TESTclubb_generalized_vertical_grid_testBRANCHorigin/merge_cons_remappingStarted by user 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Model Flag for TestTurn Off Sponge Damping in Case SetupsTurn Off Model Stats in Case SetupsShorten the MC3E CaseCompileRunfalse#39630784661102164branch_clubb_test #396396false39610260SUCCESS1747956098469http://carson.math.uwm.edu/jenkins/view/Branch%20View/job/branch_clubb_test/396/run_scripts/RUN_CASESsrc/clubb_driver.F90src/CLUBB_core/grid_adaptation.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsonccccff3a95651700b7aad501c431c2f51967f7b11747955494000http://carson.math.uwm.edu/jenkins/user/0-freundlich-adenin0-freundlich-adenin0-freundlich-adenin@icloud.comadd fixes for generalized grid test 2025-05-22 18:11:34 -0500ccccff3a95651700b7aad501c431c2f51967f7b1add fixes for generalized grid testeditrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditrun_scripts/RUN_CASESeditsrc/CLUBB_core/grid_adaptation.F90editsrc/clubb_driver.F90githttp://carson.math.uwm.edu/jenkins/user/0-freundlich-adenin0-freundlich-adenin0-freundlich-adeninfalseTESTclubb_check_budget_balance_gfortranBRANCHorigin/expldiff_budget_termsStarted by user Vince LarsonvlarsonVince 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#395395false39510256SUCCESS1747955347020http://carson.math.uwm.edu/jenkins/view/Branch%20View/job/branch_clubb_test/395/src/time_dependent_input.F90src/clubb_driver.F90236d6123c9d941c1d713c80143f3bd00ff462c951740168767000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comfix variable l_sfc_already_initialized (#1231) 2025-02-21 14:12:47 -0600236d6123c9d941c1d713c80143f3bd00ff462c95fix variable l_sfc_already_initialized (#1231)editsrc/time_dependent_input.F90editsrc/clubb_driver.F90src/CLUBB_core/mono_flux_limiter.F904b242c02eac785410f827436d822838d769516731740172850000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduGetting rid of a couple of worthless lines of code. It's possible this changes an output stat, making this commit BIT_CHANGING, but not actually answer changing. 2025-02-21 15:20:50 -06004b242c02eac785410f827436d822838d76951673Getting rid of a couple of worthless lines of code. It's possible thiseditsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/mono_flux_limiter.F90808fa5089e30e9a5a569f2fda50a334d04d33c711740172965000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduShould just delete instead of commenting out. 2025-02-21 15:22:45 -0600808fa5089e30e9a5a569f2fda50a334d04d33c71Should just delete instead of commenting out.editsrc/CLUBB_core/mono_flux_limiter.F90run_scripts/run_bindiff_w_flags_requirements.txtrun_scripts/run_bindiff_w_flags.pycbb9ade398737167875554c7471bcfef6c5afa041740593012000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comadd requirements file for run_bindiff_w_flags script 2025-02-26 12:03:32 -0600cbb9ade398737167875554c7471bcfef6c5afa04add requirements file for run_bindiff_w_flags scripteditrun_scripts/run_bindiff_w_flags.pyaddrun_scripts/run_bindiff_w_flags_requirements.txtsrc/CLUBB_core/mt95.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/pdf_closure_module.F90src/Benchmark_cases/atex.F90src/CLUBB_core/saturation.F90src/CLUBB_core/stats_rad_zt_module.F90src/CLUBB_core/mean_adv.F90src/Benchmark_cases/cloud_sed_module.F90src/CLUBB_core/mixing_length.F90src/clubb_tuner.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/Benchmark_cases/astex_a209.F90src/CLUBB_core/model_flags.F90src/time_dependent_input.F90src/advance_microphys_module.F90src/G_unit_test_types/pdf_parameter_tests.F90src/bugsrad_driver.F90src/CLUBB_core/parameters_tunable.F90src/SILHS/latin_hypercube_driver_module.F90src/Benchmark_cases/gabls2.F90src/Benchmark_cases/nov11.F90src/microphys_init_cleanup.F90src/Benchmark_cases/cloud_feedback.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/Benchmark_cases/bomex.F90src/Benchmark_cases/fire.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/T_in_K_module.F90src/CLUBB_core/diagnose_correlations_module.F90src/CLUBB_core/stats_rad_zm_module.F90src/G_unit_test_types/hole_filling_tests.F90src/KK_microphys_module.F90src/estimate_scm_microphys_module.F90src/ice_dfsn_module.F90src/microphys_driver.F90src/clubb_standalone.F90src/Benchmark_cases/twp_ice.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/calc_pressure.F90src/Benchmark_cases/mpace_b.F90src/Benchmark_cases/dycoms2_rf01.F90src/CLUBB_core/advance_helper_module.F90src/hydrostatic_module.F90src/G_unit_test_types/spurious_source_test.F90src/input_fields.F90src/Benchmark_cases/rico.F90src/input_interpret.F90src/G_unit_test_types/read_corr_mtx_test.F90src/clubb_thread_test.F90src/mixed_moment_PDF_integrals.F90src/CLUBB_core/numerical_check.F90src/Benchmark_cases/mpace_a.F90src/CLUBB_core/parameters_model.F90src/CLUBB_core/stats_zm_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/stats_sfc_module.F90src/jacobian.F90src/morrison_microphys_module.F90src/simple_rad_module.F90src/clubb_driver.F90src/CLUBB_core/corr_varnce_module.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/stats_zt_module.F90src/error.F90src/coamps_microphys_driver_module.F901fcbf0455fe43a2fc873f59afedf92e0824640a41740615071000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved renaming operators `=>` from clubb_api_module (#1232) CLUBB ticket #1223 The original procedures were renamed to `<name>_api`. Now, the `clubb_api_module` just has a regular `use` and `public` statement for them. 2025-02-26 18:11:11 -06001fcbf0455fe43a2fc873f59afedf92e0824640a4Removed renaming operators `=>` from clubb_api_module (#1232)editsrc/G_unit_test_types/read_corr_mtx_test.F90editsrc/ice_dfsn_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/Benchmark_cases/mpace_b.F90editsrc/Benchmark_cases/nov11.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/mt95.F90editsrc/Benchmark_cases/rico.F90editsrc/CLUBB_core/parameters_tunable.F90editsrc/CLUBB_core/saturation.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/jacobian.F90editsrc/CLUBB_core/stats_zm_module.F90editsrc/Benchmark_cases/cloud_sed_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/Benchmark_cases/dycoms2_rf01.F90editsrc/CLUBB_core/mixing_length.F90editsrc/hydrostatic_module.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/Benchmark_cases/mpace_a.F90editsrc/CLUBB_core/corr_varnce_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/calc_pressure.F90editsrc/microphys_driver.F90editsrc/G_unit_test_types/hole_filling_tests.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/Benchmark_cases/gabls2.F90editsrc/advance_microphys_module.F90editsrc/Benchmark_cases/fire.F90editsrc/input_interpret.F90editsrc/morrison_microphys_module.F90editsrc/clubb_tuner.F90editsrc/Benchmark_cases/twp_ice.F90editsrc/clubb_thread_test.F90editsrc/CLUBB_core/stats_rad_zt_module.F90editsrc/Benchmark_cases/atex.F90editsrc/Benchmark_cases/bomex.F90editsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/mean_adv.F90editsrc/CLUBB_core/fill_holes.F90editsrc/coamps_microphys_driver_module.F90editsrc/simple_rad_module.F90editsrc/microphys_init_cleanup.F90editsrc/CLUBB_core/model_flags.F90editsrc/error.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/advance_xp3_module.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/Benchmark_cases/cloud_feedback.F90editsrc/clubb_standalone.F90editsrc/CLUBB_core/T_in_K_module.F90editsrc/mixed_moment_PDF_integrals.F90editsrc/CLUBB_core/parameters_model.F90editsrc/bugsrad_driver.F90editsrc/time_dependent_input.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/diagnose_correlations_module.F90editsrc/KK_microphys_module.F90editsrc/estimate_scm_microphys_module.F90editsrc/input_fields.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/stats_sfc_module.F90editsrc/CLUBB_core/stats_zt_module.F90editsrc/CLUBB_core/stats_rad_zm_module.F90editsrc/Benchmark_cases/astex_a209.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90run_scripts/run_bindiff_w_flags_config_core_flags.json97516ee5ba8fdaacf484c04aa71a590a439894821740726938000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a .json file for run_bindiff_w_flags that checks most of the core flags in configurable_model_flags, sectioned into 20 groups. 