFatesInterfaceMod to ELMFatesInterfaceMod 2020-11-11 21:48:27 -0800d12bb7032186d3c2aa464b9599dfd38fe758f7e2Renames CLMFatesInterfaceMod to ELMFatesInterfaceModeditcomponents/elm/src/main/restFileMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90editcomponents/elm/src/biogeochem/FatesBGCDynMod.F90editcomponents/elm/src/biogeophys/CanopyTemperatureMod.F90editcomponents/elm/src/main/elm_instMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/utils/elm_varorb.F90components/elm/src/cpl/lnd_comp_esmf.F90467c0b29b4f3bbd943d955853d4408fbe57ab21f1605160227000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_varorb to elm_varorb 2020-11-11 21:50:27 -0800467c0b29b4f3bbd943d955853d4408fbe57ab21fRenames clm_varorb to elm_varorbeditcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/utils/elm_varorb.F90editcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/pdepStreamMod.F908cf3d59fef3f7c84122d5e40b76aa42a7eb67f0d1605160242000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_domain_mct to elm_domain_mct 2020-11-11 21:50:42 -08008cf3d59fef3f7c84122d5e40b76aa42a7eb67f0dRenames clm_domain_mct to elm_domain_mcteditcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/main/ndepStreamMod.F90components/elm/src/unit_test_mocks/csm_share/CMakeLists.txtcomponents/elm/src/unit_test_mocks/dyn_subgrid/dynFileMod_mock.F90components/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90components/elm/src/unit_test_shr/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/GetGlobalValuesMod_mock.F90components/elm/src/main/test/CMakeLists.txtcomponents/elm/src/biogeophys/test/Daylength_test/test_daylength.pfcomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90components/elm/src/dyn_subgrid/test/dynVar_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90.incomponents/elm/src/unit_test_mocks/csm_share/mct_mod_mock.F90components/elm/src/dyn_subgrid/test/dynInitColumns_test/test_init_columns.pfcomponents/elm/src/unit_test_shr/unittestSubgridMod.F90components/elm/src/unit_test_mocks/util_share/spmdMod_mock.F90components/elm/src/biogeophys/test/CMakeLists.txtcomponents/elm/src/biogeophys/test/Daylength_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/csm_share/shr_sys_mod_mock.F90components/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeUninterp.pfcomponents/elm/src/dyn_subgrid/test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90components/elm/src/dyn_subgrid/test/dynInitColumns_test/CMakeLists.txtcomponents/elm/src/main/test/clm_glclnd_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90.incomponents/elm/src/unit_test_mocks/util_share/clm_time_manager_mock.F90components/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights.pfcomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90.incomponents/elm/src/unit_test_mocks/main/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/test_dynTimeInfo.pfcomponents/elm/src/unit_test_mocks/main/histFileMod_mock.F90components/elm/src/main/test/clm_glclnd_test/test_clm_glclnd.pfcomponents/elm/src/unit_test_mocks/util_share/do_genf90components/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeInterp.pfcomponents/elm/src/main/test/subgridWeights_test/CMakeLists.txtcomponents/elm/src/unit_test_mocks/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarShared.F90components/elm/src/main/test/subgridWeights_test/test_subgridWeights.pfcomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights_one_gcell.pfcomponents/elm/src/unit_test_mocks/dyn_subgrid/CMakeLists.txtcomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/CMakeLists.txt05472001c0c047f91370b94bf2cea8cad9a954ec1605160280000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govDeletes test directories that are not used by E3SM 2020-11-11 21:51:20 -080005472001c0c047f91370b94bf2cea8cad9a954ecDeletes test directories that are not used by E3SMdeletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights.pfdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeInterp.pfdeletecomponents/elm/src/unit_test_mocks/main/histFileMod_mock.F90deletecomponents/elm/src/biogeophys/test/Daylength_test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/test_dynTimeInfo.pfdeletecomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90.indeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarTimeUninterp.pfdeletecomponents/elm/src/main/test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynTimeInfo_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/csm_share/CMakeLists.txtdeletecomponents/elm/src/biogeophys/test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/test_dynVarShared.F90deletecomponents/elm/src/dyn_subgrid/test/CMakeLists.txtdeletecomponents/elm/src/main/test/subgridWeights_test/CMakeLists.txtdeletecomponents/elm/src/main/test/subgridWeights_test/test_subgridWeights.pfdeletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynLandunitArea_test/test_update_landunit_weights_one_gcell.pfdeletecomponents/elm/src/unit_test_mocks/util_share/do_genf90deletecomponents/elm/src/biogeophys/test/Daylength_test/test_daylength.pfdeletecomponents/elm/src/unit_test_mocks/dyn_subgrid/dynFileMod_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/CMakeLists.txtdeletecomponents/elm/src/main/test/clm_glclnd_test/test_clm_glclnd.pfdeletecomponents/elm/src/unit_test_mocks/util_share/ncdio_var.F90deletecomponents/elm/src/unit_test_mocks/dyn_subgrid/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynInitColumns_test/test_init_columns.pfdeletecomponents/elm/src/unit_test_shr/unittestSubgridMod.F90deletecomponents/elm/src/unit_test_mocks/util_share/GetGlobalValuesMod_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90.indeletecomponents/elm/src/unit_test_mocks/csm_share/shr_sys_mod_mock.F90deletecomponents/elm/src/dyn_subgrid/test/dynInitColumns_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_shr/CMakeLists.txtdeletecomponents/elm/src/dyn_subgrid/test/dynVar_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/main/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/clm_time_manager_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/spmdMod_mock.F90deletecomponents/elm/src/unit_test_mocks/util_share/ncdio_pio_mock.F90.indeletecomponents/elm/src/unit_test_mocks/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/util_share/restUtilMod_mock.F90deletecomponents/elm/src/main/test/clm_glclnd_test/CMakeLists.txtdeletecomponents/elm/src/unit_test_mocks/csm_share/mct_mod_mock.F90components/elm/src/biogeochem/SatellitePhenologyMod.F90components/elm/src/biogeochem/FireMod.F90components/elm/src/main/ndepStreamMod.F90components/elm/src/main/pdepStreamMod.F904c5496c6060fd164a6157265181d3d1feaebb0e21605160312000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames dom_clm to dom_elm 2020-11-11 21:51:52 -08004c5496c6060fd164a6157265181d3d1feaebb0e2Renames dom_clm to dom_elmeditcomponents/elm/src/biogeochem/SatellitePhenologyMod.F90editcomponents/elm/src/biogeochem/FireMod.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/main/pdepStreamMod.F90components/elm/src/biogeophys/FrictionVelocityMod.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/lnd2atmMod.F9036ed0f7ce35ac4a39c2af661a798aaf4035a70ac1605160332000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames u10_clm_patch to u10_elm_patch 2020-11-11 21:52:12 -080036ed0f7ce35ac4a39c2af661a798aaf4035a70acRenames u10_clm_patch to u10_elm_patcheditcomponents/elm/src/biogeophys/FrictionVelocityMod.F90editcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/surfrdMod.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/utils/AnnualFluxDribbler.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/utils/domainMod.F90components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90components/elm/src/dyn_subgrid/dyncropFileMod.F90components/elm/src/main/abortutils.F90components/elm/src/main/subgridWeightsMod.F90components/elm/src/main/GetGlobalValuesMod.F90components/elm/src/biogeophys/PhotosynthesisMod.F90components/elm/src/biogeophys/SurfaceRadiationMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/main/lnd2glcMod.F90components/elm/src/biogeophys/SnowHydrologyMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/subgridAveMod.F90components/elm/src/main/initSubgridMod.F90components/elm/src/main/decompMod.F90components/elm/src/dyn_subgrid/dynInitColumnsMod.F90components/elm/src/main/glc2lndMod.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/biogeophys/SurfaceAlbedoMod.F90components/elm/src/biogeophys/CanopyFluxesMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/utils/spmdGathScatMod.F90components/elm/src/biogeophys/SnowSnicarMod.F903be3f551dbd83cf49a3fca9dac493149cb37a46b1605160353000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clmlevel to elmlevel 2020-11-11 21:52:33 -08003be3f551dbd83cf49a3fca9dac493149cb37a46bRenames clmlevel to elmleveleditcomponents/elm/src/biogeophys/SurfaceAlbedoMod.F90editcomponents/elm/src/main/surfrdMod.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90editcomponents/elm/src/main/subgridAveMod.F90editcomponents/elm/src/main/subgridWeightsMod.F90editcomponents/elm/src/utils/spmdGathScatMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/main/lnd2glcMod.F90editcomponents/elm/src/biogeophys/SnowSnicarMod.F90editcomponents/elm/src/dyn_subgrid/dyncropFileMod.F90editcomponents/elm/src/main/GetGlobalValuesMod.F90editcomponents/elm/src/biogeochem/DryDepVelocity.F90editcomponents/elm/src/main/decompMod.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/biogeophys/SurfaceRadiationMod.F90editcomponents/elm/src/biogeophys/PhotosynthesisMod.F90editcomponents/elm/src/dyn_subgrid/dynInitColumnsMod.F90editcomponents/elm/src/biogeophys/SnowHydrologyMod.F90editcomponents/elm/src/main/initSubgridMod.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/utils/AnnualFluxDribbler.F90editcomponents/elm/src/biogeophys/CanopyFluxesMod.F90editcomponents/elm/src/main/abortutils.F90editcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/utils/domainMod.F90components/elm/src/biogeochem/DryDepVelocity.F903036327472e75c017a2a75c1acee43e2ff66d51e1605160450000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clmveg to elmveg 2020-11-11 21:54:10 -08003036327472e75c017a2a75c1acee43e2ff66d51eRenames clmveg to elmvegeditcomponents/elm/src/biogeochem/DryDepVelocity.F90components/elm/src/biogeophys/UrbanParamsType.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/biogeophys/UrbanFluxesMod.F90components/elm/src/biogeophys/UrbanRadiationMod.F90components/elm/src/biogeophys/BalanceCheckMod.F90components/elm/src/biogeophys/UrbanAlbedoMod.F90e51c476d82529bb6aec8150ec6e45c7e2b9fefbf1605160470000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates output message from CLM to ELM 2020-11-11 21:54:30 -0800e51c476d82529bb6aec8150ec6e45c7e2b9fefbfUpdates output message from CLM to ELMeditcomponents/elm/src/biogeophys/UrbanRadiationMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/BalanceCheckMod.F90editcomponents/elm/src/biogeophys/UrbanParamsType.F90editcomponents/elm/src/biogeophys/UrbanFluxesMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/biogeophys/UrbanAlbedoMod.F90components/elm/src/biogeophys/SnowSnicarMod.F90d7fde77ed19d001d7c76feecf2bd2f5eeb70da271605160489000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames tau_clm to tau_elm 2020-11-11 21:54:49 -0800d7fde77ed19d001d7c76feecf2bd2f5eeb70da27Renames tau_clm to tau_elmeditcomponents/elm/src/biogeophys/SnowSnicarMod.F90components/elm/bld/queryDefaultNamelist.plcomponents/elm/src/main/controlMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlc5efbb75e7b4eb2c81b955eb0881b65bc1deb9cc1605160563000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames clm_inparm to elm_inparm 2020-11-11 21:56:03 -0800c5efbb75e7b4eb2c81b955eb0881b65bc1deb9ccRenames clm_inparm to elm_inparmeditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/bld/queryDefaultNamelist.pleditcomponents/elm/src/main/controlMod.F90editcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml800b5e180d68b2acf02e8d973a5a8b2d0247f26f1605160607000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames multiple categories in namelist from clm to elm 2020-11-11 21:56:47 -0800800b5e180d68b2acf02e8d973a5a8b2d0247f26fRenames multiple categories in namelist from clm to elmeditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/elm/src/main/elm_varctl.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CNCarbonStateType.F90components/elm/src/main/controlMod.F90components/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/biogeochem/CNCarbonStateType.F90components/elm/src/biogeochem/CNCarbonFluxType.F90components/elm/src/biogeochem/PhosphorusFluxType.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90components/elm/src/biogeophys/CanopyHydrologyMod.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xmlea4cd6b7262b5970c508e981a63683c3f392876d1605161856000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges multiple namelist options from CLM to ELM 2020-11-11 22:17:36 -0800ea4cd6b7262b5970c508e981a63683c3f392876dChanges multiple namelist options from CLM to ELMeditcomponents/elm/src/biogeochem/AllocationMod.F90editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/src/biogeochem/PhosphorusFluxType.F90editcomponents/elm/src/biogeochem/CNCarbonStateType.F90editcomponents/elm/src/biogeochem/CNNitrogenFluxType.F90editcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/external_models/emi/src/elm_stub/elm_types_stub/CNCarbonStateType.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/biogeophys/CanopyHydrologyMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/biogeochem/CNCarbonFluxType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90editcomponents/elm/src/main/controlMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/controlMod.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90f68f52cd35558050a7f041faa5229e080a2936e41605162044000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM-PFLTORAN interface to ELM-PFLOTRAN interface 2020-11-11 22:20:44 -0800f68f52cd35558050a7f041faa5229e080a2936e4Changes CLM-PFLTORAN interface to ELM-PFLOTRAN interfaceeditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_instMod.F90components/elm/src/main/elm_driver.F90c1c83382a04c1fcdb6177ee7bc35bedae168d5431605162161000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChange clm_interface_data to elm_interface_data 2020-11-11 22:22:41 -0800c1c83382a04c1fcdb6177ee7bc35bedae168d543Change clm_interface_data to elm_interface_dataeditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/elm_interface_pflotranMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90editcomponents/elm/src/main/elm_instMod.F90components/elm/src/main/elm_interface_pflotranMod.F9069f4eb1adcf3d8e496f034c5261fa1608a9795511605162446000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in interface for PFLOTRAN 2020-11-11 22:27:26 -080069f4eb1adcf3d8e496f034c5261fa1608a979551Changes CLM to ELM in interface for PFLOTRANeditcomponents/elm/src/main/elm_interface_pflotranMod.F90components/elm/src/main/initGridCellsMod.F90components/elm/src/main/initSubgridMod.F909fe4f1f59a224410be7dcabbcc7de789a229e7441605162539000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in initSubgridMod 2020-11-11 22:28:59 -08009fe4f1f59a224410be7dcabbcc7de789a229e744Changes CLM to ELM in initSubgridModeditcomponents/elm/src/main/initGridCellsMod.F90editcomponents/elm/src/main/initSubgridMod.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/elm_driver.F902377cf56a360ab80c57bd23aceb6c396039cd5251605162908000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in timers 2020-11-11 22:35:08 -08002377cf56a360ab80c57bd23aceb6c396039cd525Changes CLM to ELM in timerseditcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90edf2ee55e9cefbbafb208c9f67205e17fadea3db1605163038000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges subroutine name 2020-11-11 22:37:18 -0800edf2ee55e9cefbbafb208c9f67205e17fadea3dbChanges subroutine nameeditcomponents/elm/src/main/elm_initializeMod.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/pftvarcon.F9005093ecd8f0488bc1bf6d5f2b51918abb90f8b181605163156000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges name of the option to merge crops 2020-11-11 22:39:16 -080005093ecd8f0488bc1bf6d5f2b51918abb90f8b18Changes name of the option to merge cropseditcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/main/pftvarcon.F90components/elm/src/main/histFileMod.F9088a418881ea528315cbf0d63a76782be107ab0661605163357000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in histFileMod 2020-11-11 22:42:37 -080088a418881ea528315cbf0d63a76782be107ab066Changes CLM to ELM in histFileModeditcomponents/elm/src/main/histFileMod.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/restFileMod.F90components/elm/src/dyn_subgrid/dynpftFileMod.F90components/elm/src/main/subgridRestMod.F90ab92ae4d71af59fa77af298bafc6d17067af75d11605163489000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChange user namelist name 2020-11-11 22:44:49 -0800ab92ae4d71af59fa77af298bafc6d17067af75d1Change user namelist nameeditcomponents/elm/src/main/elm_varctl.F90editcomponents/elm/src/dyn_subgrid/dynpftFileMod.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/restFileMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/elm_driver.F90components/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90a35f9e78668c93ed53fc98236dc132f848838e8a1605163783000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges BGC subroutine name from CLM to ELM 2020-11-11 22:49:43 -0800a35f9e78668c93ed53fc98236dc132f848838e8aChanges BGC subroutine name from CLM to ELMeditcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/external_models/emi/src/elm_stub/utils/clm_varctl.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/elm/src/cpl/lnd_comp_esmf.F90components/elm/src/main/pdepStreamMod.F90components/elm/src/main/histFileMod.F90components/elm/src/main/elm_interface_funcsMod.F90components/elm/src/main/controlMod.F90components/elm/src/cpl/lnd_comp_mct.F90components/elm/src/main/initInterp.F90components/elm/src/main/surfrdUtilsMod.F90components/elm/src/main/subgridRestMod.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elm_driver.F90components/elm/src/main/elm_initializeMod.F90components/elm/src/main/ndepStreamMod.F908e5f43f64c1bca96ced0eb9b931fd2c9cc57c1821605164353000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges CLM to ELM in comments 2020-11-11 22:59:13 -08008e5f43f64c1bca96ced0eb9b931fd2c9cc57c182Changes CLM to ELM in commentseditcomponents/elm/src/main/pdepStreamMod.F90editcomponents/elm/src/main/surfrdUtilsMod.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/cpl/lnd_comp_esmf.F90editcomponents/elm/src/main/ndepStreamMod.F90editcomponents/elm/src/main/elm_driver.F90editcomponents/elm/src/main/controlMod.F90editcomponents/elm/src/cpl/lnd_comp_mct.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/elm_initializeMod.F90editcomponents/elm/src/main/initInterp.F90editcomponents/elm/src/main/elm_interface_funcsMod.F90components/eam/bld/namelist_files/namelist_defaults_cam.xml7cfdd8d07711e6e9c7716b39c09eab6711d0e4c31605249962000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comsetup conusx4 res for theta 2020-11-13 00:46:02 -06007cfdd8d07711e6e9c7716b39c09eab6711d0e4c3setup conusx4 res for thetaeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mpas-source4770e56232a632a0c04af5c07e6a858357469f621605282524000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govmpas-source: improve performance of diagnostics 2020-11-13 07:48:44 -08004770e56232a632a0c04af5c07e6a858357469f62mpas-source: improve performance of diagnosticseditcomponents/mpas-sourcecomponents/eam/src/physics/crm/sam/crm_surface.F90components/eam/src/physics/crm/sam/SGS_TKE/shear_prod2D.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar3D.F90components/eam/src/physics/crm/sam/advect2_mom_z.F90components/eam/src/physics/crm/sam/adams.F90components/eam/src/physics/crm/sam/setperturb.F90components/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom2D.F90components/eam/src/physics/crm/samxx/setparm.cppcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar2D.F90components/eam/src/physics/crm/sam/gammafff.ccomponents/eam/src/physics/crm/sam/ice_fall.F90components/eam/src/physics/crm/sam/advect2_mom_xy.F90components/eam/src/physics/crm/sam/params.F90components/eam/src/physics/crm/sam/SGS_TKE/tke_full.F90components/eam/src/physics/crm/sam/random.F90components/eam/src/physics/crm/sam/press_rhs.F90components/eam/src/physics/crm/sam/abcoefs.F90components/eam/src/physics/crm/sam/kurant.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90components/eam/src/physics/crm/sam/SGS_TKE/shear_prod3D.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_proc.F90components/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom3D.F90components/eam/src/physics/crm/sam/damping.F90externals/YAKLcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/sam/pressure.F90components/eam/src/physics/crm/sam/coriolis.F90components/eam/src/physics/crm/sam/atmosphere.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/micro_params.F90components/eam/src/physics/crm/sam/sat.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar2D.F90components/eam/src/physics/crm/samxx/test/build/runtest.shcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/SGS_TKE/sgs.F90components/eam/src/physics/crm/sam/diagnose.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_init.F90components/eam/src/physics/crm/sam/forcing.F90components/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar3D.F90components/eam/src/physics/crm/sam/MICRO_SAM1MOM/cloud.F90components/eam/src/physics/crm/samxx/samxx_const.h940e6b9a71569ad8fb2cd8c6fb25bd06a8a5b0e81605292364000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing the constants being different in samxx than in sam. Diffs in standalone are much better now. 2020-11-13 13:32:44 -0500940e6b9a71569ad8fb2cd8c6fb25bd06a8a5b0e8Fixing the constants being different in samxx than in sam. Diffs in standalone are much better now.editcomponents/eam/src/physics/crm/sam/SGS_TKE/tke_full.F90editcomponents/eam/src/physics/crm/sam/kurant.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/cloud.F90editcomponents/eam/src/physics/crm/sam/forcing.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom2D.F90editcomponents/eam/src/physics/crm/sam/advect2_mom_xy.F90editcomponents/eam/src/physics/crm/sam/coriolis.F90editcomponents/eam/src/physics/crm/sam/atmosphere.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/micro_params.F90editcomponents/eam/src/physics/crm/samxx/setparm.cppeditcomponents/eam/src/physics/crm/sam/crm_surface.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/shear_prod3D.F90editcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar3D.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar3D.F90editcomponents/eam/src/physics/crm/sam/params.F90editcomponents/eam/src/physics/crm/sam/pressure.F90editcomponents/eam/src/physics/crm/sam/damping.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_scalar2D.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_init.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/sgs.F90editcomponents/eam/src/physics/crm/sam/diagnose.F90editcomponents/eam/src/physics/crm/sam/advect2_mom_z.F90editcomponents/eam/src/physics/crm/samxx/test/build/runtest.sheditcomponents/eam/src/physics/crm/sam/random.F90editcomponents/eam/src/physics/crm/sam/gammafff.ceditcomponents/eam/src/physics/crm/sam/press_rhs.F90editcomponents/eam/src/physics/crm/sam/setperturb.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/precip_proc.F90editcomponents/eam/src/physics/crm/sam/ADV_MPDATA/advect_scalar2D.F90editcomponents/eam/src/physics/crm/sam/SGS_TKE/shear_prod2D.F90editcomponents/eam/src/physics/crm/sam/adams.F90editexternals/YAKLeditcomponents/eam/src/physics/crm/sam/sat.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/sam/abcoefs.F90editcomponents/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90editcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/sam/SGS_TKE/diffuse_mom3D.F90editcomponents/eam/src/physics/crm/sam/ice_fall.F90editcomponents/eam/src/physics/crm/samxx/samxx_const.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_module.F90cfb857094283add11320dbb7c557d6ce0e819f9d1605292372000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFixing fortran code bug in crm_clear_rh and mirroring in C++ code 2020-11-13 13:32:52 -0500cfb857094283add11320dbb7c557d6ce0e819f9dFixing fortran code bug in crm_clear_rh and mirroring in C++ codeeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/samxx_const.hd13db34a59007418c50cef98560a35c32e59fccd1605292375000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comC++ code now gives correct results in standalone on the CPU 2020-11-13 13:32:55 -0500d13db34a59007418c50cef98560a35c32e59fccdC++ code now gives correct results in standalone on the CPUeditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/samxx_const.hcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlbb017e2eb0e89c4d4e2496250a8efa88752014f41605292381000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix aqua compset for MMF w/ SAM++ modified: components/eam/cime_config/config_component.xml modified: components/eam/cime_config/config_compsets.xml 2020-11-13 13:33:01 -0500bb017e2eb0e89c4d4e2496250a8efa88752014f4Fix aqua compset for MMF w/ SAM++editcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/test/build/runtest.shcomponents/eam/src/physics/crm/samxx/test/build/cmakescript.shcomponents/eam/src/physics/crm/samxx/test/README.mdcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/eam/src/physics/crm/samxx/test/build/nccmp.pycomponents/eam/src/physics/crm/samxx/test/build/run_standalone_batch.shcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shcomponents/eam/src/physics/crm/samxx/README.mdcomponents/eam/src/physics/crm/samxx/test/build/README.mdcomponents/eam/src/physics/crm/samxx/test/build/summit_gpu.sh7e5f3ca0948affe8a8fa7c72956d8838f03fb2791605292385000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate MMF standalone test files deleted: components/eam/src/physics/crm/samxx/README.md new file: components/eam/src/physics/crm/samxx/test/README.md deleted: components/eam/src/physics/crm/samxx/test/build/README.md modified: components/eam/src/physics/crm/samxx/test/build/cmakescript.sh modified: components/eam/src/physics/crm/samxx/test/build/nccmp.py new file: components/eam/src/physics/crm/samxx/test/build/run_standalone_batch.sh modified: components/eam/src/physics/crm/samxx/test/build/runtest.sh modified: components/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.sh modified: components/eam/src/physics/crm/samxx/test/build/summit_gpu.sh modified: components/eam/src/physics/crm/samxx/test/cpp_driver.F90 2020-11-13 13:33:05 -05007e5f3ca0948affe8a8fa7c72956d8838f03fb279Update MMF standalone test filesaddcomponents/eam/src/physics/crm/samxx/test/README.mdeditcomponents/eam/src/physics/crm/samxx/test/build/runtest.sheditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90editcomponents/eam/src/physics/crm/samxx/test/build/nccmp.pyeditcomponents/eam/src/physics/crm/samxx/test/build/summit_gpu.sheditcomponents/eam/src/physics/crm/samxx/test/build/cmakescript.shaddcomponents/eam/src/physics/crm/samxx/test/build/run_standalone_batch.sheditcomponents/eam/src/physics/crm/samxx/test/build/summit_cpu_gnu.shdeletecomponents/eam/src/physics/crm/samxx/README.mddeletecomponents/eam/src/physics/crm/samxx/test/build/README.mdcomponents/eam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/eam/src/physics/crm/samxx/diffuse_scalar2D.cppdfa9be34d5e307cf5e81474a0582a71cbe32683d1605292392000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMajor bug fix - index error in SAM++ scalar diff modified: components/eam/src/physics/crm/samxx/diffuse_scalar2D.cpp modified: components/eam/src/physics/crm/samxx/diffuse_scalar3D.cpp 2020-11-13 13:33:12 -0500dfa9be34d5e307cf5e81474a0582a71cbe32683dMajor bug fix - index error in SAM++ scalar diffeditcomponents/eam/src/physics/crm/samxx/diffuse_scalar2D.cppeditcomponents/eam/src/physics/crm/samxx/diffuse_scalar3D.cppcomponents/eam/src/physics/crm/sam/kurant.F90components/eam/src/physics/crm/samxx/kurant.cpp873e95a1eb2550d63440770078b8778be1025a6a1605292396000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCRM Kurant update Make both Fortran and C++ CRM code to use max_ncycle = 4 modified: components/eam/src/physics/crm/sam/kurant.F90 modified: components/eam/src/physics/crm/samxx/kurant.cpp 2020-11-13 13:33:16 -0500873e95a1eb2550d63440770078b8778be1025a6aCRM Kurant updateeditcomponents/eam/src/physics/crm/sam/kurant.F90editcomponents/eam/src/physics/crm/samxx/kurant.cppcomponents/eam/src/physics/crm/samxx/setperturb.cppacd2d3f15bc499cf6f0bfd5af9d1b65f533629401605292400000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comUpdate perturb_t_magnitude in SAM++ modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2020-11-13 13:33:20 -0500acd2d3f15bc499cf6f0bfd5af9d1b65f53362940Update perturb_t_magnitude in SAM++editcomponents/eam/src/physics/crm/samxx/setperturb.cppcomponents/eam/src/physics/crm/samxx/ice_fall.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/tke_full.cppcomponents/eam/src/physics/crm/samxx/diffuse_mom3D.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/advect2_mom_z.cppcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/crmsurface.cppcomponents/eam/src/physics/crm/samxx/diagnose.cppcomponents/eam/src/physics/crm/samxx/samxx_const.hcomponents/eam/src/physics/crm/samxx/damping.cppe7632510af91b75becae622b013a8a52c5ca08ad1605292404000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMisc C++ casting and index updates modified: components/eam/src/physics/crm/samxx/advect2_mom_z.cpp modified: components/eam/src/physics/crm/samxx/crmsurface.cpp modified: components/eam/src/physics/crm/samxx/damping.cpp modified: components/eam/src/physics/crm/samxx/diagnose.cpp modified: components/eam/src/physics/crm/samxx/diffuse_mom3D.cpp modified: components/eam/src/physics/crm/samxx/ice_fall.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/samxx_const.h modified: components/eam/src/physics/crm/samxx/tke_full.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp 2020-11-13 13:33:24 -0500e7632510af91b75becae622b013a8a52c5ca08adMisc C++ casting and index updateseditcomponents/eam/src/physics/crm/samxx/diffuse_mom3D.cppeditcomponents/eam/src/physics/crm/samxx/advect2_mom_z.cppeditcomponents/eam/src/physics/crm/samxx/ice_fall.cppeditcomponents/eam/src/physics/crm/samxx/crmsurface.cppeditcomponents/eam/src/physics/crm/samxx/tke_full.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/diagnose.cppeditcomponents/eam/src/physics/crm/samxx/samxx_const.heditcomponents/eam/src/physics/crm/samxx/damping.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/dynamics/se/se_single_column_mod.F907d3c822b71f49f7e3871648c40a9e8713501a3571605293437000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govrename dummy1 variable to temp_tend, which is more descriptive 2020-11-13 10:50:37 -08007d3c822b71f49f7e3871648c40a9e8713501a357rename dummy1 variable to temp_tend, which is more descriptiveeditcomponents/eam/src/dynamics/se/se_single_column_mod.F90SCM_clubb_silhs_tau.cshf2162525a4b8a2541a76a03abbae2e1ee37413811605297533000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis run script can reproduce good simulations for both SCM cases BOMEX and RF01. Issue #18. 2020-11-13 13:58:53 -0600f2162525a4b8a2541a76a03abbae2e1ee3741381This run script can reproduce good simulations for both SCM cases BOMEX and RF01. Issue #18.addSCM_clubb_silhs_tau.cshcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/cam/physics_types.F90components/cam/src/physics/cam/physics_update_mod.F90cime/src/share/util/shr_assert_mod.F90.incomponents/cam/src/utils/cam_grid_support.F90run_silhs_anvil_gust.cshcime/src/externals/pio1/pio/piodarray.F90.incomponents/cam/src/physics/cam/physpkg.F908bff98c61cbabba3bd84d2eca79aa7aa0694a1fa1605308640000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore 'state_debug_checks' in physpkg.F90, also output the location when we find bad value of state%t. 2020-11-13 17:04:00 -06008bff98c61cbabba3bd84d2eca79aa7aa0694a1faMore 'state_debug_checks' in physpkg.F90, also output the location when we find bad value of state%t.editcime/src/externals/pio1/pio/piodarray.F90.ineditcomponents/cam/src/physics/cam/physpkg.F90editcomponents/cam/src/utils/cam_grid_support.F90editcomponents/cam/src/physics/cam/physics_types.F90editrun_silhs_anvil_gust.csheditcime/src/share/util/shr_assert_mod.F90.ineditcomponents/cam/src/physics/cam/physics_update_mod.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/eam/cime_config/testdefs/testmods_dirs/eam/genmmf/user_nl_eamcime_config/tests.pycomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eam2076eb8d20c5f9d4eff0c184ae364e8137e0c4c91605341527000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfix mmf tests 2020-11-14 02:12:07 -06002076eb8d20c5f9d4eff0c184ae364e8137e0c4c9fix mmf testsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/genmmf/user_nl_eameditcime_config/tests.pyeditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/crmout/user_nl_eamcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elm96843c011f34a3a7d7ec0bd25406ff0ac1123f061605576323000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes namelist options for a test 2020-11-16 17:25:23 -080096843c011f34a3a7d7ec0bd25406ff0ac1123f06Fixes namelist options for a testeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcinterface/user_nl_elmcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elma529345c7405a743bd55fd4740751255d43481221605589594000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govfixes the path surface dataset 2020-11-16 21:06:34 -0800a529345c7405a743bd55fd4740751255d4348122fixes the path surface dataseteditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/user_nl_elmcomponents/homme/src/share/prim_driver_base.F9072f3bea00fd51f3e05ddfc0db92a5add45bdd64f1605631726000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1922.llnl.govput SCM logical around SCM specific code block 2020-11-17 08:48:46 -080072f3bea00fd51f3e05ddfc0db92a5add45bdd64fput SCM logical around SCM specific code blockeditcomponents/homme/src/share/prim_driver_base.F90components/mpas-sourceb7079aa9f8a5b0a336bb7b0e53ec7204e2e054981605649035000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: updated sea ice with alignment of atmos coupling 2020-11-17 15:37:15 -0600b7079aa9f8a5b0a336bb7b0e53ec7204e2e05498Update mpas-source: updated sea ice with alignment of atmos couplingeditcomponents/mpas-sourcecomponents/eam/src/physics/crm/sam/crm_module.F90d5ff64dd9849b88260e07551675c24366fe5c6831605739344000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comtypo fix modified: components/eam/src/physics/crm/sam/crm_module.F90 2020-11-18 17:42:24 -0500d5ff64dd9849b88260e07551675c24366fe5c683typo fixeditcomponents/eam/src/physics/crm/sam/crm_module.F90cime_config/machines/config_pio.xml941ee1a6e508c70fbb4ec9d08704055c912360d31605757766000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govSet PIO_ROOT=1 for ne30-coupled cases on sandiatoss3 2020-11-18 21:49:26 -0600941ee1a6e508c70fbb4ec9d08704055c912360d3Set PIO_ROOT=1 for ne30-coupled cases on sandiatoss3editcime_config/machines/config_pio.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcomponents/homme/src/share/prim_driver_base.F90components/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/src/dynamics/se/se_single_column_mod.F90d19673f5bf22d94343723184c193997414c60f251605889189000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1538.llnl.govremove SCM from SL tracer advection 2020-11-20 08:19:49 -0800d19673f5bf22d94343723184c193997414c60f25remove SCM from SL tracer advectioneditcomponents/homme/src/share/prim_driver_base.F90editcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/eam/src/dynamics/se/se_single_column_mod.F90.travis/run.sh68af6b85d378fc8aa1115bf63df9d6bbc807091d1605901596000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govtravis: Print e3sm bldlog if build fails This is, by far, the most important one to print. 