2025-02-28 01:15:38 -060097516ee5ba8fdaacf484c04aa71a590a43989482Added a .json file for run_bindiff_w_flags that checks most ofaddrun_scripts/run_bindiff_w_flags_config_core_flags.jsonrun_scripts/run_bindiff_w_flags_config_core_flags.json1aa85b79b7b4ba6d4c3ebf6de228f884ed5f30a51740761186000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRegrouped to decrease the total number of runs. 2025-02-28 10:46:26 -06001aa85b79b7b4ba6d4c3ebf6de228f884ed5f30a5Regrouped to decrease the total number of runs.editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoncompile/file_list/G_unit_tests_filessrc/G_unit_tests.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/saturation.F90src/CLUBB_core/mean_adv.F90src/CLUBB_core/grid_adaptation.F90src/CLUBB_core/sfc_varnce_module.F90src/CLUBB_core/sponge_layer_damping.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/model_flags.F90src/advance_microphys_module.F90input_misc/G_unit_tests.insrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/advance_helper_module.F90src/CLUBB_core/diffusion.F90src/generalized_grid_test.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/clip_explicit.F90jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilecompile/file_list/clubb_model_filessrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/turbulent_adv_pdf.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/pos_definite_module.F90src/G_unit_test_types/rev_direction_grid_test.F90be901594bb8e40f6b634f35f1488c0e5f9022e8f1740847122000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGeneralized grid (#1230) * Added the necessary grid variables to the grid type (they're hardwired for an Ascending Grid for now). I also made the necessary changes, using those new variables, to advance_wp2_wp3_module.F90. * Added code to generalize advance_xm_wpxp_module.F90. * Updated some of the boundary conditions for generalization in grid_class.F90. * Developing a unit test for CLUBB's grid functions. * Adding the ability to toggle on or off the reverse direction grid test. * Updating for development of a unit test comparing the ascending and descending grids. * I updated the generalized grid unit test to complete testing on all the variables within the grid derived type for both the ascending and descending grid directions. * I updated the code to work symmetrically for an ascending and descending grid for the zm2zt and zt2zm functions. This commit, as well as the previous commit, is BIT_CHANGING. * Updated to improve notes and comments in grid_class.F90 and to enhance the reverse grid unit tests. * Got rid of the compiler warnings in the new reverse direction grid unit test. * Updating the reverse grid unit tests so some random perturbations are added to the grid heights when they are declared either on the thermodynamic grid or on the momentum grid. * Made some changes where the fstdout stream is exclusively used and added some print statements. * Mean advection has been modified for generalized directional gridding and a test of the calls to mean advection has been added to the reverse direction unit test. * Updating diffusion so results are bit-for-bit identical between using an ascending grid and using a descending grid at -O0 optimization. This now works for both standard diffusion and also diffusion with the l_upwind_Kh_dp_term flag turned on. * I forgot to add the zm diffusion test, but the results are the same -- all pass! * I have completed the unit tests for the PDF turbulent advection subroutines and modified the appropriate sections of code so that ascending and descending grids produce a bit-for-bit match wiht -O0 optimization. * Updated code for producing a bit-for-bit match (on -O0 optimization) when comparing ascending grid direction against descending grid direction for advance_wp2_wp3. * The check for the LHS of advance_xp2_xpyp now passes. * The ascending vs. descending bit-for-bit test (wiht optimization set to -O0) now passes for advance_xp2_xpyp. * I have successfully generalized the grid for advance_windm_edscrlm. Ascending and descending runs now produce bit-for-bit results to each other under -O0 optimization with the default flag configuration. * Fixing the ascending vs. descending grid test for advance_windm_edsclrm for the case where l_imp_sfc_momentum_flux is set to false. * Only perform check when l_predict_upwp_vpwp is turned off. * This commit makes an ascending vs. descending test work for all cases for advance_xm_wpxp when the mono flux limiter is turned off. * The ascending vs. descending grid tests are finally working with the monotonic flux limiter turned on (default settings). * Removed some commented-out prints that I accidentally added during the last commit. * Updating positive_definite_module.F90 so that it works for ascending vs. descending grids. * The ascending vs. descending grid generalization test now works for the Lscale_up portion of mixing length. * The ascending vs. descending grid generalization now works successfully for Lscale_down. * Lscale is now generalized for ascending vs. descending gridding. * Updated for generalizing sfc_varnce_module * Updating advance_clubb_core_module for grid generalization. * With this commit, the ascending vs. descending grid tests works by calling advance_clubb_core twice from clubb_driver. They produce bit-for-bit results on -O0 optimization for all intent(inout) and intent(out) variables found in the call to advance_clubb_core. This has only been tested for the default flag configuration. * I am updating the ascending vs. descending grid test to check both pdf_params and pdf_params_zm. * I added pdf_implicit_coefs_terms and the sclr and edsclr family of variables to the list of variables that are checked after coming out of the calls to advance_clubb_core in the ascending vs. descending bit-for-bit grid test. * I added an improved display for the print messages for the ascending vs. descending grid test. * I moved the generalized grid test to its own file, which is called from run_clubb. * I removed much of the junk and clutter from the code. It had been added over time for local tests of ascending vs. descending grid types. * Adding the l_generalized_grid_test flag to the code. * I needed to alter the monotonic flux limiter that I just merged in from the master branch so that the ascending vs. descending grid generalization test works once again. * Updated a piece of code in the solve routine for the monotonic flux limiter for the grid generalization test. * Clarified some comments * I added a Jenkins file for the new clubb_generalized_vertical_grid_test, which performs a run comparing ascending and descending grids with -O0 optimization and expects bit-for-bit results. * The l_rev_direction_grid_test (part of the G unit tests) needs to be compiled specially with -O0 optimization. Thus, I will set the flag to run this test to .false. by default. A special Jenkins test will be made to compile with the correct optimization and run only this particular test. * I updated the generalized vertical grid Jenkins test to turn off sponge damping (thlm and rtm sponge damping) in the case files for the CGILS S6, S11, and S12 cases. * Caught a stats bug I had previously introduced for the um_ta and vm_ta stats terms when l_predict_upwp_vpwp is turned off. 2025-03-01 10:38:42 -0600be901594bb8e40f6b634f35f1488c0e5f9022e8fGeneralized grid (#1230)editsrc/CLUBB_core/grid_adaptation.F90editsrc/CLUBB_core/diffusion.F90editsrc/CLUBB_core/turbulent_adv_pdf.F90editcompile/file_list/clubb_model_fileseditsrc/CLUBB_core/model_flags.F90editsrc/CLUBB_core/grid_class.F90addsrc/G_unit_test_types/rev_direction_grid_test.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/fill_holes.F90addsrc/generalized_grid_test.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/saturation.F90editinput_misc/G_unit_tests.ineditsrc/CLUBB_core/pos_definite_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/G_unit_tests.F90addjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileeditsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/mean_adv.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/sfc_varnce_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editcompile/file_list/G_unit_tests_fileseditsrc/CLUBB_core/sponge_layer_damping.F90editsrc/clubb_driver.F90microphysics.F90fe14f38dc4183053649f580f02e2f8c540c2f06a1741018392000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdated calls to some CLUBB subroutines in the wake of recent CLUBB commits. 2025-03-03 10:13:12 -0600fe14f38dc4183053649f580f02e2f8c540c2f06aUpdated calls to some CLUBB subroutines in the wake of recent CLUBBeditmicrophysics.F90src/CLUBB_core/grid_class.F90src/bugsrad_driver.F901c06485d4a34378726c7734f4d34bce3b294695d1741120069000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI changed the variable type within grid function flip from dp to core_rknd. I then needed to make some changes to BUGSrad driver to compensate. The "dp" issue was discovered when WRF-CLUBB wouldn't compile because of it (discrepancy between dp and core_rknd in WRF-CLUBB that caused compilation errors for calls to flip from advance_xm_wpxp, etc.) 2025-03-04 14:27:49 -06001c06485d4a34378726c7734f4d34bce3b294695dI changed the variable type within grid function flip from dp toeditsrc/CLUBB_core/grid_class.F90editsrc/bugsrad_driver.F90src/CLUBB_core/advance_clubb_core_module.F900f3bc9f46f93fdd7932e6b047510c77a1c719b171741135026000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a compiling issue with CAM-CLUBB. 2025-03-04 18:37:06 -06000f3bc9f46f93fdd7932e6b047510c77a1c719b17Fixed a compiling issue with CAM-CLUBB.editsrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/saturation.F904c5fa8ce8f53dd868b93cd477e50d8f23bfd9fd81741139829000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduHopefully this helps the cpu vs. gpu tests. 2025-03-04 19:57:09 -06004c5fa8ce8f53dd868b93cd477e50d8f23bfd9fd8Hopefully this helps the cpu vs. gpu tests.editsrc/CLUBB_core/saturation.F90src/clubb_driver.F9073cc3cbd6b18b700918d2130db73eb11dab81c251741143316000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThere were some flips inside the stats code for BUGSrad that required some restructuring around kind transformation statements. 2025-03-04 20:55:16 -060073cc3cbd6b18b700918d2130db73eb11dab81c25There were some flips inside the stats code for BUGSrad that requirededitsrc/clubb_driver.F90src/CLUBB_core/stats_clubb_utilities.F905f0907576063d48845b40fafdd94c6041cc18a3a1741203326000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comEliminate GOTO statement in stats_clubb_utilities (#1233) * Eliminate jump in stats_clubb_utilities CLUBB ticket #975 Hard removed end parameter from read call GOTO marker `100` removed since `end` parameter is gone and added output of read error code to help debugging. Before this change, if the read encountered an EOF error and the jump to marker 100 happened, CLUBB would continue running (err_code=clubb_no_error) but no output files would be created. After this change, err_code will be set to clubb_fatal_error and CLUBB prints an error message and returns. 2025-03-05 13:35:26 -06005f0907576063d48845b40fafdd94c6041cc18a3aEliminate GOTO statement in stats_clubb_utilities (#1233)editsrc/CLUBB_core/stats_clubb_utilities.F90utilities/api_analysis/create_module_table.pyutilities/api_analysis/log/apiCommitmentTable.txtutilities/api_analysis/api_commitment_test.pyutilities/api_analysis/log/usageAnalyzerTable.txtutilities/api_analysis/usage_analyzer.pyutilities/api_analysis/run_full_api_diagnostics.bash4508338836c1e0e0a1221c812d5c579108e7ce8a1741205633000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdated Jenkins api_commitment_test to python3 (#1235) sys_admin ticket sys_admin#836 * Updated Jenkins api_commitment_test to python3 TEN YEARS OF GLORIOUS FALSE PASSING DESTROYED BY TWO NITPICKERS AND CHATGPT! *Insert dab here* Translated script to python3, tightened file handling, added main function and argparse structure to create_module_table.py * Added comments to run_full_api_diagnostics.bash * Fixed usage_analyzer Commented out the calls to usage_analyzer and create_module_table from the bash script since we don't want to create those outputs for Jenkins. * Modified api_commitment_test so it can search through individual files * Commented out CLUBB standalone test since it is not a good emulation of a host model 2025-03-05 14:13:53 -06004508338836c1e0e0a1221c812d5c579108e7ce8aUpdated Jenkins api_commitment_test to python3 (#1235)deleteutilities/api_analysis/log/usageAnalyzerTable.txteditutilities/api_analysis/create_module_table.pydeleteutilities/api_analysis/log/apiCommitmentTable.txteditutilities/api_analysis/run_full_api_diagnostics.basheditutilities/api_analysis/usage_analyzer.pyeditutilities/api_analysis/api_commitment_test.pyjenkins_tests/clubb_api_commitment_test/Jenkinsfileutilities/api_analysis/run_full_api_diagnostics.bashd824f948f8e24cead121bd6aba06192beab0ded71741207048000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed Jenkins api_commitment_test (#1236) CLUBB ticket sys_admin#836 Fixed logical evaluation at the end of the bash script Commented out the table outputs in the Jenkins file because they don't work and nobody would look at them anyways 2025-03-05 14:37:28 -0600d824f948f8e24cead121bd6aba06192beab0ded7Fixed Jenkins api_commitment_test (#1236)editutilities/api_analysis/run_full_api_diagnostics.basheditjenkins_tests/clubb_api_commitment_test/Jenkinsfilesrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90892097df87f38b5899c7f25e8c337433133cd4cf1741219550000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded some missing acc parallel statments around some the loops I added to the code for the grid generalization test. 2025-03-05 18:05:50 -0600892097df87f38b5899c7f25e8c337433133cd4cfAdded some missing acc parallel statments around some the loopseditsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/stats_clubb_utilities.F901177fba4274d8f16cea53d41888955c18fd0c7dd1741219960000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixed a bug 2025-03-05 18:12:40 -06001177fba4274d8f16cea53d41888955c18fd0c7ddFixed a bugeditsrc/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/advance_wp2_wp3_module.F90d2b125b12117d18474f2093b40e3e575a93422e71741223016000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI have no idea if it's appropriate to include gr in this statment, but I'm just basically throwing dung at the wall at this point. We'll see what sticks. 2025-03-05 19:03:36 -0600d2b125b12117d18474f2093b40e3e575a93422e7I have no idea if it's appropriate to include gr in this statment,editsrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90c226fa8c4bf5d9977ad208e18f57779e5711ff5d1741367211000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "I have no idea if it's appropriate to include gr in this statment," This reverts commit d2b125b12117d18474f2093b40e3e575a93422e7. 2025-03-07 11:06:51 -0600c226fa8c4bf5d9977ad208e18f57779e5711ff5dRevert "I have no idea if it's appropriate to include gr in this statment,"editsrc/CLUBB_core/advance_wp2_wp3_module.F90jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfileinput_misc/G_unit_tests.inbd0d4f70434d41cb4d5237f05587b5edf875d5201741378827000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a special G unit Jenkins test for the Reverse Direction Grid Unit Test. This test is different than the other G unit tests because it requires a special compilation at -O0 optimization. 2025-03-07 14:20:27 -0600bd0d4f70434d41cb4d5237f05587b5edf875d520Added a special G unit Jenkins test for the Reverse Directioneditinput_misc/G_unit_tests.inaddjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfileinput_misc/G_unit_tests.in9a6ea30fe782b73edf356a7c126a7a3d71e534521741378967000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI accidentally committed G_unit_tests.in as part of my previous commit. I didn't want to do that. This commits reverts the previous commit for only that file. 2025-03-07 14:22:47 -06009a6ea30fe782b73edf356a7c126a7a3d71e53452I accidentally committed G_unit_tests.in as part of my previous commit.editinput_misc/G_unit_tests.injenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile62529da84f1d4a64ad33c0da7549a43025d045c91741380674000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI forgot to update the test name in the Jenkinsfile. 