2020-11-20 12:46:36 -070068af6b85d378fc8aa1115bf63df9d6bbc807091dtravis: Print e3sm bldlog if build failsedit.travis/run.shcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandscime_config/machines/config_pio.xmlcime_config/tests.py9d0020a37bdd1a5bd35c4c3fb141855cf0042e871605902964000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govMove PIO_ROOT=1 mod to ERP testmod 2020-11-20 14:09:24 -06009d0020a37bdd1a5bd35c4c3fb141855cf0042e87Move PIO_ROOT=1 mod to ERP testmodeditcime_config/machines/config_pio.xmladdcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandseditcime_config/tests.pycime3310ef235e8b87a77a9184f3d550fc385a70007f1605903603000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govFix build time calls 2020-11-20 13:20:03 -07003310ef235e8b87a77a9184f3d550fc385a70007fFix build time callseditcimecime845e73aaea9d7dc7d46d4b6669953ed4bd3c26291605904274000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCheck time availability 2020-11-20 13:31:14 -0700845e73aaea9d7dc7d46d4b6669953ed4bd3c2629Check time availabilityeditcimecimebb5738e41235259bb5455696896be821f4bcc2411605906200000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAnother cime build fix 2020-11-20 14:03:20 -0700bb5738e41235259bb5455696896be821f4bcc241Another cime build fixeditcimecime4a56128c9aff4a38db5148262520845d424524971605911580000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime again with new prov stuff 2020-11-20 15:33:00 -07004a56128c9aff4a38db5148262520845d42452497Update cime again with new prov stuffeditcimecomponents/homme/src/share/prim_driver_base.F90151afd0056e26340c51512eeee007de3680e220c1605914098000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz2306.llnl.govfurther extration from SL transport in SCM 2020-11-20 15:14:58 -0800151afd0056e26340c51512eeee007de3680e220cfurther extration from SL transport in SCMeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F901f7a0891dedec9dd6a36ed818d6fcf95aac27aa31605917560000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govcleanup 2020-11-20 16:12:40 -08001f7a0891dedec9dd6a36ed818d6fcf95aac27aa3cleanupeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F909d6a9196c5f716e4ea68d0aed801edaa2fd1f2f21605919101000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govwhitespace issue fix 2020-11-20 16:38:21 -08009d6a9196c5f716e4ea68d0aed801edaa2fd1f2f2whitespace issue fixeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F909149e30b3bdb330438ac684229eb14994095bf281605919327000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govlinebreak fix 2020-11-20 16:42:07 -08009149e30b3bdb330438ac684229eb14994095bf28linebreak fixeditcomponents/homme/src/share/prim_driver_base.F90cime6b02dba318d92d3886f2e4b266bd1b8f90a629191605987730000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govfinal cime update 2020-11-21 12:42:10 -07006b02dba318d92d3886f2e4b266bd1b8f90a62919final cime updateeditcimecomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmlcomponents/eam/bld/namelist_files/use_cases/scam_generic.xml7b928be54e0d8abd25c4370d4bac3d883e4fbc531606171253000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz1532.llnl.govremove unnecessary nu parameter from SCM namelist settings 2020-11-23 14:40:53 -08007b928be54e0d8abd25c4370d4bac3d883e4fbc53remove unnecessary nu parameter from SCM namelist settingseditcomponents/eam/bld/namelist_files/use_cases/scam_arm97.xmleditcomponents/eam/bld/namelist_files/use_cases/scam_generic.xmlcime_config/testmods_dirs/allactive/force_pio_root1/shell_commandscime_config/testmods_dirs/allactive/pioroot1/shell_commandscime_config/tests.py33007ff1d33c5775fdeead0500e929c82ff8d8d51606175536000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate ERP testmod 2020-11-23 17:52:16 -060033007ff1d33c5775fdeead0500e929c82ff8d8d5Update ERP testmoddeletecime_config/testmods_dirs/allactive/force_pio_root1/shell_commandseditcime_config/tests.pyaddcime_config/testmods_dirs/allactive/pioroot1/shell_commandscomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlfaa2eddaca782efd074135543ec66541c679c4de1606243527000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgswitch theta-l dycore to tensorHV 2020-11-24 12:45:27 -0600faa2eddaca782efd074135543ec66541c679c4deswitch theta-l dycore to tensorHVeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml9364a2e53e2a0e10b0a82662066b94aaf5783e531606254243000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgall hgrid= conditions need a dyn_target= also 2020-11-24 15:44:03 -06009364a2e53e2a0e10b0a82662066b94aaf5783e53all hgrid= conditions need a dyn_target= alsoeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mosart/src/riverroute/RtmHistFile.F90components/mosart/src/riverroute/RtmIO.F90components/mosart/src/riverroute/RtmRestFile.F901a4c0f3b49eeda037ffd4db407793026f204aa201606263309000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govIncrease MOSART restart file name lengths 2020-11-24 18:15:09 -06001a4c0f3b49eeda037ffd4db407793026f204aa20Increase MOSART restart file name lengthseditcomponents/mosart/src/riverroute/RtmHistFile.F90editcomponents/mosart/src/riverroute/RtmIO.F90editcomponents/mosart/src/riverroute/RtmRestFile.F90cime_config/testmods_dirs/allactive/wcprod/READMEcime_config/testmods_dirs/allactive/wcprod/user_nl_elmcime_config/testmods_dirs/allactive/wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/wcprod/shell_commandscime_config/testmods_dirs/allactive/wcprod/user_nl_eame97442f31278f271df0266b0af9f40387d1783161606347953000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd wcprod test mod Add wcprod test mod which is initially set to reproduce settings for v2 tuning runs. Leave version out of name of test mod so it can adapt to whatever wcprod needs as code evolves. 2020-11-25 17:45:53 -0600e97442f31278f271df0266b0af9f40387d178316Add wcprod test modaddcime_config/testmods_dirs/allactive/wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/wcprod/user_nl_elmaddcime_config/testmods_dirs/allactive/wcprod/READMEaddcime_config/testmods_dirs/allactive/wcprod/user_nl_eamaddcime_config/testmods_dirs/allactive/wcprod/user_nl_mpasocime_config/machines/config_machines.xmlcb6683e2e4b7840fbc0aa732afa6653c34405d271606348590000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate Blues modules to nvhpc 2020-11-25 17:56:30 -0600cb6683e2e4b7840fbc0aa732afa6653c34405d27Update Blues modules to nvhpceditcime_config/machines/config_machines.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml81aa9e8071926119e7a6e2ad0f22f325ef5730461606355059000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comchange 3 to 3.0 2020-11-25 19:44:19 -060081aa9e8071926119e7a6e2ad0f22f325ef573046change 3 to 3.0editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/phys_grid.F900801eb8572ae11ffecc86cf616ee55c3e23642c81606593194000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comReplace array reference argument with a scalar The call to call proc_heap_adjust(inv_proc_heap(ntmp2), proc_heap_remove, & max_nvsmptasks, proc_heap_len, proc_heap, & proc_cost, inv_proc_heap) in phys_grid.F90 where subroutine proc_heap_adjust(updated, remove, heap_dlen, & heap_len, heap, cost, inv_heap) ... integer, intent(in) :: updated ... integer, intent(inout) :: inv_heap(0:npes-1) modifies 'inv_heap' in the routine proc_heap_adjust, and changes the value at the location 'inv_proc_heap(ntmp2)'. Compilation with optimization greater than -O0 apparently caches this value (since it is declared 'intent(in)'), so 'updated' is not changed within the scope of the 'proc_heap_adjust' routine. -O0 compilation does not, changing the value on 'updated' internally when 'inv_proc_heap(ntmp2)' is changed, which causes a failure. This bug is fixed by changing the call as follows: integer :: updated ... updated = inv_proc_heap(ntmp2) call proc_heap_adjust(updated, proc_heap_remove, & max_nvsmptasks, proc_heap_len, proc_heap, & proc_cost, inv_proc_heap) [BFB] 2020-11-28 13:53:14 -06000801eb8572ae11ffecc86cf616ee55c3e23642c8Replace array reference argument with a scalareditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/src/physics/cam/phys_grid.F9071b980e5cc6ef4371379962849b38adae5b024cd1606594543000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comFix mis-declared variables The local variables real(r8):: proc_ip ! process id of parent of current element real(r8):: proc_il ! process id of left child of current element real(r8):: proc_ir ! process id of right child of current element in the routine proc_heap_adjust in phys_grid.F90 are mis-declared. These should be integer (though the error is innocuous except for the Cray compiler). [BFB] 2020-11-28 14:15:43 -060071b980e5cc6ef4371379962849b38adae5b024cdFix mis-declared variableseditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/src/physics/cam/phys_grid.F90b4fb6c5e8698998816aafd56cfef4aedcc53bb2c1606660150000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comExplain why replacing array reference argument with a scalar To prevent future changes from undoing this bug fix, added a comment to explain why this is needed. [BFB] 2020-11-29 08:29:10 -0600b4fb6c5e8698998816aafd56cfef4aedcc53bb2cExplain why replacing array reference argument with a scalareditcomponents/eam/src/physics/cam/phys_grid.F90components/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/shell_commandscomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_elmcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_eam520161f030419bfb21c7031a8bd8a3a2fb02a03a1606699938000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd wcprod test mod for eam Add wcprod test mod for eam. Leave version out of name of test mod so it can adapt to whatever wcprod needs as code evolves. Initial values are those in v2 tuning runs 2020-11-29 19:32:18 -0600520161f030419bfb21c7031a8bd8a3a2fb02a03aAdd wcprod test mod for eamaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_elmaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/shell_commandsaddcomponents/eam/cime_config/testdefs/testmods_dirs/eam/wcprod/user_nl_eamcime_config/tests.pycbc6092dc785b12178a68a73deac0f18b0ecd1f71606704109000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate e3sm_prod suite to v2 cases Use v2 tri-grid resolutions and all CMIP6 compsets. Also add test mods that use theta-l and other v2 settings. 2020-11-29 20:41:49 -0600cbc6092dc785b12178a68a73deac0f18b0ecd1f7Update e3sm_prod suite to v2 caseseditcime_config/tests.pycomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandsd2068389298b9ef38902613d9d2baa2cf3bc16f41606755849000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges NTASKS for ELM-USRDAT test ELM-USRDAT is a single-point test, so NTASKS are set to 1. [BFB] 2020-11-30 09:04:09 -0800d2068389298b9ef38902613d9d2baa2cf3bc16f4Changes NTASKS for ELM-USRDAT testeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/usrdat/shell_commandscime_config/machines/config_machines.xmld0b958475083d277d592b38acda6014a1af7295c1606764573000http://carson.math.uwm.edu/jenkins/user/sarichsarichsarich@mcs.anl.govaccount name on bebop cluster has been renamed 'e3sm' 2020-11-30 13:29:33 -0600d0b958475083d277d592b38acda6014a1af7295caccount name on bebop cluster has been renamed 'e3sm'editcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cosp2/optics/cosp_optics.F90d6a358eb89464e19aa9f037cbf99da21d148d9221606775829000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govBug fix to account for snow backscattering in COSPv2 Fix a bug related to the calculation of separated ice attenuated backscatter in lidar simulator. The issue was found by Greg Cesana. The snow is not well accounted for in the separated ice and liquid attenuated backscatter signal (although it's fine for the total attenuated backscatter). It has to do with the "npart" indices. The snow index is 5 and is not accounted for in COSPv2. This has potentially large impact on cloud phase diagnostics from the lidar simulator. [BFB] except for COSP diagnostics 2020-11-30 14:37:09 -0800d6a358eb89464e19aa9f037cbf99da21d148d922Bug fix to account for snow backscattering in COSPv2editcomponents/eam/src/physics/cosp2/optics/cosp_optics.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F906668bde97b927289057bc40370816158e1ea3ad51606780407000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes some comments and magic numbers 2020-11-30 15:53:27 -08006668bde97b927289057bc40370816158e1ea3ad5Fixes some comments and magic numberseditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90a3a71e20e8f2eb1a98bcd4e4ef1313b54cc1f4761606799027000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comPointed pointer to null 2020-11-30 21:03:47 -0800a3a71e20e8f2eb1a98bcd4e4ef1313b54cc1f476Pointed pointer to nulleditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90b870ebc038e0a833569df1c9ae7e6abd945407151606853040000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes GNU bug differently to allow BFB results. 2020-12-01 12:04:00 -0800b870ebc038e0a833569df1c9ae7e6abd94540715Fixes GNU bug differently to allow BFB results.editcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eamcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eam528eec23059667c302953f4720feef258aa4daa11606873712000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comremove some of settings in ftype tests 2020-12-01 19:48:32 -0600528eec23059667c302953f4720feef258aa4daa1remove some of settings in ftype testseditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype2/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype0/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype4/user_nl_eameditcomponents/eam/cime_config/testdefs/testmods_dirs/eam/thetahy_ftype1/user_nl_eamcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commands7914f00ef19d21111676c49c424ea477ceae66d51606936738000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.commake bgc tests use theta 2020-12-02 13:18:58 -06007914f00ef19d21111676c49c424ea477ceae66d5make bgc tests use thetaeditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/bgcexp/shell_commandscomponents/elm/src/biogeophys/SoilHydrologyMod.F90components/elm/bld/CLMBuildNamelist.pmcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90components/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/elm/src/biogeophys/SoilHydrologyType.F90components/elm/bld/namelist_files/namelist_definition_clm4_5.xml43393e9c75067a9150db8b20e413a41406e8ca631607014900000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govChanges that address review comments Few *CLM* variables are changed to *ELM* 2020-12-03 09:01:40 -080043393e9c75067a9150db8b20e413a41406e8ca63Changes that address review commentseditcomponents/elm/src/biogeophys/SoilHydrologyMod.F90editcomponents/elm/src/biogeophys/SoilHydrologyType.F90editcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/src/biogeophys/HydrologyDrainageMod.F90editcomponents/elm/src/biogeophys/HydrologyNoDrainageMod.F90components/eam/src/dynamics/fv/dyn_grid.F90components/cam/src/chemistry/utils/input_data_utils.F90components/eam/src/cpl/atm_import_export.F90components/cam/src/utils/srf_field_check.F90components/eam/src/physics/cam/physpkg.F90components/eam/src/chemistry/utils/tracer_data.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/co2_data_flux.F90components/eam/src/physics/cam/co2_cycle.F90components/eam/src/physics/cam/vertical_diffusion.F90components/eam/src/chemistry/utils/aircraft_emit.F90components/eam/bld/build-namelist102f3b327c8e1ced7c8191d58b34c8d3aa0721a71607017100000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRebased again for cam->eam change(12/02/2020) Adds support for co2 vertical interpolation The code changes introduced via PR #2303 (hash on master 7fbec4f) facilitated horizontal interpolation but was missing the vertical interpolation. I have created a dummy state variable so that the interpolation routines can read interface heights from the state to enable vertical interpolation. co2 tracer can be enabled only if we add -co2_cycle to CAM_CONFIG_OPTS in env_build.xml file. To enable bi-linear interpolation, we also need to add -cppdefs -DCO2_BILIN_REGRID to CAM_CONFIG_OPTS in env_build.xml file. [BFB] - Bit-For-Bit Fixes a comment to better reflect the purpose of state variable [BFB] - Bit-For-Bit Data files on same grid as model: working for ne4,ne30 Some code changes for adding debug info is added in this commit. This code should be reverted back to original Adds error handling for different grids A commit to save changes before moving towards CAM implementation Working code with CESM codes Adds code to read aircraft co2 on native grid At this point, code reads aircraft data files on a native grid. We still need to add vertical interpolation and unit conversion code. Aircraft emissions also need to be added to the model state as tendency. Add in code draft for vertical interpolation and unit conversions to aircraft emissions forces time interpolation adds delta days to aircraft emission read init A commit with some debug print statements This can be deleted later Some changes after rebase adds some more missing changes after rebase Adds some build related files after rebase changes debug variable for aircraft emiss debug changes to ncdio_atm.F90, can be removed later A commit with some debug changes Removes some debugging code Most recent changes from Bryce workaround for 2d arrays some cleanup after 3rd rebase Cleanup - removes some debug statements Added back in code necessary to output aircraft emissions to tape; corrected dtime for aircraft emissions; added some clarifying comments 2020-12-03 09:38:20 -0800102f3b327c8e1ced7c8191d58b34c8d3aa0721a7Rebased again for cam->eam change(12/02/2020)editcomponents/eam/src/cpl/atm_import_export.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/vertical_diffusion.F90addcomponents/cam/src/chemistry/utils/input_data_utils.F90editcomponents/eam/src/physics/cam/co2_data_flux.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90editcomponents/eam/src/physics/cam/co2_cycle.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/src/chemistry/utils/tracer_data.F90editcomponents/eam/src/dynamics/fv/dyn_grid.F90addcomponents/cam/src/utils/srf_field_check.F90editcomponents/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/co2_data_flux.F90components/eam/src/chemistry/utils/aircraft_emit.F9095d15352fe696e44529daa7fa448117049eb6a7d1607021273000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfixed a typo and removed a comment 2020-12-03 10:47:53 -080095d15352fe696e44529daa7fa448117049eb6a7dfixed a typo and removed a commenteditcomponents/eam/src/physics/cam/co2_data_flux.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90.gitmodules67c5c8df2f2fd01a8fc01856bfba005bce8c8dce1607022983000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved references to "cam" in comments about submodule paths 2020-12-03 11:16:23 -080067c5c8df2f2fd01a8fc01856bfba005bce8c8dceRemoved references to "cam" in comments about submodule pathsedit.gitmodules.gitmodulesef090c4eaef1247054a879fd7730dff852ffb0e91607037532000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfixed typo and removed a reference to clm as well 2020-12-03 15:18:52 -0800ef090c4eaef1247054a879fd7730dff852ffb0e9fixed typo and removed a reference to clm as welledit.gitmodulescomponents/elm/.DS_Stored49f18a05ac768a7fe055145cd25559207b3ce431607060012000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves a file that was mistakenly added earlier 2020-12-03 21:33:32 -0800d49f18a05ac768a7fe055145cd25559207b3ce43Removes a file that was mistakenly added earlierdeletecomponents/elm/.DS_Storecomponents/eam/src/control/cam_history.F908018bce301f3c199026a73ac4bbfeab54a2a5b111607141655000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govInitialize mixing ratio when reading restarts Initialize mixing ratio for fields in the history list while reading data from restart files. Without this initialization the string can contain invalid values and result in the value (uninitialized/invalid value) being written out as field attributes for the variables in the EAM history files. 2020-12-04 22:14:15 -06008018bce301f3c199026a73ac4bbfeab54a2a5b11Initialize mixing ratio when reading restartseditcomponents/eam/src/control/cam_history.F90components/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_control.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xml63de644861d916e3eaaad91673f369201095bef41607363005000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves clm4_0 and clm5_0 from compset namelist 2020-12-07 09:43:25 -080063de644861d916e3eaaad91673f369201095bef4Removes clm4_0 and clm5_0 from compset namelisteditcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmlcomponents/elm/bld/config_files/config_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/use_cases/2000_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmlcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmlcomponents/elm/bld/namelist_files/namelist_defaults_usr_files.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850_control.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6LR_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmlcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6LR_control.xmlcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_transient.xmlcomponents/elm/cime_config/config_component.xmlcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6HR_control.xmlcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmlcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmlcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_CMIP6bgc_transient.xmlcomponents/elm/bld/configurecomponents/elm/bld/namelist_files/use_cases/1950_CMIP6HR_control.xml21a5e1bcea0cccfce92f7159bca09e3a949bc9321607363011000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the namelist build scripts - Removes clm4_0 and clm5_0 options - Changes clm4_5 to elm 2020-12-07 09:43:31 -080021a5e1bcea0cccfce92f7159bca09e3a949bc932Updates the namelist build scriptseditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6HR_control.xmleditcomponents/elm/bld/configureeditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6LR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_SCMIP6_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xmleditcomponents/elm/cime_config/config_component.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_glacierMEC_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_transient.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_usr_files.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1950_CMIP6LR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/2015-2100_SSP585_CMIP6bgc_transient.xmleditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/namelist_files/use_cases/2000_fsnowoptics_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2000_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_CMIP6bgc_control.xmleditcomponents/elm/bld/namelist_files/use_cases/1850_control.xmleditcomponents/elm/bld/namelist_files/use_cases/2010_CMIP6HR_control.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/20thC_CMIP6bgc_transient.xmleditcomponents/elm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xmleditcomponents/elm/bld/config_files/config_definition_clm4_5.xmlcomponents/elm/bld/configurecomponents/elm/bld/CLMBuildNamelist.pm3660928c694df0e1dffbb910bc9a09a20d97675e1607363017000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates indenting 2020-12-07 09:43:37 -08003660928c694df0e1dffbb910bc9a09a20d97675eUpdates indentingeditcomponents/elm/bld/configureeditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/config_files/config_definition_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/config_files/config_definition.xmlcomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/configurecomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlb17e48c8a6d9fd0a4a002fb881918000bbd8a3ac1607363024000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames xml files 2020-12-07 09:43:44 -0800b17e48c8a6d9fd0a4a002fb881918000bbd8a3acRenames xml filesdeletecomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmleditcomponents/elm/bld/configuredeletecomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmldeletecomponents/elm/bld/config_files/config_definition_clm4_5.xmladdcomponents/elm/bld/namelist_files/namelist_defaults.xmladdcomponents/elm/bld/config_files/config_definition.xmladdcomponents/elm/bld/namelist_files/namelist_definition.xmleditcomponents/elm/bld/CLMBuildNamelist.pmcomponents/elm/bld/ELMBuildNamelist.pmcomponents/elm/bld/build-namelistcomponents/elm/bld/CLMBuildNamelist.pm4b3f7afb51979ae4533527d80ddf20486f343e031607363048000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames builds perl script 2020-12-07 09:44:08 -08004b3f7afb51979ae4533527d80ddf20486f343e03Renames builds perl scriptaddcomponents/elm/bld/ELMBuildNamelist.pmdeletecomponents/elm/bld/CLMBuildNamelist.pmeditcomponents/elm/bld/build-namelistcomponents/elm/bld/test_build_namelist/t/test_lnd_frac.pmcomponents/elm/bld/unit_testers/xFail/wrapClmTests.plcomponents/elm/bld/test_build_namelist/t/test_vichydro.pmcomponents/elm/bld/unit_testers/xFail/expectedFail.pmcomponents/elm/bld/test_build_namelist/t/input/namelist_definition_clm4_5_test.xmlcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class.pmcomponents/elm/bld/unit_testers/NMLTest/CompFiles.pmcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/MethodInfo.pmcomponents/elm/bld/test_build_namelist/READMEcomponents/elm/bld/test_build_namelist/t/test_setup_cmdl_run_type.pmcomponents/elm/bld/unit_testers/xFail/expectedClmTestFails.xmlcomponents/elm/bld/test_build_namelist/perl5lib/Sub/Uplevel.pmcomponents/elm/bld/test_build_namelist/t/template_test_XXX.pmcomponents/elm/bld/test_build_namelist/perl5lib/MRO/Compat.pmcomponents/elm/bld/test_build_namelist/test_build_namelist.plcomponents/elm/bld/unit_testers/build-namelist_test.plcomponents/elm/bld/test_build_namelist/t/input/config_cache_clm4_5_test.xmlcomponents/elm/bld/unit_testers/myuser_nl_clmcomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/Load.pmcomponents/elm/bld/test_build_namelist/t/input/namelist_defaults_clm4_5_test.xmlcomponents/elm/bld/test_build_namelist/perl5lib/Test/Exception.pme50f60c2208673616e3a840a7e73ce0ad9821daa1607363055000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemove tests not used by ELM 2020-12-07 09:44:15 -0800e50f60c2208673616e3a840a7e73ce0ad9821daaRemove tests not used by ELMdeletecomponents/elm/bld/unit_testers/build-namelist_test.pldeletecomponents/elm/bld/unit_testers/xFail/expectedFail.pmdeletecomponents/elm/bld/unit_testers/xFail/wrapClmTests.pldeletecomponents/elm/bld/test_build_namelist/perl5lib/Sub/Uplevel.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Exception.pmdeletecomponents/elm/bld/test_build_namelist/t/input/namelist_definition_clm4_5_test.xmldeletecomponents/elm/bld/unit_testers/xFail/expectedClmTestFails.xmldeletecomponents/elm/bld/test_build_namelist/READMEdeletecomponents/elm/bld/test_build_namelist/t/test_setup_cmdl_run_type.pmdeletecomponents/elm/bld/test_build_namelist/t/test_vichydro.pmdeletecomponents/elm/bld/test_build_namelist/t/test_lnd_frac.pmdeletecomponents/elm/bld/test_build_namelist/t/input/namelist_defaults_clm4_5_test.xmldeletecomponents/elm/bld/unit_testers/myuser_nl_clmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/Load.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class.pmdeletecomponents/elm/bld/test_build_namelist/t/template_test_XXX.pmdeletecomponents/elm/bld/unit_testers/NMLTest/CompFiles.pmdeletecomponents/elm/bld/test_build_namelist/perl5lib/MRO/Compat.pmdeletecomponents/elm/bld/test_build_namelist/test_build_namelist.pldeletecomponents/elm/bld/test_build_namelist/perl5lib/Test/Class/MethodInfo.pmdeletecomponents/elm/bld/test_build_namelist/t/input/config_cache_clm4_5_test.xmlcomponents/elm/bld/config_files/clm_phys_vers.pm34d419b3e901d21b096b29a82980e00bbb84b3c51607363068000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves script to determine verion of the model 2020-12-07 09:44:28 -080034d419b3e901d21b096b29a82980e00bbb84b3c5Removes script to determine verion of the modeldeletecomponents/elm/bld/config_files/clm_phys_vers.pmcomponents/elm/bld/READMEcomponents/elm/bld/queryDefaultNamelist.plcomponents/elm/bld/listDefaultNamelist.plcomponents/elm/bld/namelist_files/namelist_defaults.xsl7c45e8117204030d178cdd6a9b7412eb4bd37cce1607363075000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRemoves clm4_0 2020-12-07 09:44:35 -08007c45e8117204030d178cdd6a9b7412eb4bd37cceRemoves clm4_0editcomponents/elm/bld/listDefaultNamelist.pleditcomponents/elm/bld/queryDefaultNamelist.pleditcomponents/elm/bld/namelist_files/namelist_defaults.xsleditcomponents/elm/bld/READMEcomponents/elm/cime_config/config_component.xmlcomponents/elm/cime_config/buildnml5b1b2bfc20e241d4ed048c20241f170e59eb18101607363195000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govRenames namelist options from CLM to ELM 2020-12-07 09:46:35 -08005b1b2bfc20e241d4ed048c20241f170e59eb1810Renames namelist options from CLM to ELMeditcomponents/elm/cime_config/config_component.xmleditcomponents/elm/cime_config/buildnmlcomponents/cam/src/chemistry/utils/input_data_utils.F90components/cam/src/utils/srf_field_check.F90components/eam/src/utils/srf_field_check.F90components/eam/src/chemistry/utils/input_data_utils.F901514243758e1c3e7322481e40fc272a96beacbe21607383316000http://carson.math.uwm.edu/jenkins/user/harr152harr152harr152@compy01.pnl.govMoved new files into the eam directory structure 2020-12-07 15:21:56 -08001514243758e1c3e7322481e40fc272a96beacbe2Moved new files into the eam directory structuredeletecomponents/cam/src/chemistry/utils/input_data_utils.F90addcomponents/eam/src/utils/srf_field_check.F90addcomponents/eam/src/chemistry/utils/input_data_utils.F90deletecomponents/cam/src/utils/srf_field_check.F90components/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/betr/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/drydepnomegan/shell_commandscomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/shell_commands866edde068f29df4615a261cc6324e98eaa6ea5f1607383728000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govFixes build options in few tests 2020-12-07 15:28:48 -0800866edde068f29df4615a261cc6324e98eaa6ea5fFixes build options in few testseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/betr/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/irrigOn_reduceOutput/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/drydepnomegan/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/USUMB/shell_commandseditcomponents/elm/cime_config/testdefs/testmods_dirs/elm/lulcc_sville/shell_commandscime_config/allactive/config_pesall.xmlcime_config/machines/config_machines.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_batch.xml98c8f2cd442c7766c76de5160e33454377eb5bdb1607396345000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd Chrysalis machine configuration 2020-12-07 20:59:05 -060098c8f2cd442c7766c76de5160e33454377eb5bdbAdd Chrysalis machine configurationeditcime_config/machines/config_batch.xmleditcime_config/allactive/config_pesall.xmleditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcime_config/machines/config_machines.xml73b54947c7f8da8c0ec3c50f07f60674358942cd1607397799000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd new Chrysalis modules after storage upgrade 2020-12-07 21:23:19 -060073b54947c7f8da8c0ec3c50f07f60674358942cdAdd new Chrysalis modules after storage upgradeeditcime_config/machines/config_machines.xmlcomponents/homme/src/theta-l/share/model_init_mod.F9093f6f357955b6450d60169dd7878eb78ee810db51607404177000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdd omp master to a section of code in init that would otherwise have a race condition. DEBUG builds would see the issue, but a chance could also happen without DEBUG. Also add omp barrier after the omp master section. [bfb] 2020-12-07 21:09:37 -080093f6f357955b6450d60169dd7878eb78ee810db5Add omp master to a section of code in init that would otherwise have a race condition.editcomponents/homme/src/theta-l/share/model_init_mod.F90components/homme/src/theta-l/share/model_init_mod.F904ba99e1b3870e57cc5bec78c4316ebeac9abb5d01607414546000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govMoved the shared nlev_tom variable initialization to be set only once by master thread. Also missed the "end" of master section -- omp end master 2020-12-08 00:02:26 -08004ba99e1b3870e57cc5bec78c4316ebeac9abb5d0Moved the shared nlev_tom variable initialization to be set only once by master thread.editcomponents/homme/src/theta-l/share/model_init_mod.F90components/eam/src/physics/cam/modal_aer_opt.F9064235f50cce6cf0d3d53e0f0bafc2388adc7e5bc1607452432000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govInit an array to zero. momaod(:ncol) = 0._r8 [bfb] 2020-12-08 10:33:52 -080064235f50cce6cf0d3d53e0f0bafc2388adc7e5bcInit an array to zero.editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/modal_aer_opt.F9073f127854607c9f8b84d4a968b1a9fd76dcbcbc51607454742000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govThere were 3 other arrays that should also be set to zero before use, but these are only used when compiled with MODAL_AERO_9MODE polyaod(:ncol) = 0._r8 protaod(:ncol) = 0._r8 lipaod(:ncol) = 0._r8 Should be bfb, but have not tested with MODAL_AERO_9MODE 2020-12-08 11:12:22 -080073f127854607c9f8b84d4a968b1a9fd76dcbcbc5There were 3 other arrays that should also be set to zero before use, but theseeditcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/modal_aer_opt.F902d609ced871835dace6e925e241533ff6b3b5c1b1607461769000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govMove where the AOD arrays are initialized to zero. My first commit had these in the wrong location. Also, remove some duplicate lines of codes that init same array. 2020-12-08 13:09:29 -08002d609ced871835dace6e925e241533ff6b3b5c1bMove where the AOD arrays are initialized to zero.editcomponents/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/aircraft_emit.F90b0e4f13dd51a1d57636968728b35728c0650d25e1607545079000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes some strings, all dev tests pass with PGI on Compy Except for the known fails 2020-12-09 12:17:59 -0800b0e4f13dd51a1d57636968728b35728c0650d25eFixes some strings, all dev tests pass with PGI on Compyeditcomponents/eam/src/chemistry/utils/aircraft_emit.F90components/eam/src/physics/cam/co2_data_flux.F90components/eam/src/chemistry/utils/aircraft_emit.F905481659fcb19093a2c511de469ad6ab94e32a7fa1607551421000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comConverts integers to logicals in two if conditions 2020-12-09 14:03:41 -08005481659fcb19093a2c511de469ad6ab94e32a7faConverts integers to logicals in two if conditionseditcomponents/eam/src/physics/cam/co2_data_flux.F90editcomponents/eam/src/chemistry/utils/aircraft_emit.F90components/mpas-seaice/driver/ice_comp_mct.F19db8d3a4643309a19dc8a1c732b90fc92e9a4ef1607568673000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduBug fix in sea ice coupling file to use the same freezing temperature as in the main MPAS-SeaIce code according to the flag 'mushy', 'linear_salt' or the default -1.8 Celsius. 2020-12-09 19:51:13 -070019db8d3a4643309a19dc8a1c732b90fc92e9a4efBug fix in sea ice coupling file to use the same freezing temperature aseditcomponents/mpas-seaice/driver/ice_comp_mct.Fcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlfba6e6956faabd3a6281542307932ab689a2ee0e1607577380000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduSwitch on high-frequncy coupling in sea ice at 10 iterations This PR is part of a final set of changes to E3SM Version 2 polar changes, and matches a PR from MPAS-SeaIce recently accepted into E3SM Master. 2020-12-09 22:16:20 -0700fba6e6956faabd3a6281542307932ab689a2ee0eSwitch on high-frequncy coupling in sea ice at 10 iterationseditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/elm/src/dyn_subgrid/dynSubgridDriverMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/cpl/lnd_import_export.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/biogeophys/FrictionVelocityType.F90components/elm/src/main/controlMod.F90components/elm/src/data_types/CNStateType.F90d8106565196246d97ac8d744427af6db14931c871607633886000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@pop-os.localdomainconflict resolution on cherry-pick 2020-12-10 15:58:06 -0500d8106565196246d97ac8d744427af6db14931c87conflict resolution on cherry-pickeditcomponents/elm/src/dyn_subgrid/dynSubgridDriverMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/cpl/lnd_import_export.F90editcomponents/elm/src/biogeophys/FrictionVelocityType.F90editcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/main/controlMod.F90components/elm/src/main/clmfates_interfaceMod.F90components/elm/src/biogeophys/ActiveLayerMod.F903c87f83173e852da24f09cb7ad7f0f2efb169b4e1607634574000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@pop-os.localdomainresolved conflicts on cherry-pick 2020-12-10 16:09:34 -05003c87f83173e852da24f09cb7ad7f0f2efb169b4eresolved conflicts on cherry-pickeditcomponents/elm/src/main/clmfates_interfaceMod.F90editcomponents/elm/src/biogeophys/ActiveLayerMod.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmla3ac1daecfede287998ddd2caf3a593f77c3db3e1607660603000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govSupport for ne30np4pg2 in ELM - Adds mapping files for ne30np4pg2 - Adds surface dataset for ne30np4pg2 for 1850 and 2000 [BFB] 2020-12-10 20:23:23 -0800a3ac1daecfede287998ddd2caf3a593f77c3db3eSupport for ne30np4pg2 in ELMeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/stats_zt_module.F90remap/make_climo.pycomponents/cam/src/physics/clubb/output_netcdf.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/parameters_tunable.F90components/cam/src/physics/clubb/precipitation_fraction.F90components/cam/src/physics/clubb/stat_file_module.F90components/cam/src/physics/silhs/silhs_api_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/parameter_indices.F90postprocessing/run_e3sm_diags.pycomponents/cam/src/physics/clubb/error_code.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/surface_varnce_module.F90components/cam/src/physics/silhs/transform_to_pdf_module.F90components/cam/src/physics/clubb/stats_clubb_utilities.F90components/cam/bld/namelist_files/namelist_definition.xmlcomponents/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/cam/clubb_intr.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/clubb/stats_type_utilities.