2025-03-07 14:51:14 -060062529da84f1d4a64ad33c0da7549a43025d045c9I forgot to update the test name in the Jenkinsfile.editjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfilesrc/CLUBB_core/mono_flux_limiter.F904ad28abbf7c6d9da74b5dc738f63a79ede657e1c1741387523000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI discovered that I inadvertently change an $acc statement that is found in the monotonic flux limiter (why is it ALWAYS the monotonic flux limiter?) back in be90159. In this commit, I am setting the $acc statement back to what it is supposed to be. 2025-03-07 16:45:23 -06004ad28abbf7c6d9da74b5dc738f63a79ede657e1cI discovered that I inadvertently change an $acc statement thateditsrc/CLUBB_core/mono_flux_limiter.F90src/clubb_standalone.F90src/generalized_grid_test.F90src/clubb_driver.F90src/CLUBB_core/error_code.F90b01f0e8e8f1ed4635a6c8cbef0f0a730351305b21741731122000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThe generalized grid test should not output a clubb fatal error when it fails. Rather, they should output a unique error code specific to their failure. Otherwise, failures due to numerical instability, etc., will be confused as generalized grid failures in the Jenkins tests. 2025-03-11 17:12:02 -0500b01f0e8e8f1ed4635a6c8cbef0f0a730351305b2The generalized grid test should not output a clubb fatal error when iteditsrc/generalized_grid_test.F90editsrc/clubb_driver.F90editsrc/clubb_standalone.F90editsrc/CLUBB_core/error_code.F90run_scripts/run_clubb_w_varying_flags.py9cbf31890998651dc6a36c32990fc9e8771b4d7c1741831876000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added a stripped down version of the run_bindiff_w_flags.py script that simply reads in the JSON file and runs CLUBB with all the different flag setting groups listed. It stores the flag files and the model output in the working directory. It does not do anything fancy like checkout the git repository and compile or compare results. 2025-03-12 21:11:16 -05009cbf31890998651dc6a36c32990fc9e8771b4d7cI added a stripped down version of the run_bindiff_w_flags.py scriptaddrun_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_clubb_w_varying_flags.py108815d5afea2ebd26c3611c760288b9e56e454c1741880307000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduOne of the previous issues with this python script is that it suppressed the output of the bash script it was running (run_scm_all.bash). It is important to see what cases successfully ran and what cases failed. I have altered the script so that it doesn't suppress the output of run_scm_all.bash. Note: the output from the bash script won't be printed to output until all the cases in run_scm_all.bash have been run to completion. 2025-03-13 10:38:27 -0500108815d5afea2ebd26c3611c760288b9e56e454cOne of the previous issues with this python script is that iteditrun_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_clubb_w_varying_flags.py25168201548b7ac24d9a4b58a1b55f742479755e1741911256000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am setting the exit_code for the python script to be based on what is passed out from the bash script for the set of run_scm_all.bash commands for each flag grouping. It any flag test fails, the overall exit code from the test will also be set to a fail result. 2025-03-13 19:14:16 -050025168201548b7ac24d9a4b58a1b55f742479755eI am setting the exit_code for the python script to be based oneditrun_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_clubb_w_varying_flags.pyfd6d3ca5c2e22280c5faffe4e79307f3956f17c91741916556000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added some helpful print statements and imported "sys" for the sys.exit statement. 2025-03-13 20:42:36 -0500fd6d3ca5c2e22280c5faffe4e79307f3956f17c9I added some helpful print statements and imported "sys" for theeditrun_scripts/run_clubb_w_varying_flags.pyjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile1ae402390b203de58866e57af503d9641df0c4211741917707000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduChanging the generalized vertical grid Jenkins test to use the new run_clubb_w_varying_flags.py python script instead of the traditional run_scm_all.bash. 2025-03-13 21:01:47 -05001ae402390b203de58866e57af503d9641df0c421Changing the generalized vertical grid Jenkins test to use the neweditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilerun_scripts/run_clubb_w_varying_flags.pyjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile02f49f2feca508a3bdc6f881673d23f576add9711741932830000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduWhen the run_clubb_w_varying_flags.py script is running a generalized vertical grid test, use a stats file that has a greatly reduced number of stats. Stats aren't important for this test. We don't want to eat up too much storage space or waste extra time with stats. 2025-03-14 01:13:50 -050002f49f2feca508a3bdc6f881673d23f576add971When the run_clubb_w_varying_flags.py script is running a generalizededitjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileeditrun_scripts/run_clubb_w_varying_flags.pyjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile78cba21967b128a4aa8c7107164c9d80aaee7e431741958038000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating the Jenkinsfile for the CLUBB generalized vertical grid test so we can truly turn off all stats. 2025-03-14 08:13:58 -050078cba21967b128a4aa8c7107164c9d80aaee7e43Updating the Jenkinsfile for the CLUBB generalized vertical grid testeditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilerun_scripts/run_clubb_w_varying_flags.pye4aa2c379ef53a757d44d3674c70e75b2536aa461741958369000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRevert "When the run_clubb_w_varying_flags.py script is running a generalized" This reverts commit 02f49f2feca508a3bdc6f881673d23f576add971. This commit was problematic and is no longer necessary in light of commit 78cba21. 2025-03-14 08:19:29 -0500e4aa2c379ef53a757d44d3674c70e75b2536aa46Revert "When the run_clubb_w_varying_flags.py script is running a generalized"editrun_scripts/run_clubb_w_varying_flags.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/bootstrap_plots.pyutilities/sens_matrix/set_up_dashboard_inputs.py0dc4761ff2d0f0c95b3f103b0112d63a2048cc971742056441000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Shut off bootstrap fig display, set useBootstrap=F, and improved fonts on scatterplots. For #910. 2025-03-15 11:34:01 -05000dc4761ff2d0f0c95b3f103b0112d63a2048cc97QuadTune: Shut off bootstrap fig display, set useBootstrap=F, and improved fonts on scatterplots.editutilities/sens_matrix/bootstrap_plots.pyeditutilities/sens_matrix/create_figs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_figs.pybad478764e6262238f36f902bb45c437b49ee3de1742390280000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Improve plot titles, add (a), (b), (c) to subpanels, etc. For #910. 2025-03-19 08:18:00 -0500bad478764e6262238f36f902bb45c437b49ee3deQuadTune: Improve plot titles, add (a), (b), (c) to subpanels, etc.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_figs.py10b86f1f478d76bb38a0aaebc7e5fefde504908c1742397471000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Remove dependence of QuadTune code on file analyze_sensitivity_matrix.py. This required copying some functions from analyze_sensitivity_matrix.py to other files. For #910. 2025-03-19 10:17:51 -050010b86f1f478d76bb38a0aaebc7e5fefde504908cQuadTune: Remove dependence of QuadTune code on file analyze_sensitivity_matrix.py.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/create_figs.pyutilities/sens_matrix/bootstrap_calculations.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/create_bootstrap_figs.pyutilities/sens_matrix/bootstrap_plots.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/create_nonbootstrap_figs.pyutilities/sens_matrix/do_bootstrap_calcs.pyutilities/sens_matrix/create_figs.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/analyze_sensitivity_matrix.pydc67b8c820712a1ea7b4cb9c1bf86a648ce08ee61742400434000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Rename files. For #910. 2025-03-19 11:07:14 -0500dc67b8c820712a1ea7b4cb9c1bf86a648ce08ee6QuadTune: Rename files.addutilities/sens_matrix/create_bootstrap_figs.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pydeleteutilities/sens_matrix/bootstrap_plots.pyaddutilities/sens_matrix/quadtune_driver.pydeleteutilities/sens_matrix/sens_matrix_dashboard.pyaddutilities/sens_matrix/set_up_inputs.pydeleteutilities/sens_matrix/create_figs.pyaddutilities/sens_matrix/create_nonbootstrap_figs.pydeleteutilities/sens_matrix/bootstrap_calculations.pyaddutilities/sens_matrix/do_bootstrap_calcs.pydeleteutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/create_nonbootstrap_figs.pyeb8cc04963e2d22f2568e0bd517cb3c381edbfa11742492785000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Set plot-type flags in set_up_inputs.py and then feed them into create_nonbootstrap_figs.py. For #910. 2025-03-20 12:46:25 -0500eb8cc04963e2d22f2568e0bd517cb3c381edbfa1QuadTune: Set plot-type flags in set_up_inputs.py and then feed them into create_nonbootstrap_figs.py.editutilities/sens_matrix/quadtune_driver.pyeditutilities/sens_matrix/set_up_inputs.pyeditutilities/sens_matrix/create_nonbootstrap_figs.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/create_nonbootstrap_figs.pyb1e6e895ca45b2170bc75489232af169397b99d81742575852000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Move import statements to top of file. Move abbreviateParamsNames to set_up_inputs. Neaten source code a bit. For #910. 2025-03-21 11:50:52 -0500b1e6e895ca45b2170bc75489232af169397b99d8QuadTune: Move import statements to top of file. Move abbreviateParamsNames to set_up_inputs. Neaten source code a bit.editutilities/sens_matrix/set_up_inputs.pyeditutilities/sens_matrix/create_nonbootstrap_figs.pyeditutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/config.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/config_example.pyutilities/sens_matrix/create_nonbootstrap_figs.pye15a1b9f10f800c4d1c59f2f2a383b812e4f4c151742651150000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Create config file where a user can input "namelist" info about his obs and simulations. Also add an example config file so that the user can keep multiple namelists. Do minor refactorings. For #910. 2025-03-22 08:45:50 -0500e15a1b9f10f800c4d1c59f2f2a383b812e4f4c15QuadTune: Create config file where a user can input "namelist" info about his obs and simulations. Also add an example config file so that the user can keep multiple namelists. Do minor refactorings.editutilities/sens_matrix/set_up_inputs.pyeditutilities/sens_matrix/quadtune_driver.pyaddutilities/sens_matrix/config.pyaddutilities/sens_matrix/config_example.pyeditutilities/sens_matrix/create_nonbootstrap_figs.pyutilities/sens_matrix/config.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/config_example.pyutilities/sens_matrix/create_nonbootstrap_figs.pyutilities/sens_matrix/test_analyzeSensMatrix.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/analyze_sensitivity_matrix.py53b8ea738d8dbf0f4d617272d3e4db9ac6cba98c1742680027000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Rename "linSoln" to "globTuned" in order to denote the global simulation result after tuning. Add docstrings to more functions. For #910. 2025-03-22 16:47:07 -050053b8ea738d8dbf0f4d617272d3e4db9ac6cba98cQuadTune: Rename "linSoln" to "globTuned" in order to denote the global simulation result after tuning. Add docstrings to more functions.editutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/quadtune_driver.pyeditutilities/sens_matrix/test_analyzeSensMatrix.pyeditutilities/sens_matrix/config.pyeditutilities/sens_matrix/config_example.pyeditutilities/sens_matrix/create_nonbootstrap_figs.pyeditutilities/sens_matrix/set_up_inputs.pysrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/interpolation.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/clubb_driver.F90src/generalized_grid_test.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsonjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilesrc/CLUBB_core/advance_xp2_xpyp_module.F90969bc4aa2a1db2664c0f92b98d2df5544c554c321742704780000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb test correct gg (#1237) * Updated the generalized vertical grid test to use the run_bindiff_w_flags_config_core_flags.json file, which performs 18 overall flag configuration file tests and includes almost every configurable model flag found in CLUBB core. * Fixed a bug. This was caught by running the new hybrid PDF after compiling with the gfortran debug compiler script. * The CLUBB code requires l_min_xp2_from_corr_wx and l_enable_relaxed_clipping to always have opposite values. * Finally fixing the bug where Cx_fnc_Richardson needs to be interpolated to thermodynamic levels in order to be used as C11_Skw_fnc. * I fixed an issue with the generalized grid when the expldiff of rtm and thlm is enabled. * The variable gr now needs to be passed into subroutine pvertinterp (which was formerly found in interpolation.F90) in order to generalize the grid. This created a circular dependency, for grid_class references interpolation, and now interpolation needed to reference grid_class in order to use type grid. This road block prevented the model from compiling. I moved subroutine pvertinterp to advance_clubb_core in order to solve the problem. * Moving the flag required editing the delimiters. * I fixed a bug in the generalized grid test code that was resulting in pdf_implicit_coefs_terms scalar variables not being read in correctly for the flipped (descending) grid. * Improved some error handling in clubb_driver.F90 * Fixed an issue where ascending and descending grids were producing results that were not bit-for-bit to each other where centered discretization was used. The issue occurred because 3 or more terms were being added together in opposite orders between ascending and descending grids. This fix ensures terms are added in the same order. * Commiting changes to keep calculation order the same for additions involving at least 3 terms from different vertical levels between ascending and descending grids.` * I removed bugs that were causing failures of the bit-for-bit matching test (at -O0 optimization) between ascending and descending grids. This group of fixes related to the code that calls pdf_closure twice and calls the trapezoidal rule code. * I have fixed the ascending vs. descending grid error for the situation where l_partial_upwind_wp3 is enabled. * I am removing the flag setting of l_mono_flux_lim_thlm to .false. in flag group 15 of the ascending vs. descending grid tests. Problem: Removing the constraints on thlm was causing one case (MC3E) to blow up with a floating point exception in Morrison microphysics. The issue was that a spike caused an extremely cold temperature to be found. There is a line of code that takes the difference between freezing/melting point temperature (273.15 K) and the temperature at the grid level or sample point, multiplies it by constant, and then takes EXP to that product. The large difference between temperature and freezing/melting point, owing to the spike, caused a numerical overflow to occur and the case to fail with a FPE. Solution: There isn't any relevant code found in the monotonic flux limiter that doesn't get tested if l_mono_flux_lim_thlm remains at a setting of .true. The other parts of conditionals are covered by setting l_mono_flux_lim_rtm to .false. The only parts of the code unique to l_mono_flux_lim_thlm are the recording of stats related directly to thlm. Thus, it makes sense to keep l_mono_flux_lim_thlm set to .true. for the stability of the run while turning off the other monotonic flux limiter flags. * Updated the code to use break or return when clubb fatal error is encountered, which is more consistent with the way CLUBB does business now, then simply Fortran stop in place. This also allows the generalized grid test to finally pass for all cases and all flag sets. 2025-03-22 23:39:40 -0500969bc4aa2a1db2664c0f92b98d2df5544c554c32Clubb test correct gg (#1237)editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/interpolation.