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90remap/remap_ne30.cshcomponents/cam/src/physics/clubb/clubb_api_module.F90components/cam/src/physics/clubb/model_flags.F90components/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90components/cam/src/physics/clubb/numerical_check.F90components/cam/src/physics/clubb/advance_helper_module.F90components/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/cam/src/physics/silhs/output_2D_samples_module.F90components/cam/src/physics/clubb/output_grads.F90components/cam/src/physics/clubb/stats_sfc_module.F90d39431307708918feda15aaa250260b32ccbc6e91607716716000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit upgrades the version of CLUBB and SILHS found in Brian's NGD CLUBB-SILHS branch to version 80c85d3 of the CLUBB master. This commit does contain a couple of small changes not found in the CLUBB repo, including a bug fix that was not found in version 80c85d3 of CLUBB. This means that another version of the CLUBB master (that contains the bug fix being applied here) will need to be upgraded to in order to keep everything consistent between CLUBB and E3SM. 2020-12-11 13:58:36 -0600d39431307708918feda15aaa250260b32ccbc6e9This commit upgrades the version of CLUBB and SILHS found in Brian's NGDeditcomponents/cam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/cam/src/physics/clubb/stats_sfc_module.F90editremap/remap_ne30.csheditcomponents/cam/src/physics/silhs/silhs_api_module.F90editcomponents/cam/src/physics/clubb/clubb_api_module.F90editcomponents/cam/src/physics/clubb/error_code.F90editcomponents/cam/src/physics/clubb/model_flags.F90editcomponents/cam/src/physics/clubb/parameters_tunable.F90editcomponents/cam/src/physics/clubb/output_netcdf.F90editcomponents/cam/src/physics/clubb/stats_type_utilities.F90editcomponents/cam/src/physics/cam/clubb_intr.F90editcomponents/cam/src/physics/clubb/numerical_check.F90editcomponents/cam/src/physics/clubb/stats_variables.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/silhs/transform_to_pdf_module.F90editpostprocessing/run_e3sm_diags.pyeditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/silhs/output_2D_samples_module.F90editcomponents/cam/src/physics/clubb/stats_zt_module.F90editcomponents/cam/src/physics/clubb/output_grads.F90editcomponents/cam/src/physics/clubb/surface_varnce_module.F90editcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/clubb/advance_helper_module.F90editcomponents/cam/src/physics/clubb/precipitation_fraction.F90editcomponents/cam/bld/namelist_files/namelist_definition.xmleditcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/version_clubb_core.txteditremap/make_climo.pyeditcomponents/cam/src/physics/clubb/parameter_indices.F90editcomponents/cam/src/physics/clubb/stat_file_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/silhs/latin_hypercube_driver_module.F90components/elm/src/biogeochem/EcosystemDynMod.F90581c3e82f5f5beee61b859e1114e48eb4039cb7b1607720039000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comslightly modified logic on FATES and fixation 2020-12-11 15:53:59 -0500581c3e82f5f5beee61b859e1114e48eb4039cb7bslightly modified logic on FATES and fixationeditcomponents/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/biogeochem/AllocationMod.F90components/elm/src/biogeochem/AllocationMod.F90_newac6a6ce809dad22ed9767041c5a5947fb2deb58b1607721666000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govReverting to older and simplified version of allocation before attempting to merge with master. 2020-12-11 16:21:06 -0500ac6a6ce809dad22ed9767041c5a5947fb2deb58bReverting to older and simplified version of allocation before attempting to merge with master.addcomponents/elm/src/biogeochem/AllocationMod.F90_neweditcomponents/elm/src/biogeochem/AllocationMod.F90cime_config/config_grids.xmlece3cac23eecf2e934f7e983ab59a888f40cced91607723376000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd grid support for the new ne30np4.pg2 ELM files 2020-12-11 15:49:36 -0600ece3cac23eecf2e934f7e983ab59a888f40cced9Add grid support for the new ne30np4.pg2 ELM fileseditcime_config/config_grids.xmlcomponents/homme/src/sweqx/sweq_mod.F90components/homme/src/test_mod.F90components/homme/src/sweqx/init_mod.F90components/homme/test_execs/theta-l-nlev300-native/CMakeLists.txtcomponents/homme/test_execs/preqx-nlev100-native/CMakeLists.txtcomponents/homme/src/share/physical_constants.F90components/homme/test_execs/theta-l-nlev20-native/CMakeLists.txtcomponents/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/sweqx-dbvor.cmakecomponents/homme/test_execs/theta-l-nlev128-native/CMakeLists.txtcomponents/homme/test/reg_test/run_tests/thetah-nhgw.cmakecomponents/homme/test/reg_test/run_tests/thetanh-nhgw.cmakecomponents/homme/test/reg_test/run_tests/thetah-nhgw-slice.cmakecomponents/homme/src/test_src/dry_planar.F90components/homme/src/share/parallel_mod.F90components/homme/test_execs/preqx-nlev10-native/CMakeLists.txtcomponents/homme/src/share/dimensions_mod.F90components/homme/test/reg_test/namelists/thetanh-nhgw.nlcomponents/homme/src/sweqx/advance_mod.F90components/homme/test_execs/preqx-nlev20-native/CMakeLists.txtcomponents/homme/src/share/prim_driver_base.F90components/homme/test_execs/theta-l-nlev256-native/CMakeLists.txtcomponents/homme/src/share/planar_mesh_mod.F90components/homme/test/reg_test/run_tests/preqx-nhgw-slice.cmakecomponents/homme/src/share/unit_tests_mod.F90components/homme/test/reg_test/namelists/preqx-nhgw.nlcomponents/homme/src/share/element_mod.F90components/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/homme/test_execs/theta-l-nlev30-native/CMakeLists.txtcomponents/homme/src/share/viscosity_base.F90components/homme/test_execs/swtcC/CMakeLists.txtcomponents/homme/test_execs/theta-l-nlev200-native/CMakeLists.txtcomponents/homme/src/sweqx/shallow_water_mod.F90components/homme/test_execs/preqx-nlev200-native/CMakeLists.txtcomponents/homme/src/share/cube_mod.F90components/homme/src/sweqx/viscosity_mod.F90components/homme/src/share/planar_mod.F90components/homme/test/reg_test/namelists/thetah-nhgw.nlcomponents/homme/test/reg_test/run_tests/test-list.cmakecomponents/homme/test_execs/theta-l-nlev64-native/CMakeLists.txtcomponents/homme/src/sweqx/shal_movie_mod.F90components/homme/test/reg_test/run_tests/preqx-nhgw.cmakecomponents/homme/test_execs/theta-l-nlev140-native/CMakeLists.txtcomponents/homme/src/share/namelist_mod.F90components/homme/src/share/geometry_mod.F90components/homme/src/prim_movie_mod.F90components/homme/test/reg_test/namelists/sweqx-dbvor.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlcomponents/homme/src/sweqx/CMakeLists.txtcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nlcomponents/homme/test/reg_test/run_tests/thetanh-nhgw-slice.cmakecomponents/homme/test_execs/theta-l-nlev150-native/CMakeLists.txtcomponents/homme/src/share/global_norms_mod.F90components/homme/test_execs/preqx-nlev140-native/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txtcomponents/homme/src/share/derivative_mod_base.F90components/homme/test_execs/theta-l-nlev100-native/CMakeLists.txtcomponents/homme/src/share/spacecurve_mod.F90components/homme/test_execs/theta-l-nlev10-native/CMakeLists.txtcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nlcomponents/homme/src/test_src/moist_planar.F90f8e218a1210db159454acf1a0653d6ccf61d4b4f1607726152000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govinitial start of whitespace fix 2020-12-11 15:35:52 -0700f8e218a1210db159454acf1a0653d6ccf61d4b4finitial start of whitespace fixaddcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nladdcomponents/homme/src/share/planar_mod.F90editcomponents/homme/src/share/derivative_mod_base.F90addcomponents/homme/test_execs/preqx-nlev200-native/CMakeLists.txtaddcomponents/homme/src/test_src/dry_planar.F90addcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nladdcomponents/homme/test/reg_test/namelists/preqx-nhgw.nleditcomponents/homme/test/reg_test/run_tests/test-list.cmakeeditcomponents/homme/src/theta-l_kokkos/CMakeLists.txtaddcomponents/homme/test_execs/swtcC/CMakeLists.txteditcomponents/homme/src/sweqx/shal_movie_mod.F90editcomponents/homme/src/share/parallel_mod.F90addcomponents/homme/test_execs/theta-l-nlev256-native/CMakeLists.txtaddcomponents/homme/src/share/geometry_mod.F90editcomponents/homme/src/share/viscosity_base.F90addcomponents/homme/test_execs/preqx-nlev100-native/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev30-native/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev100-native/CMakeLists.txtaddcomponents/homme/cmake/machineFiles/ubuntu1804.cmakeeditcomponents/homme/src/share/physical_constants.F90addcomponents/homme/test_execs/theta-l-nlev128-native/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev300-native/CMakeLists.txteditcomponents/homme/src/sweqx/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev200-native/CMakeLists.txteditcomponents/homme/src/share/element_mod.F90addcomponents/homme/test_execs/theta-l-nlev64-native/CMakeLists.txtaddcomponents/homme/test/reg_test/run_tests/sweqx-dbvor.cmakeaddcomponents/homme/test/reg_test/run_tests/thetah-nhgw.cmakeaddcomponents/homme/test/reg_test/run_tests/preqx-nhgw-slice.cmakeeditcomponents/homme/src/prim_movie_mod.F90editcomponents/homme/src/share/spacecurve_mod.F90addcomponents/homme/test_execs/preqx-nlev140-native/CMakeLists.txtaddcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nleditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/src/share/cube_mod.F90addcomponents/homme/test/reg_test/run_tests/thetanh-nhgw-slice.cmakeaddcomponents/homme/test_execs/theta-l-nlev10-native/CMakeLists.txtaddcomponents/homme/test/reg_test/run_tests/thetanh-nhgw.cmakeeditcomponents/homme/src/sweqx/advance_mod.F90addcomponents/homme/src/share/planar_mesh_mod.F90addcomponents/homme/test/reg_test/run_tests/preqx-nhgw.cmakeeditcomponents/homme/src/share/global_norms_mod.F90editcomponents/homme/src/sweqx/sweq_mod.F90addcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nleditcomponents/homme/src/share/prim_driver_base.F90addcomponents/homme/test_execs/theta-l-nlev150-native/CMakeLists.txtaddcomponents/homme/test/reg_test/namelists/thetah-nhgw.nleditcomponents/homme/src/sweqx/shallow_water_mod.F90addcomponents/homme/test/reg_test/run_tests/thetah-nhgw-slice.cmakeaddcomponents/homme/test_execs/preqx-nlev10-native/CMakeLists.txtaddcomponents/homme/test_execs/theta-l-nlev140-native/CMakeLists.txteditcomponents/homme/src/share/dimensions_mod.F90addcomponents/homme/test_execs/theta-l-nlev20-native/CMakeLists.txteditcomponents/homme/test_execs/preqx-nlev20-native/CMakeLists.txteditcomponents/homme/src/share/unit_tests_mod.F90addcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nleditcomponents/homme/src/share/namelist_mod.F90editcomponents/homme/src/sweqx/viscosity_mod.F90addcomponents/homme/src/test_src/moist_planar.F90editcomponents/homme/src/test_mod.F90editcomponents/homme/src/sweqx/init_mod.F90components/homme/src/common_movie_mod.F90components/homme/src/preqx_kokkos/CMakeLists.txt770ef7745a540a94b4817123e21436853145f0fd1607726816000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govdoes this work? 2020-12-11 15:46:56 -0700770ef7745a540a94b4817123e21436853145f0fddoes this work?editcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/src/common_movie_mod.F90components/homme/src/share/namelist_mod.F90components/homme/src/share/control_mod.F90components/homme/src/share/global_norms_mod.F90components/homme/src/share/cube_mod.F90components/homme/src/share/derivative_mod_base.F90e64b02d0f16367d4cbc7e0cbc69338871eacc7d71607727088000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govseems to work 2020-12-11 15:51:28 -0700e64b02d0f16367d4cbc7e0cbc69338871eacc7d7seems to workeditcomponents/homme/src/share/namelist_mod.F90editcomponents/homme/src/share/control_mod.F90editcomponents/homme/src/share/cube_mod.F90editcomponents/homme/src/share/derivative_mod_base.F90editcomponents/homme/src/share/global_norms_mod.F90components/homme/src/share/prim_driver_base.F90components/homme/src/share/unit_tests_mod.F90components/homme/src/share/viscosity_base.F90f39583db017a68570d0e88fb861817eb1dacae891607727477000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govalmost there 2020-12-11 15:57:57 -0700f39583db017a68570d0e88fb861817eb1dacae89almost thereeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/share/viscosity_base.F90editcomponents/homme/src/share/unit_tests_mod.F90components/homme/src/sweqx/init_mod.F90components/homme/src/sweqx/shallow_water_mod.F90components/homme/src/sweqx/sweq_mod.F90components/homme/src/sweqx/shal_movie_mod.F90347cf46aafe9262d4267e8beb0ee42bc531634711607728193000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govdone! 2020-12-11 16:09:53 -0700347cf46aafe9262d4267e8beb0ee42bc53163471done!editcomponents/homme/src/sweqx/shallow_water_mod.F90editcomponents/homme/src/sweqx/sweq_mod.F90editcomponents/homme/src/sweqx/shal_movie_mod.F90editcomponents/homme/src/sweqx/init_mod.F90components/elm/src/main/controlMod.F90ad17f8dcc3a23b986d98dd542adc8e5839fd056a1607728515000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfixed broadcast order of use_fates 2020-12-11 18:15:15 -0500ad17f8dcc3a23b986d98dd542adc8e5839fd056afixed broadcast order of use_fateseditcomponents/elm/src/main/controlMod.F90components/homme/src/share/global_norms_mod.F90components/homme/cmake/machineFiles/ubuntu1804.cmakef0c8e9b66621c1598462e2eb1fcfdc1d33dc07571607732133000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govfixes for global norms mod and C++/Kokkos 2020-12-11 17:15:33 -0700f0c8e9b66621c1598462e2eb1fcfdc1d33dc0757fixes for global norms mod and C++/Kokkoseditcomponents/homme/src/share/global_norms_mod.F90editcomponents/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/homme/src/sweqx/shal_movie_mod.F90dd00407ef1bcc55ef26c7580a790e1973697b77e1607732425000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govshallow water fix 2020-12-11 17:20:25 -0700dd00407ef1bcc55ef26c7580a790e1973697b77eshallow water fixeditcomponents/homme/src/sweqx/shal_movie_mod.F90cime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmlfe27b5b6111b54061ca153be968504fbe9aba4ff1607734323000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd GNU modules 2020-12-11 18:52:03 -0600fe27b5b6111b54061ca153be968504fbe9aba4ffAdd GNU moduleseditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/elm/src/external_models/fates684e4f3cf7367e89a26293c974aa211ce95b61021607743009000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfates api 14 2020-12-11 19:16:49 -0800684e4f3cf7367e89a26293c974aa211ce95b6102fates api 14editcomponents/elm/src/external_models/fatescomponents/cam/src/physics/silhs/version_silhs.txtcomponents/cam/src/physics/clubb/stats_zt_module.F90components/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/silhs/parameters_silhs.F90components/cam/src/physics/clubb/stats_variables.F90components/cam/src/physics/clubb/advance_xp3_module.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90components/cam/src/physics/clubb/version_clubb_core.txtcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90f4a319aaaf393f4ddb939d230ca9be115e4fbdb41607834650000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB-SILHS found in UWM's NGD E3SM-CLUBB-SILHS code to CLUBB-SILHS master version f926963, dated December 10, 2020. Now raise a glass of MGD to toast our NGD! 2020-12-12 22:44:10 -0600f4a319aaaf393f4ddb939d230ca9be115e4fbdb4I updated the version of CLUBB-SILHS found in UWM's NGD E3SM-CLUBB-SILHSeditcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/stats_zt_module.F90editcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/version_clubb_core.txteditcomponents/cam/src/physics/silhs/parameters_silhs.F90editcomponents/cam/src/physics/clubb/advance_xp3_module.F90editrun_silhs_anvil_gust.csheditcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/stats_variables.F90components/homme/src/theta-l_kokkos/CMakeLists.txtcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/src/preqx_kokkos/CMakeLists.txtcomponents/homme/test_execs/CMakeLists.txt21efa330b0ede486898ccc6e1011f288c7169af91607840883000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing _kokkos builds 2020-12-13 00:28:03 -060021efa330b0ede486898ccc6e1011f288c7169af9fixing _kokkos buildseditcomponents/homme/src/preqx_kokkos/CMakeLists.txteditcomponents/homme/src/theta-l_kokkos/CMakeLists.txteditcomponents/homme/test_execs/CMakeLists.txteditcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/eam/src/chemistry/utils/modal_aero_wateruptake.F90fe242f0dfc183e18a97fb4970c6c1c875b81439b1607895650000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes compute wetdens logic 2020-12-13 13:40:50 -0800fe242f0dfc183e18a97fb4970c6c1c875b81439bFixes compute wetdens logiceditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90cime9e8524c7e020fc049e192ccfb333250a532f213f1607977670000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdvance cime to include GPTL process id update 2020-12-14 14:27:50 -06009e8524c7e020fc049e192ccfb333250a532f213fAdvance cime to include GPTL process id updateeditcimecime_config/machines/config_compilers.xmlcime_config/machines/config_batch.xmlcime_config/machines/config_machines.xml7dff30487883a8009e8e9001daedf185f46d66351607982373000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRename LCRC paths from acme to e3sm and clean up 2020-12-14 15:46:13 -06007dff30487883a8009e8e9001daedf185f46d6635Rename LCRC paths from acme to e3sm and clean upeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_batch.xmleditcime_config/machines/config_machines.xmlcomponents/elm/src/main/elm_driver.F906ec4c6f601efb7cad25a654ee23c3ffe8c80e3211607994759000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates cnp, minor fix to fire and n/p dep interpolations. 2020-12-14 20:12:39 -05006ec4c6f601efb7cad25a654ee23c3ffe8c80e321fates cnp, minor fix to fire and n/p dep interpolations.editcomponents/elm/src/main/elm_driver.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcime_config/tests.pycomponents/elm/src/biogeochem/SoilLittDecompMod.F90components/elm/src/biogeochem/VerticalProfileMod.F90components/elm/src/biogeochem/EcosystemDynMod.F90components/elm/src/main/elmfates_interfaceMod.F9049dda922a83ce4812465f895376255c79053cd371608046790000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comFATES API 14 fixes 2020-12-15 07:39:50 -080049dda922a83ce4812465f895376255c79053cd37FATES API 14 fixeseditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/biogeochem/SoilLittDecompMod.F90editcime_config/tests.pyeditcomponents/elm/src/biogeochem/VerticalProfileMod.F90components/mpas-sourceec73814a252351648a2ba9f6b7aeff7151d22a151608049191000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Add diagnostics module for GPU performance 2020-12-15 09:19:51 -0700ec73814a252351648a2ba9f6b7aeff7151d22a15update mpas-source: Add diagnostics module for GPU performanceeditcomponents/mpas-sourcecomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/test_execs/thetal_kokkos_ut/hv_interface.F90components/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90components/homme/cmake/machineFiles/ubuntu1804.cmakecomponents/homme/cmake/machineFiles/ubuntu1804-bfb.cmakea51d996f97295f4c7e60d8beffe24fa7e997977f1608057834000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govUnit testing fixes? 2020-12-15 11:43:54 -0700a51d996f97295f4c7e60d8beffe24fa7e997977fUnit testing fixes?editcomponents/homme/test_execs/thetal_kokkos_ut/hv_interface.F90editcomponents/homme/cmake/machineFiles/ubuntu1804.cmakeaddcomponents/homme/cmake/machineFiles/ubuntu1804-bfb.cmakeeditcomponents/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90editcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/crm_output_module.F90components/eam/bld/configurecomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_input_module.F90components/eam/src/physics/crm/physpkg.F904e25446633d39c178e66349ee73583ea96021bb71608063305000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comCleaned up Convective Variance Transport This implements the bulk variance transport from the prototype branch without most of the experimental modifications. Only the fortran verison is implemented here to act as a baseline for the C++ porting. modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_input_module.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/physpkg.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 new file: components/eam/src/physics/crm/sam/crm_variance_transport.F90 2020-12-15 15:15:05 -05004e25446633d39c178e66349ee73583ea96021bb7Cleaned up Convective Variance Transporteditcomponents/eam/src/physics/crm/physpkg.F90editcomponents/eam/src/physics/crm/crm_input_module.F90addcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/bld/configureeditcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/post_timeloop.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/bld/configurecomponents/eam/src/physics/crm/samxx/timeloop.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.hea32e1f70128b313de3d231ebfadee45c4c2d6ca1608063306000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comInitial C++ port of CVT also includes bug fixes for fortran CVT. C++ port has a bug that is causing a seg fault. modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp new file: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp new file: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.h modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.h modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.h modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-15 15:15:06 -0500ea32e1f70128b313de3d231ebfadee45c4c2d6caInitial C++ port of CVTeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.heditcomponents/eam/src/physics/crm/samxx/timeloop.haddcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/bld/configureeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90addcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.heditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cpp31d48cb0cde5b876707e7eb47e62d86ea12ec9061608063306000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comC++ VT bug fixes modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-15 15:15:06 -050031d48cb0cde5b876707e7eb47e62d86ea12ec906C++ VT bug fixeseditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90cime_config/machines/config_machines.xml1f11795ab9a05557ea352749f5e1c43bc631ca341608063307000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comVT Bug fix and summit config adjustment for PGI modified: cime_config/machines/config_machines.xml modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 2020-12-15 15:15:07 -05001f11795ab9a05557ea352749f5e1c43bc631ca34VT Bug fix and summit config adjustment for PGIeditcime_config/machines/config_machines.xmleditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/elm/src/data_types/CNStateType.F904ef7ddfdd52ca94a060aa16b9b3541172ecd9f8d1608146963000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comFATES coupling, temporarily disabling SOIL_ORDER read-ins when fates is on, due to lack of data in the 4x5 surfacefile. 2020-12-16 11:29:23 -08004ef7ddfdd52ca94a060aa16b9b3541172ecd9f8dFATES coupling, temporarily disabling SOIL_ORDER read-ins when fates is on, due to lack of data in the 4x5 surfacefile.editcomponents/elm/src/data_types/CNStateType.F90components/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/lnd2atmMod.F90d6dc5527649b92bf01a36c7b3888fa1e97cc58e21608152245000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfates api 14 cnp p1, nee coupling fix and comments fix 2020-12-16 12:57:25 -0800d6dc5527649b92bf01a36c7b3888fa1e97cc58e2fates api 14 cnp p1, nee coupling fix and comments fixeditcomponents/elm/src/main/lnd2atmMod.F90editcomponents/elm/src/main/elmfates_interfaceMod.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp525b2e757f4a7d683ee44b4d9143ea65b976df5a1608162354000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMinor VT updates modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-16 18:45:54 -0500525b2e757f4a7d683ee44b4d9143ea65b976df5aMinor VT updateseditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/elm/src/main/elmfates_interfaceMod.F90440d503bc9b8d3bacff966c0de029cbfdc2411aa1608163600000http://carson.math.uwm.edu/jenkins/user/glemieuxglemieuxglemieux@users.noreply.github.compass moisture and temp scalars from ColumnDataType to FATES 2020-12-16 16:06:40 -0800440d503bc9b8d3bacff966c0de029cbfdc2411aapass moisture and temp scalars from ColumnDataType to FATESeditcomponents/elm/src/main/elmfates_interfaceMod.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/bld/configurecomponents/eam/src/physics/crm/crm_input_module.F90cc7013dbf29d57d3af83c9b43f0bd65fe464650b1608163618000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comChange MMF variance transport naming convention modified: components/eam/bld/config_files/definition.xml modified: components/eam/bld/configure modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_input_module.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-16 19:06:58 -0500cc7013dbf29d57d3af83c9b43f0bd65fe464650bChange MMF variance transport naming conventioneditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_input_module.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/bld/configureeditcomponents/eam/src/physics/crm/crm_history.F90externals/scorpio1b25a4195f60e931b3426814d3fa0e49b5d99c4d1608219518000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio v1.1.5 This release includes, * Fix for truncated strings written out using pio_put_var * Performance improvements for the ADIOS conversion tool * Fix for asserts in debug builds when non-NULL starts/counts are used for writing out scalar variables 2020-12-17 09:38:38 -06001b25a4195f60e931b3426814d3fa0e49b5d99c4dUpdating to Scorpio v1.1.5editexternals/scorpiocime_config/tests.pyc15f7fb2622ec7a69019afd8f4d29bdab8da74f51608220789000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comfixed a typo in the fates test list 2020-12-17 07:59:49 -0800c15f7fb2622ec7a69019afd8f4d29bdab8da74f5fixed a typo in the fates test listeditcime_config/tests.pycomponents/cam/src/physics/clubb/advance_clubb_core_module.F90components/cam/src/physics/silhs/version_silhs.txtremap/make_climo.pycomponents/cam/src/physics/clubb/advance_xp3_module.F90run_silhs_anvil_gust.cshcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90remap/remap_ne30.cshcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90components/cam/src/physics/clubb/stats_zm_module.F90components/cam/src/physics/clubb/advance_xm_wpxp_module.F90postprocessing/run_e3sm_diags.pycomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90components/cam/src/physics/clubb/version_clubb_core.txt2eaa4c2f75223aa9c5e47bd66bd605313f7fbca41608223332000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB-SILHS in the NGD E3SM-CLUBB-SILHS branch to CLUBB-SILHS version a62f284 (from the CLUBB master), dated December 16, 2020. 2020-12-17 10:42:12 -06002eaa4c2f75223aa9c5e47bd66bd605313f7fbca4I updated the version of CLUBB-SILHS in the NGD E3SM-CLUBB-SILHSeditremap/remap_ne30.csheditcomponents/cam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/cam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/cam/src/physics/clubb/advance_xp3_module.F90editcomponents/cam/src/physics/clubb/stats_zm_module.F90editremap/make_climo.pyeditcomponents/cam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/cam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/cam/src/physics/clubb/version_clubb_core.txteditpostprocessing/run_e3sm_diags.pyeditcomponents/cam/src/physics/silhs/version_silhs.txteditcomponents/cam/src/physics/clubb/advance_xm_wpxp_module.F90editrun_silhs_anvil_gust.cshcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/sam/setperturb.F90components/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/setperturb.cpp689661c9ba320fd39d7b7c833e9e2a9e5ad2b0ac1608230123000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comFix PRNG for setperturb in SAM++ modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/sam/setperturb.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2020-12-17 13:35:23 -0500689661c9ba320fd39d7b7c833e9e2a9e5ad2b0acFix PRNG for setperturb in SAM++editcomponents/eam/src/physics/crm/sam/setperturb.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/setperturb.cppcomponents/mpas-source5424db3057378b0b965037ac3c5eb51cda2698871608235165000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: update seaice with ocean surface temperature bug fix 2020-12-17 13:59:25 -06005424db3057378b0b965037ac3c5eb51cda269887Update mpas-source: update seaice with ocean surface temperature bug fixeditcomponents/mpas-source.circleci/run.sh.circleci/config.yml.circleci/checkout.sh.circleci/setup.shbcb54a3ad81923eeb29205ef582b780fff7e59911608242455000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduAdd Circle CI test 2020-12-17 16:00:55 -0600bcb54a3ad81923eeb29205ef582b780fff7e5991Add Circle CI testadd.circleci/setup.shadd.circleci/config.ymladd.circleci/run.shadd.circleci/checkout.shcomponents/eam/src/physics/crm/samxx/pre_timeloop.cpp481fbd4fb6264bdb27142d0f136a301e3381dacf1608250890000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comBug fix for crashing SAM++ VT cases modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp 2020-12-17 19:21:30 -0500481fbd4fb6264bdb27142d0f136a301e3381dacfBug fix for crashing SAM++ VT caseseditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/crm_output_module.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F9025aa4621213c8c4736f8144feef60efe27a7c1851608251006000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd history variables for large-scale VT forcing modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2020-12-17 19:23:26 -050025aa4621213c8c4736f8144feef60efe27a7c185Add history variables for large-scale VT forcingeditcomponents/eam/src/physics/crm/crm_history.F90editcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90c005131ee0c948513b4b973e7d23ca97ff6d59631608276506000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comfix for gnu compiler 2020-12-18 01:28:26 -0600c005131ee0c948513b4b973e7d23ca97ff6d5963fix for gnu compilereditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime_config/allactive/config_pesall.xmld79b90e0435d0ca62c0203dd090a786b4a7492301608316048000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd pelayouts for e3sm_prod WC case 2020-12-18 12:27:28 -0600d79b90e0435d0ca62c0203dd090a786b4a749230Add pelayouts for e3sm_prod WC caseeditcime_config/allactive/config_pesall.xmlcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F9084b599fe4eacebaec876e2ce67bad5a29f24a2ed1608418569000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes a threading issue 2020-12-19 16:56:09 -060084b599fe4eacebaec876e2ce67bad5a29f24a2edFixes a threading issueeditcomponents/eam/src/chemistry/utils/modal_aero_wateruptake.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/chemistry/utils/modal_aero_calcsize.F900fa5439b0f8b27f865813092cfd8cc9fc02f503a1608429442000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comMinor cleanup 2020-12-19 19:57:22 -06000fa5439b0f8b27f865813092cfd8cc9fc02f503aMinor cleanupeditcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime_config/machines/Depends.compy.pgi.cmake9fe252957a0adbb6829ae7b7fcb4b0b66c9631681608497278000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comChange optimizations of modal_aero_calcsize.F90 to -O1 for Compy's PGI In prepration for the PR which refactors calcsize, modal_aero_calcsize.F90 needs to be compiled with level 1 optimizations (-O1). This applies only to the PGI compiler. GNU and Intel work fine with the default optimizations. Further investigations show that if we use just the "-nofma" flag (no "fused multiply and add" optimization), the results stay BFB. "-O1" optimizations implies "-nofma", so compiling with -O1 is also sufficient for maintaing BFB answers with the PGI compiler. [Non-BFB] for compy's PGI compiler only 2020-12-20 12:47:58 -08009fe252957a0adbb6829ae7b7fcb4b0b66c963168Change optimizations of modal_aero_calcsize.F90 to -O1 for Compy's PGIeditcime_config/machines/Depends.compy.pgi.cmakecime_config/machines/config_machines.xml70e2cfef12dc300f280a852e3f06aa35606d1e7b1608580274000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govReplace module removes with module swaps on Theta 2020-12-21 19:51:14 +000070e2cfef12dc300f280a852e3f06aa35606d1e7bReplace module removes with module swaps on Thetaeditcime_config/machines/config_machines.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml9faea849b4c3a7f9fe108ea3c76a4839952ef4de1608580939000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comChanges ocean defaults to be consistent with WC v2 2020-12-21 14:02:19 -06009faea849b4c3a7f9fe108ea3c76a4839952ef4deChanges ocean defaults to be consistent with WC v2editcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml0e73978ce9db7d6fe9cf2dd02e17d5fb09d0c3291608581009000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comenables MOC am 2020-12-21 14:03:29 -06000e73978ce9db7d6fe9cf2dd02e17d5fb09d0c329enables MOC ameditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/machines/config_machines.xml0ce1e8e5896ed0045931d19ef947649e91c1cfb51608596847000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate paths and module loads on Theta 2020-12-22 00:27:27 +00000ce1e8e5896ed0045931d19ef947649e91c1cfb5Update paths and module loads on Thetaeditcime_config/machines/config_machines.xmlcomponents/mpas-sourcefb489d8fe051158656398fc02dae7fc581331b8e1608647800000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Fix bug with high freq coupling in MPAS-Seaice 2020-12-22 08:36:40 -0600fb489d8fe051158656398fc02dae7fc581331b8eUpdate mpas-source: Fix bug with high freq coupling in MPAS-Seaiceeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmle912b38cd5e3e8388cf56eebed5e47c73d6231731608649132000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates hgrid for 0.125x0.125 Replaces 0.125x0.125 with r0125xr0125 Fixes #3782 [BFB] 2020-12-22 06:58:52 -0800e912b38cd5e3e8388cf56eebed5e47c73d623173Updates hgrid for 0.125x0.125editcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp07a7a6cf050305068c138960bab8289cda26cd301608650270000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd C++ FFT filter routine for VT modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h 2020-12-22 10:17:50 -050007a7a6cf050305068c138960bab8289cda26cd30Add C++ FFT filter routine for VTeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/test_fft/README.mdcomponents/eam/src/physics/crm/test_fft/clean_build.shcomponents/eam/src/physics/crm/test_fft/cmakescript.shcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft/CMakeLists.txtf25604931f4cc7e2fa11d2051d5d5e15880467191608651386000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdd code for sanity checking YAKL FFT new file: components/eam/src/physics/crm/test_fft/CMakeLists.txt new file: components/eam/src/physics/crm/test_fft/README.md new file: components/eam/src/physics/crm/test_fft/clean_build.sh new file: components/eam/src/physics/crm/test_fft/cmakescript.sh new file: components/eam/src/physics/crm/test_fft/test_fft_yakl.cpp new file: components/eam/src/physics/crm/test_fft/test_fft_yakl.h 2020-12-22 10:36:26 -0500f25604931f4cc7e2fa11d2051d5d5e1588046719Add code for sanity checking YAKL FFTaddcomponents/eam/src/physics/crm/test_fft/cmakescript.shaddcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppaddcomponents/eam/src/physics/crm/test_fft/README.mdaddcomponents/eam/src/physics/crm/test_fft/clean_build.shaddcomponents/eam/src/physics/crm/test_fft/CMakeLists.txtaddcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft/clean_build.shcomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shcomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft/README.mdcomponents/eam/src/physics/crm/sam/fftpack5_1d.F90components/eam/src/physics/crm/test_fft/CMakeLists.txtcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90components/eam/src/physics/crm/test_fft/cmakescript.shcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txt229fbf58c46cb388967ac1042ff24d9ed9b40c5d1608653593000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAdded fortran FFT sanity check code modified: components/eam/src/physics/crm/sam/fftpack5_1d.F90 renamed: components/eam/src/physics/crm/test_fft/CMakeLists.txt -> components/eam/src/physics/crm/test_fft_cpp/CMakeLists.txt renamed: components/eam/src/physics/crm/test_fft/README.md -> components/eam/src/physics/crm/test_fft_cpp/README.md renamed: components/eam/src/physics/crm/test_fft/clean_build.sh -> components/eam/src/physics/crm/test_fft_cpp/clean_build.sh renamed: components/eam/src/physics/crm/test_fft/cmakescript.sh -> components/eam/src/physics/crm/test_fft_cpp/cmakescript.sh renamed: components/eam/src/physics/crm/test_fft/test_fft_yakl.cpp -> components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp renamed: components/eam/src/physics/crm/test_fft/test_fft_yakl.h -> components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.h new file: components/eam/src/physics/crm/test_fft_fortran/README.md new file: components/eam/src/physics/crm/test_fft_fortran/test_fft.F90 2020-12-22 11:13:13 -0500229fbf58c46cb388967ac1042ff24d9ed9b40c5dAdded fortran FFT sanity check codedeletecomponents/eam/src/physics/crm/test_fft/cmakescript.shaddcomponents/eam/src/physics/crm/test_fft_cpp/README.mddeletecomponents/eam/src/physics/crm/test_fft/CMakeLists.txtdeletecomponents/eam/src/physics/crm/test_fft/test_fft_yakl.cppeditcomponents/eam/src/physics/crm/sam/fftpack5_1d.F90addcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppaddcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.haddcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtdeletecomponents/eam/src/physics/crm/test_fft/clean_build.shaddcomponents/eam/src/physics/crm/test_fft_fortran/README.mddeletecomponents/eam/src/physics/crm/test_fft/test_fft_yakl.haddcomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shaddcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shaddcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90deletecomponents/eam/src/physics/crm/test_fft/README.mdcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp9dcfc803e7c25a5ca30f5806abfba70b7ea3227b1608654849000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comMinor clean up modified: components/eam/src/physics/crm/test_fft_cpp/README.md modified: components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cpp modified: components/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.h modified: components/eam/src/physics/crm/test_fft_fortran/README.md 2020-12-22 11:34:09 -05009dcfc803e7c25a5ca30f5806abfba70b7ea3227bMinor clean upeditcomponents/eam/src/physics/crm/test_fft_cpp/README.mdeditcomponents/eam/src/physics/crm/test_fft_fortran/README.mdeditcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.heditcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppcomponents/mpas-source858df4fc55949213577b8a5a9cb6d8b1cb473a5a1608669702000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Updated sea ice emissivity 2020-12-22 14:41:42 -0600858df4fc55949213577b8a5a9cb6d8b1cb473a5aUpdate mpas-source: Updated sea ice emissivityeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xml85922d5ad5e96429f64dc86522541f6882c5fd661608678889000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd ne4 pelayout on Chrysalis 2020-12-22 17:14:49 -060085922d5ad5e96429f64dc86522541f6882c5fd66Add ne4 pelayout on Chrysaliseditcime_config/allactive/config_pesall.xmlcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/homme/cmake/machineFiles/mira.cmakecomponents/homme/cmake/machineFiles/cetus.cmakecomponents/homme/cmake/machineFiles/chrysalis.cmake5dc1891d2fe3900f00317c6b74ff872fd7a664171608679439000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd HOMME machine file for Chrysalis 2020-12-22 17:23:59 -06005dc1891d2fe3900f00317c6b74ff872fd7a66417Add HOMME machine file for Chrysalisaddcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakedeletecomponents/homme/cmake/machineFiles/cetus.cmakeaddcomponents/homme/cmake/machineFiles/chrysalis.cmakedeletecomponents/homme/cmake/machineFiles/mira.cmakecomponents/elm/src/main/elm_driver.F90fd9289c53be3a186f34fa6895f331bdf19507c1e1608743696000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfixed fates logic for decomp_verprofiles() call 2020-12-23 12:14:56 -0500fd9289c53be3a186f34fa6895f331bdf19507c1efixed fates logic for decomp_verprofiles() calleditcomponents/elm/src/main/elm_driver.F90components/elm/src/biogeochem/PhosphorusDynamicsMod.F903693093bbbd04330f8dac8a11a16bf5c0955d9a61608744049000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govfates: updated logic during capacitance-based phosphatase dynamics to move logical filters outside of loops (for performance). 2020-12-23 12:20:49 -05003693093bbbd04330f8dac8a11a16bf5c0955d9a6fates: updated logic during capacitance-based phosphatase dynamics to move logical filters outside of loops (for performance).editcomponents/elm/src/biogeochem/PhosphorusDynamicsMod.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeochem/EcosystemDynMod.F90cc2795391495f0f8aa8ea11c10026770da9825fa1608744358000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govChanged name of call ZeroUpscaled to ZeroForFates 2020-12-23 12:25:58 -0500cc2795391495f0f8aa8ea11c10026770da9825faChanged name of call ZeroUpscaled to ZeroForFateseditcomponents/elm/src/biogeochem/EcosystemDynMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90components/elm/src/main/controlMod.F90ada32084783188919c0205e9140d7b1e6061c8851608744604000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govremoved obsolete print statement 2020-12-23 12:30:04 -0500ada32084783188919c0205e9140d7b1e6061c885removed obsolete print statementeditcomponents/elm/src/main/controlMod.F90cime_config/machines/config_machines.xml7977494a065f8358e95d44ca24ed141c9c8f40fa1608748496000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govReplace netcdf versions with versions used on Anvil 2020-12-23 12:34:56 -06007977494a065f8358e95d44ca24ed141c9c8f40faReplace netcdf versions with versions used on Anvileditcime_config/machines/config_machines.xmlcomponents/elm/src/main/elm_driver.F90c0a9487ae37fcc3f8f174b56671fb8248a027b261608750937000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdated name of zero-ing of column level datastructures when fates is on 2020-12-23 14:15:37 -0500c0a9487ae37fcc3f8f174b56671fb8248a027b26updated name of zero-ing of column level datastructures when fates is oneditcomponents/elm/src/main/elm_driver.F90components/elm/src/biogeochem/AllocationMod.F90_new4d1ef5867b5a5d01bcc04a9bc479c388ac2000c91608751475000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govremoved temporary file AllocationMod.F90_new 2020-12-23 14:24:35 -05004d1ef5867b5a5d01bcc04a9bc479c388ac2000c9removed temporary file AllocationMod.F90_newdeletecomponents/elm/src/biogeochem/AllocationMod.F90_newcomponents/elm/src/external_models/fates1002ed2dd175310ff41d0aa1fcc79e244673565f1608751849000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@lbl.govupdating fates submodule pointer to tag sci.1.43.2_api.14.2.0 2020-12-23 14:30:49 -05001002ed2dd175310ff41d0aa1fcc79e244673565fupdating fates submodule pointer to tag sci.1.43.2_api.14.2.0editcomponents/elm/src/external_models/fatescomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xml064aa03e3d423df7652f59e8207eaacd2191d8531608754898000http://carson.math.uwm.edu/jenkins/user/afrobertsafrobertsafroberts@lanl.eduRemoval of high-frequency coupling for V2 default sea ice coupling 2020-12-23 13:21:38 -0700064aa03e3d423df7652f59e8207eaacd2191d853Removal of high-frequency coupling for V2 default sea ice couplingeditcomponents/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml36fb22f08febfc226d811fc1d6efa6bda7b371a61608758215000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.commakes parameter changes valid for EC30to60E2r2 only 2020-12-23 15:16:55 -060036fb22f08febfc226d811fc1d6efa6bda7b371a6makes parameter changes valid for EC30to60E2r2 onlyeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml1fcac4075a92f64f5d406a4eb2ad021b22ba29531608759701000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd IntelMPI modules on Chrysalis 2020-12-23 15:41:41 -06001fcac4075a92f64f5d406a4eb2ad021b22ba2953Add IntelMPI modules on Chrysaliseditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/src/share/geometry_mod.F90cc3e85e4b9b0db66a09819dc63ed3ad4a5e0e2d01608850921000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfixing unit tests and minor formatting 2020-12-24 17:02:01 -0600cc3e85e4b9b0db66a09819dc63ed3ad4a5e0e2d0fixing unit tests and minor formattingeditcomponents/homme/src/share/geometry_mod.F90editcomponents/homme/test_execs/thetal_kokkos_ut/thetal_test_interface.F90components/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90f76a67d2156969a0fd0484c3840f17c38119ee171608855156000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comclean up 2020-12-24 18:12:36 -0600f76a67d2156969a0fd0484c3840f17c38119ee17clean upeditcomponents/homme/test_execs/share_kokkos_ut/sphere_op_interface.F90components/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcime_config/allactive/config_compsets.xml74778938d8b246dc2c96c14f8ec824a0eb3ea9a01608869210000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd new compsets and atm use_case files for v2 Add new compsets along with default atmos namelist parameters for most used configurations for v2 finalization. The default atmos parameter values are based on v2alpha5_59 simulation. The new compsets are F2010SC5v2-CMIP6, F20TRC5v2-CMIP6 and A_WCYCL1850Sv2_CMIP6 [BFB] 2020-12-24 20:06:50 -080074778938d8b246dc2c96c14f8ec824a0eb3ea9a0Add new compsets and atm use_case files for v2addcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmladdcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmleditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/cime_config/config_component.xmladdcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcime_config/allactive/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmld1dcd81155c9732cf720c3c61fe3f5782853724b1608871274000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCorrect closing tag for some clubb params in use_case files. 2020-12-24 20:41:14 -0800d1dcd81155c9732cf720c3c61fe3f5782853724bCorrect closing tag for some clubb params in use_case files.editcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlda1467212e72d8ec5711e28a0fbfce79bf41fdc21608916094000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd v2 setting for missing micro_mg_accre_enhan_fac 2020-12-25 09:08:14 -0800da1467212e72d8ec5711e28a0fbfce79bf41fdc2Add v2 setting for missing micro_mg_accre_enhan_faceditcomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xml0a71d66c69465b512bdb26ca91cc3d00e79305211608925889000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govSet default atmos parameters for v2 in existing compsets Set default atmos parameter values for the following three compsets that are used for v2 finalization simulations based on alpha5_59 A_WCYCL1850S_CMIP6, F20TRC5-CMIP6 and F2010SC5-CMIP6 [NBFB] non-BFB for simulations using these compsets 2020-12-25 11:51:29 -08000a71d66c69465b512bdb26ca91cc3d00e7930521Set default atmos parameters for v2 in existing compsetseditcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_CMIP6.xmlcomponents/elm/cime_config/config_component.xml4d08440157cbb49f88778472c85cc67b3bbc22b11609041255000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govUpdate elm config_component to set proper use case for new compsets 2020-12-26 19:54:15 -08004d08440157cbb49f88778472c85cc67b3bbc22b1Update elm config_component to set proper use case for new compsetseditcomponents/elm/cime_config/config_component.xmlcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cpp1601093fce9a61d63cfb314b01ed32680bb03ff51609267828000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govFix CPP variable for filtered VT modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp 2020-12-29 10:50:28 -08001601093fce9a61d63cfb314b01ed32680bb03ff5Fix CPP variable for filtered VTeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F905254af6d7860881cee3a82af1a5dac10293b25b01609273048000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comUsing pointers to avoid unnecessary copies of data [BFB] - Bit-For-Bit 2020-12-29 12:17:28 -08005254af6d7860881cee3a82af1a5dac10293b25b0Using pointers to avoid unnecessary copies of dataeditcomponents/eam/src/chemistry/utils/modal_aero_calcsize.F90cime8acad83687bece1125a0305e950c2a413d10bc971609285404000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comAdd support for chrysalis to provenance.py Created a new CIME branch (worleyph/chrysalis_support) with a modified provenance.py that adds the chrysalis system to the list of supported systems. The CIME branch also (a) removes support for mira and titan systems, and (b) fixes archiving of batch job output files for slurm systems anvil, compy, cori-haswell, and cori-knl. [BFB] 2020-12-29 17:43:24 -06008acad83687bece1125a0305e950c2a413d10bc97Add support for chrysalis to provenance.pyeditcimecime_config/machines/syslog.chrysalis3cda98707a228d1caed48e2bc3dc2232bf6c031c1609288307000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comAdd job monitoring script for chrysalis Added syslog.chrysalis, to provide job progress monitoring and checkpointing for the chrysalis system. [BFB] - Bit-For-Bit 2020-12-29 18:31:47 -06003cda98707a228d1caed48e2bc3dc2232bf6c031cAdd job monitoring script for chrysalisaddcime_config/machines/syslog.chrysaliscomponents/homme/src/share/prim_driver_base.F90a20f833f159dd38166fc0eea06c9a8868403d3301609779030000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz188.llnl.govtime level fix for SCM 2021-01-04 08:50:30 -0800a20f833f159dd38166fc0eea06c9a8868403d330time level fix for SCMeditcomponents/homme/src/share/prim_driver_base.F90components/homme/src/share/prim_driver_base.F90f582b00723e8426addc6ce27c0ff83e90fad6c471609780120000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz380.llnl.govfix spacing issues 2021-01-04 09:08:40 -0800f582b00723e8426addc6ce27c0ff83e90fad6c47fix spacing issueseditcomponents/homme/src/share/prim_driver_base.F90cime_config/machines/config_machines.xml64b8e8b602228ac04ef50b534807332136ed89c41609802609000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comChange default location for SAVE_TIMING_DIR on Chrysalis Currently, jobs on Anvil and Chrysalis archive performance data in the same location. This may cause errors if Jenkins jobs, one on Anvil and one on Chrysalis, attempt to access these performance data simultaneously. To avoid this possibility, the default location for archiving performance data, specified in SAVE_TIMING_DIR, is changed for Chrysalis. [BFB] 2021-01-04 17:23:29 -060064b8e8b602228ac04ef50b534807332136ed89c4Change default location for SAVE_TIMING_DIR on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/mpas-source6306cfd91ac89837c6ca2f134f5c0d51a469be5a1609878301000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Updated sea ice for algal grazing bug 2021-01-05 14:25:01 -06006306cfd91ac89837c6ca2f134f5c0d51a469be5aUpdate mpas-source: Updated sea ice for algal grazing bugeditcomponents/mpas-sourcecomponents/elm/src/main/elmfates_interfaceMod.F90components/elm/src/main/histFileMod.F90f4ea6e14bf33d00b73d001ed81d869ed802668ca1609880368000http://carson.math.uwm.edu/jenkins/user/rgknoxrgknoxrgknox@gmail.comminor bug fixes bring fates api to 14.2 2021-01-05 12:59:28 -0800f4ea6e14bf33d00b73d001ed81d869ed802668caminor bug fixes bring fates api to 14.2editcomponents/elm/src/main/elmfates_interfaceMod.F90editcomponents/elm/src/main/histFileMod.F90cime_config/machines/config_machines.xmlf9b117c02907d8b59772eea332b6023129a972fb1609885334000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRemove I_MPI_ADJUST_ALLREDUCE=1 on Chrysalis And make pnetcdf version same as on Anvil 2021-01-05 16:22:14 -0600f9b117c02907d8b59772eea332b6023129a972fbRemove I_MPI_ADJUST_ALLREDUCE=1 on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/mpas-source1f7a2690880ce84290940586797a17ccb2700d0f1609892158000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am trying to re-add the links to the externals that were in conflict during the previous master merge. They should be the links as they are found in the master branch. 2021-01-05 18:15:58 -06001f7a2690880ce84290940586797a17ccb2700d0fI am trying to re-add the links to the externals that were in conflict duringeditcomponents/mpas-sourceexternals/kokkoscimeexternals/scorpio54cfed1be6f5592ad0d27831652213a0c53b81451609892633000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTrying to revert the remainder of these merge-conflicted externals to the version found in the master. 2021-01-05 18:23:53 -060054cfed1be6f5592ad0d27831652213a0c53b8145Trying to revert the remainder of these merge-conflicted externals to theaddexternals/kokkosaddexternals/scorpioaddcimeexternals/YAKLb165c950dc2d3a6c78aeb55c745bbc02f7772f751609892828000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding externals/YAKL to the list 2021-01-05 18:27:08 -0600b165c950dc2d3a6c78aeb55c745bbc02f7772f75Adding externals/YAKL to the listaddexternals/YAKLcomponents/eam/src/physics/crm/test_fft_fortran/README.mdcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppcomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90components/eam/src/physics/crm/test_fft_cpp/clean_build.shcomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hcomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shcomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtcomponents/eam/src/physics/crm/test_fft_cpp/README.md4c8c2c1e21c85067cdfdf7d656ec7d25fde5fb751609965854000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove FFT test scripts 2021-01-06 13:44:14 -07004c8c2c1e21c85067cdfdf7d656ec7d25fde5fb75Remove FFT test scriptsdeletecomponents/eam/src/physics/crm/test_fft_cpp/CMakeLists.txtdeletecomponents/eam/src/physics/crm/test_fft_fortran/test_fft.F90deletecomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.cppdeletecomponents/eam/src/physics/crm/test_fft_cpp/README.mddeletecomponents/eam/src/physics/crm/test_fft_cpp/test_fft_yakl.hdeletecomponents/eam/src/physics/crm/test_fft_fortran/README.mddeletecomponents/eam/src/physics/crm/test_fft_cpp/clean_build.shdeletecomponents/eam/src/physics/crm/test_fft_cpp/cmakescript.shcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/bld/build-namelist3f5fe889dbd0fc4633049ecfecb5e9a1e72fc7a31609971152000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comRemove ifdefs for MMF variance transport modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/crm/crm_history.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/post_timeloop.cpp modified: components/eam/src/physics/crm/samxx/pre_timeloop.cpp modified: components/eam/src/physics/crm/samxx/timeloop.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2021-01-06 15:12:32 -07003f5fe889dbd0fc4633049ecfecb5e9a1e72fc7a3Remove ifdefs for MMF variance transporteditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/build-namelisteditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppeditcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/crm_history.F90components/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/sam/crm_module.F90components/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/vars.hcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/bld/build-namelistf6a6ea4a80b05f55b65a69cb862e55cc8ebd83461609977996000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comVT namelist change modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_defaults_cam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml modified: components/eam/src/physics/cam/phys_control.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/cpp_interface_mod.F90 modified: components/eam/src/physics/crm/samxx/crm.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/vars.cpp modified: components/eam/src/physics/crm/samxx/vars.h 2021-01-06 17:06:36 -0700f6a6ea4a80b05f55b65a69cb862e55cc8ebd8346VT namelist changeeditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/sam/crm_module.F90editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/bld/build-namelisteditcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90editcomponents/eam/src/physics/crm/samxx/vars.cppcomponents/eam/bld/configure28f25afcf384c09acc8241bc177483d1ffc86ee41610052242000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govVT bug fix in configure modified: components/eam/bld/configure 2021-01-07 12:44:02 -080028f25afcf384c09acc8241bc177483d1ffc86ee4VT bug fix in configureeditcomponents/eam/bld/configurecomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/silhs/latin_hypercube_arrays.F90run_e3sm_scm_DYCOMSrf02.cshcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90components/eam/src/physics/silhs/generate_uniform_sample_module.F90components/eam/src/physics/silhs/math_utilities.F90cime_config/machines/config_compilers.xmlREPLAY/run_e3sm_anvil_gust.cshnightly_test/nightly_e3sm_scm_RICO.cshrun_silhs_anvil_gust.cshrun_e3sm_scm_BOMEX.cshrun_e3sm_scm_RICO.cshnightly_test/nightly_e3sm_scm_BOMEX.cshrun_e3sm_scm_ARM_shallow.cshcomponents/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/silhs/parameters_silhs.F90run_e3sm_scm_REPLAY.cshcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90run_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90components/eam/src/physics/silhs/transform_to_pdf_module.F90tau_clean_anvil.cshcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F9059648e41aa329daa78692274049621b7d1453ebe1610067520000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am making this commit to fix the recent merge of the E3SM master branch into this branch. This includes re-adding the silhs/ directory and all SILHS files that were accidentally removed during the merge commit. 2021-01-07 18:58:40 -060059648e41aa329daa78692274049621b7d1453ebeI am making this commit to fix the recent merge of the E3SM master branch intoaddcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90addcomponents/eam/src/physics/silhs/parameters_silhs.F90editnightly_test/nightly_e3sm_scm_DYCOMSrf01.csheditrun_silhs_anvil_gust.csheditrun_e3sm_scm_DYCOMSrf02.csheditcime_config/machines/config_compilers.xmleditREPLAY/run_e3sm_anvil_gust.csheditnightly_test/nightly_e3sm_scm_RICO.csheditrun_e3sm_scm_DYCOMSrf01.cshedittau_clean_anvil.cshaddcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90addcomponents/eam/src/physics/silhs/output_2D_samples_module.F90editnightly_test/nightly_e3sm_scm_BOMEX.cshaddcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F90addcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90editrun_e3sm_scm_BOMEX.csheditrun_e3sm_scm_RICO.csheditcomponents/eam/src/physics/cam/clubb_intr.F90editrun_e3sm_scm_REPLAY.cshaddcomponents/eam/src/physics/silhs/transform_to_pdf_module.F90addcomponents/eam/src/physics/silhs/generate_uniform_sample_module.F90addcomponents/eam/src/physics/silhs/version_silhs.txteditrun_e3sm_scm_ARM_shallow.cshaddcomponents/eam/src/physics/silhs/latin_hypercube_arrays.F90addcomponents/eam/src/physics/silhs/math_utilities.F90addcomponents/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/cam/clubb_intr.F9016c876658d24dfc67e362284355e125cd3ea85841610083868000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving a duplicate print statement for all CLUBB tunable parameters. 2021-01-07 23:31:08 -060016c876658d24dfc67e362284355e125cd3ea8584Removing a duplicate print statement for all CLUBB tunable parameters.editcomponents/eam/src/physics/cam/clubb_intr.F90components/homme/src/share/prim_driver_base.F9030845ddfcacf7c48fec6086ec233d15f84016fee1610126212000http://carson.math.uwm.edu/jenkins/user/bogenschbogenschbogensch@quartz2306.llnl.govupdate comments 2021-01-08 09:16:52 -080030845ddfcacf7c48fec6086ec233d15f84016feeupdate commentseditcomponents/homme/src/share/prim_driver_base.F90components/homme/test/reg_test/namelists/thetah-nhgw.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nlcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nlcomponents/homme/test/reg_test/namelists/preqx-nhgw.nlcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nlee6feea017b1f346458f316317b46f0459c073631610127773000http://carson.math.uwm.edu/jenkins/user/celdredceldredceldred@sandia.govfix planar test directories 2021-01-08 10:42:53 -0700ee6feea017b1f346458f316317b46f0459c07363fix planar test directorieseditcomponents/homme/test/reg_test/namelists/thetah-nhgw-slice.nleditcomponents/homme/test/reg_test/namelists/thetah-nhgw.nleditcomponents/homme/test/reg_test/namelists/thetanh-nhgw.nleditcomponents/homme/test/reg_test/namelists/preqx-nhgw-slice.nleditcomponents/homme/test/reg_test/namelists/sweqx-dbvor.nleditcomponents/homme/test/reg_test/namelists/preqx-nhgw.nleditcomponents/homme/test/reg_test/namelists/thetanh-nhgw-slice.nlremap/make_climo.pypostprocessing/run_e3sm_diags.pyremap/function_cal_mean.pyrun_silhs_anvil_gust.cshremap/remap_ne30.cshremap/remap.cshremap/remap_ne30_3h.cshremap/remap_3h.cshbe4dfdb890bf85230155920824c0c666724b8aa41610133110000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI made changes necessary for postprocessing the updated output files, where "eam" has replaced "cam" in the file names. 2021-01-08 13:11:50 -0600be4dfdb890bf85230155920824c0c666724b8aa4I made changes necessary for postprocessing the updated output files, whereeditremap/remap_ne30_3h.csheditremap/remap.csheditremap/remap_ne30.csheditremap/function_cal_mean.pyeditremap/remap_3h.csheditpostprocessing/run_e3sm_diags.pyeditrun_silhs_anvil_gust.csheditremap/make_climo.pydiagnostic_v2_0/function_cal_mean.pydiagnostic_v2_0/E3SM_CLUBB_diag.pydiagnostic_v2_0/function_pick_out.py29dc13ba784cf2c86a796f4a8e9820c3930ac6821610134959000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the E3SM-CLUBB plot files to account for the file naming convention change from .cam. to .eam. 2021-01-08 13:42:39 -060029dc13ba784cf2c86a796f4a8e9820c3930ac682Changing the E3SM-CLUBB plot files to account for the file naming conventioneditdiagnostic_v2_0/function_pick_out.pyeditdiagnostic_v2_0/function_cal_mean.pyeditdiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/eam/src/physics/crm/samxx/crm_variance_transport.hcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppcomponents/eam/src/physics/crm/samxx/setperturb.cppcomponents/eam/src/physics/crm/crm_output_module.F90df57eba531fa565c73caf03df14012d156a035361610149005000http://carson.math.uwm.edu/jenkins/user/whannah1whannah1whannah1@gmail.comAddress PR comments modified: components/eam/src/physics/crm/crm_output_module.F90 modified: components/eam/src/physics/crm/sam/crm_variance_transport.F90 modified: components/eam/src/physics/crm/samxx/crm_variance_transport.cpp modified: components/eam/src/physics/crm/samxx/crm_variance_transport.h modified: components/eam/src/physics/crm/samxx/setperturb.cpp 2021-01-08 18:36:45 -0500df57eba531fa565c73caf03df14012d156a03536Address PR commentseditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.heditcomponents/eam/src/physics/crm/samxx/crm_variance_transport.cppeditcomponents/eam/src/physics/crm/samxx/setperturb.cppeditcomponents/eam/src/physics/crm/crm_output_module.F90editcomponents/eam/src/physics/crm/sam/crm_variance_transport.F90components/mpas-source52280eab6d3213621037bfe84352f0990e8d851f1610385527000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govWiden halo for Redi hmix computation 2021-01-11 09:18:47 -080052280eab6d3213621037bfe84352f0990e8d851fWiden halo for Redi hmix computationeditcomponents/mpas-sourcecomponents/eam/src/physics/crm/crm_physics.F906f7ea3fb35f8133f692a69d740fb7b7153b10bc41610391122000http://carson.math.uwm.edu/jenkins/user/hannah6hannah6hannah6@llnl.govVT bug fix modified: components/eam/src/physics/crm/crm_physics.F90 2021-01-11 10:52:02 -08006f7ea3fb35f8133f692a69d740fb7b7153b10bc4VT bug fixeditcomponents/eam/src/physics/crm/crm_physics.F90cime899fa2cc8fa7681fd718ffcf70fcce954eac30dc1610392219000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule Updating to lastest CIME master: cc2fa1c8581c3e5aff5e9aa095f6fcb1cf19969d Changes: 1) Add a useful check to wait_for_tests to catch when TestStatus file is corrupted 2) Add a mask to seq_io_write_avscomp 3) NML gen: Facilitate adding defaults for a namelist group conditionally. 4) MCT: Add memory usage logging 5) SCREAM: Add some missing SCREAM config dirs 6) cime standalone testing: allow nuopc to skip some tests 7) PIO2: Update PIO2 to latest version and add testing support for PIO async tests 8) Makefile: Remove unused logic Bug fixes: 1) Fixes an issue in cpl hist avg files that caused the time variable not to be written correctly in pio2 2) Fix cleanup in scripts_regression_tests 3) PIO2: Seq io fix pio2, Don't rely on pio to do data conversions 4) env_batch.xml: need to get queue from case, not batch object 5) Need srun_binding to be an int, not float [BFB] 2021-01-11 12:10:19 -0700899fa2cc8fa7681fd718ffcf70fcce954eac30dcUpdate CIME submoduleeditcimecomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmlcime_config/allactive/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmlcomponents/eam/bld/build-namelist2c3aa23c11ad4650bc9070173f189f9e16808a0b1610394302000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename default v2 compsets and use_case files 2021-01-11 11:45:02 -08002c3aa23c11ad4650bc9070173f189f9e16808a0bRename default v2 compsets and use_case filesaddcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmladdcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmleditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/cime_config/config_compsets.xmleditcime_config/allactive/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850v2_cam5_CMIP6.xmladdcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmleditcomponents/eam/bld/build-namelistdeletecomponents/eam/bld/namelist_files/use_cases/20TRv2_cam5_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/2010Sv2_cam5_CMIP6.xmlcimef604e17ddbd18e10769f359e89b6cc7ea4a2c2a91610407525000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govSet back the CIME commit to avoid PIO issues 2021-01-11 16:25:25 -0700f604e17ddbd18e10769f359e89b6cc7ea4a2c2a9Set back the CIME commit to avoid PIO issueseditcimecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01a.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-02.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-03.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01a.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-03.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-01.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01b.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01b.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-02.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01b.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-00.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-01.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01c.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04p.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-01.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-00.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-03.xml3622da32e5902704f89e1e595841fe8a1092692c1610426854000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govClean up av1c/f series of compsets except *AV1C-L and FC5AV1C-H01A for nightly tests 2021-01-11 20:47:34 -08003622da32e5902704f89e1e595841fe8a1092692cClean up av1c/f series of compsets except *AV1C-L and FC5AV1C-H01A for nightly testsdeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01b.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-00.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-02.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01c.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-02.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01a.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-01.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-h01b.xmleditcomponents/eam/cime_config/config_component.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01b.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-04.xmleditcomponents/eam/cime_config/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-h01c.xmldeletecomponents/eam/bld/namelist_files/use_cases/20TR_cam5_av1c-03.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01a.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1f.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-h01c.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_av1c-00.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/config_files/definition.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/build-namelistdbba34f9733b861f1f410f31a3fc662beb9c03d41610467387000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRename namelist_defaults_cam.xml to namelist_defaults_eam.xml 2021-01-12 08:03:07 -0800dbba34f9733b861f1f410f31a3fc662beb9c03d4Rename namelist_defaults_cam.xml to namelist_defaults_eam.xmladdcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/eam/bld/build-namelistdeletecomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcomponents/eam/bld/config_files/definition.xmleditcomponents/eam/bld/namelist_files/namelist_definition.xmlcimea6d130f5e48ea59ec38c32abd869ce21090dfc7e1610484177000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govAdd chrysalis prov 2021-01-12 13:42:57 -0700a6d130f5e48ea59ec38c32abd869ce21090dfc7eAdd chrysalis proveditcimecomponents/homme/src/share/compose/compose_cedr.cpp7d86312b9b156602eca72d8cf6b3f5b3db33fac51610488474000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, SL: Add typedef to make SL transport run in a GPU build. SL transport currently runs only on the host, but one execution space was set to the device space. 2021-01-12 13:54:34 -08007d86312b9b156602eca72d8cf6b3f5b3db33fac5Homme, SL: Add typedef to make SL transport run in a GPU build.editcomponents/homme/src/share/compose/compose_cedr.cppcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/control_mod.F90082e68f2c402256274e77587e4b86135fbeffddd1610498905000http://carson.math.uwm.edu/jenkins/user/ambradlambradlambradl@sandia.govHomme, EAM: More details for dt_remap_factor and dt_tracer_factor. Add additional output in the timesteps checking routine for one case. Add additional details to the XML descriptions for dt_tracer_factor and dt_remap_factor. 2021-01-12 16:48:25 -0800082e68f2c402256274e77587e4b86135fbeffdddHomme, EAM: More details for dt_remap_factor and dt_tracer_factor.editcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/homme/src/share/control_mod.F90components/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelist8d1cce3a053daf9e7d8edba35058aa539cdee20e1610562751000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.gov Add new semi-implicit namelist groups to ocean namelist 2021-01-13 10:32:31 -08008d1cce3a053daf9e7d8edba35058aa539cdee20eAdd new semi-implicit namelist groups to ocean namelisteditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelist9a9ffaad07e4cebb7555c36e25b4a58396a2de051610562759000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate ocean build-namelist with new namelists for semi-implicit 2021-01-13 10:32:39 -08009a9ffaad07e4cebb7555c36e25b4a58396a2de05Update ocean build-namelist with new namelists for semi-impliciteditcomponents/mpas-ocean/bld/build-namelistcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist8039bbf44182a06a53bdc836ccf191f93900e9e91610562767000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govAdd bfb thread mode for semi-implicit 2021-01-13 10:32:47 -08008039bbf44182a06a53bdc836ccf191f93900e9e9Add bfb thread mode for semi-impliciteditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist842c1db8d6bea474447cd744964d48db0220ac081610562776000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate flag name 2021-01-13 10:32:56 -0800842c1db8d6bea474447cd744964d48db0220ac08Update flag nameeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-source8c637c259a1c254f108b16301169bc52dd7d7b121610562858000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source 2021-01-13 10:34:18 -08008c637c259a1c254f108b16301169bc52dd7d7b12Update mpas-sourceeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml00d80d3011378e564a0ea13952c74366105147e81610562933000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govAdds support for NA RRM grid on ELM - Adds northamericax4v1pg2 as a valid resolution - Adds mapping files needed to create surface datasets at northamericax4v1pg2 - Adds surface dataset for 1850 and 2010 2021-01-13 10:35:33 -080000d80d3011378e564a0ea13952c74366105147e8Adds support for NA RRM grid on ELMeditcomponents/elm/bld/namelist_files/namelist_definition.xmleditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/eam/bld/namelist_files/namelist_defaults_cam.xml0bf34380371155b1a0f90a22b55b6485d58fae051610567748000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comfix enax and twpx runs 2021-01-13 13:55:48 -06000bf34380371155b1a0f90a22b55b6485d58fae05fix enax and twpx runseditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xml6921b670bb4b31352089d0dcd87f02476a37aa341610583328000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-o namelist definitions with output from automated scripts 2021-01-13 18:15:28 -06006921b670bb4b31352089d0dcd87f02476a37aa34Update mpas-o namelist definitions with output from automated scriptseditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-source8e0fdf4205cfd0b414432dec859da0e1d701dcfe1610746541000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: cosine bell test case 2021-01-15 13:35:41 -08008e0fdf4205cfd0b414432dec859da0e1d701dcfeupdate mpas-source: cosine bell test caseeditcomponents/mpas-sourcecomponents/mpas-source3e2a11af1cd9f18676548a2df1bc5b40d7584e5c1611093034000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: Port ocean velocity to GPU 2021-01-19 13:50:34 -08003e2a11af1cd9f18676548a2df1bc5b40d7584e5cUpdate mpas-source: Port ocean velocity to GPUeditcomponents/mpas-sourcecime_config/machines/Depends.cray.cmakecime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml4ecf7f6bae6109df68aec1cfe3aad140583754eb1611095586000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable Cray compiler on Theta 2021-01-19 22:33:06 +00004ecf7f6bae6109df68aec1cfe3aad140583754ebEnable Cray compiler on Thetaeditcime_config/machines/config_machines.xmleditcime_config/machines/Depends.cray.cmakeeditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmldde38a6d40a826e0c3006a5ae8000e9979aef8791611095817000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUse ceiling for number of job nodes 2021-01-19 22:36:57 +0000dde38a6d40a826e0c3006a5ae8000e9979aef879Use ceiling for number of job nodeseditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xmla46a7155be9d88ac2d58c8ea057a994e103a560a1611096161000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate modules 2021-01-19 22:42:41 +0000a46a7155be9d88ac2d58c8ea057a994e103a560aUpdate moduleseditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmc85fdafe6ef3538bd3ea013369ad5ae0afa0933c1611096325000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd cray compiler to ChemPreprocess.pm 2021-01-19 22:45:25 +0000c85fdafe6ef3538bd3ea013369ad5ae0afa0933cAdd cray compiler to ChemPreprocess.pmeditcomponents/eam/bld/perl5lib/Build/ChemPreprocess.pmcimecime_config/machines/Depends.cray.cmakecime_config/machines/config_machines.xml806361e87be397678be26a7af29e6e209299efa81611102090000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate Cray compiler to cce/10.0.3 on Theta 2021-01-20 00:21:30 +0000806361e87be397678be26a7af29e6e209299efa8Update Cray compiler to cce/10.0.3 on Thetaeditcime_config/machines/config_machines.xmleditcimeeditcime_config/machines/Depends.cray.cmakecime_config/machines/config_machines.xmlae4e98ec8f03f60a53c318289fe36c839ef799231611106606000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRemove darshan for Cray compiler on Theta 2021-01-20 01:36:46 +0000ae4e98ec8f03f60a53c318289fe36c839ef79923Remove darshan for Cray compiler on Thetaeditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/zm_conv.F90c91bf8fd946b03d90919fc7012f0fc33ea248b3f1611125072000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comFixes a NBFB issue when clubb_use_sgv and zmconv_tp_fac are used The model produces NBFB answers when run with phys_loadbalance =0 and phys_loadbalance=2 with the following settings in atm_in: clubb_use_sgv = .true. zmconv_tp_fac = 2.0D0 The reason is that the "tpert" variable is used in zm_convr subroutine directly without collecting the "gathered" columns of "tpert". To fix this, a new variable "tpertg" is declared which has the "gathered" columns of "tpert". "tpertg" is being used instead of "tpert" for cloud properties calculations. 