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileeditsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/generalized_grid_test.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/advance_wp2_wp3_module.F90utilities/sens_matrix/config.pyutilities/sens_matrix/quadtune_driver.pyutilities/sens_matrix/config_example.pyutilities/sens_matrix/analyze_sensitivity_matrix.py6efe77bfc4e96b91f34aa4fd966aa39965f9b30f1742825114000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Rename "setUpInputs" to "setUpConfig". Rename other variables. Improve comments in quadtune_driver.py. For #910. 2025-03-24 09:05:14 -05006efe77bfc4e96b91f34aa4fd966aa39965f9b30fQuadTune: Rename "setUpInputs" to "setUpConfig". Rename other variables. Improve comments in quadtune_driver.py.editutilities/sens_matrix/config.pyeditutilities/sens_matrix/quadtune_driver.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/config_example.pyutilities/sens_matrix/config.pyutilities/sens_matrix/set_up_inputs.pyutilities/sens_matrix/create_nonbootstrap_figs.py951970e2ee87a3431ce44ce41bb880aac66ac8b81742911216000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Read in obs for custom metrics automatically from obs file. For #910. 2025-03-25 09:00:16 -0500951970e2ee87a3431ce44ce41bb880aac66ac8b8QuadTune: Read in obs for custom metrics automatically from obs file.editutilities/sens_matrix/config.pyeditutilities/sens_matrix/create_nonbootstrap_figs.pyeditutilities/sens_matrix/set_up_inputs.pysrc/CLUBB_core/advance_clubb_core_module.F90src/clubb_driver.F90"src/print *, \"thlm_init = \", thlm_init.f90"src/CLUBB_core/stats_clubb_utilities.F90ed9ae72a5eb28dbc036dd3e14b9312eea840feac1743109355000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb driver upgrades (#1225) * Moving stuff around in preparation for preparation for GPUization * Small modifications, adding explicit loops * Small bug fix and explicit loop additions * Removing ngrdcol dimension from initialize_clubb, essentially reverting changes. * Removing array slicing by using local variables of nzm/nzt dim * GPUization of initialization variables * Removing need for single_col versions of the pdf_params, this (weirdly) saves a huge amount of runtime * Adding comment * Adding 2D version of various routines, including initialize_clubb, but only calling initialize_clubb with 1 column. * Fixes to make work with latest clubb changes * Merging with master 2025-03-27 16:02:35 -0500ed9ae72a5eb28dbc036dd3e14b9312eea840feacClubb driver upgrades (#1225)add"src/print *, \"thlm_init = \", thlm_init.f90"editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90src/clubb_driver.F9013ad3cfe7872df2fe91250265f4a81baa621a8821743150057000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduHot fix to GPU code. These _init variables need to be copied to the GPU 2025-03-28 03:20:57 -050013ad3cfe7872df2fe91250265f4a81baa621a882Hot fix to GPU code. These _init variables need to be copied to the GPUeditsrc/clubb_driver.F90src/clubb_driver.F909c51ff7531cfb93015cf6eea5b4604a0277a680b1743181151000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSecond hot fix for more _init variables that need to be copied in. RESOLVED:ed9ae72a5eb28dbc036dd3e14b9312eea840feac 2025-03-28 11:59:11 -05009c51ff7531cfb93015cf6eea5b4604a0277a680bSecond hot fix for more _init variables that need to be copied in. RESOLVED:ed9ae72a5eb28dbc036dd3e14b9312eea840feaceditsrc/clubb_driver.F90src/clubb_driver.F9084d6d6251e99a62c6eeb6253dbf3f49c87a207c71743206514000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThird hotfix of the day. This last change teased out a sneaky potentially fatal bug for cases using l_cloud_sed=.true., making this a BIT_CHANGING fix. Also need to include BIT_CHANGING:13ad3cfe7872df2fe91250265f4a81baa621a882 because that was a fix to a fatal bug in some cases. Also including some other small fixes that weren't breaking any tests, but might've caused problems in the future. 2025-03-28 19:01:54 -050084d6d6251e99a62c6eeb6253dbf3f49c87a207c7Third hotfix of the day. This last change teased out a sneaky potentially fatal bug for cases using l_cloud_sed=.true., making this a BIT_CHANGING fix. Also need to include BIT_CHANGING:13ad3cfe7872df2fe91250265f4a81baa621a882 because that was a fix to a fatal bug in some cases. Also including some other small fixes that weren't breaking any tests, but might've caused problems in the future.editsrc/clubb_driver.F90"src/print *, \"thlm_init = \", thlm_init.f90"3cd302b61f93039796aa0b1c8cfda1005c3926b21743206538000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving accidentally added file. 2025-03-28 19:02:18 -05003cd302b61f93039796aa0b1c8cfda1005c3926b2Removing accidentally added file.delete"src/print *, \"thlm_init = \", thlm_init.f90"src/clubb_driver.F90src/generalized_grid_test.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsonsrc/CLUBB_core/setup_clubb_pdf_params.F90src/SILHS/silhs_api_module.F90src/SILHS/latin_hypercube_driver_module.F90src/pdf_hydromet_microphys_wrapper.F90compile/file_list/clubb_model_filessrc/CLUBB_core/precipitation_fraction.F902f9bef63460fadecdb3f3679ef29d18beafba72e1744204547000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb silhs gg (#1239) * I added new subroutine pdf_hydromet_microphys_prep to encompass the code that calls the hydrometeor PDF and then ultimately handles the setup of SILHS sample points when SILHS is in use. * Placeholder subroutine for SILHS grid generalization test. * I have now connected the new subroutine to run_clubb. The results for all cases match bit-for-bit to the previous revision. * Cleaning up from the refactoring of the hydrometeor PDF and SILHS code into a wrapper subroutine. * I'm moving pdf_hydromet_microphys_prep to its own file to avoid circular dependency once it finally needs to be called from the generalized grid test code soon. * Added some code to the SILHS generalized grid test. * Changes to make this a fully functioning grid generalization test for the part of the microphysics code that encompasses setup_pdf_parameters and hydrometeor_mixed_moments. * I have completed the code for the SILHS generalized grid test. * I generalized precipitation fraction for ascending vs. descending grid. * Fixing a bug that I noticed in the precipitation fraction calculation when the component precip frac calculation was set to option 1 (which is currently not the default). * The code should now be successfully grid-generalized for SILHS. The ascending vs descending grid test should work now for all cases. * Updating the core flags .json file to change some of the SILHS flags. * I moved the call to advance_clubb_core_api (the default run option) to the top of the "if" block, ahead of the grid generalization test option that is now in the "else" block. * Adding a new, hardwired constant flag called l_ascending_grid and setting it to true in clubb_driver.F90. * Keeping lines under 100 characters in length. * Making it so the ascending vs. descending grid tests pass for the l_lh_random_start flag. 2025-04-09 08:15:47 -05002f9bef63460fadecdb3f3679ef29d18beafba72eClubb silhs gg (#1239)editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/SILHS/latin_hypercube_driver_module.F90addsrc/pdf_hydromet_microphys_wrapper.F90editsrc/clubb_driver.