2021-01-19 22:44:32 -0800c91bf8fd946b03d90919fc7012f0fc33ea248b3fFixes a NBFB issue when clubb_use_sgv and zmconv_tp_fac are usededitcomponents/eam/src/physics/cam/zm_conv.F90cime_config/config_grids.xmlef9b2edd849ce08a4729d8b1b6b4ad67eb7328d31611247050000http://carson.math.uwm.edu/jenkins/user/tang30tang30tang30@llnl.govAdd grid definition and maps for bi-grid NA RRM 2021-01-21 08:37:30 -0800ef9b2edd849ce08a4729d8b1b6b4ad67eb7328d3Add grid definition and maps for bi-grid NA RRMeditcime_config/config_grids.xmlcomponents/mpas-sourcefc4a1b262a7a364c64772189f46a707d7fba6e2d1611262525000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govmpas clean-up: remove compass/ocean, add doc template 2021-01-21 12:55:25 -0800fc4a1b262a7a364c64772189f46a707d7fba6e2dmpas clean-up: remove compass/ocean, add doc templateeditcomponents/mpas-sourcecomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xml90a7a88a2a2f1f098f89557bd80a6d8b8c1861ca1611263018000http://carson.math.uwm.edu/jenkins/user/tang30tang30tang30@llnl.govAdds support for NA RRM grid on ELM - Adds northamericax4v1pg2 as a valid resolution - Adds mapping files needed to create surface datasets at northamericax4v1pg2 - Adds surface dataset for 1850 and 2010 (cherry picked from commit 00d80d3011378e564a0ea13952c74366105147e8) 2021-01-21 13:03:38 -080090a7a88a2a2f1f098f89557bd80a6d8b8c1861caAdds support for NA RRM grid on ELMeditcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/elm/bld/namelist_files/namelist_definition_clm4_5.xmlcime_config/machines/config_machines.xml50e9c8dbbc695eb5f2bb8172ff4ff1940071357b1611264838000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd gnu modules for intel-mpi on Chrysalis 2021-01-21 15:33:58 -060050e9c8dbbc695eb5f2bb8172ff4ff1940071357bAdd gnu modules for intel-mpi on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml9b91c5a5dd614434a028f72cf0d51466c2ab32721611272787000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the name of surface data files 2021-01-21 15:46:27 -08009b91c5a5dd614434a028f72cf0d51466c2ab3272Updates the name of surface data fileseditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xmlde45b4d06e3d54539a4b47dac35c164870a13de01611275174000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govUpdates the hgrid names 2021-01-21 16:26:14 -0800de45b4d06e3d54539a4b47dac35c164870a13de0Updates the hgrid nameseditcomponents/elm/bld/namelist_files/namelist_defaults.xmlcomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/elm/bld/namelist_files/namelist_defaults.xml1493273817b4419174e45a4ca474983b4a5eeece1611276324000http://carson.math.uwm.edu/jenkins/user/gautam.bishtgautam.bishtgautam.bisht@pnnl.govMore changes due to renmaing of hgrid 2021-01-21 16:45:24 -08001493273817b4419174e45a4ca474983b4a5eeeceMore changes due to renmaing of hgrideditcomponents/elm/bld/namelist_files/namelist_defaults.xmleditcomponents/elm/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/ChangeLogcomponents/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/silhs/parameters_silhs.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/stats_variables.F903686274c140d6ed6d10d9a4267fb9cae5950c63e1611304148000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS in the latest E3SMv2 NGD branch to version f2dc5c2 from January 21, 2021. That's right ... the first update from the great post-Trump years! 2021-01-22 02:29:08 -06003686274c140d6ed6d10d9a4267fb9cae5950c63eI updated the version of CLUBB and SILHS in the latest E3SMv2 NGDeditcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/clubb/parameters_tunable.F90deletecomponents/eam/src/physics/clubb/ChangeLogeditcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90editcomponents/eam/src/physics/silhs/parameters_silhs.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/namelist_definition.xmlrun_silhs_anvil_gust.csh3b85f7b642121dd5d4e709cf10949c9802214b411611337459000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitted some E3SM-sided updates to work with the new version of CLUBB-SILHS. 2021-01-22 11:44:19 -06003b85f7b642121dd5d4e709cf10949c9802214b41Committed some E3SM-sided updates to work with the new version of CLUBB-SILHS.editrun_silhs_anvil_gust.csheditcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmlcime_config/machines/config_machines.xmlf13091df87fc6b2ffbd8049628ffe76c5b60d3471611357741000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govEnable test runs on compute nodes on Chrysalis 2021-01-22 17:22:21 -0600f13091df87fc6b2ffbd8049628ffe76c5b60d347Enable test runs on compute nodes on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/homme/cmake/machineFiles/chrysalis.cmakecomponents/homme/cmake/machineFiles/chrysalis-bfb.cmake98b385804d7ab2718a8852a4dc3316c5e0d7d9fc1611364712000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate HOMME cmake files on Chrysalis 2021-01-22 19:18:32 -060098b385804d7ab2718a8852a4dc3316c5e0d7d9fcUpdate HOMME cmake files on Chrysaliseditcomponents/homme/cmake/machineFiles/chrysalis.cmakeeditcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/eam/src/physics/cam/vertical_diffusion.F9097ba4e619e3a5e19343b43404527b44b141948a71611365140000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comReverted accidently modified vertical_diffusion.F90 file 2021-01-22 17:25:40 -080097ba4e619e3a5e19343b43404527b44b141948a7Reverted accidently modified vertical_diffusion.F90 fileeditcomponents/eam/src/physics/cam/vertical_diffusion.F90components/eam/src/physics/cam/zm_conv.F90cime_config/tests.py87975ca0a5b0557fecb8e7551a90c8548278e22b1611371130000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix uninitialized pblt600 and replace a remaining FC5AV1C-04P2 test Uninitialized pblt600 could be used when dCCAPE_ULL is used and surface pressure of the column is above 6000 hPa. It would impact how convective adjustment is performed, which could lead to instability. It is now initialized to 1. Also replace a remaining test that uses the now non-existent compset FC5AV1C-04P2 with FC5AV1C-L. The test name changes but the results will not. [BFB] except with dCAPE_ULL trigger -- as for v2 default setting -- on some systems 2021-01-22 19:05:30 -080087975ca0a5b0557fecb8e7551a90c8548278e22bFix uninitialized pblt600 and replace a remaining FC5AV1C-04P2 testeditcomponents/eam/src/physics/cam/zm_conv.F90editcime_config/tests.pycomponents/homme/src/tool/tool_main.F90components/homme/src/share/interpolate_mod.F90components/homme/src/interpolate_driver_mod.F90e94f79b82d08f9bb79da53a86f1305bc78fd61fd1611424895000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orghomme_tool fixes for interpolating NE1024 data fix integer overflow in inputfile PIO decomp skip requiested variables that are not in the input file skip 2D string varaiables (not working in pio_copy_var ) add ability to thread the interpolating setup loop. Then we can save in I/O time by running fewer MPI tasks. 2021-01-23 10:01:35 -0800e94f79b82d08f9bb79da53a86f1305bc78fd61fdhomme_tool fixes for interpolating NE1024 dataeditcomponents/homme/src/share/interpolate_mod.F90editcomponents/homme/src/tool/tool_main.F90editcomponents/homme/src/interpolate_driver_mod.F90components/homme/src/interpolate_driver_mod.F905b1c0fa3ac99e528747cb618e1eb0e40997166631611446144000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgfix index bug 2021-01-23 15:55:44 -08005b1c0fa3ac99e528747cb618e1eb0e4099716663fix index bugeditcomponents/homme/src/interpolate_driver_mod.F90components/homme/test/tool/cori.joba14c8e0dbce3624b9d41d89528717856d3a9520c1611446467000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgupdate cori.job script to use threads 2021-01-23 16:01:07 -0800a14c8e0dbce3624b9d41d89528717856d3a9520cupdate cori.job script to use threadseditcomponents/homme/test/tool/cori.jobcomponents/eam/src/physics/silhs/parameters_silhs.F90components/eam/src/physics/silhs/silhs_api_module.F90decf67bbc9cee45cbe790eae6466c264370f57c71611610922000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFurther updates to CLUBB, which will be "made official" later. 2021-01-25 15:42:02 -0600decf67bbc9cee45cbe790eae6466c264370f57c7Further updates to CLUBB, which will be "made official" later.editcomponents/eam/src/physics/silhs/parameters_silhs.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90run_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/subcol_SILHS.F90387863cf01965fb81cd783f854b02fd31fec1ccb1611612882000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added subcol_SILHS_vert_decorr_coef to the namelist. 2021-01-25 16:14:42 -0600387863cf01965fb81cd783f854b02fd31fec1ccbI added subcol_SILHS_vert_decorr_coef to the namelist.editrun_silhs_anvil_gust.csheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/bld/namelist_files/namelist_definition.xml89aa66fa39b048b9bd649d4a56ff07552331c16a1611613363000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added subcol_SILHS_vert_decorr_coef to namelist_definition.xml. 2021-01-25 16:22:43 -060089aa66fa39b048b9bd649d4a56ff07552331c16aI added subcol_SILHS_vert_decorr_coef to namelist_definition.xml.editcomponents/eam/bld/namelist_files/namelist_definition.xmlcime_config/machines/config_machines.xmla9b193f3fd4b5ddde910857ab6fbe9483852d1921611617343000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govAdd procs-per-node option to intel-mpi mpirun on Chrysalis 2021-01-25 17:29:03 -0600a9b193f3fd4b5ddde910857ab6fbe9483852d192Add procs-per-node option to intel-mpi mpirun on Chrysaliseditcime_config/machines/config_machines.xmlcime_config/machines/config_machines.xml185a76baa1669dcdc11855e819683565ed3c78f81611684304000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate mappy to gcc-8.1.0 to match summit 2021-01-26 11:05:04 -0700185a76baa1669dcdc11855e819683565ed3c78f8Update mappy to gcc-8.1.0 to match summiteditcime_config/machines/config_machines.xmlcomponents/mpas-sourcea0d080b775a60db45f2a9f9ed1e7426c825823fd1611695363000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: fixed seaice column message threading bug 2021-01-26 15:09:23 -0600a0d080b775a60db45f2a9f9ed1e7426c825823fdUpdate mpas-source: fixed seaice column message threading bugeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/namelist_definition.xmlrun_silhs_anvil_gust.csh351c49a679ff24b779a1f9c97d2058f01acefd251611695409000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduModifying E3SM to work with the latest version of CLUBB-SILHS. 2021-01-26 15:10:09 -0600351c49a679ff24b779a1f9c97d2058f01acefd25Modifying E3SM to work with the latest version of CLUBB-SILHS.editcomponents/eam/src/physics/cam/clubb_intr.F90editrun_silhs_anvil_gust.csheditcomponents/eam/bld/namelist_files/namelist_definition.xmlrun_silhs_anvil_gust.csh7e4352682c75f4e2e7cbc93a22480f22675c63f21611695634000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding clubb_C_invrs_tau_wpxp_Ri and clubb_C_invrs_tau_wpxp_N2_thresh entrees to the namelist for backwards compatibility. 2021-01-26 15:13:54 -06007e4352682c75f4e2e7cbc93a22480f22675c63f2Adding clubb_C_invrs_tau_wpxp_Ri and clubb_C_invrs_tau_wpxp_N2_thresheditrun_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/zm_conv_intr.F90components/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/configurecomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/phys_control.F90components/eam/bld/config_files/definition.xmlcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmlcomponents/eam/src/chemistry/aerosol/wetdep.F90components/eam/bld/build-namelist4f3768077b2bb13745755db05d45f3ea82c6a3871611700411000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govConsolidate v2 atm parameter values into a common default file Optimized atm parameter values for v2 were initially set in run script, then migrated to use case files for corresponding compsets. This PR further consolidates the common settings among the v2 compsets into namelist_defaults_eam.xml from use case files. This PR also renames physics package name used for v2 during configuration and runtime to 'default'. [NBFB] Tests using active atm component likely will be NBFB as many of the new default parameter values incorporated from use case files have not yet been used in the nightly test cases. 2021-01-26 14:33:31 -08004f3768077b2bb13745755db05d45f3ea82c6a387Consolidate v2 atm parameter values into a common default fileeditcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6.xmleditcomponents/eam/bld/namelist_files/use_cases/2010_eam_CMIP6.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/eam/src/chemistry/aerosol/wetdep.F90editcomponents/eam/bld/configureeditcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/bld/namelist_files/use_cases/1850_eam_CMIP6.xmleditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/src/physics/cam/zm_conv_intr.F90editcomponents/eam/bld/config_files/definition.xmlcime_config/machines/config_machines.xml32b8d9193c150a5ae1cb9d71c0f17e6348d9f4df1611700428000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govRun intel-mpi with slurm srun on Chrysalis 2021-01-26 16:33:48 -060032b8d9193c150a5ae1cb9d71c0f17e6348d9f4dfRun intel-mpi with slurm srun on Chrysaliseditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/version_clubb_core.txt8e9829aaf60e948acab38c316cf35eee372dbbf31611700626000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am officially upgrading the version of CLUBB and SILHS used in E3SM to version c689c7e from January 25, 2021. 2021-01-26 16:37:06 -06008e9829aaf60e948acab38c316cf35eee372dbbf3I am officially upgrading the version of CLUBB and SILHS used in E3SM toeditcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/version_clubb_core.txtrun_silhs_anvil_gust.csh62393ed1e01c4c9a02ebd7bf38a8e97e3daa460c1611700864000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAltered the git commit hash in the run script to reflect the updated version of CLUBB-SILHS in the code. 2021-01-26 16:41:04 -060062393ed1e01c4c9a02ebd7bf38a8e97e3daa460cAltered the git commit hash in the run script to reflect the updatededitrun_silhs_anvil_gust.cshcomponents/eam/src/physics/cam/clubb_intr.F908a2d4eb4869961610039ce8737232ddb80677d351611701168000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduResetting clubb_debug_level from 3 to 2 allows us to get rid of the level 3 debug print statemements without needing to comment items out of the code. 2021-01-26 16:46:08 -06008a2d4eb4869961610039ce8737232ddb80677d35Resetting clubb_debug_level from 3 to 2 allows us to get rid of theeditcomponents/eam/src/physics/cam/clubb_intr.F90cime_config/testmods_dirs/allactive/v2_wcprod/shell_commandscime_config/tests.pycime_config/testmods_dirs/allactive/v2_wcprod/READMEcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassicime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplaf41e5be173a6098891eea13e08165298563afbd1611707429000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds test SMS.northamericax4v1pg2_WC14to60E2r3_ICG.A_WCYCL1850S_CMIP6 The test mods are in cime_config/testmods_dirs/allactive/v2_wcprod *********1*********2*********3*********4*********5*********6*********7** Longer commit message body describing the commit. Can contain lists as follows: * Item 1 * Item 2 * Item 3 A good commit message should be written like an email, a subject followed by a blank line, followed by a more descriptive body. Can also contain a tag at the bottom describing what type of commit this is. [BFB] - Bit-For-Bit [FCC] - Flag Climate Changing [Non-BFB] - Non Bit-For-Bit [CC] - Climate Changing [NML] - Namelist Changing See confluence for a more detailed description about these tags. 2021-01-26 16:30:29 -0800af41e5be173a6098891eea13e08165298563afbdAdds test SMS.northamericax4v1pg2_WC14to60E2r3_ICG.A_WCYCL1850S_CMIP6addcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamaddcime_config/testmods_dirs/allactive/v2_wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassiaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartaddcime_config/testmods_dirs/allactive/v2_wcprod/READMEeditcime_config/tests.pyaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasoaddcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakecomponents/homme/cmake/machineFiles/chrysalis.cmake0e5bfc64172553e65573787f44a7b8e676a8b6ef1611709950000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govSimplify and use srun for homme on Chrysalis 2021-01-26 19:12:30 -06000e5bfc64172553e65573787f44a7b8e676a8b6efSimplify and use srun for homme on Chrysaliseditcomponents/homme/cmake/machineFiles/chrysalis-bfb.cmakeeditcomponents/homme/cmake/machineFiles/chrysalis.cmakeexternals/scorpioexternals/scorpio_classic0bd41d0052f1f5690f8dd4bfea42468b150d5ede1611717727000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio ver 1.1.6 Updating to Scorpio version 1.1.6. Scorpio classic is also updated to version 1.1.6 This release includes, * A new asynchronous I/O interface required for compatibility with PIO2 and CIME * Performance improvements for the ADIOS conversion tool 2021-01-26 21:22:07 -06000bd41d0052f1f5690f8dd4bfea42468b150d5edeUpdating to Scorpio ver 1.1.6editexternals/scorpio_classiceditexternals/scorpiocimebf6e57f16a9c2588816a63f52601d0a0733254751611754066000http://carson.math.uwm.edu/jenkins/user/worleyphworleyphworleyph@gmail.comFix calc. for max. number of levels when using noI8 and update comments Created a new CIME branch (worleyph/reprosum_i4_fix) with a modified shr_reprosum_mod.F90 that fixes an error when building with the CPP token noI8 defined (not currently used in E3SM) and adds comments to clarify logic in the code, as follows. i) Fix calculation for maximum number of levels when using noI8 When using 4-byte integers instead of 8-byte integers in shr_reprosum_mod.F90 (by defining the CPP token 'noI8' when compiling), certain 8-byte (real*8) reals are not being represented as a vector of integers exactly. We determined that this is because not enough integers are being used to represent the value, introducing an error in the sum by truncating the least significant bits for these values. We traced the error to the calculation of the maximum number of integers needed to represent each of the real*8 summands. The current logic is 2 + ((digits(0_i8) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) for 8-byte integers, and 2 + ((digits(0_i4) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) for 4-byte integers. The error is that in both we should be using the number of significant digits in the 8-byte real value, digits(0.0_r8), instead of the number of digits in the integer representation. The fix is to replace the above by 2 + ((digits(0.0_r8) + (arr_gmax_exp(ifld)-arr_gmin_exp(ifld))) / arr_max_shift) When using 8-byte integers, digits(0_i8) is greater than digits(0.0_r8), so no error is incurred in the original logic. However, digits(0_i4) is less than digits(0.0_r8), resulting in occasional errors when using 4-byte integers. As the modified logic correctly calculates the maximum number of integers needed to represent each real*8 summand, changing from digits(0_i8) to digits(0.0_r8) does not change the results of shr_reprosum_mod.F90 calculations when using 8-byte integers. This modification will, however, eliminate the potential loss of accuracy when using 4-byte integers, and could change the resulting sums. Both statements have been verified in empirical studies, both standalone and in E3SM using a range of mesh resolutions and both F and fully coupled cases. ii) Add comment to explain logic in shr_reprosum_mod.F90 The logic for defining the maximum number of summands max_nsummands = (max_nsummands/omp_nthreads) + 1 max_nsummands = max(max_nsummands, tasks*omp_nthreads) is not obvious. max_nsummands is used to determine an upper bound on how many more bits an integer sum can require compared to the individual summands, and this is used to determine how to partition the real*8 summands and the intermediate sums into vectors of integers. The reason that the maximum is taken in the second step instead of a sum is that the integer vector representing the local sum (per thread) is postprocessed in shr_reprosum_int to reduce the number of bits for each integer to be no more than the assumed maximum for the original integer summands. The sum over the threads and processes is then applied to this modified vector. Therefore, the two sets of sums can be treated separately, and only the maximum used. Comments to this effect are added to the source code. iii) Clarify and correct comments in shr_reprosum.F90 Comments in the shr_reprosum_mod.F90 claim that "The algorithm will calculate the number of levels that is required for the sum to be essentially exact." Here another comment is added to be more precise about what is being claimed, as follows. "(The sum as represented by the integer expansion will be exact, but roundoff may perturb the least significant digit of the returned real*8 representation of the sum.)" Also, legacy references to "mean" are replaced by "sum" in two locations. Marking this BFB as we do not currently define the noI8 CPP token on our target systems. [BFB] 2021-01-27 08:27:46 -0500bf6e57f16a9c2588816a63f52601d0a073325475Fix calc. for max. number of levels when using noI8 and update commentseditcimecime_config/machines/config_machines.xml8920cc86daf7736cfe3d67cf9a2ff863cbd01ddd1611784288000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate mappy serial env [BFB] 2021-01-27 14:51:28 -07008920cc86daf7736cfe3d67cf9a2ff863cbd01dddUpdate mappy serial enveditcime_config/machines/config_machines.xmlremap/make_climo.pypostprocessing/run_e3sm_diags.pydiagnostic_v2_0/E3SM_CLUBB_diag.pycomponents/eam/src/physics/cam/clubb_intr.F90remap/remap_ne30.cshf3199472aaabc1a588fa4a6c4eaea4ed3f2e537e1611797962000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing TTEND_CLUBB back to STEND_CLUBB for use in output statistics. 2021-01-27 19:39:22 -0600f3199472aaabc1a588fa4a6c4eaea4ed3f2e537eI am changing TTEND_CLUBB back to STEND_CLUBB for use in output statistics.editpostprocessing/run_e3sm_diags.pyeditcomponents/eam/src/physics/cam/clubb_intr.F90editdiagnostic_v2_0/E3SM_CLUBB_diag.pyeditremap/remap_ne30.csheditremap/make_climo.pycime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eamcime_config/testmods_dirs/allactive/v2_wcprod/shell_commandscime_config/tests.pyb3c47241b88fe7b3820a2835c90c27fe8afa6da31611801251000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comSome mods to the test, shell commands and the use case files 2021-01-27 18:34:11 -0800b3c47241b88fe7b3820a2835c90c27fe8afa6da3Some mods to the test, shell commands and the use case fileseditcime_config/testmods_dirs/allactive/v2_wcprod/shell_commandseditcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eameditcime_config/tests.pycime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassicime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cplcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartf591c2bae1316d87fc69fcd6bf9800a22ca335921611817060000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comRemoved some unused user_nl* files 2021-01-27 22:57:40 -0800f591c2bae1316d87fc69fcd6bf9800a22ca33592Removed some unused user_nl* filesdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpassieditcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_cpldeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mosartcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mpasocime_config/testmods_dirs/allactive/v2_wcprod/shell_commandscime_config/tests.pycime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/testmods_dirs/allactive/v2_wcprod/READMEcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasocime_config/testmods_dirs/allactive/wcprodrrm/READMEcime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eam006fc1651663546c5e1ccf2ce5f75c2f81aa0b6c1611857392000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comChanges test name to remove "v2" 2021-01-28 10:09:52 -0800006fc1651663546c5e1ccf2ce5f75c2f81aa0b6cChanges test name to remove "v2"deletecime_config/testmods_dirs/allactive/v2_wcprod/READMEaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmdeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_mpasodeletecime_config/testmods_dirs/allactive/v2_wcprod/shell_commandsaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamaddcime_config/testmods_dirs/allactive/wcprodrrm/READMEaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mpasodeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_eameditcime_config/tests.pydeletecime_config/testmods_dirs/allactive/v2_wcprod/user_nl_elmaddcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscomponents/mpas-source1014e7d6de80a2e2a2da437eb576fe8f7f52b7e71611860531000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: propagate ocn_diagnostics_variables to shared/ 2021-01-28 11:02:11 -08001014e7d6de80a2e2a2da437eb576fe8f7f52b7e7Update mpas-source: propagate ocn_diagnostics_variables to shared/editcomponents/mpas-sourcecomponents/mpas-ocean/driver/ocn_comp_mct.F7e5de4fc3123d79597b529212fe940d1988e84641611860603000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate argument lists in ocn_comp_mct for recent MPAS-O changes 2021-01-28 11:03:23 -08007e5de4fc3123d79597b529212fe940d1988e8464Update argument lists in ocn_comp_mct for recent MPAS-O changeseditcomponents/mpas-ocean/driver/ocn_comp_mct.Fcime3bc11f7ff417b114cb5cb565f85e8343243a0bab1611869859000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule Updating to CIME master: 6335dd8b8a02fdf1a6d2d738ac547268f60b1125 Changes: 1) mct: Remove collapse directives for Cray compiler 2) scripts: Better create_test/wait_for_tests integration, cdash improvements for nmls 3) Add support for Chrysalis in saving provenance info 4) Makefile: Remove unused logic 5) PIO2: Update PIO2 to latest version and add testing support for PIO async tests Bug fixes: 1) docs: Fix some documentation of EXEROOT 2) shr: FIx i4 in shr_reposum_mod and add comments 3) pio: bld fixes for issue with recognizing pnetcdf is in the build 4) pio2: pnetcdf detection correction [BFB] 2021-01-28 14:37:39 -07003bc11f7ff417b114cb5cb565f85e8343243a0babUpdate CIME submoduleeditcimediagnostic_v2_0/draw_clubb_budget.pyac260c9254268655a02907f439b084e8dc4a92541611883827000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated draw_clubb_budget.py to reflect the CLUBB stat name change from wp3_bp2 to wp3_pr_turb. 2021-01-28 19:30:27 -0600ac260c9254268655a02907f439b084e8dc4a9254I updated draw_clubb_budget.py to reflect the CLUBB stat name changeeditdiagnostic_v2_0/draw_clubb_budget.pycime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mosart2d919ec994fc4b4a545550df87b2560390ec68561611898900000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdded history fields back with cosp turned on 2021-01-28 21:41:40 -08002d919ec994fc4b4a545550df87b2560390ec6856Added history fields back with cosp turned oneditcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_elmeditcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_eamaddcime_config/testmods_dirs/allactive/wcprodrrm/user_nl_mosarteditcime_config/testmods_dirs/allactive/wcprodrrm/shell_commandscime_config/allactive/config_pesall.xml1cb60ae45e9b72db2d7b8b915b336fe26f51bc231611934543000http://carson.math.uwm.edu/jenkins/user/balwindersinghbalwindersinghbalwindersingh@gmail.comAdds an "S" PE layout anvil 2021-01-29 09:35:43 -06001cb60ae45e9b72db2d7b8b915b336fe26f51bc23Adds an "S" PE layout anvileditcime_config/allactive/config_pesall.xmlcomponents/mpas-sourcefd1b54555674b59ee435c151922b1303174bebcd1612213414000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate framework in mpas-source 2021-02-01 13:03:34 -0800fd1b54555674b59ee435c151922b1303174bebcdUpdate framework in mpas-sourceeditcomponents/mpas-sourcecime_config/machines/config_compilers.xmle5d4c520dde286358e4838902d9aa3ccd7f584ae1612230164000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate CXXFLAGS 2021-02-02 01:42:44 +0000e5d4c520dde286358e4838902d9aa3ccd7f584aeUpdate CXXFLAGSeditcime_config/machines/config_compilers.xmlcomponents/mpas-ocean/driver/ocn_comp_mct.Fcfb7b56ff0d3a695866cf75763deabf58273e20e1612285285000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUse ocn_diagnostics_variables in ocn_comp_mct driver 2021-02-02 09:01:25 -0800cfb7b56ff0d3a695866cf75763deabf58273e20eUse ocn_diagnostics_variables in ocn_comp_mct drivereditcomponents/mpas-ocean/driver/ocn_comp_mct.Fcime_config/machines/config_machines.xml24c44bd73f6a7f0211d89ee701da8db7a6eacea21612285540000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govExplicitly specify UCX transport Explicitly specifying the UCX transport to use with OpenMPI on Chrysalis. This change fixes the data corruption seen with OpenMPI 4.0.4 on Chrysalis 2021-02-02 11:05:40 -060024c44bd73f6a7f0211d89ee701da8db7a6eacea2Explicitly specify UCX transporteditcime_config/machines/config_machines.xmlcomponents/mpas-source86bd07b70f73c2ae66cd89c0cd157681dc903e4e1612288420000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: finish propagating ocn_diagnostics_variables 2021-02-02 09:53:40 -080086bd07b70f73c2ae66cd89c0cd157681dc903e4eUpdate mpas-source: finish propagating ocn_diagnostics_variableseditcomponents/mpas-sourcecime8306e0e8e59469c4bcb3b4b12a691fcbf79d010b1612294877000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate cime again to remove PIO performance degradation 2021-02-02 12:41:17 -07008306e0e8e59469c4bcb3b4b12a691fcbf79d010bUpdate cime again to remove PIO performance degradationeditcimecomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/build-namelist209024f3bd30f549e39cce265c85bb65f9aef13b1612298855000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFixes for F-EAMv1 and F-MMF1 compsets needed after phys name change 2021-02-02 12:47:35 -0800209024f3bd30f549e39cce265c85bb65f9aef13bFixes for F-EAMv1 and F-MMF1 compsets needed after phys name changeeditcomponents/eam/cime_config/config_component.xmleditcomponents/eam/bld/build-namelistcime_config/allactive/config_pesall.xml06675f5a97e3d1eec0388b3b371f1763d68f862e1612338562000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govAdding PE layouts for v2RRM on cori-knl nodes sypd (estimate) 39 1.4 S 77 2.1 M 147 2.7 L 2021-02-02 23:49:22 -080006675f5a97e3d1eec0388b3b371f1763d68f862eAdding PE layouts for v2RRM on cori-knleditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/radiation_data.F90components/eam/src/physics/cam/wv_sat_scream.F90components/eam/src/physics/cam/cloud_diagnostics.F90components/eam/src/physics/cam/microp_driver.F90components/eam/src/physics/cam/micro_p3_utils.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/scream_abortutils.F90components/eam/bld/config_files/definition.xmlcomponents/eam/src/physics/cam/debug_info.F90components/eam/src/physics/cam/physics_utils.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/physpkg.F90components/eam/bld/configurecomponents/eam/src/physics/cam/phys_control.F90components/eam/src/physics/cam/check_energy.F90components/eam/bld/build-namelist86f74f92519f53252df34ba757608aac0092b8bb1612392277000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am cherry-picking git commit 6e2592c from January 13, 2021 and adding it to this new E3SM-CLUBB-SILHS P3 branch: Coupling the P3 microphysics scheme as an option in the E3SMv2_alpha5_59 candidate Conflicts: components/eam/bld/namelist_files/namelist_defaults_cam.xml 2021-02-03 16:44:37 -060086f74f92519f53252df34ba757608aac0092b8bbI am cherry-picking git commit 6e2592c from January 13, 2021 and addingeditcomponents/eam/src/physics/cam/phys_control.F90editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmladdcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/check_energy.F90addcomponents/eam/src/physics/cam/debug_info.F90editcomponents/eam/src/physics/cam/radiation_data.F90addcomponents/eam/src/physics/cam/scream_abortutils.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmladdcomponents/eam/src/physics/cam/wv_sat_scream.F90addcomponents/eam/src/physics/cam/physics_utils.F90editcomponents/eam/bld/configureeditcomponents/eam/src/physics/cam/cloud_diagnostics.F90addcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/physpkg.F90editcomponents/eam/src/physics/cam/microp_driver.F90editcomponents/eam/bld/config_files/definition.xmladdcomponents/eam/src/physics/cam/micro_p3_utils.F90editcomponents/eam/bld/build-namelistcime24788161ada510259f4b664552bbfb2baa851e351612393185000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCIME submodule update Update CIME submodule to 743a2c9670dabcff67058b80b30aac22b2d9633a Changes: 1) Add a new env_case XML value for E3SM: CASE_GROUP Fixes: 1) Fix run_exe handling in CIME [BFB] 2021-02-03 15:59:45 -070024788161ada510259f4b664552bbfb2baa851e35CIME submodule updateeditcimecomponents/mpas-sourcedb1eefe27f363f7abd22b5ca9ca27357b3581a481612397051000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Move surface pressure and zMid before EOS 2021-02-03 16:04:11 -0800db1eefe27f363f7abd22b5ca9ca27357b3581a48update mpas-source: Move surface pressure and zMid before EOSeditcomponents/mpas-sourcecomponents/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/cam/clubb_intr.F90f056a3d4e527c21f52d4fc8d0b92268b3bb70cd21612409015000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix restart NBFB when clubb_ipdf_call_placement=2 Restart tests would fail when clubb_ipdf_call_placement=2 is used. Five component variables (w_1, w_2, varnce_w_1, varnce_w_2, and mixt_frac.) in pdf_params_zm after returning from advance_clubb_core must be saved to restart file and read back to preserve BFB upon restart, when ipdf_call_placement equals ipdf_post_advance_fields (=2) The addition of these 5 variables increase the eam.r file size by 1.6% [BFB] for existing tests before #4033, but they are to be merged together. #4033 will be responsible for all diffs of tests involving active atmos except for wcprod tests. Fixes #4064 2021-02-03 19:23:35 -0800f056a3d4e527c21f52d4fc8d0b92268b3bb70cd2Fix restart NBFB when clubb_ipdf_call_placement=2editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/crm/samxx/vars.hcomponents/eam/src/physics/crm/samxx/timeloop.cppcomponents/eam/src/physics/crm/crm_physics.F90components/eam/src/physics/crm/samxx/vars.cppcomponents/eam/src/physics/crm/samxx/advect_all_scalars.cppcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90components/eam/src/physics/crm/samxx/periodic.cppcomponents/eam/src/physics/crm/samxx/crm.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcomponents/eam/src/physics/crm/samxx/scalar_momentum.cppcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/fftpack5_1d.F90components/eam/src/physics/crm/samxx/fftpack5.F90components/eam/src/physics/crm/samxx/timeloop.hcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/eam/src/physics/crm/samxx/scalar_momentum.ha9207f461ed39aeaea9db851f1f8295e5e61b4b61612454430000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govimplement esmt to samxx 2021-02-04 11:00:30 -0500a9207f461ed39aeaea9db851f1f8295e5e61b4b6implement esmt to samxxeditcomponents/eam/src/physics/crm/samxx/crm.cppeditcomponents/eam/src/physics/crm/samxx/cpp_interface_mod.F90editcomponents/eam/src/physics/crm/crm_physics.F90editcomponents/eam/src/physics/crm/samxx/periodic.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppaddcomponents/eam/src/physics/crm/samxx/scalar_momentum.haddcomponents/eam/src/physics/crm/samxx/fftpack5.F90addcomponents/eam/src/physics/crm/samxx/scalar_momentum.cppeditcomponents/eam/src/physics/crm/samxx/timeloop.heditcomponents/eam/src/physics/crm/samxx/vars.heditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/vars.cppeditcomponents/eam/src/physics/crm/samxx/advect_all_scalars.cppaddcomponents/eam/src/physics/crm/samxx/fftpack5_1d.F90editcomponents/eam/src/physics/crm/samxx/timeloop.cppeditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/eam/src/physics/crm/samxx/test/cpp_driver.F908a2d42389d6d8182111a335f66aa29fc24d77d8a1612456599000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govfix dmdf_write typo 2021-02-04 11:36:39 -05008a2d42389d6d8182111a335f66aa29fc24d77d8afix dmdf_write typoeditcomponents/eam/src/physics/crm/samxx/test/cpp_driver.F90components/mosart/bld/namelist_files/namelist_defaults_mosart.xmlcomponents/mosart/cime_config/buildnmleffdba8f9d4d5333f4fc40ae7bd00880b66f760c1612566173000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd 2 degree mosart grid as option 2021-02-05 17:02:53 -0600effdba8f9d4d5333f4fc40ae7bd00880b66f760cAdd 2 degree mosart grid as optioneditcomponents/mosart/bld/namelist_files/namelist_defaults_mosart.xmleditcomponents/mosart/cime_config/buildnmlcime_config/config_grids.xmla922d7aac2f5e860b20c9e937ca4846e9e6effc11612566452000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd r2_r2 grid alias and r2 domain Add r2_r2 grid alias and r2 domain for the new 2 deg MOSART grid 2021-02-05 17:07:32 -0600a922d7aac2f5e860b20c9e937ca4846e9e6effc1Add r2_r2 grid alias and r2 domaineditcime_config/config_grids.xmlcomponents/eam/src/physics/crm/samxx/post_timeloop.cppcomponents/eam/src/physics/crm/samxx/pre_timeloop.cpp0529897abfc9b2c0a861edf70234596980589ca51612802083000http://carson.math.uwm.edu/jenkins/user/xyuanxyuanxyuan@anl.govfix some VT implementation issues 2021-02-08 11:34:43 -05000529897abfc9b2c0a861edf70234596980589ca5fix some VT implementation issueseditcomponents/eam/src/physics/crm/samxx/post_timeloop.cppeditcomponents/eam/src/physics/crm/samxx/pre_timeloop.cppcime12e639010f259377cf8bafb2f98f7921908226c01612828569000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govCIME submodule update Update CIME submodule to 6f2688798e6d65606514769124c276c943932d4b Fixes: 1) env_mach_specific needs to process all mpirun nodes from machobj. This will fix compy create_newcase problems. [BFB] 2021-02-08 16:56:09 -070012e639010f259377cf8bafb2f98f7921908226c0CIME submodule updateeditcimecomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmlcomponents/mpas-seaice/bld/build-namelistcime_config/tests.pycomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/cime_config/config_component.xml3140a6922217df989b9d720d5054142a7abe91a31612831502000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove _ICG ocn/ice grids, instead cue off compset option SPUNUP 2021-02-08 18:45:02 -06003140a6922217df989b9d720d5054142a7abe91a3Remove _ICG ocn/ice grids, instead cue off compset option SPUNUPeditcime_config/config_grids.xmleditcomponents/mpas-seaice/bld/build-namelisteditcomponents/mpas-seaice/cime_config/buildnmleditcime_config/tests.pyeditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/config_component.xmlcomponents/eam/bld/build-namelista93979c8938afd8680697f8634169559a1934c011612896277000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix for aero_model when chem is none after phys namm change A conditional block in build-namelist for prescribed_aero_model was not updated accordingly after the change for phys name (#4033). This causes prescribed_aero_model to be none and several tests that use modal model as default to fail during runtime. The tests affected are AQP1, RCEMIP and MMF tests [BFB] no impact on other tests. AQP1, RCEMIP, MMF tests will still be BFB but they are the results of #4033. 2021-02-09 10:44:37 -0800a93979c8938afd8680697f8634169559a1934c01Fix for aero_model when chem is none after phys namm changeeditcomponents/eam/bld/build-namelistcomponents/homme/src/theta-l_kokkos/cxx/RemapStateProvider.hpp052cfec7c888c622f0503e64e61dad9a09ac68251612897476000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: bug fix in RemapStateProvider Using ViewT::shmem_size returns *more* than the view size (one value type more, to be precise), which caused the creation of a temporary that was a bit larger than planned. Note: this error was innocuous in real runs (where the fuunctor buffers manager had enough memory to accommodate way more than the RemapStateProvider needed), but caused some valgrind errors during unit tests. 2021-02-09 12:04:36 -0700052cfec7c888c622f0503e64e61dad9a09ac6825Hommexx: bug fix in RemapStateProvidereditcomponents/homme/src/theta-l_kokkos/cxx/RemapStateProvider.hppcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_ut.cppcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_interface.F9074f652821db1ae9a91a3c60c7784826cc14c718f1612899833000http://carson.math.uwm.edu/jenkins/user/lbertaglbertaglbertag@sandia.govHommexx: test also tracers in remap_theta_ut 2021-02-09 12:43:53 -070074f652821db1ae9a91a3c60c7784826cc14c718fHommexx: test also tracers in remap_theta_uteditcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_ut.cppeditcomponents/homme/test_execs/thetal_kokkos_ut/remap_theta_interface.F90components/mpas-sourcee66659c23ade4046be7b0132545fddad0f6da9531612913798000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: Improved sea ice column error messages 2021-02-09 17:36:38 -0600e66659c23ade4046be7b0132545fddad0f6da953Update mpas-source: Improved sea ice column error messageseditcomponents/mpas-sourcecomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-seaice/cime_config/config_component.xmlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/cime_config/config_component.xmlcime_config/allactive/config_compsets.xml72cf0c3274b9c71844b95232534b7da0a458b9501612914579000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govChange from keying off %SPUNUP to including SOI in compset longname 2021-02-09 17:49:39 -060072cf0c3274b9c71844b95232534b7da0a458b950Change from keying off %SPUNUP to including SOI in compset longnameeditcomponents/mpas-seaice/cime_config/config_component.xmleditcime_config/allactive/config_compsets.xmleditcomponents/mpas-ocean/cime_config/config_component.xmleditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90ac1961793f4b2f0b93f6365f30ca42209898dcf21612945699000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am altering P3 for SILHS by making changes equivalent to the microp_uniform flag that is found in MG microphysics. Within the context of P3, I am using SILHS preprocessor flags to accomplish this. 2021-02-10 02:28:19 -0600ac1961793f4b2f0b93f6365f30ca42209898dcf2I am altering P3 for SILHS by making changes equivalent to theeditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/physpkg.F90506f8895e7838229bc18e47e5bb0740ec0d57af91612995136000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govFix an issue that uses dcape related codes when ZM is not used A block of codes in tphysac access pbuf for T_STAR and Q_STAR that are used for dcape calculation. The block should only be invoked when deep_scheme = 'ZM' but proper condition was not applied, causing the test F-EAMv1-AQP1.eam-clubb_only to fail as it sets deep_scheme = 'off'. The fix now adds a condition on deep_scheme. The above test only became an issue after #4033 which set default zmconv_trigdcape_ull = .true. [BFB] for all tests, while F-EAMv1-AQP1.eam-clubb_only would report diff due to #4033. 2021-02-10 14:12:16 -0800506f8895e7838229bc18e47e5bb0740ec0d57af9Fix an issue that uses dcape related codes when ZM is not usededitcomponents/eam/src/physics/cam/physpkg.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnml8fddd73862282f3d34eb023426d69894417b3d0a1613057834000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates MPAS ocean and sea ice conditions Updates apply to the EC30to60E2r2 and WC14 only, does not update 1900 conditions 2021-02-11 09:37:14 -06008fddd73862282f3d34eb023426d69894417b3d0aUpdates MPAS ocean and sea ice conditionseditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcime_config/config_grids.xmlca65b204e19e487a7ba250d049b4be4245f2fd781613058667000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates defaults for EC30to60 and WC14 Some parameters were not consistent between these meshes. GM_closure=constant is used for both meshes and the eddy ramp is enabled There was also a small configuration error for GMPAS-JRA for the WC14 mesh that is fixed as well 2021-02-11 09:51:07 -0600ca65b204e19e487a7ba250d049b4be4245f2fd78Updates defaults for EC30to60 and WC14editcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcime_config/config_grids.xmlcomponents/mpas-source9df320f66919ce6387e3c0da5d45eee28f1814211613065000000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: make ocean init mode optional 2021-02-11 09:36:40 -08009df320f66919ce6387e3c0da5d45eee28f181421update mpas-source: make ocean init mode optionaleditcomponents/mpas-sourcecomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelistdcc4044d2e5e6b1d5743bc3266cd56802a65a0741613065010000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate E3SM bld scripts to reflect changes to the ocean Registry 2021-02-11 09:36:50 -0800dcc4044d2e5e6b1d5743bc3266cd56802a65a074Update E3SM bld scripts to reflect changes to the ocean Registryeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-group-listeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-seaice/cime_config/buildnmlcime_config/config_grids.xmlcime_config/tests.pycomponents/mpas-ocean/cime_config/buildnml6e3483f2c63aa8ce424b7ea5a9b756b8d487f63e1613076653000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove the "-1900" grids as a mechanism for designating different ICs 2021-02-11 14:50:53 -06006e3483f2c63aa8ce424b7ea5a9b756b8d487f63eRemove the "-1900" grids as a mechanism for designating different ICseditcime_config/tests.pyeditcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmleditcime_config/config_grids.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F9074917ed17f50ad60d9f1dc7a1b4b3354c8bb5ec91613079000000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am exporting the fields from P3 microphysics that are necessary for use in the SILHS hole filler. 2021-02-11 15:30:00 -060074917ed17f50ad60d9f1dc7a1b4b3354c8bb5ec9I am exporting the fields from P3 microphysics that are necessaryeditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/micro_p3.F90cime_config/allactive/config_pesall.xmlc58f43e168b497bc6b80acaca02ab288f46b150d1613080629000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd default layouts for G-cases using EC30to60 on anvil/chrysalis/compy 2021-02-11 15:57:09 -0600c58f43e168b497bc6b80acaca02ab288f46b150dAdd default layouts for G-cases using EC30to60 on anvil/chrysalis/compyeditcime_config/allactive/config_pesall.xmlcime_config/config_grids.xmlcfefcb17588af73cd2619e3411c2442bf5a39e6d1613081602000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd domain file for r2 Change mask to oQU480 for r2_r2 and add a matching domain file. This allows the case to run 2021-02-11 16:13:22 -0600cfefcb17588af73cd2619e3411c2442bf5a39e6dAdd domain file for r2editcime_config/config_grids.xmlcomponents/mpas-sourceb78968bd09feced267fb913e886157807dff6c6d1613148487000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fix core_ocean submodule checks in cmake 2021-02-12 08:48:07 -0800b78968bd09feced267fb913e886157807dff6c6dupdate mpas-source: Fix core_ocean submodule checks in cmakeeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmld1fc1278684f44452f6a27bd36e2c1efeaff635d1613157443000http://carson.math.uwm.edu/jenkins/user/ndkeenndkeenndkeen@lbl.govfor chrsyalis: initial set of PE layouts for RRMv2 2021-02-12 13:17:23 -0600d1fc1278684f44452f6a27bd36e2c1efeaff635dfor chrsyalis: initial set of PE layouts for RRMv2editcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml1339c4fe82af428650c72d2f001f68dfc54628ab1613164269000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate default ne30-WC pelayout 2021-02-12 15:11:09 -06001339c4fe82af428650c72d2f001f68dfc54628abUpdate default ne30-WC pelayouteditcime_config/allactive/config_pesall.xmlcime_config/allactive/config_pesall.xml997d1639008d25fdc347470fb5551c6a8bb2cba21613184827000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govDefault to a 60-node pelayout 2021-02-12 20:53:47 -0600997d1639008d25fdc347470fb5551c6a8bb2cba2Default to a 60-node pelayouteditcime_config/allactive/config_pesall.xmlcime_config/machines/Depends.cray.cmake482bae6ffe7cdc76bfd9ffb1bdc48bd3072476d31613428773000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate cray-specific flags 2021-02-15 22:39:33 +0000482bae6ffe7cdc76bfd9ffb1bdc48bd3072476d3Update cray-specific flagseditcime_config/machines/Depends.cray.cmakecomponents/eam/src/chemistry/mozart/charge_neutrality.F90components/eam/src/chemistry/utils/mo_msis_ubc.F90components/eam/src/physics/waccm/qbo.F90components/homme/src/share/vertremap_base.F90components/eam/src/chemistry/utils/mo_flbc.F90components/eam/src/control/wrap_nf.F90components/eam/src/physics/cam/physics_update_mod.F90components/eam/src/chemistry/bulk_aero/dust_model.F90components/eam/src/physics/waccmx/majorsp_diffusion.F90components/eam/src/control/scamMod.F90components/eam/src/chemistry/modal_aero/dust_model.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/dynamics/eul/eul_single_column_mod.F90components/eam/src/chemistry/mozart/mo_neu_wetdep.F90components/eam/src/chemistry/modal_aero/seasalt_model.F90components/eam/src/chemistry/utils/modal_aero_deposition.F90components/eam/src/chemistry/mozart/mo_snoe.F90cime_config/machines/config_compilers.xmlcomponents/eam/src/physics/cam/rad_constituents.F90components/eam/src/physics/cam/phys_debug.F90components/eam/src/physics/waccm/iondrag.F90components/eam/src/chemistry/mozart/chemistry.F90components/eam/src/chemistry/bulk_aero/aero_model.F90components/eam/src/physics/cam/physics_types.F90components/eam/src/physics/cam/sslt_rebin.F90components/homme/src/share/control_mod.F90components/eam/src/chemistry/mozart/mo_chm_diags.F90components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90components/eam/src/dynamics/se/se_single_column_mod.F90components/eam/src/chemistry/bulk_aero/seasalt_model.F90components/eam/src/control/cam_history.F90components/eam/src/physics/cam/constituents.F90components/eam/src/chemistry/mozart/cfc11star.F90components/eam/src/physics/cam/check_energy.F9026a9f0b71f83bba8369598252dfb997f1467fe891613429294000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate FFLAGS and rename abort redeclarations Add '-vector0' and rename use-associated name 'abort'. 2021-02-15 22:48:14 +000026a9f0b71f83bba8369598252dfb997f1467fe89Update FFLAGS and rename abort redeclarationseditcomponents/eam/src/chemistry/mozart/mo_chm_diags.F90editcomponents/eam/src/physics/cam/check_energy.F90editcomponents/eam/src/physics/cam/phys_debug.F90editcomponents/eam/src/physics/cam/sslt_rebin.F90editcomponents/homme/src/share/control_mod.F90editcomponents/eam/src/physics/waccm/iondrag.F90editcomponents/eam/src/control/scamMod.F90editcomponents/eam/src/chemistry/utils/mo_flbc.F90editcomponents/eam/src/chemistry/bulk_aero/dust_model.F90editcomponents/eam/src/physics/cam/constituents.F90editcomponents/eam/src/physics/waccmx/majorsp_diffusion.F90editcomponents/eam/src/chemistry/mozart/cfc11star.F90editcomponents/eam/src/chemistry/mozart/chemistry.F90editcomponents/eam/src/dynamics/eul/eul_single_column_mod.F90editcomponents/eam/src/dynamics/se/se_single_column_mod.F90editcomponents/eam/src/chemistry/mozart/charge_neutrality.F90editcomponents/eam/src/chemistry/utils/mo_msis_ubc.F90editcomponents/eam/src/chemistry/mozart/mo_tgcm_ubc.F90editcomponents/eam/src/physics/waccm/qbo.F90editcomponents/eam/src/chemistry/modal_aero/seasalt_model.F90editcime_config/machines/config_compilers.xmleditcomponents/eam/src/chemistry/bulk_aero/seasalt_model.F90editcomponents/eam/src/chemistry/bulk_aero/aero_model.F90editcomponents/eam/src/chemistry/mozart/mo_snoe.F90editcomponents/eam/src/chemistry/mozart/mo_neu_wetdep.F90editcomponents/eam/src/physics/cam/physics_types.F90editcomponents/eam/src/control/wrap_nf.F90editcomponents/eam/src/chemistry/modal_aero/dust_model.F90editcomponents/eam/src/chemistry/utils/modal_aero_deposition.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90editcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/physics/cam/physics_update_mod.F90editcomponents/eam/src/physics/cam/rad_constituents.F90editcomponents/homme/src/share/vertremap_base.F90cime_config/machines/config_machines.xml545565e1711652e2a5ac5b74f5002370e119482c1613448531000http://carson.math.uwm.edu/jenkins/user/azamatazamatazamat@mcs.anl.govUpdate cray modules 2021-02-16 04:08:51 +0000545565e1711652e2a5ac5b74f5002370e119482cUpdate cray moduleseditcime_config/machines/config_machines.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml99b5cada93bca6693e5348b864b6b8a7a0a56d271613536991000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comunifies WC14 and EC30to60 del2 and del4 2021-02-16 22:43:11 -060099b5cada93bca6693e5348b864b6b8a7a0a56d27unifies WC14 and EC30to60 del2 and del4editcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/eam/src/physics/cam/nudging.F90322fae08c0d585e93cf347fd57e86fe2e8d81af71613547642000http://carson.math.uwm.edu/jenkins/user/shixuan.zhangshixuan.zhangshixuan.zhang@pnnl.govFix an issue in nudging code This commits addresses two issues in nudging code (PR#4098) 1. Generally a user would like to run with nudging turned on if a nudging data file is mentioned in the namelist. However, current nudging code would allow the model to continue to run even if the nudging data file is not found. The code changes are made to add an endrun call so that the model exists with an error message if nudging file is not found rather than silently (or with a warning) continuing with the nudging turned OFF. 2. The character length of the nudging file name is defined as 80 in current nudging.f90. If the nudging file name is longer than 80 characters, the nudging code can not get the full name for the nudging file. In this way, nudging will not be applied. To avoid this problem, code changes are made to extend the character length of the nudging file name to 256. [BFB]: no impact on other tests. 2021-02-16 23:40:42 -0800322fae08c0d585e93cf347fd57e86fe2e8d81af7Fix an issue in nudging codeeditcomponents/eam/src/physics/cam/nudging.F90components/mpas-sourcec1906b954153083b18c10d7b33acf34e46f83d2a1613585374000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-ocean: Fixes shortwave absorption for shallow cells 2021-02-17 11:09:34 -0700c1906b954153083b18c10d7b33acf34e46f83d2aUpdate mpas-ocean: Fixes shortwave absorption for shallow cellseditcomponents/mpas-sourcecomponents/eam/src/control/cam_history.F9006e27230b24d04583bdb80a37daeb9b2075d604b1613615992000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAllow time:point cell method For any variable output as I (instantaneous) set the cell_method: time to "point" per CF requirements. 2021-02-17 20:39:52 -060006e27230b24d04583bdb80a37daeb9b2075d604bAllow time:point cell methodeditcomponents/eam/src/control/cam_history.F90components/mpas-source361d427f808cce1dea21f0248d23aa3f03aee4971613668021000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Simplify computing landIcePressure and vertical grid in ocean init mode 2021-02-18 09:07:01 -0800361d427f808cce1dea21f0248d23aa3f03aee497update mpas-source: Simplify computing landIcePressure and vertical grid in ocean init modeeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/subcol_SILHS.F90run_silhs_anvil_gust_wP3.cshcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/physpkg.F90b3e799c1b10e9d3b463a0e80cc8930433b9271c01613672873000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMade changes necessary for CLUBB-SILHS-P3 to compile. 2021-02-18 12:27:53 -0600b3e799c1b10e9d3b463a0e80cc8930433b9271c0Made changes necessary for CLUBB-SILHS-P3 to compile.editcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90addrun_silhs_anvil_gust_wP3.csheditcomponents/eam/src/physics/cam/physpkg.F90components/mpas-seaice/cime_config/buildnmlcomponents/mpas-ocean/cime_config/buildnmlaf5142c0922e94531386fbc2642fb472ce77bd9b1613686706000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govReplace "+=" for grid related settings with "=" 2021-02-18 16:18:26 -0600af5142c0922e94531386fbc2642fb472ce77bd9bReplace "+=" for grid related settings with "="editcomponents/mpas-seaice/cime_config/buildnmleditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-source17cc5124d47b1a16ac0baadcc2c1170d9fe8cac71613690389000http://carson.math.uwm.edu/jenkins/user/aktaktakt@lanl.govUpdate mpas-source: seaice regional stats bug 2021-02-18 17:19:49 -060017cc5124d47b1a16ac0baadcc2c1170d9fe8cac7Update mpas-source: seaice regional stats bugeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/ndrop.F90components/eam/src/chemistry/mozart/lin_strat_chem.F90components/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/physics/cam/micro_mg_cam.F90components/eam/src/physics/cam/aer_rad_props.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/cospsimulator_intr.F90components/eam/src/physics/cam/cloud_cover_diags.F90components/eam/src/physics/cam/cam_diagnostics.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/ndrop_bam.F90ee102dbdff20cfd3bd3855881b7bca05809274f51613693317000http://carson.math.uwm.edu/jenkins/user/zhang40zhang40zhang40@llnl.goveam h0 units CF compliance 2021-02-18 16:08:37 -0800ee102dbdff20cfd3bd3855881b7bca05809274f5eam h0 units CF complianceeditcomponents/eam/src/physics/cam/aer_rad_props.F90editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/micro_mg_cam.F90editcomponents/eam/src/physics/cam/ndrop.F90editcomponents/eam/src/physics/cam/cospsimulator_intr.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/cam/cloud_cover_diags.F90editcomponents/eam/src/chemistry/mozart/lin_strat_chem.F90editcomponents/eam/src/physics/cam/ndrop_bam.F90editcomponents/eam/src/chemistry/modal_aero/aero_model.F90components/eam/src/control/cam_history_support.F90components/eam/src/control/cam_history.F90a37914339abe6772992affb6b16678b409df4a6b1613702134000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAllow standard_name on variable in EAM Steve Goldhaber had started to add standard_name. Finish that and, if defined, add it to the variable attribute. Update CF convention to 1.7 Change FillVaLUE TO NC_FILL (hardcoded) Add CMIP global attribute "product" 2021-02-18 20:35:34 -0600a37914339abe6772992affb6b16678b409df4a6bAllow standard_name on variable in EAMeditcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/control/cam_history_support.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F90components/eam/src/physics/cam/modal_aer_opt.F90components/eam/src/physics/cam/cloud_diagnostics.F90f6b00795640f2861ebdecadc55751e8ba0d404a71613712956000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd standard_names to some EAM output variables Add standard_names to EAM output variables that were published as part of CMIP6 AND required no conversions. 2021-02-18 23:35:56 -0600f6b00795640f2861ebdecadc55751e8ba0d404a7Add standard_names to some EAM output variableseditcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/physics/cam/modal_aer_opt.F90editcomponents/eam/src/physics/cam/cloud_diagnostics.F90editcomponents/eam/src/physics/cam/cam_diagnostics.F90components/eam/src/physics/crm/physpkg.F90e61094e7f30716254f591fbc6f05d055fa270ac31613753068000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd dummy args to the call of aircraft_emit_init for the crm version. 2021-02-19 08:44:28 -0800e61094e7f30716254f591fbc6f05d055fa270ac3Add dummy args to the call of aircraft_emit_init for the crm version.editcomponents/eam/src/physics/crm/physpkg.F90components/eam/src/control/cam_history_support.F90components/eam/src/physics/icarus-scops/icarus.f90components/eam/src/control/cam_history.F907d7468e70fc29a3d4f96399b0402523d52aa5d001613764434000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd more CMIP attributes Add realm, institution and source_id CMIP global attributes Change Fillvalue to CMIP default of 1.e+20 2021-02-19 13:53:54 -06007d7468e70fc29a3d4f96399b0402523d52aa5d00Add more CMIP attributeseditcomponents/eam/src/control/cam_history.F90editcomponents/eam/src/control/cam_history_support.F90editcomponents/eam/src/physics/icarus-scops/icarus.f90components/eam/src/physics/crm/physpkg.F9032c37348b313ca42ab91a5f0d273e5d5d2c3a0b51613768907000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdditional changes to crm/physpkg.F90 made to cam/physpkg.F90 in this PR 2021-02-19 13:08:27 -080032c37348b313ca42ab91a5f0d273e5d5d2c3a0b5Additional changes to crm/physpkg.F90 made to cam/physpkg.F90 in this PReditcomponents/eam/src/physics/crm/physpkg.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/src/physics/cam/nudging.F90e1c9c0460e4c2254e003990373b20578732215701613780806000http://carson.math.uwm.edu/jenkins/user/shixuan.zhangshixuan.zhangshixuan.zhang@pnnl.govFix an issue in nudging code This commits further enhances the code changes that are made in nudging.f90 to adrress the issues of nudging when the nudged data files are not found: 1. For the endrun call when nudging data is not found, the error message is improved to print the F90 file name and line number where the error occurred. 2. Add a logical namelist variable "Nudge_Allow_Missing_File" to allow the user to decide whether the model should exist or conitinue to run when the nudged data files are not found 2021-02-19 16:26:46 -0800e1c9c0460e4c2254e003990373b2057873221570Fix an issue in nudging codeeditcomponents/eam/src/physics/cam/nudging.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/namelist_mod.F90components/homme/src/share/viscosity_base.F90components/homme/src/share/gllfvremap_util_mod.F90components/homme/test/tool/READMEcomponents/homme/src/tool/tool_main.F90components/homme/src/share/prim_driver_base.F90components/homme/src/share/control_mod.F90components/homme/test/tool/ncl/topospectra.ncl3c0c373a6b0d9c771fbd1fba25f749615b6a56221613934009000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgupdate to topo generation tool new p2 interpolation filter option ability of pg2/gll tool to read GLL data instead of PG4 data 2021-02-21 13:00:09 -06003c0c373a6b0d9c771fbd1fba25f749615b6a5622update to topo generation tooleditcomponents/homme/src/share/namelist_mod.F90editcomponents/homme/src/tool/tool_main.F90editcomponents/homme/test/tool/READMEeditcomponents/homme/src/share/prim_driver_base.F90editcomponents/homme/src/share/control_mod.F90editcomponents/homme/src/share/viscosity_base.F90editcomponents/homme/src/share/gllfvremap_util_mod.F90editcomponents/homme/test/tool/ncl/topospectra.nclcomponents/homme/src/share/interpolate_mod.F90adcc52bc821e0940a90ac8148db57046edd03d441613967327000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgimprove omp reduction 2021-02-21 21:15:27 -0700adcc52bc821e0940a90ac8148db57046edd03d44improve omp reductioneditcomponents/homme/src/share/interpolate_mod.F90components/homme/src/share/gllfvremap_util_mod.F900da380d6465f3593463a1c8ef65415d0180b94531613969156000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgfix incorrect comment 2021-02-21 21:45:56 -07000da380d6465f3593463a1c8ef65415d0180b9453fix incorrect commenteditcomponents/homme/src/share/gllfvremap_util_mod.F90components/homme/src/share/interpolate_mod.F90df2af18749715ff72648c54e6abb6283ba7ec8f21614026477000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgremove SHARED omp directive 2021-02-22 13:41:17 -0700df2af18749715ff72648c54e6abb6283ba7ec8f2remove SHARED omp directiveeditcomponents/homme/src/share/interpolate_mod.F90components/elm/cime_config/config_component.xmlcomponents/eam/cime_config/config_component.xml36d046a367f7c1b352b9b433f9e55e503fe6affe1614030383000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd optional pattern matching for SOI in compset names 2021-02-22 15:46:23 -060036d046a367f7c1b352b9b433f9e55e503fe6affeAdd optional pattern matching for SOI in compset nameseditcomponents/eam/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LRtunedHR.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_atmmod.xml546b85258733f36fc9a29c37d1a553189d579ac11614031454000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove some use_case files not used in v2 2021-02-22 14:04:14 -0800546b85258733f36fc9a29c37d1a553189d579ac1Remove some use_case files not used in v2deletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LRtunedHR.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_atmmod.xmlcomponents/eam/src/physics/cam/cloud_diagnostics.F9071d63b3917f17c68b2ab8b65f05257bf064166d11614033339000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFix standard_name for TGCLDCWP TGCLDLWP After review, fix standard_name for TGCLDCWP TGCLDLWP 2021-02-22 16:35:39 -060071d63b3917f17c68b2ab8b65f05257bf064166d1Fix standard_name for TGCLDCWP TGCLDLWPeditcomponents/eam/src/physics/cam/cloud_diagnostics.F90components/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F90833bf54c25266dad0f1d9748e529e83fb0ff5c5e1614034744000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govAdd standard_names for FLUT, SWCF, LWCF, PRECC, PRECT 2021-02-22 14:59:04 -0800833bf54c25266dad0f1d9748e529e83fb0ff5c5eAdd standard_names for FLUT, SWCF, LWCF, PRECC, PRECTeditcomponents/eam/src/physics/cam/cam_diagnostics.F90editcomponents/eam/src/physics/rrtmg/radiation.F90components/elm/src/main/histFileMod.F90components/elm/src/main/ncdio_pio.F90.in4837b70fda4d46a827d0efe220d89eb3bc98cde31614047034000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd ability to pass standard_name when defining history Add ability to pass standard_name as an argument in the history file routines. 2021-02-22 20:23:54 -06004837b70fda4d46a827d0efe220d89eb3bc98cde3Add ability to pass standard_name when defining historyeditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/ncdio_pio.F90.incomponents/eam/src/physics/rrtmg/radiation.F90components/eam/src/physics/cam/cam_diagnostics.F906b975b39cafe4e038d4d01c0de20039bd62488901614053464000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove standard_names for PRECC, PRECT, FLUT 2021-02-22 20:11:04 -08006b975b39cafe4e038d4d01c0de20039bd6248890Remove standard_names for PRECC, PRECT, FLUTeditcomponents/eam/src/physics/rrtmg/radiation.F90editcomponents/eam/src/physics/cam/cam_diagnostics.F90components/elm/src/main/histFileMod.F90e9998e1943ef7ca0a165fe106529b59f257a45841614058104000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govMake sure standard_name is output Add rest of code to add standard_name to variable attribute. 2021-02-22 23:28:24 -0600e9998e1943ef7ca0a165fe106529b59f257a4584Make sure standard_name is outputeditcomponents/elm/src/main/histFileMod.F90components/mpas-source292ace29250fb713314e3820845bb572b5fee7451614102606000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Add Wright (1997) equation of state 2021-02-23 09:50:06 -0800292ace29250fb713314e3820845bb572b5fee745update mpas-source: Add Wright (1997) equation of stateeditcomponents/mpas-sourcecimed9a147b5740429662af6d54ca24543d4b701c2e31614104431000http://carson.math.uwm.edu/jenkins/user/jgfoucajgfoucajgfouca@sandia.govUpdate CIME submodule To 2b49cf54f1fb0a53832762dc29f19fc31c491d31 Changes: 1) Adds support of DATM_MODE=CLM1PT for ELM 2) Update driver-mct support for trigrid configuration where lnd is not on the atm grid Fixes: 1) Fix compare test results undefined 2) SCORPIO needs _PNETCDF 3) scripts_regression_tests: Fixes cleaning up only on success 4) bless/compare_test_results should not process build-only tests 5) wait_for_tests: Make update success more robust [BFB] 2021-02-23 11:20:31 -0700d9a147b5740429662af6d54ca24543d4b701c2e3Update CIME submoduleeditcimecomponents/eam/bld/namelist_files/use_cases/1850_cam4_trop_bam.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_linoz_plmod_plus_resus.xmlcomponents/eam/bld/namelist_files/use_cases/1950_eam_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5.xmlcomponents/eam/bld/namelist_files/use_cases/1850S_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-HR.xmlcime_config/tests.pycomponents/eam/cime_config/config_component.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-LR.xmlcomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-HR.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4_2xco2.xmlcime_config/allactive/config_compsets.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/namelist_files/use_cases/1850_cam4_super_fast_llnl.xmlcomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LR.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_cosp.xmlcomponents/eam/bld/namelist_files/use_cases/2000_cam5_plmod_plus_resus.xmlb6607f1b41a4531b514fd55b2fbd2a340f3b8a081614113647000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCleanup of unused compsets and grids for v2 This PR continues to clean up obsolete compsets from v1 and the associated entries in the config files and the use_case files. Default settings in namelist_defaults_eam.xml for non-SE grids and older physpkg are also removed. Several new compset aliases are also added: WCYCL1950, WCYCL20TR, F1850 and F1950. The longname for WCYCL1950 and WCYCL20TR (and pre-existing W1850) will need to be updated after PR #4085. So do hThe compset pattern matching for EAM use caae. Tests using the following compsets will be renamed as 'v1' is now dropped from the compset names. F-EAMv1-AQP1, F-EAMv1-RCEMIP. There are five such tests. [BFB] 2021-02-23 12:54:07 -0800b6607f1b41a4531b514fd55b2fbd2a340f3b8a08Cleanup of unused compsets and grids for v2deletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_plmod_plus_resus.xmleditcime_config/allactive/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5.xmleditcime_config/tests.pydeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_super_fast_llnl.xmleditcomponents/eam/cime_config/config_component.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_cosp.xmldeletecomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-LR.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_trop_bam.xmldeletecomponents/eam/bld/namelist_files/use_cases/2000_cam5_linoz_plmod_plus_resus.xmldeletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-HR.xmladdcomponents/eam/bld/namelist_files/use_cases/1950_eam_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/2010_cam5_CMIP6-HR.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850S_cam5_CMIP6.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4_2xco2.xmldeletecomponents/eam/bld/namelist_files/use_cases/1950_cam5_CMIP6-LR.xmleditcomponents/eam/cime_config/config_compsets.xmldeletecomponents/eam/bld/namelist_files/use_cases/1850_cam4.xmlcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/mpas-ocean/bld/build-namelist9fd34fb41396c87f6ae9856c110669fe25fc52e91614117910000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate bld scripts to match changes in ocean core Registry 2021-02-23 16:05:10 -06009fd34fb41396c87f6ae9856c110669fe25fc52e9Update bld scripts to match changes in ocean core Registryeditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioneditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/build-namelist-group-listcomponents/eam/src/physics/cam/subcol.F90components/eam/src/physics/cam/subcol_SILHS.F90run_silhs_anvil_gust_wP3.cshcomponents/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90d0ded0101781d7c07b9c45767e1f92ab079ff63f1614122404000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for my changes so far to run P3. 2021-02-23 17:20:04 -0600d0ded0101781d7c07b9c45767e1f92ab079ff63fUpdated for my changes so far to run P3.editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/physpkg.F90editrun_silhs_anvil_gust_wP3.csheditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol.F90components/elm/src/main/elm_varctl.F90components/elm/src/main/histFileMod.F90d49a443f0d59525c106e290d9c1e40750b0c2abf1614123826000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd and update global attributies Add CMIP global attributes update CF to 1.7 2021-02-23 17:43:46 -0600d49a443f0d59525c106e290d9c1e40750b0c2abfAdd and update global attributieseditcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/main/elm_varctl.F90components/elm/src/data_types/ColumnDataType.F902e5d9c2d62cfb7ccafb90ce5b60eb666ccb1f2ef1614123893000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govAdd a couple of standard names Add a couple of standard names that were part of CMIP6 to ELM history. 2021-02-23 17:44:53 -06002e5d9c2d62cfb7ccafb90ce5b60eb666ccb1f2efAdd a couple of standard nameseditcomponents/elm/src/data_types/ColumnDataType.F90components/elm/src/data_types/ColumnDataType.F90components/elm/src/biogeophys/WaterStateType.F90components/elm/src/main/ncdio_pio.F90.incomponents/elm/src/main/glcDiagnosticsMod.F90components/elm/src/main/histFileMod.F90components/elm/src/biogeochem/CropType.F90components/elm/src/biogeophys/SurfaceAlbedoType.F90components/elm/src/main/glc2lndMod.F90components/elm/src/utils/elm_time_manager.F90components/elm/src/data_types/CNStateType.F90components/elm/src/biogeochem/CH4Mod.F90components/elm/src/biogeophys/EnergyFluxType.F90components/elm/src/biogeophys/CanopyStateType.F90components/elm/src/main/subgridRestMod.F90components/elm/src/main/elm_varcon.F90components/elm/src/biogeophys/SoilStateType.F900a1c04dbe83e6ff2aa64fa078534b736ef60c06c1614143322000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govFix CF units and change spval Replace non-CF units "none" and "unitless" with "1". Replace spval with the CMIP value 1.e+20 Replace cell_method "instantaneous" with "point". 2021-02-23 23:08:42 -06000a1c04dbe83e6ff2aa64fa078534b736ef60c06cFix CF units and change spvaleditcomponents/elm/src/data_types/CNStateType.F90editcomponents/elm/src/biogeophys/EnergyFluxType.F90editcomponents/elm/src/main/histFileMod.F90editcomponents/elm/src/biogeochem/CropType.F90editcomponents/elm/src/biogeochem/CH4Mod.F90editcomponents/elm/src/biogeophys/SoilStateType.F90editcomponents/elm/src/main/subgridRestMod.F90editcomponents/elm/src/biogeophys/CanopyStateType.F90editcomponents/elm/src/main/glc2lndMod.F90editcomponents/elm/src/data_types/ColumnDataType.F90editcomponents/elm/src/biogeophys/WaterStateType.F90editcomponents/elm/src/main/glcDiagnosticsMod.F90editcomponents/elm/src/utils/elm_time_manager.F90editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/main/ncdio_pio.F90.ineditcomponents/elm/src/biogeophys/SurfaceAlbedoType.F90components/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/eam/cime_config/config_component.xml0208ec62e9f49f0ad1ce2ed9d357587eeab79d741614143658000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govPut back use_case 1850_cam5_av1c-04p2 to avoid diff of A_WCYCL1850 tests 2021-02-23 21:14:18 -08000208ec62e9f49f0ad1ce2ed9d357587eeab79d74Put back use_case 1850_cam5_av1c-04p2 to avoid diff of A_WCYCL1850 testseditcomponents/eam/cime_config/config_component.xmladdcomponents/eam/bld/namelist_files/use_cases/1850_cam5_av1c-04p2.xmlcomponents/mosart/src/riverroute/RtmIO.F90components/mosart/src/riverroute/RtmVar.F90components/mosart/src/riverroute/RtmHistFlds.F90components/mosart/src/riverroute/RtmTimeManager.F90components/mosart/src/riverroute/RtmHistFile.F90b811225446dc1c38a84be39fecea3fbf5e914c051614145888000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govUpdate MOSART output for CF and CMIP Update MOSART output for CF and CMIP CMIP: replace spval with 1.e_20 CMIP: add global attributes CF: replace non-compliant units "unitless" and "none". CF: Replace "instantaneous" cell_method with "point". 