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/generalized_grid_test.F90editsrc/SILHS/silhs_api_module.F90editcompile/file_list/clubb_model_fileseditsrc/CLUBB_core/precipitation_fraction.F90READMEe25ec88b5e538d090d1d634e3602cf637a24251c1744653060000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd a blank line to README in order to note BIT_CHANGING:969bc4aa2a1db2664c0f92b98d2df5544c554c32 However, the change is only to stats output, not the answer itself. See https://github.com/larson-group/clubb/issues/1170#issuecomment-2802019464. 2025-04-14 12:51:00 -0500e25ec88b5e538d090d1d634e3602cf637a24251cAdd a blank line to README in order to note BIT_CHANGING:969bc4aa2a1db2664c0f92b98d2df5544c554c32editREADMEsrc/CLUBB_core/parameters_tunable.F90cb9c724afbacef68636111b671d273df57166a6d1745348257000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated adj_low_res_nu for use with a generalized grid. It is not called from within advance_clubb_core or from within SILHS. It is not necessary to be generalized for tests within standalone CLUBB. However, it is necessary to generalize this code for use within host models, particularly for CAM and E3SM. 2025-04-22 13:57:37 -0500cb9c724afbacef68636111b671d273df57166a6dI updated adj_low_res_nu for use with a generalized grid. It iseditsrc/CLUBB_core/parameters_tunable.F90src/G_unit_test_types/rev_direction_grid_test.F90fa5edf3c9549a7bf9b076506514aa7445f322c431745356651000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSince the call to adj_low_res_nu is not tested by CLUBB's main ascending vs descending grid test (since it is not called from within advance_clubb_core or from SILHS), I added it to the reverse grid direction G Unit test so that the results from ascending vs. descending grids get checked. 2025-04-22 16:17:31 -0500fa5edf3c9549a7bf9b076506514aa7445f322c43Since the call to adj_low_res_nu is not tested by CLUBB's maineditsrc/G_unit_test_types/rev_direction_grid_test.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/pdf_closure_module.F90src/CLUBB_core/grid_class.F90src/Benchmark_cases/atex.F90utilities/parse_argument_list/replace_err_code_type.pysrc/CLUBB_core/sfc_varnce_module.F90src/CLUBB_core/grid_adaptation.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_standalone.F90src/CLUBB_core/output_netcdf.F90src/advance_microphys_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/parameters_tunable.F90src/G_unit_test_types/spurious_source_test.F90src/generalized_grid_test.F90src/SILHS/silhs_api_module.F90src/SILHS/latin_hypercube_driver_module.F90src/clubb_thread_test.F90src/CLUBB_core/numerical_check.F90src/CLUBB_core/lapack_wrap.F90src/CLUBB_core/precipitation_fraction.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/SILHS/output_2D_samples_module.F90src/CLUBB_core/matrix_solver_wrapper.F90src/jacobian.F90src/simple_rad_module.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/corr_varnce_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/error.F90src/pdf_hydromet_microphys_wrapper.F90src/G_unit_test_types/rev_direction_grid_test.F90src/CLUBB_core/err_info_type_module.F90dbf71d44dd03cd50b69bcb1d20378cb5679b9bf81745422568000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comErr code struct (#1238) Added err_info type to CLUBB to extend old err_code integer flag CLUBB ticket #975 Created a new err_info type replacing the old err_code integer. It contains MPI rank and (OMP) chunk index so we can identify the specific process that caused an error. It also contains latitude and longitude so a person trying to debug a host model run can pinpoint the column that caused an error. It contains error headers that combine all the info into a string that can be printed when an error happens. And it comes with subroutines that handle initialization, value setting, and cleanup. Host models will be modified accordingly. Possible TODO: Implement a subroutine that identifies the index of the column with the error after the fact so we can have more specific info at the higher call levels by applying `where` to the err_code member array. 2025-04-23 10:36:08 -0500dbf71d44dd03cd50b69bcb1d20378cb5679b9bf8Err code struct (#1238)editsrc/CLUBB_core/parameters_tunable.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/sfc_varnce_module.F90editsrc/clubb_standalone.F90editsrc/simple_rad_module.F90editsrc/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/corr_varnce_module.F90editsrc/CLUBB_core/grid_adaptation.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/output_netcdf.F90editsrc/advance_microphys_module.F90addsrc/CLUBB_core/err_info_type_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/mixing_length.F90addutilities/parse_argument_list/replace_err_code_type.pyeditsrc/CLUBB_core/matrix_solver_wrapper.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/SILHS/silhs_api_module.F90editsrc/error.F90editsrc/clubb_thread_test.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/G_unit_test_types/rev_direction_grid_test.F90editsrc/CLUBB_core/grid_class.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/lapack_wrap.F90editsrc/jacobian.F90editsrc/SILHS/output_2D_samples_module.F90editsrc/CLUBB_core/precipitation_fraction.F90editsrc/generalized_grid_test.F90editsrc/clubb_driver.F90editsrc/Benchmark_cases/atex.F90src/clubb_driver.F9006dbd2718a302cc7d7c18ca420018b03183422011745443868000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFix that causes BFB GPU tests to break. We need to copy these variables to the CPU before outputtin to disk. It's very unclear why the BFB GPU test ever passed without this. 2025-04-23 16:31:08 -050006dbd2718a302cc7d7c18ca420018b0318342201Fix that causes BFB GPU tests to break. We need to copy these variables to the CPU before outputtin to disk. It's very unclear why the BFB GPU test ever passed without this.editsrc/clubb_driver.F90src/clubb_driver.F90e4035f733e2b063b4137c59eb357052690af16261745524323000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduFix segfault involving initialization of CLUBB when l_add_dycore_grid=F 2025-04-24 14:52:03 -0500e4035f733e2b063b4137c59eb357052690af1626Fix segfault involving initialization of CLUBB when l_add_dycore_grid=Feditsrc/clubb_driver.F90src/clubb_driver.F906ae905def34beb24f3fbbf571e56fd2e7214d4d51745524766000http://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkesdomke@uwm.eduRemoved unnecessary print statements in clubb_driver 2025-04-24 14:59:26 -05006ae905def34beb24f3fbbf571e56fd2e7214d4d5Removed unnecessary print statements in clubb_drivereditsrc/clubb_driver.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_xp2_xpyp_module.F9028786c5f20191baf6c3f9c3a8934f7f9c7ffc3ff1745538547000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comErr code gpu fix (#1241) * GPU fix for new err_code system. * Another small fix for OMP GPU code. 2025-04-24 18:49:07 -050028786c5f20191baf6c3f9c3a8934f7f9c7ffc3ffErr code gpu fix (#1241)editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsoninput/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/model_flags.F90a36b7a66d8742e772953fb745dcfb8243120412b1745614161000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduRunning CLUBB with l_stability_correct_tau_zm = .true. now requires setting l_damp_wp2_using_em to .false. Thus, these two settings now appear together in flag set 9. Since l_damp_wp2_using_em was already set to .false. for flag set 11, I simply swapped flag sets for l_damp_wp2_using_em = .false. (moved from flag set 11 to set 9) and l_C2_cloud_frac = .true. (moved from flag set 9 to set 11). 2025-04-25 15:49:21 -0500a36b7a66d8742e772953fb745dcfb8243120412bRunning CLUBB with l_stability_correct_tau_zm = .true. now requireseditinput/tunable_parameters/configurable_model_flags.ineditsrc/CLUBB_core/model_flags.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoninput/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/model_flags.F909371045e8739a4412dbe93f8948aacc9682d48521745614367000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThese changes were accidentally made during the previous commit. The are being returned to their normal setting in this commit. 