2021-02-23 23:51:28 -0600b811225446dc1c38a84be39fecea3fbf5e914c05Update MOSART output for CF and CMIPeditcomponents/mosart/src/riverroute/RtmVar.F90editcomponents/mosart/src/riverroute/RtmHistFlds.F90editcomponents/mosart/src/riverroute/RtmTimeManager.F90editcomponents/mosart/src/riverroute/RtmIO.F90editcomponents/mosart/src/riverroute/RtmHistFile.F90components/eam/cime_config/config_compsets.xml13b647edd96bd8962578d8fb1df0fdb8120b72951614180516000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRestore accidentally removed compset FSCM5A97 2021-02-24 07:28:36 -080013b647edd96bd8962578d8fb1df0fdb8120b7295Restore accidentally removed compset FSCM5A97editcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-source2f03689881f1de211675bd3ee53f3afa68f2d18e1614184039000http://carson.math.uwm.edu/jenkins/user/mturnermturnermturner@lanl.govUpdate mpas-source: pgi syntax fix 2021-02-24 08:27:19 -08002f03689881f1de211675bd3ee53f3afa68f2d18eUpdate mpas-source: pgi syntax fixeditcomponents/mpas-source.circleci/config.yml83707617b3806c686b3f8e16e75510a1884a11141614283575000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduRun CircleCI on master branch only 2021-02-25 14:06:15 -060083707617b3806c686b3f8e16e75510a1884a1114Run CircleCI on master branch onlyedit.circleci/config.ymlcomponents/mpas-source734a30aa4e3dfdf20abd99a325651b6b9989f4fe1614285453000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Removes shortwave energy conservation fix 2021-02-25 12:37:33 -0800734a30aa4e3dfdf20abd99a325651b6b9989f4feupdate mpas-source: Removes shortwave energy conservation fixeditcomponents/mpas-sourcecomponents/eam/cime_config/config_component.xmle3c517d63831acd50886a66966bcbe8292c4d39d1614286321000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govRemove 1950 and 2010 specific build-config entries The entries with -DAPPLY_POST_DECK_BUGFIXES which is for v1. 2021-02-25 12:52:01 -0800e3c517d63831acd50886a66966bcbe8292c4d39dRemove 1950 and 2010 specific build-config entrieseditcomponents/eam/cime_config/config_component.xmlcomponents/elm/src/main/elm_varcon.F90components/elm/src/main/ncdio_pio.F90.in15a53c975151126f884347aaf6113ef01c2b5f121614287488000http://carson.math.uwm.edu/jenkins/user/jacobjacobjacob@anl.govRestore spval and fillvalue to 1.e36 Restore spval and fillvalue to 1.e36. Changing it produced unexpected diffs with baselines. Need to consider more carefully how spval is used. finidat also has it set to 1.e36 2021-02-25 15:11:28 -060015a53c975151126f884347aaf6113ef01c2b5f12Restore spval and fillvalue to 1.e36editcomponents/elm/src/main/elm_varcon.F90editcomponents/elm/src/main/ncdio_pio.F90.incomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmlcomponents/mpas-ocean/bld/build-namelist2230b536f0c29e20a2599ae2c2ec65ea6041cd451614296757000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govUpdate mpas-ocean bld scripts to match changes to Registry 2021-02-25 17:45:57 -06002230b536f0c29e20a2599ae2c2ec65ea6041cd45Update mpas-ocean bld scripts to match changes to Registryeditcomponents/mpas-ocean/bld/namelist_files/namelist_definition_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelisteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmleditcomponents/mpas-ocean/bld/build-namelist-sectioncomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlb38f9a93463c804d9668bc390c41ca9ac8469d8b1614356248000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govReorder check for bgc and spunup options to get the correct ICs 2021-02-26 10:17:28 -0600b38f9a93463c804d9668bc390c41ca9ac8469d8bReorder check for bgc and spunup options to get the correct ICseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnmlcomponents/mpas-sourcee72917912751dc3f2e5a1208e7dfe677580b3e491614358532000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Fixes missing edgeSignOnCell in redi_term2 2021-02-26 08:55:32 -0800e72917912751dc3f2e5a1208e7dfe677580b3e49update mpas-source: Fixes missing edgeSignOnCell in redi_term2editcomponents/mpas-source.circleci/config.yml95b24388aa8e34ea5e0855198bd06dc283d7d1681614365839000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduRun CircleCI on all branches 2021-02-26 12:57:19 -060095b24388aa8e34ea5e0855198bd06dc283d7d168Run CircleCI on all branchesedit.circleci/config.ymlcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-seaice/cime_config/buildnmlaf3e7203c9f2df48cce4948d0421b95f80dd5a7f1614368971000http://carson.math.uwm.edu/jenkins/user/luke.vanroekelluke.vanroekelluke.vanroekel@gmail.comUpdates WC14 and EC30to60 initial conditions 2021-02-26 13:49:31 -0600af3e7203c9f2df48cce4948d0421b95f80dd5a7fUpdates WC14 and EC30to60 initial conditionseditcomponents/mpas-ocean/cime_config/buildnmleditcomponents/mpas-seaice/cime_config/buildnml.circleci/run.sha4b7529e43e77ab07bb6801a3a754b3a538647d01614369971000http://carson.math.uwm.edu/jenkins/user/lukaszlukaszlukasz@uchicago.eduGet verbose output from case.build in CircleCI test 2021-02-26 14:06:11 -0600a4b7529e43e77ab07bb6801a3a754b3a538647d0Get verbose output from case.build in CircleCI testedit.circleci/run.shcomponents/eam/cime_config/config_compsets.xml64846f917385548045e9a3a2b4d66af279c432ad1614460909000http://carson.math.uwm.edu/jenkins/user/wlinwlinwlin@bnl.govCorrected the name for compset alias F-EAM-RCEMIP 2021-02-27 13:21:49 -080064846f917385548045e9a3a2b4d66af279c432adCorrected the name for compset alias F-EAM-RCEMIPeditcomponents/eam/cime_config/config_compsets.xmlcomponents/mpas-source5b1f712c612fb90c97310afc479c5e1b176c21241614632001000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: framework update 2021-03-01 12:53:21 -08005b1f712c612fb90c97310afc479c5e1b176c2124update mpas-source: framework updateeditcomponents/mpas-sourcecime_config/allactive/config_pesall.xmlbda54e6088bb4abddc4550d26f91df7c17bc57331614632766000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govRemove redundant compy G-case layout, use previous layout for new grid 2021-03-01 13:06:06 -0800bda54e6088bb4abddc4550d26f91df7c17bc5733Remove redundant compy G-case layout, use previous layout for new grideditcime_config/allactive/config_pesall.xmlcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F9050b4464ed1dea32200ebe4b3653d4591dd13efb51614644849000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMore changes for running CLUBB-SILHS with P3 ... 2021-03-01 18:27:29 -060050b4464ed1dea32200ebe4b3653d4591dd13efb5More changes for running CLUBB-SILHS with P3 ...editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/mpas-source10e72e184c0fe1dfde494414cb38e9fd9ebf7b2e1614711594000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: stand-alone makefile addition 2021-03-02 10:59:54 -080010e72e184c0fe1dfde494414cb38e9fd9ebf7b2eupdate mpas-source: stand-alone makefile additioneditcomponents/mpas-sourcecomponents/mpas-source3d79e7a8f04ec3131448c17fc75bb689e46fb6751614793499000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: stand-alone ocean output to single precision 2021-03-03 09:44:59 -08003d79e7a8f04ec3131448c17fc75bb689e46fb675update mpas-source: stand-alone ocean output to single precisioneditcomponents/mpas-sourcecomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F90a26671283e4960a446e29ae06d0e163276ab3e5c1614803539000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduTrying to get CLUBB-SILHS-P3 to run 2021-03-03 14:32:19 -0600a26671283e4960a446e29ae06d0e163276ab3e5cTrying to get CLUBB-SILHS-P3 to runeditcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90components/mpas-source70aed30d291080e3fb398c07b44d2f16036847411614884813000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: Simplifies the shortwave fixer formulation 2021-03-04 11:06:53 -080070aed30d291080e3fb398c07b44d2f1603684741update mpas-source: Simplifies the shortwave fixer formulationeditcomponents/mpas-sourcecomponents/mpas-ocean/cime_config/buildnml038851efe1acedddd6fcbc3a38a6d912a5550f101614897889000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govAdd bottomLayerShortwaveTemperatureFlux to timeSeriesStatsMonthlyOutput stream 2021-03-04 16:44:49 -0600038851efe1acedddd6fcbc3a38a6d912a5550f10Add bottomLayerShortwaveTemperatureFlux to timeSeriesStatsMonthlyOutput streameditcomponents/mpas-ocean/cime_config/buildnmlcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml9c9625191d7fd828859340b9a05a8716e7241e281614900304000http://carson.math.uwm.edu/jenkins/user/jonbobjonbobjonbob@lanl.govEnable shortwave_energy_fixer by default 2021-03-04 17:25:04 -06009c9625191d7fd828859340b9a05a8716e7241e28Enable shortwave_energy_fixer by defaulteditcomponents/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xmlcomponents/homme/src/share/namelist_mod.F90components/eam/bld/namelist_files/namelist_definition.xmlcomponents/homme/src/share/control_mod.F90components/homme/src/theta-l/share/prim_advance_mod.F90e87e8ccc4684ea431e1c2411eb1c2655c8ee43071614901636000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgmake vtheta_thresh a namelist variable 2021-03-04 16:47:16 -0700e87e8ccc4684ea431e1c2411eb1c2655c8ee4307make vtheta_thresh a namelist variableeditcomponents/homme/src/theta-l/share/prim_advance_mod.F90editcomponents/homme/src/share/namelist_mod.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/homme/src/share/control_mod.F90components/eam/bld/namelist_files/namelist_definition.xmlf247d9884324ec0c1e1bb84cb8096a5b0447c2a31614902093000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgtypo 2021-03-04 16:54:53 -0700f247d9884324ec0c1e1bb84cb8096a5b0447c2a3typoeditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcb411451162a6e13146c522935a5fccc518b2bdf1614902292000http://carson.math.uwm.edu/jenkins/user/mtmtmt@mp3dev.orgimprove comments 2021-03-04 16:58:12 -0700cb411451162a6e13146c522935a5fccc518b2bdfimprove commentseditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/mpas-sourcedef85d26b99e69f1f704f56a42bed86cb6d804eb1614962583000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: sediment transport design document 2021-03-05 08:43:03 -0800def85d26b99e69f1f704f56a42bed86cb6d804ebupdate mpas-source: sediment transport design documenteditcomponents/mpas-sourcecomponents/mpas-sourceddd8d221dd23bdaa83400291d9e09da408d659941615223275000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govupdate mpas-source: cleanup of ocean split-explicit driver 2021-03-08 09:07:55 -0800ddd8d221dd23bdaa83400291d9e09da408d65994update mpas-source: cleanup of ocean split-explicit drivereditcomponents/mpas-sourcecomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hpp60bff179fb4d5b594369ce79d71d47614357bb601615244646000http://carson.math.uwm.edu/jenkins/user/oksana.gubaoksana.gubaoksana.guba@gmail.comadjust constant 2021-03-08 17:04:06 -060060bff179fb4d5b594369ce79d71d47614357bb60adjust constanteditcomponents/homme/src/theta-l_kokkos/cxx/CaarFunctorImpl.hppexternals/scorpioc6eb93dff24dd8f66dfc465e1999046d488832331615258975000http://carson.math.uwm.edu/jenkins/user/jayeshjayeshjayesh@mcs.anl.govUpdating to Scorpio version 1.2.0 This release includes the following major changes, * Scorpio I/O performance statistics * Performance improvements for the BOX rearranger * Misc fixes for ADIOS 2021-03-08 21:02:55 -0600c6eb93dff24dd8f66dfc465e1999046d48883233Updating to Scorpio version 1.2.0editexternals/scorpiocomponents/mpas-source549d4ef098e55dc1d7b4fef61b46d225f725de421615310236000http://carson.math.uwm.edu/jenkins/user/mpetersenmpetersenmpetersen@lanl.govUpdate mpas-source: init mode case 2021-03-09 09:17:16 -0800549d4ef098e55dc1d7b4fef61b46d225f725de42Update mpas-source: init mode caseeditcomponents/mpas-sourcecomponents/eam/src/physics/cam/micro_p3_interface.F90ceb3498d84f4ee2353bc0506a7be827241727a211615932496000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have edited the P3 interface in an attempt to get everything working. 2021-03-16 17:08:16 -0500ceb3498d84f4ee2353bc0506a7be827241727a21I have edited the P3 interface in an attempt to get everything working.editcomponents/eam/src/physics/cam/micro_p3_interface.F90externals/scorpio0347dd041740fdb8627a872566fcec0556f055f61616097318000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the checkout of scorpio so we'd have a bug fix. 2021-03-18 14:55:18 -05000347dd041740fdb8627a872566fcec0556f055f6I updated the checkout of scorpio so we'd have a bug fix.editexternals/scorpiocomponents/eam/src/physics/cam/subcol_SILHS.F90ef92e8333e6a554b55a965026681e8f978365d291616780066000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWith these changes to some of the code in SILHS, CLUBB-SILHS-P3 finally runs to completion!! 2021-03-26 12:34:26 -0500ef92e8333e6a554b55a965026681e8f978365d29With these changes to some of the code in SILHS, CLUBB-SILHS-P3 finally runs to completion!!editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/physpkg.F90926ca5298713cfde1c8c56355af769646fbb03231616822993000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduEdited so that the code still works with MG microphysics. 2021-03-27 00:29:53 -0500926ca5298713cfde1c8c56355af769646fbb0323Edited so that the code still works with MG microphysics.editcomponents/eam/src/physics/cam/physpkg.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlc9b1c8a7a78e86ff56daab7be1e949ac136b0ceb1618608877000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI officially updated the code to read in version 4.1.1 of the P3 lookup tables. 2021-04-16 16:34:37 -0500c9b1c8a7a78e86ff56daab7be1e949ac136b0cebI officially updated the code to read in version 4.1.1 of the P3 lookup tables.editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmlcomponents/eam/src/physics/cam/subcol_SILHS.F90a0f12d7dbfda2686db78405cd92b0a51d8f7ce041618869490000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed the memory bug. 2021-04-19 16:58:10 -0500a0f12d7dbfda2686db78405cd92b0a51d8f7ce04Fixed the memory bug.editcomponents/eam/src/physics/cam/subcol_SILHS.F90.gitmodulescomponents/eam/src/physics/cam/clubb_intr.F90run_silhs_anvil_gust.cshexternals/scorpio_classiccomponents/homme/src/share/control_mod.F90components/elm/bld/namelist_files/namelist_defaults_clm4_5.xmlcimecomponents/eam/src/physics/cam/micro_mg2_0.F90components/eam/src/physics/cam/micro_p3.F90components/eam/bld/namelist_files/namelist_defaults_cam.xmlexternals/scorpiocime_config/config_grids.xmlrun_silhs_anvil_gust_wP3.cshtau_clean_anvil.csh7a689e5f2434269994cc10014026321f22a327621620093385000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnWe made some code changes to get these runs in Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 1) shut off the detrainment scheme in clubb_intr.F90, 2) reduce v_qit=v_nit by 2 in micro_p3.F90 2021-05-03 20:56:25 -05007a689e5f2434269994cc10014026321f22a32762We made some code changes to get these runs in Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 1) shut off the detrainment scheme in clubb_intr.F90, 2) reduce v_qit=v_nit by 2 in micro_p3.F90editexternals/scorpioedit.gitmoduleseditrun_silhs_anvil_gust.csheditcomponents/eam/src/physics/cam/micro_mg2_0.F90editexternals/scorpio_classiceditrun_silhs_anvil_gust_wP3.cshedittau_clean_anvil.csheditcomponents/homme/src/share/control_mod.F90editcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/elm/bld/namelist_files/namelist_defaults_clm4_5.xmleditcomponents/eam/src/physics/cam/clubb_intr.F90editcimeeditcomponents/eam/bld/namelist_files/namelist_defaults_cam.xmleditcime_config/config_grids.xmlNGD_wP3.csh2dd021dec02bae3be06684370c232522d99e86fc1620093892000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnNGD_wP3.csh is the new script for Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 2021-05-03 21:04:52 -05002dd021dec02bae3be06684370c232522d99e86fcNGD_wP3.csh is the new script for Issue 36, https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272.addNGD_wP3.cshNGD_wP3.csh606ff8db2fcdbb5c723f977e903fd10ba8c8d5f21620094089000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnC_invrs_tau_N2_wpxp_thresh = 2.3 for run D in Issue 36,https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272. 2021-05-03 21:08:09 -0500606ff8db2fcdbb5c723f977e903fd10ba8c8d5f2C_invrs_tau_N2_wpxp_thresh = 2.3 for run D in Issue 36,https://github.com/larson-group/e3sm/issues/36#issuecomment-831637272.editNGD_wP3.cshcimecomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3_interface.F90f7ef7dbda657dca04e50ab0e05d11db03967b2691620343908000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of uninitialized memory when P3 is used. 2021-05-06 18:31:48 -0500f7ef7dbda657dca04e50ab0e05d11db03967b269Getting rid of uninitialized memory when P3 is used.editcomponents/eam/src/physics/cam/subcol_SILHS.F90deletecimeeditcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/subcol_SILHS.F90607a98dd78f67d169777076a589d993be01480d71620346255000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdditional correction to go along with the previous commit. 2021-05-06 19:10:55 -0500607a98dd78f67d169777076a589d993be01480d7Additional correction to go along with the previous commit.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/micro_p3.F90f4bc960c6ff8851652d4126ebc540c462a3160ff1620550566000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 We set Vqit=Vqit*0.4, Vnit=Vnit*0.4. Result can be found in run [E](https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.zguo/P3_0504_ANN/2D.htm). 2021-05-09 16:56:06 +0800f4bc960c6ff8851652d4126ebc540c462a3160ffUpdate micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3.F90b416fc2584c383b8920c75fe26f4931079dce7881620691598000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am officially committing the official fix to the memory bug that has plagued us for a month (and actually, it's been around since we merged in P3 microphysics). 2021-05-10 19:06:38 -0500b416fc2584c383b8920c75fe26f4931079dce788I am officially committing the official fix to the memory bug thateditcomponents/eam/src/physics/cam/micro_p3.F90.gitmodules9a8cb006b14d7db443f1c456e12e7b2b77c349fa1620794357000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe path to cime in .gitmodules was not correct. 2021-05-11 23:39:17 -05009a8cb006b14d7db443f1c456e12e7b2b77c349faThe path to cime in .gitmodules was not correct.edit.gitmodulescomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/check_energy.F90components/eam/src/physics/cam/subcol_SILHS.F90d502ec5f4c304bb550c380f01359465b8a3185521620849572000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMopping up after the recent merge of the master. This version of the code actually runs now ... 2021-05-12 14:59:32 -0500d502ec5f4c304bb550c380f01359465b8a318552Mopping up after the recent merge of the master. This version of the code actually runs now ...editcomponents/eam/src/physics/cam/check_energy.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlcomponents/eam/bld/namelist_files/use_cases/2010_P3_control.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/elm/cime_config/config_component.xmlcomponents/elm/bld/namelist_files/use_cases/2010_P3_control.xmlcomponents/eam/bld/build-namelist7c28cc33648c4319eb3529e004a038bcacee040d1620850591000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding F2010SC5-P3 compset 2021-05-12 15:16:31 -05007c28cc33648c4319eb3529e004a038bcacee040dAdding F2010SC5-P3 compsetaddcomponents/elm/bld/namelist_files/use_cases/2010_P3_control.xmleditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmleditcomponents/eam/cime_config/config_compsets.xmladdcomponents/eam/bld/namelist_files/use_cases/2010_P3_control.xmleditcomponents/eam/bld/build-namelisteditcomponents/eam/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmladdcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xml297ace756f54bcad178c9ef8955a6e49f0ad9c121620850703000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd CO2 mixing ratio to be consistent with CMIP6 compset 2021-05-12 15:18:23 -0500297ace756f54bcad178c9ef8955a6e49f0ad9c12Add CO2 mixing ratio to be consistent with CMIP6 compseteditcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmlrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csheb7f15d93fdc4a7c9bffe8fd3ab614e39d266cfb1620852204000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd run script for Compy; ne120 cld_macmic_num_steps = 6 2021-05-12 15:43:24 -0500eb7f15d93fdc4a7c9bffe8fd3ab614e39d266cfbAdd run script for Compy; ne120 cld_macmic_num_steps = 6editcomponents/eam/bld/namelist_files/use_cases/2010S_cam5_P3.xmladdrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshaddrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshbc36d2e7ba839dd6b42a5b23b7756bde6fad9e711620852324000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduComment-out the explicit physical setting that are applied through the compset 2021-05-12 15:45:24 -0500bc36d2e7ba839dd6b42a5b23b7756bde6fad9e71Comment-out the explicit physical setting that are applied through the compseteditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne30_compy.csheditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.cshREPLAY/run_e3sm_anvil_gust.cshrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csh05d54c1e4ffbe46f7f6c6fc7ec093f9784e8c8dc1620852508000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd/remove IC for run script 2021-05-12 15:48:28 -050005d54c1e4ffbe46f7f6c6fc7ec093f9784e8c8dcAdd/remove IC for run scripteditrun_F2010SC5-CMIP6_E3SMv2_wP3v4_ne120_compy.csheditREPLAY/run_e3sm_anvil_gust.cshREPLAY/run_e3sm_anvil_gust.csh252bd0a3f0419762251ab61d6528301f0ec1ded11620852647000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving gibberish added during the most recent cherry-pick merge. 2021-05-12 15:50:47 -0500252bd0a3f0419762251ab61d6528301f0ec1ded1Removing gibberish added during the most recent cherry-pick merge.editREPLAY/run_e3sm_anvil_gust.cshcomponents/eam/src/physics/cam/micro_p3.F9019a09e9f8919cd47f02ab7082d9dd9aa2da4288b1620893240000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding the KK-2000/Accretion tuning params 2021-05-13 03:07:20 -050019a09e9f8919cd47f02ab7082d9dd9aa2da4288bAdding the KK-2000/Accretion tuning paramseditcomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/nucleate_ice.F90components/eam/src/physics/cam/micro_p3_utils.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/micro_p3.F90components/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/build-namelist38113ba9ebdd07d48f4d15a5920901639888319b1620893342000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduP3 + Cooper; Adding new flag to control the usage of Cooper scheme, while disable the Meyers scheme in <nucleate_ice.F90> 2021-05-13 03:09:02 -050038113ba9ebdd07d48f4d15a5920901639888319bP3 + Cooper; Adding new flag to control the usage of Cooper scheme, while disable the Meyers scheme in <nucleate_ice.F90>editcomponents/eam/src/physics/cam/nucleate_ice.F90editcomponents/eam/bld/namelist_files/namelist_definition.xmleditcomponents/eam/src/physics/cam/micro_p3_utils.F90editcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlNGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_prod_run.csh8f939b692241d5f92f5723695f54d5ab74f8b3ef1621194714000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting new runscripts 2021-05-16 14:51:54 -05008f939b692241d5f92f5723695f54d5ab74f8b3efCommitting new runscriptsaddNGD_wP3_1deg_full_stats.cshaddNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run.csha87cb67fae315c98e394f460843ed6c163deb4b81621194953000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the setting of CLUBB stats output variables from the runscript since they aren't necessary here. 2021-05-16 14:55:53 -0500a87cb67fae315c98e394f460843ed6c163deb4b8Removing the setting of CLUBB stats output variables from the runscripteditNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run.csh269c356720246506645414494dc5b9983fc8c1cb1621195692000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated run script 2021-05-16 15:08:12 -0500269c356720246506645414494dc5b9983fc8c1cbUpdated run scripteditNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_prod_run.cshaa1046ffdc9bbd8886b3b5cba7a2cda17d9934a71621900319000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing some small changes to my 1 degree run scripts. 2021-05-24 18:51:59 -0500aa1046ffdc9bbd8886b3b5cba7a2cda17d9934a7I am committing some small changes to my 1 degree run scripts.editNGD_wP3_1deg_full_stats.csheditNGD_wP3_1deg_prod_run.cshremap/make_climo.pyremap/remap_ne30.cshremap/function_cal_mean.pyff3e9643384a9a97a1e647503f656a0f59e4bad11621901297000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added "seasonally continuous" and "seasonally discontinuous" functionality to the post-processing scripts. 2021-05-24 19:08:17 -0500ff3e9643384a9a97a1e647503f656a0f59e4bad1I added "seasonally continuous" and "seasonally discontinuous" functionalityeditremap/remap_ne30.csheditremap/make_climo.pyeditremap/function_cal_mean.pyNGD_wP3_0p25deg_prod_run.cshcd340a09d68a5cf38eae29b1a484e786eabd995b1621958967000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding the run script for quarter degree production runs. 2021-05-25 11:09:27 -0500cd340a09d68a5cf38eae29b1a484e786eabd995bI am adding the run script for quarter degree production runs.addNGD_wP3_0p25deg_prod_run.cshcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/turbulent_adv_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/stats_zm_module.F90components/eam/src/physics/clubb/sigma_sqd_w_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/clubb/saturation.F90components/eam/src/physics/clubb/stats_clubb_utilities.F90components/eam/src/physics/clubb/calc_pressure.F90components/eam/src/physics/silhs/math_utilities.F90components/eam/src/physics/clubb/clip_explicit.F90components/eam/src/physics/clubb/diagnose_correlations_module.F90components/eam/src/physics/clubb/calendar.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/surface_varnce_module.F90components/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/fill_holes.F90components/eam/src/physics/clubb/precipitation_fraction.F90components/eam/src/physics/silhs/silhs_importance_sample_module.F90components/eam/src/physics/clubb/sfc_varnce_module.F90components/eam/src/physics/silhs/est_kessler_microphys_module.F90components/eam/src/physics/clubb/lapack_wrap.F90components/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/file_functions.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/output_netcdf.F90components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90components/eam/src/physics/clubb/stats_type_utilities.F90components/eam/src/physics/clubb/new_pdf.F90components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/pdf_utilities.F90components/eam/src/physics/clubb/stats_variables.F90components/eam/src/physics/clubb/input_reader.F90components/eam/src/physics/clubb/output_grads.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/corr_varnce_module.F90components/eam/src/physics/clubb/sponge_layer_damping.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/new_hybrid_pdf_main.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/clubb/numerical_check.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/pos_definite_module.F90components/eam/src/physics/silhs/transform_to_pdf_module.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/interpolation.F90components/eam/src/physics/clubb/matrix_operations.F909dd78e7a7af311288eded135e21a7c5fbeb8e1f51622235032000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB and SILHS to version b0feee8 from May 27, 2021. 2021-05-28 15:50:32 -05009dd78e7a7af311288eded135e21a7c5fbeb8e1f5I updated the version of CLUBB and SILHS to version b0feee8 from May 27, 2021.editcomponents/eam/src/physics/clubb/output_grads.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/clubb/saturation.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/silhs/math_utilities.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/input_reader.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/clip_explicit.F90editcomponents/eam/src/physics/clubb/matrix_operations.F90editcomponents/eam/src/physics/clubb/pdf_utilities.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90editcomponents/eam/src/physics/clubb/stats_zm_module.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90deletecomponents/eam/src/physics/clubb/surface_varnce_module.F90editcomponents/eam/src/physics/clubb/calendar.F90editcomponents/eam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/stats_clubb_utilities.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/lapack_wrap.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/stats_type_utilities.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/pos_definite_module.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/eam/src/physics/clubb/output_netcdf.F90addcomponents/eam/src/physics/clubb/sfc_varnce_module.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/clubb/calc_pressure.F90editcomponents/eam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/eam/src/physics/clubb/file_functions.F90editcomponents/eam/src/physics/clubb/interpolation.F90editcomponents/eam/src/physics/silhs/silhs_importance_sample_module.F90editcomponents/eam/src/physics/clubb/sponge_layer_damping.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/silhs/est_kessler_microphys_module.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/clubb/corr_varnce_module.F90editcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/new_pdf.F90editcomponents/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90editcomponents/eam/src/physics/silhs/transform_to_pdf_module.F90editcomponents/eam/src/physics/silhs/lh_microphys_var_covar_module.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/numerical_check.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/sigma_sqd_w_module.F90editcomponents/eam/src/physics/clubb/precipitation_fraction.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90editcomponents/eam/src/physics/silhs/output_2D_samples_module.F90editcomponents/eam/src/physics/clubb/fill_holes.F90components/eam/src/physics/cam/subcol_SILHS.F908006e05af6e10c46186357043f362722854c10e31622276191000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA by-hand redo of commit 814dc04 to the clubb_silhs_devel branch on Feb 4, 2021. 2021-05-29 03:16:31 -05008006e05af6e10c46186357043f362722854c10e3A by-hand redo of commit 814dc04 to the clubb_silhs_devel branch on Feb 4, 2021.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90bb485f794c31e3a94f59f11d2dd51bf90824083e1622575146000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a hand-merge of commit 9b7b8b6 to the clubb_silhs_devel branch on March 15, 2021. 2021-06-01 14:19:06 -0500bb485f794c31e3a94f59f11d2dd51bf90824083eThis is a hand-merge of commit 9b7b8b6 to the clubb_silhs_devel branch on March 15, 2021.editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F909ae57fd27d599a1ca1fcc4e3e011c9975d7d01bf1622578621000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a hand re-do of commit e708e6e to the clubb_silhs_devel branch on March 15, 2021. 2021-06-01 15:17:01 -05009ae57fd27d599a1ca1fcc4e3e011c9975d7d01bfThis is a hand re-do of commit e708e6e to the clubb_silhs_devel brancheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90273ec1f9795db690ffb6e658d39cb5f98b49b7301622582081000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand redo of commit 2f1647c to the clubb_silhs_devel branch that was originally made on April 8, 2021. 2021-06-01 16:14:41 -0500273ec1f9795db690ffb6e658d39cb5f98b49b730This is a by-hand redo of commit 2f1647c to the clubb_silhs_devel brancheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F9054d8d523805ec14d0df4ae6969d47756502b79f71622582653000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduA by-hand redo of commit b4fd9aa to the clubb_silhs_devel branch from April 22, 2021. 2021-06-01 16:24:13 -050054d8d523805ec14d0df4ae6969d47756502b79f7A by-hand redo of commit b4fd9aa to the clubb_silhs_devel branch fromeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90e80f9ac2a82b19b80adc3e43de277a84869b6c761622585084000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand cherry-pick of commit 0af8b9a (to the clubb_silhs_devel branch) on April 22, 2021. 2021-06-01 17:04:44 -0500e80f9ac2a82b19b80adc3e43de277a84869b6c76This is a by-hand cherry-pick of commit 0af8b9a (to the clubb_silhs_develeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90ef9f52b81079e6e4768127e70268f8bdf9c93e171622586824000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit f3d5061 that was made to the clubb_silhs_devel branch on April 23, 2021. 2021-06-01 17:33:44 -0500ef9f52b81079e6e4768127e70268f8bdf9c93e17I am committing a by-hand cherry-pick of commit f3d5061 that was made to theeditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F900c96b5b7eb3c3a419786f6192bdbb083398daa1a1622754530000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of revision 1f63abb from April 29, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 16:08:50 -05000c96b5b7eb3c3a419786f6192bdbb083398daa1aI am committing a by-hand cherry-pick of revision 1f63abb from April 29, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F905182ef3e218491981d193e9be690275fce77614c1622755200000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis is a by-hand cherry-pick of commit 853a408 from May 4, 2021, which was made to the clubb_silhs_devel branch. 2021-06-03 16:20:00 -05005182ef3e218491981d193e9be690275fce77614cThis is a by-hand cherry-pick of commit 853a408 from May 4, 2021, whicheditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F905ff3c1ebf66d0d665564315c500fbb005841cfaa1622756178000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 85ff2e6 from May 4, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 16:36:18 -05005ff3c1ebf66d0d665564315c500fbb005841cfaaI am committing a by-hand cherry-pick of commit 85ff2e6 from May 4, 2021,editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/clubb_intr.F90897ccc9b3a79dc4438622492892520a92d92f4301622756834000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 33d4507 from May 4, 2021, which was orignally made to the clubb_silhs_devel branch. 2021-06-03 16:47:14 -0500897ccc9b3a79dc4438622492892520a92d92f430I am committing a by-hand cherry-pick of commit 33d4507 from May 4, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F901c0cd0634dd4c4529af50f911100ae4cd0d206741622757131000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit 3482c3a from March 7, 2021, which was made to the clubb_silhs_devel branch. 2021-06-03 16:52:11 -05001c0cd0634dd4c4529af50f911100ae4cd0d20674I am committing a by-hand cherry-pick of commit 3482c3a from March 7, 2021,editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90a68826416a9ca272f28523411eb860b116f4a96b1622757367000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis by-hand cherry-pick is actually 2 cherry-picks for the price of 1!!! Both commit 6967709 from February 27, 2021 and commit 021e06b5 from January 26, 2021 are included in this commit. Both of these commits were originally made to the clubb_silhs_devel branch. 2021-06-03 16:56:07 -0500a68826416a9ca272f28523411eb860b116f4a96bThis by-hand cherry-pick is actually 2 cherry-picks for the price of 1!!!editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/bld/namelist_files/namelist_definition.xml3d21e23d77ec3a740403d15729375135691183571622759074000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a by-hand cherry-pick of commit ad5378e from May 12, 2021, which was originally made to the clubb_silhs_devel branch. 2021-06-03 17:24:34 -05003d21e23d77ec3a740403d1572937513569118357I am committing a by-hand cherry-pick of commit ad5378e from May 12, 2021, whicheditcomponents/eam/bld/namelist_files/namelist_definition.xmlcomponents/eam/bld/namelist_files/namelist_definition.xml1bb9544be93dc8877396de84d4f3b9e50d6e31dc1622759417000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging clubb_up2_vp2_factor to clubb_up2_sfc_coef to correspond with recent CLUBB code changes. 2021-06-03 17:30:17 -05001bb9544be93dc8877396de84d4f3b9e50d6e31dcChanging clubb_up2_vp2_factor to clubb_up2_sfc_coef to correspond witheditcomponents/eam/bld/namelist_files/namelist_definition.xmlNGD_wP3.cshNGD_wP3_1deg_full_stats.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_1deg_prod_run.cshrun_silhs_anvil_gust.cshrun_silhs_anvil_gust_wP3.cshd85ef240b60462705e851a4b85a34d7fe2d47c301622760791000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am changing some of the run scripts to reflect a recent name change in CLUBB. 2021-06-03 17:53:11 -0500d85ef240b60462705e851a4b85a34d7fe2d47c30I am changing some of the run scripts to reflect a recent name change in CLUBB.editNGD_wP3_0p25deg_prod_run.csheditrun_silhs_anvil_gust.csheditrun_silhs_anvil_gust_wP3.csheditNGD_wP3_1deg_prod_run.csheditNGD_wP3.csheditNGD_wP3_1deg_full_stats.cshNGD_wP3_1deg_full_stats.cshNGD_wP3.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_1deg_prod_run.cshrun_silhs_anvil_gust.cshrun_silhs_anvil_gust_wP3.csh13db57d1e03643c77386e23622d4ca8a83ab47da1622761426000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating runscripts based on a recent name change in CLUBB, where clubb_up2_vp2_factor was changed to clubb_up2_sfc_coef. 2021-06-03 18:03:46 -050013db57d1e03643c77386e23622d4ca8a83ab47daI am updating runscripts based on a recent name change in CLUBB, whereeditNGD_wP3_1deg_full_stats.csheditNGD_wP3_0p25deg_prod_run.csheditrun_silhs_anvil_gust.csheditNGD_wP3.csheditrun_silhs_anvil_gust_wP3.csheditNGD_wP3_1deg_prod_run.cshcomponents/eam/src/physics/cam/subcol_SILHS.F901219bb5b4846ae9d74481329150e1443127bd6fd1622763450000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed some whoopsies 2021-06-03 18:37:30 -05001219bb5b4846ae9d74481329150e1443127bd6fdFixed some whoopsieseditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90f9f518303282be72067c2a5eea625e3ed270410f1624403415000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing the bug that reorded the column/subcolumn indices in state_sc. This commit puts them back the way they were so that the code can function again. 2021-06-22 18:10:15 -0500f9f518303282be72067c2a5eea625e3ed270410fI am fixing the bug that reorded the column/subcolumn indices in state_sc. Thiseditcomponents/eam/src/physics/cam/subcol_SILHS.F90components/elm/src/biogeophys/BalanceCheckMod.F9069249e6b8405f2b912fd827af2afdf64c08a01091624945953000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the tolerance on the snow balance error check in the land module so that SILHS could run to completion with the PG2 grid. 2021-06-29 00:52:33 -050069249e6b8405f2b912fd827af2afdf64c08a0109I changed the tolerance on the snow balance error check in the land moduleeditcomponents/elm/src/biogeophys/BalanceCheckMod.F90cime_config/machines/config_machines.xmle38dc8094ba64301abbda46cd2f1b6eb83b894801625115319000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd module load per5-extras for cori machines 2021-06-30 23:55:19 -0500e38dc8094ba64301abbda46cd2f1b6eb83b89480Add module load per5-extras for cori machineseditcime_config/machines/config_machines.xmlcomponents/eam/cime_config/config_compsets.xmlcomponents/eam/cime_config/config_component.xmlcomponents/eam/src/physics/cam/micro_p3_utils.F90components/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/cam/micro_p3_interface.F90components/eam/bld/namelist_files/namelist_defaults_eam.xmlcomponents/elm/cime_config/config_component.xmlcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6_piAEROSOL.xmlcomponents/eam/bld/build-namelist5bc0d9c61f24819c586d7e06d642e756d90600121625188001000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduP3 update and new compsets for AMIP simulations P3 updates include new lookup table and bug fixes. Additional output fields are made available for offline arm radar simulator. New AMIP compsets are F20TR-P3 for transient AMIP simulations, and companion F20TR-P3-piAEROSOL for estimation of aerosol effective radiative forcing. EAM's build-namelist is also updated to support P3 compsets with compatibility for MG2 microphysics. [non-BFB] for all configuration using P3 microphysics. Conflicts: components/eam/bld/namelist_files/namelist_defaults_eam.xml components/eam/src/physics/cam/micro_p3.F90 components/eam/src/physics/cam/micro_p3_interface.F90 All the conflicts have been resolved. 2021-07-01 20:06:41 -05005bc0d9c61f24819c586d7e06d642e756d9060012P3 update and new compsets for AMIP simulationseditcomponents/eam/cime_config/config_compsets.xmleditcomponents/eam/src/physics/cam/micro_p3_utils.F90addcomponents/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6_piAEROSOL.xmleditcomponents/eam/src/physics/cam/micro_p3.F90editcomponents/eam/cime_config/config_component.xmleditcomponents/elm/cime_config/config_component.xmleditcomponents/eam/src/physics/cam/micro_p3_interface.F90editcomponents/eam/bld/build-namelisteditcomponents/eam/bld/namelist_files/namelist_defaults_eam.xmlrun.F20TR-P3.template.sh42754f9c30c94d47b51c95ec6197c158ca7537571625188068000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd simplied v2 run script template run.F20TR-P3.template.sh 2021-07-01 20:07:48 -050042754f9c30c94d47b51c95ec6197c158ca753757Add simplied v2 run script template run.F20TR-P3.template.shaddrun.F20TR-P3.template.shrun.F20TR-P3.template.shf536041f23dce9c0535b8e9dcce8476e6ba2a99c1625188089000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange pe-layout to 64x2 on 338 nodes for ne120 on cori-knl 2021-07-01 20:08:09 -0500f536041f23dce9c0535b8e9dcce8476e6ba2a99cChange pe-layout to 64x2 on 338 nodes for ne120 on cori-knleditrun.F20TR-P3.template.shcomponents/eam/src/physics/cam/micro_p3_interface.F90ccb5a0e4bb3af662766b44a8dfdf7f7843e3ca2b1625208425000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a typo and commented out a line to get the code to compile and run! 2021-07-02 01:47:05 -0500ccb5a0e4bb3af662766b44a8dfdf7f7843e3ca2bFixed a typo and commented out a line to get the code to compile and run!editcomponents/eam/src/physics/cam/micro_p3_interface.F90NGD_wP3_0p25deg_prod_run.csh7490621f2f921ed003b3112428b30862b1764fd31626376097000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated to use the correct finidat and fsurdat for a 0.25 degree production run. 2021-07-15 14:08:17 -05007490621f2f921ed003b3112428b30862b1764fd3Updated to use the correct finidat and fsurdat for a 0.25 degree production run.editNGD_wP3_0p25deg_prod_run.cshNGD_wP3.cshNGD_wP3_1deg_prod_run.cshcomponents/mpas-sourcecomponents/eam/src/physics/cam/micro_p3.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F9066665b3434d1a02aa4923bda39653fb28e4fdff71626615519000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnThis run repeat the [simulation](https://github.com/larson-group/e3sm/issues/36#issuecomment-881690516). Parameters setting is suggested by the tunner. 2021-07-18 08:38:39 -050066665b3434d1a02aa4923bda39653fb28e4fdff7This run repeat the [simulation](https://github.com/larson-group/e3sm/issues/36#issuecomment-881690516). Parameters setting is suggested by the tunner.editcomponents/eam/src/physics/cam/micro_p3.F90editNGD_wP3.csheditcomponents/mpas-sourceeditNGD_wP3_1deg_prod_run.csheditcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90cime_config/machines/config_compilers.xmlNGD_wP3_1deg_prod_run.cshcime_config/machines/config_machines.xmlbb22f888e7867ce72231988ee9cb18a6b781e6d91627096158000http://carson.math.uwm.edu/jenkins/user/guozhunguozhunguozhun@lasg.iap.ac.cnUpdate the Machine files for Anvil. Issue #36. 2021-07-23 22:09:18 -0500bb22f888e7867ce72231988ee9cb18a6b781e6d9Update the Machine files for Anvil. Issue #36.editNGD_wP3_1deg_prod_run.csheditcime_config/machines/config_machines.xmleditcime_config/machines/config_compilers.xmlNGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3_0p25deg_prod_run.cshNGD_wP3_0p25deg_prod_run_anvil.cshc5d85b35a01185881c4bd144fdd8083dd35bacbd1627426536000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMake two different production run files for the 0.25 degree simulations: one for Anvil and one for Cori. 2021-07-27 15:55:36 -0700c5d85b35a01185881c4bd144fdd8083dd35bacbdMake two different production run files for the 0.25 degree simulations:addNGD_wP3_0p25deg_prod_run_cori.cshdeleteNGD_wP3_0p25deg_prod_run.cshaddNGD_wP3_0p25deg_prod_run_anvil.cshNGD_wP3_1deg_prod_run.csh8539ebbd497eef90374a010d283dbf6cf4e3be531627974921000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run.csh configuration 0706 with vqit=0.45 to branch b0feee8, https://github.com/larson-group/e3sm/issues/36#issuecomment-891440909 2021-08-03 15:15:21 +08008539ebbd497eef90374a010d283dbf6cf4e3be53Update NGD_wP3_1deg_prod_run.csheditNGD_wP3_1deg_prod_run.cshcomponents/eam/src/physics/cam/micro_p3.F908b25546a4c1a8ebf91e82d9bdd04bec973555f331627975132000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 Configuration 0706 with vqit=0.45 to branch b0feee8. 2021-08-03 15:18:52 +08008b25546a4c1a8ebf91e82d9bdd04bec973555f33Update micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90NGD_wP3.cshNGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3_1deg_prod_run.cshNGD_wP3_0p25deg_prod_run_anvil.csh062a511f3e2650a7a73e374d1c509b465c48fc621628022999000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduReadying scripts for production runs using the final tuning. 2021-08-03 15:36:39 -0500062a511f3e2650a7a73e374d1c509b465c48fc62Readying scripts for production runs using the final tuning.editNGD_wP3.csheditNGD_wP3_0p25deg_prod_run_anvil.csheditNGD_wP3_0p25deg_prod_run_cori.csheditNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run.cshb545439ec48ac6ed3a6078ebc76cc7e8df0fabc51628023071000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRenaming the 1 degree production run script to specify use on Anvil. 2021-08-03 15:37:51 -0500b545439ec48ac6ed3a6078ebc76cc7e8df0fabc5Renaming the 1 degree production run script to specify use on Anvil.deleteNGD_wP3_1deg_prod_run.cshNGD_wP3_1deg_prod_run_anvil.cshd1980afc6629005fd70f508c7a97694faa792c0f1628023338000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNew file name 2021-08-03 15:42:18 -0500d1980afc6629005fd70f508c7a97694faa792c0fNew file nameaddNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.cshe8b7f3de56d10f9d21ab0484dd43537405478e1f1628027608000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated for new AMIP run script, plus updated stats on 1 deg run script. 2021-08-03 16:53:28 -0500e8b7f3de56d10f9d21ab0484dd43537405478e1fUpdated for new AMIP run script, plus updated stats on 1 deg run script.addNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csh14ab96b3875baa6cebfb2b4b96569e08bff728231628029281000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving the offensive ZM variables out of the fincl5 list, allowing the simulations to run again. 2021-08-03 17:21:21 -050014ab96b3875baa6cebfb2b4b96569e08bff72823Removing the offensive ZM variables out of the fincl5 list, allowingeditNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh31bd75b9006640d0e4bee742605432d149081e4e1628030144000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a special runscript for AMIP sstplus4K 2021-08-03 17:35:44 -050031bd75b9006640d0e4bee742605432d149081e4eAdded a special runscript for AMIP sstplus4KaddNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh2e433a96af52d5b78b20bbe07eb5b99a3b0729bd1628032413000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChange the dang name! 2021-08-03 18:13:33 -05002e433a96af52d5b78b20bbe07eb5b99a3b0729bdChange the dang name!editNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csh56fcae343a7cde5c8189f73faba2e82f90891b041628057462000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run_anvil.csh 2021-08-04 14:11:02 +080056fcae343a7cde5c8189f73faba2e82f90891b04Update NGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_0p25deg_prod_run_cori.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_0p25deg_prod_run_anvil.csheae9e89d98b522b3a509e13a3ed6a047568475f31628060750000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging clubb_rainevap_turb to false. 2021-08-04 02:05:50 -0500eae9e89d98b522b3a509e13a3ed6a047568475f3Changing clubb_rainevap_turb to false.editNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csheditNGD_wP3_0p25deg_prod_run_anvil.csheditNGD_wP3_0p25deg_prod_run_cori.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.cshf09e7859670151103e837fdf1bab2ffb05a398791628111796000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRemoving finidat (initial condition files) for the AMIP runs, following Chris Terai's e-mail. 2021-08-04 16:16:36 -0500f09e7859670151103e837fdf1bab2ffb05a39879Removing finidat (initial condition files) for the AMIP runs, followingeditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_F2010-CTL_prod_run_anvil.csha9b3c135bafaac9a4bf1998a9d567e7fd36b18c91628115729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding the runscript for the 25 month control run for aerosol production. 2021-08-04 17:22:09 -0500a9b3c135bafaac9a4bf1998a9d567e7fd36b18c9Adding the runscript for the 25 month control run for aerosol production.addNGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csh23dc5f8e8f15027b3a5f87d0db4abdea0ae04a561628119132000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded the script for the active end of the Aerosol-Cloud Interaction Simulation. 2021-08-04 18:18:52 -050023dc5f8e8f15027b3a5f87d0db4abdea0ae04a56Added the script for the active end of the Aerosol-Cloud InteractionaddNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshremap/remap_ne30pg2.csh696eb5674bf5867d1201671a71b0724cb61eb3291628197221000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding Zhun's remap_ne30pg2.csh script to the remap directory. 2021-08-05 16:00:21 -0500696eb5674bf5867d1201671a71b0724cb61eb329I am adding Zhun's remap_ne30pg2.csh script to the remap directory.addremap/remap_ne30pg2.cshremap/make_climo.pyremap/remap_ne30pg2.csh0afe5e6ae16506c6fddca4a9b4691b1481734c441628197707000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed an error 2021-08-05 16:08:27 -05000afe5e6ae16506c6fddca4a9b4691b1481734c44Fixed an erroreditremap/make_climo.pyeditremap/remap_ne30pg2.cshNGD_wP3_1deg_prod_sens.csh1a50240252d682f474e62fb5b3a6a28bda42c8611628493420000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd files via upload We create a new script that can prepare and run the default run and all sensitivity runs automatically. https://github.com/larson-group/e3sm/issues/36#issuecomment-891447115 2021-08-09 15:17:00 +08001a50240252d682f474e62fb5b3a6a28bda42c861Add files via uploadaddNGD_wP3_1deg_prod_sens.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshpostprocessing/run_e3sm_diags.pyNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.csh4818f926042bce92955859e2b0b3c58881da6eeb1628700554000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCommitting temporary changes 2021-08-11 11:49:14 -05004818f926042bce92955859e2b0b3c58881da6eebCommitting temporary changeseditNGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csheditpostprocessing/run_e3sm_diags.pyeditNGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshNGD_wP3_1deg_prod_run_anvil.csha58714d8627e73889b42f0f921d7f479ba2e99d51628700719000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_run_anvil.csh 2021-08-11 11:51:59 -0500a58714d8627e73889b42f0f921d7f479ba2e99d5Update NGD_wP3_1deg_prod_run_anvil.csheditNGD_wP3_1deg_prod_run_anvil.cshNGD_wP3_1deg_AMIP_prod_run_anvil.csh050556061d5b42f3e07afab2177958580e9b54311628700804000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_AMIP_prod_run_anvil.csh 2021-08-11 11:53:24 -0500050556061d5b42f3e07afab2177958580e9b5431Update NGD_wP3_1deg_AMIP_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_prod_run_anvil.cshNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshe2f12b7b200f656f69231dd7c889668f0740094d1628700923000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csh 2021-08-11 11:55:23 -0500e2f12b7b200f656f69231dd7c889668f0740094dUpdate NGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.csheditNGD_wP3_1deg_AMIP_sstplus4K_prod_run_anvil.cshcomponents/eam/src/physics/cam/micro_p3.F900a251c8c220734cc8065f29a643107d11ff6cbb71628701099000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate micro_p3.F90 2021-08-11 11:58:19 -05000a251c8c220734cc8065f29a643107d11ff6cbb7Update micro_p3.F90editcomponents/eam/src/physics/cam/micro_p3.F90NGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshda11cc052eace5e32dc802899425f6d6d9247cdd1628878073000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_F2010-CTL_prod_run_anvil.csh 2021-08-13 13:07:53 -0500da11cc052eace5e32dc802899425f6d6d9247cddUpdate NGD_wP3_1deg_F2010-CTL_prod_run_anvil.csheditNGD_wP3_1deg_F2010-CTL_prod_run_anvil.cshNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csha6a7f670f1a042d0f06eb26232cb79d2ce3729ed1628878141000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csh 2021-08-13 13:09:01 -0500a6a7f670f1a042d0f06eb26232cb79d2ce3729edUpdate NGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.csheditNGD_wP3_1deg_F2010-piAEROSOL_prod_run_anvil.cshNGD_wP3_1deg_prod_sens.csh446330d55d1bd891c15b3b1d5a3ef61b2bab27b91629008104000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate NGD_wP3_1deg_prod_sens.csh We make `micro_vqit` tunable. https://github.com/larson-group/e3sm/issues/36#issuecomment-899001464 2021-08-15 14:15:04 +0800446330d55d1bd891c15b3b1d5a3ef61b2bab27b9Update NGD_wP3_1deg_prod_sens.csheditNGD_wP3_1deg_prod_sens.cshcomponents/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/turbulent_adv_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/stats_zm_module.F90components/eam/src/physics/clubb/error_code.F90components/eam/src/physics/clubb/clip_semi_implicit.F90components/eam/src/physics/clubb/code_timer_module.F90components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90components/eam/src/physics/clubb/saturation.F90components/eam/src/physics/clubb/calc_pressure.F90components/eam/src/physics/clubb/stats_clubb_utilities.F90components/eam/src/physics/clubb/clip_explicit.F90components/eam/src/physics/clubb/new_tsdadg_pdf.F90components/eam/src/physics/clubb/diagnose_correlations_module.F90components/eam/src/physics/clubb/calendar.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/endian.F90components/eam/src/physics/clubb/parameters_model.F90components/eam/src/physics/silhs/output_2D_samples_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/fill_holes.F90components/eam/src/physics/clubb/precipitation_fraction.F90components/eam/src/physics/clubb/stats_sfc_module.F90components/eam/src/physics/clubb/stats_lh_zt_module.F90components/eam/src/physics/clubb/sfc_varnce_module.F90components/eam/src/physics/clubb/lapack_wrap.F90components/eam/src/physics/clubb/stats_zt_module.F90components/eam/src/physics/clubb/Skx_module.F90components/eam/src/physics/clubb/file_functions.F90components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/advance_xp3_module.F90components/eam/src/physics/clubb/output_netcdf.F90components/eam/src/physics/clubb/stats_type_utilities.F90components/eam/src/physics/clubb/new_pdf.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/LY93_pdf.F90components/eam/src/physics/clubb/stats_lh_sfc_module.F90components/eam/src/physics/clubb/stats_variables.F90components/eam/src/physics/clubb/input_reader.F90components/eam/src/physics/clubb/output_grads.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/corr_varnce_module.F90components/eam/src/physics/clubb/stats_rad_zm_module.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/sponge_layer_damping.F90components/eam/src/physics/clubb/mt95.f90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/new_hybrid_pdf_main.F90components/eam/src/physics/clubb/parameter_indices.F90components/eam/src/physics/clubb/stats_rad_zt_module.F90components/eam/src/physics/clubb/numerical_check.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/new_pdf_main.F90components/eam/src/physics/clubb/diffusion.F90components/eam/src/physics/silhs/latin_hypercube_driver_module.F90components/eam/src/physics/clubb/pos_definite_module.F90components/eam/src/physics/clubb/mean_adv.F90components/eam/src/physics/clubb/T_in_K_module.F90components/eam/src/physics/clubb/interpolation.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/matrix_operations.F9080245b69e443e81bfd0cc69c1836ddb07200d3b91637185344000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the version of CLUBB and SILHS used in E3SM to version 1c77ed3 from November 15, 2021. 2021-11-17 15:42:24 -060080245b69e443e81bfd0cc69c1836ddb07200d3b9I am updating the version of CLUBB and SILHS used in E3SM toeditcomponents/eam/src/physics/clubb/advance_xp3_module.F90editcomponents/eam/src/physics/clubb/new_tsdadg_pdf.F90editcomponents/eam/src/physics/clubb/stats_zm_module.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/clip_semi_implicit.F90editcomponents/eam/src/physics/clubb/pos_definite_module.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/T_in_K_module.F90editcomponents/eam/src/physics/clubb/new_pdf.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/stats_rad_zm_module.F90editcomponents/eam/src/physics/clubb/advance_xp2_xpyp_module.F90editcomponents/eam/src/physics/clubb/fill_holes.F90editcomponents/eam/src/physics/clubb/stats_sfc_module.F90editcomponents/eam/src/physics/clubb/precipitation_fraction.F90editcomponents/eam/src/physics/clubb/new_pdf_main.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/calendar.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/clubb/parameter_indices.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/clubb/corr_varnce_module.F90editcomponents/eam/src/physics/clubb/error_code.F90editcomponents/eam/src/physics/clubb/lapack_wrap.F90editcomponents/eam/src/physics/clubb/output_grads.F90editcomponents/eam/src/physics/clubb/file_functions.F90editcomponents/eam/src/physics/clubb/diffusion.F90editcomponents/eam/src/physics/clubb/stats_rad_zt_module.F90editcomponents/eam/src/physics/clubb/parameters_model.F90editcomponents/eam/src/physics/clubb/interpolation.F90editcomponents/eam/src/physics/clubb/code_timer_module.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/endian.F90editcomponents/eam/src/physics/clubb/LY93_pdf.F90editcomponents/eam/src/physics/clubb/stats_type_utilities.F90editcomponents/eam/src/physics/clubb/mt95.f90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/version_clubb_core.txteditcomponents/eam/src/physics/clubb/clip_explicit.F90editcomponents/eam/src/physics/clubb/numerical_check.F90editcomponents/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/clubb/mean_adv.F90editcomponents/eam/src/physics/clubb/sfc_varnce_module.F90editcomponents/eam/src/physics/clubb/stats_lh_sfc_module.F90editcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/sponge_layer_damping.F90editcomponents/eam/src/physics/clubb/input_reader.F90editcomponents/eam/src/physics/clubb/stats_zt_module.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/output_netcdf.F90editcomponents/eam/src/physics/clubb/calc_pressure.F90editcomponents/eam/src/physics/clubb/new_hybrid_pdf_main.F90editcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/silhs/latin_hypercube_driver_module.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/stats_lh_zt_module.F90editcomponents/eam/src/physics/clubb/turbulent_adv_pdf.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/clubb/Skx_module.F90editcomponents/eam/src/physics/clubb/matrix_operations.F90editcomponents/eam/src/physics/clubb/diagnose_correlations_module.F90editcomponents/eam/src/physics/clubb/saturation.F90editcomponents/eam/src/physics/silhs/output_2D_samples_module.F90editcomponents/eam/src/physics/clubb/stats_clubb_utilities.F90components/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F9073d84c48c9426bfa251fa9da34feb0f715bae47a1637187729000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduMade updates to both clubb_intr.F90 and subcol_SILHS.F90 in order to update the E3SM-CLUBB-SILHS code for version 1c77ed3 of CLUBB from November 15, 2021. 2021-11-17 16:22:09 -060073d84c48c9426bfa251fa9da34feb0f715bae47aMade updates to both clubb_intr.F90 and subcol_SILHS.F90 in ordereditcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90nightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_BOMEX.cshnightly_test/nightly_e3sm_scm_RICO.cshe74184ed52c3c9ca495b2d578e68c7b4f686f7b91637190181000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI altered the nightly test run scripts to be consistent with what's found in the current clubb_silhs_devel branch. 2021-11-17 17:03:01 -0600e74184ed52c3c9ca495b2d578e68c7b4f686f7b9I altered the nightly test run scripts to be consistent with what'seditnightly_test/nightly_e3sm_scm_BOMEX.csheditnightly_test/nightly_e3sm_scm_DYCOMSrf01.csheditnightly_test/nightly_e3sm_scm_RICO.cshjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_ne4_silhs.cshjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilee4764d4ccc9ff7f4f1dcfdf2731485a8283381951637190382000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding some additional files that need to be ported over from the current clubb_silhs_devel branch. 2021-11-17 17:06:22 -0600e4764d4ccc9ff7f4f1dcfdf2731485a828338195Adding some additional files that need to be ported over fromaddjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_ne4_silhs.cshaddjenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfilecomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/subcol_SILHS.F904caa54803a26ee1064e20fd4135cfdb581ce2f991637304683000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing compilation bugs. 2021-11-19 00:51:23 -06004caa54803a26ee1064e20fd4135cfdb581ce2f99Fixing compilation bugs.editcomponents/eam/src/physics/cam/clubb_intr.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90components/eam/src/physics/cam/subcol_SILHS.F90a0a1613ab741ee785aab12b53185e0c7bf575d5f1637361754000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding ifdef SILHS preprocessor flags around a conditional in subcol_SILHS.F90 to help allow for compilation when -DSILHS is turned off. 2021-11-19 16:42:34 -0600a0a1613ab741ee785aab12b53185e0c7bf575d5fAdding ifdef SILHS preprocessor flags around a conditional in subcol_SILHS.F90editcomponents/eam/src/physics/cam/subcol_SILHS.F90diagnostic_v2_0/analyze_sensitivity_matrix.py7c10cae66009f8f17d94c1f3c4ebaac0ce51c77e1637363087000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded analyze_sensitivity_matrix.py to the diagnostic_v2_0 directory. This file was previously found only in the (old) clubb_silhs_devel branch. 2021-11-19 17:04:47 -06007c10cae66009f8f17d94c1f3c4ebaac0ce51c77eAdded analyze_sensitivity_matrix.py to the diagnostic_v2_0 directory.adddiagnostic_v2_0/analyze_sensitivity_matrix.pycime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml8da91950496adb7af36c5f0d702cb2a5be1d23201637364792000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating config_machines.xml and config_compilers.xml so that they contain all the changes that have been made recently to the (old) clubb_silhs_devel branch. 2021-11-19 17:33:12 -06008da91950496adb7af36c5f0d702cb2a5be1d2320I am updating config_machines.xml and config_compilers.xmleditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/clubb_intr.F902aae3eccbac106aeef9514c8abf6b7e80ff9930d1637703538000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed the bug where clubb_params was reported to have parameters that had values of 0. There was a second, local declaration of clubb_params that needed to be removed when clubb_params became a module variable. 2021-11-23 15:38:58 -06002aae3eccbac106aeef9514c8abf6b7e80ff9930dFixed the bug where clubb_params was reported to have parameters thateditcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_ne4_silhs.cshba623886b19d1bb3e3c061d138f3dc949bdbbb9e1640818293000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange user namelist name from "user_nl_cam" to "user_nl_eam". 2021-12-29 16:51:33 -0600ba623886b19d1bb3e3c061d138f3dc949bdbbb9eChange user namelist name from "user_nl_cam" to "user_nl_eam".editnightly_test/nightly_e3sm_ne4_silhs.cshnightly_test/nightly_e3sm_scm_BOMEX.csh0c23f58d77d9922918d5b25fb1392db25f088f021640820708000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:31:48 -06000c23f58d77d9922918d5b25fb1392db25f088f02Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_BOMEX.cshnightly_test/nightly_e3sm_scm_DYCOMSrf01.csh26aea7440d0ae3c1e437f59d0d2980b64c9222e61640820760000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:32:40 -060026aea7440d0ae3c1e437f59d0d2980b64c9222e6Change "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshbfa71a09b1a72fa06fd3aa25503e6e4c5127feff1640820849000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default" 2021-12-29 17:34:09 -0600bfa71a09b1a72fa06fd3aa25503e6e4c5127feffChange "F_SCAM5" to "F_SCAM" and "-phys cam5" to "-phys default"editnightly_test/nightly_e3sm_scm_RICO.cshcime_config/machines/config_compilers.xmlc99918ee5a320c30300dd289e3de3b5e624b1e301641243985000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the nelson's FFLAGS in config_compilers.xml 2022-01-03 15:06:25 -0600c99918ee5a320c30300dd289e3de3b5e624b1e30Updating the nelson's FFLAGS in config_compilers.xmleditcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xml055b469d8873020292fca142c7d77f60440690d51641515116000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "Updating the nelson's FFLAGS in config_compilers.xml" This is possibly temporary to allow us to go back to the last state of the compiler flags while we compile with gfortran 8. This reverts commit c99918ee5a320c30300dd289e3de3b5e624b1e30. 2022-01-06 18:25:16 -0600055b469d8873020292fca142c7d77f60440690d5Revert "Updating the nelson's FFLAGS in config_compilers.xml"editcime_config/machines/config_compilers.xmlcime_config/machines/config_compilers.xmlcime_config/machines/config_machines.xml382ef495458e95b439d464793de0f24e7aff33a81641943493000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_devel branch. 2022-01-11 17:24:53 -0600382ef495458e95b439d464793de0f24e7aff33a8I am committing a "manual cherry-pick" of git commit 1b238fe to the clubb_silhs_develeditcime_config/machines/config_compilers.xmleditcime_config/machines/config_machines.xmlcomponents/eam/src/physics/cam/micro_p3_interface.F90c9563ef663afe0f6f8ea5241ea892114365885ae1641944304000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler. 2022-01-11 17:38:24 -0600c9563ef663afe0f6f8ea5241ea892114365885aeUpdating micro_p3_interface.F90 so that it compiles on Nelson with the gfortran compiler.editcomponents/eam/src/physics/cam/micro_p3_interface.F90components/eam/src/physics/cam/clubb_intr.F90e9362052b2fd593508834067b59c8bb63c3ba8f01642028438000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding w_up_in_cloud to the pbuf, which will eventually allow it to be ported for use in another area of the model. 2022-01-12 17:00:38 -0600e9362052b2fd593508834067b59c8bb63c3ba8f0Adding w_up_in_cloud to the pbuf, which will eventually allow it to be portededitcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F902f2cde7827bf04feabf5c3ecb85b400ab2e9750e1642029037000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB). 2022-01-12 17:10:37 -06002f2cde7827bf04feabf5c3ecb85b400ab2e9750eAdding statistical output for w_up_in_cloud (stat name W_UP_IN_CL_CLUBB).editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F909df1fbd0716106e791faecd131c982b3ae1802dc1642033579000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev') rather than momentum levels ('ilev'). 2022-01-12 18:26:19 -06009df1fbd0716106e791faecd131c982b3ae1802dcThe stat output for w_up_in_cloud should be on thermodynamic levels ('lev')editcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/cam/clubb_intr.F90897a1afcceaf9c03a5e2421c631ebd9d91ec29051642115926000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am fixing some of the statistical output level listings for variable CLUBB variables. In other words, what should be on thermodynamic levels ('lev') vs. what should be on momemtum levels ('ilev'). 2022-01-13 17:18:46 -0600897a1afcceaf9c03a5e2421c631ebd9d91ec2905I am fixing some of the statistical output level listings for variable CLUBBeditcomponents/eam/src/physics/cam/clubb_intr.F90nightly_test/nightly_e3sm_scm_DYCOMSrf01.cshnightly_test/nightly_e3sm_scm_RICO.cshnightly_test/nightly_e3sm_scm_BOMEX.csh9cc3523947fc0e16063926af4819366e4415276b1645134909000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01, and RICO) to work on Nelson for the E3SM V2 code. 2022-02-17 15:55:09 -06009cc3523947fc0e16063926af4819366e4415276bI am updating the nightly E3SM SCM scripts (for BOMEX, DYCOMS-II RF01,editnightly_test/nightly_e3sm_scm_RICO.csheditnightly_test/nightly_e3sm_scm_DYCOMSrf01.csheditnightly_test/nightly_e3sm_scm_BOMEX.cshjenkins_tests/e3sm_run_gfortran_test/Jenkinsfilenightly_test/nightly_e3sm_scm_ARM97.csh94ef289947968beb12579a7f39b4ecde5cd15f6d1645142742000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd arm_97 case to the Jenkins e3sm_run_gfortran_test 2022-02-17 18:05:42 -060094ef289947968beb12579a7f39b4ecde5cd15f6dAdd arm_97 case to the Jenkins e3sm_run_gfortran_testeditjenkins_tests/e3sm_run_gfortran_test/Jenkinsfileaddnightly_test/nightly_e3sm_scm_ARM97.cshnightly_test/nightly_e3sm_scm_ARM97.csh418ff2c22e23bba4d3986205e8df83215ed471251645143204000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated the E3SM SCM runscript for ARM 97 for E3SM v2 code. 2022-02-17 18:13:24 -0600418ff2c22e23bba4d3986205e8df83215ed47125Updated the E3SM SCM runscript for ARM 97 for E3SM v2 code.editnightly_test/nightly_e3sm_scm_ARM97.cshnightly_test/nightly_e3sm_scm_ARM97.csh50bb9b393a2114b6ea19b94c4ab94fdf0595f05f1645223514000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating the ARM 97 E3SM SCM run script so that it runs with E3SM v2. 2022-02-18 16:31:54 -060050bb9b393a2114b6ea19b94c4ab94fdf0595f05fUpdating the ARM 97 E3SM SCM run script so that it runs witheditnightly_test/nightly_e3sm_scm_ARM97.cshcomponents/eam/src/physics/cam/micro_mg2_0.F90f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da721645224074000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of this hyper-annoying print statement. 2022-02-18 16:41:14 -0600f93e81d9ee9a9b37dce22bb0ffe7ae68bee0da72Getting rid of this hyper-annoying print statement.editcomponents/eam/src/physics/cam/micro_mg2_0.F90components/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/Skx_module.F90components/eam/src/physics/clubb/advance_wp2_wp3_module.F90components/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/parameters_tunable.F90components/eam/src/physics/clubb/mixing_length.F90components/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/pdf_parameter_module.F90components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90components/eam/src/physics/silhs/silhs_api_module.F90components/eam/src/physics/clubb/advance_clubb_core_module.F90components/eam/src/physics/clubb/pdf_closure_module.F90components/eam/src/physics/clubb/sigma_sqd_w_module.F90components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/clubb/mono_flux_limiter.F90components/eam/src/physics/clubb/grid_class.F90components/eam/src/physics/clubb/clubb_api_module.F90components/eam/src/physics/clubb/model_flags.F90components/eam/src/physics/clubb/constants_clubb.F90components/eam/src/physics/clubb/stats_variables.F90d2fc66198cfee1f3a7904d91e5ad172da5c036ae1645226486000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the version of CLUBB and SILHS in the brand new future CLUBB-SILHS devel branch to version 7e2a226 from February 17, 2022. 2022-02-18 17:21:26 -0600d2fc66198cfee1f3a7904d91e5ad172da5c036aeI am updating the version of CLUBB and SILHS in the brand new futureeditcomponents/eam/src/physics/clubb/clubb_api_module.F90editcomponents/eam/src/physics/clubb/advance_wp2_wp3_module.F90editcomponents/eam/src/physics/clubb/sigma_sqd_w_module.F90editcomponents/eam/src/physics/clubb/Skx_module.F90editcomponents/eam/src/physics/clubb/pdf_parameter_module.F90editcomponents/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90editcomponents/eam/src/physics/clubb/advance_helper_module.F90editcomponents/eam/src/physics/clubb/stats_variables.F90editcomponents/eam/src/physics/clubb/mixing_length.F90editcomponents/eam/src/physics/silhs/silhs_api_module.F90editcomponents/eam/src/physics/clubb/advance_windm_edsclrm_module.F90editcomponents/eam/src/physics/clubb/model_flags.F90editcomponents/eam/src/physics/clubb/advance_clubb_core_module.F90editcomponents/eam/src/physics/clubb/grid_class.F90editcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/clubb/mono_flux_limiter.F90editcomponents/eam/src/physics/clubb/pdf_closure_module.F90editcomponents/eam/src/physics/clubb/constants_clubb.F90editcomponents/eam/src/physics/clubb/parameters_tunable.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/cam/clubb_intr.F90bc68d98020d155635e77c3978097abc5751db9121645654026000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduBringing the branch up-to-date with the changes that needed to be made in order to interface with version 7e2a226 of CLUBB from February 17, 2022. 2022-02-23 16:07:06 -0600bc68d98020d155635e77c3978097abc5751db912Bringing the branch up-to-date with the changes that needed to beeditcomponents/eam/src/physics/cam/clubb_intr.F90components/eam/src/physics/clubb/advance_xm_wpxp_module.F90components/eam/src/physics/silhs/version_silhs.txtcomponents/eam/src/physics/clubb/version_clubb_core.txtc9092a6e71199123e696048843bcf416605ae0b01645802555000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated the version of CLUBB in the future clubb_silhs_devel branch to be the version as of the close of the day on February 24, 2022. 2022-02-25 09:22:35 -0600c9092a6e71199123e696048843bcf416605ae0b0I updated the version of CLUBB in the future clubb_silhs_devel branch to beeditcomponents/eam/src/physics/clubb/advance_xm_wpxp_module.F90editcomponents/eam/src/physics/silhs/version_silhs.txteditcomponents/eam/src/physics/clubb/version_clubb_core.txtcomponents/eam/src/physics/clubb/advance_helper_module.F901f572936bf191bb31671a41f8fe9daedc98bdfb41645853537000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/eam/src/physics/clubb 2022-02-25 23:32:17 -06001f572936bf191bb31671a41f8fe9daedc98bdfb4Raw-copy updating components/eam/src/physics/clubbeditcomponents/eam/src/physics/clubb/advance_helper_module.F90components/eam/src/physics/clubb/setup_clubb_pdf_params.F90components/eam/src/physics/clubb/precipitation_fraction.F90components/eam/src/physics/clubb/clubb_api_module.F908ff93a20f2306d954662162b2565070a0448009c1646199142000http://carson.math.uwm.edu/jenkins/user/larsongroupsysadminLarsonGroupSysAdminroot@carson.math.uwm.eduRaw-copy updating components/eam/src/physics/clubb 2022-03-01 23:32:22 -06008ff93a20f2306d954662162b2565070a0448009cRaw-copy updating components/eam/src/physics/clubbeditcomponents/eam/src/physics/clubb/precipitation_fraction.F90editcomponents/eam/src/physics/clubb/setup_clubb_pdf_params.F90editcomponents/eam/src/physics/clubb/clubb_api_module.F90jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile416ecc016b75103c17885956057f93aa56b6db581646262741000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelspbroels@uwm.eduFixing error where test could not find CXX definition. #46 2022-03-02 17:12:21 -0600416ecc016b75103c17885956057f93aa56b6db58Fixing error where test could not find CXX definition. 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