2025-04-25 15:52:47 -05009371045e8739a4412dbe93f8948aacc9682d4852These changes were accidentally made during the previous commit. The areeditsrc/CLUBB_core/model_flags.F90editinput/tunable_parameters/configurable_model_flags.inREADMEf9d92113871bdf87b5e3147db6740ab654dc09671745676518000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTechnically, the following two commits are not BFB BIT_CHANGING:a36b7a66d8742e772953fb745dcfb8243120412b BIT_CHANGING:9371045e8739a4412dbe93f8948aacc9682d4852 but the latter code change undoes the bit-changing effects of the former, and so the net effect is nil. 2025-04-26 09:08:38 -0500f9d92113871bdf87b5e3147db6740ab654dc0967Technically, the following two commits are not BFBeditREADMEsrc/clubb_driver.F9071eb9b3c5fd65c33905f17be8476a1dea89a25111745865214000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix that has somehow gone unfound until recently. RESOLVED:f9d92113871bdf87b5e3147db6740ab654dc0967 2025-04-28 13:33:34 -050071eb9b3c5fd65c33905f17be8476a1dea89a2511Small bug fix that has somehow gone unfound until recently. RESOLVED:f9d92113871bdf87b5e3147db6740ab654dc0967editsrc/clubb_driver.F90run_scripts/README4fb7b70b67db3fa7decde426bed55920a12d7d4e1745946448000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduChanging readme to add BIT_CHANGING:71eb9b3c5fd65c33905f17be8476a1dea89a2511 since that commit was a bug fix, so technically it was bit changing. 2025-04-29 12:07:28 -05004fb7b70b67db3fa7decde426bed55920a12d7d4eChanging readme to add BIT_CHANGING:71eb9b3c5fd65c33905f17be8476a1dea89a2511 since that commit was a bug fix, so technically it was bit changing.editrun_scripts/READMEsrc/SILHS/parameters_silhs.F90src/SILHS/lh_microphys_var_covar_module.F90src/estimate_scm_microphys_module.F90src/SILHS/est_kessler_microphys_module.F90src/SILHS/silhs_api_module.F90src/lh_microphys_driver_module.F90src/SILHS/latin_hypercube_driver_module.F90src/pdf_hydromet_microphys_wrapper.F90src/microphys_init_cleanup.F903a3e3d57af0db172255568b51e92976571b7ad421746130418000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved renaming operators `=>` and wrapper subroutines from silhs_api_module (#1240) CLUBB ticket #1223 * Removed renaming operators `=>` from silhs_api_module This just affected latin_hypercube_2D_output_api and stats_accumulate_lh_api. * Removed definitions of wrapper subroutines from silhs_api_module Removed wrappers est_kessler_microphys_api, lh_microphys_var_covar_driver_api, set_default_silhs_config_flags_api, initialize_silhs_config_flags_type_api, print_silhs_config_flags_api, latin_hypercube_2D_close_api from silhs_api_module. 2025-05-01 15:13:38 -05003a3e3d57af0db172255568b51e92976571b7ad42Removed renaming operators `=>` and wrapper subroutines from silhs_api_module (#1240)editsrc/pdf_hydromet_microphys_wrapper.F90editsrc/SILHS/parameters_silhs.F90editsrc/estimate_scm_microphys_module.F90editsrc/SILHS/est_kessler_microphys_module.F90editsrc/lh_microphys_driver_module.F90editsrc/microphys_init_cleanup.F90editsrc/SILHS/silhs_api_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/SILHS/lh_microphys_var_covar_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/clubb_standalone.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_driver.F90src/time_dependent_input.F90src/CLUBB_core/grid_class.F90src/advance_microphys_module.F90src/CLUBB_core/mono_flux_limiter.F90run_scripts/run_scm_all.bashsrc/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_xp2_xpyp_module.F901e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f01746207443000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun scm fixes (#1244) Fixed error output for run?scm?all.bash, added some missing error checks to CLUBB CLUBB ticket #975 * Fixed error output issues for run_scm_all.bash - Changed tail $TMP_OUT to cat $TMP_OUT so we can see the entire stderr output of CLUBB in the log - Added `if allocated` check to subroutine finalize_t_dependent_forcings in time_dependent_input.F90 to avoid runtime errors - Removed unnecessary write statement in clubb_standalone.F90 * Added missing err_code checks - Added err_code checks so we don't get false negative error messages 2025-05-02 12:37:23 -05001e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f0Run scm fixes (#1244)editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/clubb_standalone.F90editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editrun_scripts/run_scm_all.basheditsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/time_dependent_input.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/mono_flux_limiter.F90run_scripts/run_bindiff_w_flags_config_host_flags.json9b42183b3b368cf7c079faf0a7b79eefc159f9011746214523000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a new .json file for host model flags. Flag set 1 consists of the current CAM default settings. 2025-05-02 14:35:23 -05009b42183b3b368cf7c079faf0a7b79eefc159f901I am adding a new .json file for host model flags. Flag set 1 consistsaddrun_scripts/run_bindiff_w_flags_config_host_flags.jsonjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfiled1b42f244d4e38d86e5cf1bea3cbdb38950e094b1746220666000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a Jenkinsfile for a new CLUBB generalized vertical grid test that uses flag sets consisting of specialized flag settings that are found in host models of which CLUBB is a part. 2025-05-02 16:17:46 -0500d1b42f244d4e38d86e5cf1bea3cbdb38950e094bI am adding a Jenkinsfile for a new CLUBB generalized verticaladdjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfilerun_scripts/run_bindiff_w_flags_config_host_flags.jsonf1b430ab343e05a36e916cf1910c78c1a20c177b1746222050000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding a second set of host flags as part of the generalized vertical grid test for host model flags. Flag set 2 consists of flag settings that are found in the clubb_silhs_devel branch of CAM. 2025-05-02 16:40:50 -0500f1b430ab343e05a36e916cf1910c78c1a20c177bI am adding a second set of host flags as part of the generalizededitrun_scripts/run_bindiff_w_flags_config_host_flags.jsonrun_scripts/run_bindiff_w_flags_config_host_flags.json6912ae1620711773f96385ece3b9330fc73daf681746222283000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFixing an error in the previous commit. (lol, good ol' find and replace) 2025-05-02 16:44:43 -05006912ae1620711773f96385ece3b9330fc73daf68Fixing an error in the previous commit. (lol, good ol' find and replace)editrun_scripts/run_bindiff_w_flags_config_host_flags.jsonsrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/mixing_length.F90b7e8ad326ddae6128dfc222922dc10c1a82757001746549263000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduCleaning up some grid generalization issues that were found within l_implemented flag blocks. 2025-05-06 11:34:23 -0500b7e8ad326ddae6128dfc222922dc10c1a8275700Cleaning up some grid generalization issues that were found withineditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/mixing_length.F90src/CLUBB_core/lapack_wrap.F901f2fc1fc313f86736c95e12472ed0d9886a9c46c1746812441000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed and equalized NaN checks in lapack_wrap (#1246) See CAM pull request larson-group/CAM#188 Added debug_level_at_least(0) checks where missing and changed debug_level(1) to 0 in lapack_band_solve, so the new CAM CLUBB error handling test can do what it's supposed to do. 2025-05-09 12:40:41 -05001f2fc1fc313f86736c95e12472ed0d9886a9c46cFixed and equalized NaN checks in lapack_wrap (#1246)editsrc/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/pdf_closure_module.F90src/Benchmark_cases/atex.F90src/CLUBB_core/pdf_parameter_module.F90src/CLUBB_core/sfc_varnce_module.F90src/CLUBB_core/sponge_layer_damping.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/stats_type_utilities.F90src/CLUBB_core/error_code.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/output_netcdf.F90src/CLUBB_core/model_flags.F90src/time_dependent_input.F90src/advance_microphys_module.F90src/G_unit_test_types/pdf_parameter_tests.F90src/bugsrad_driver.F90src/SILHS/silhs_importance_sample_module.F90src/CLUBB_core/matrix_operations.F90src/generalized_grid_test.F90src/SILHS/latin_hypercube_driver_module.F90src/CLUBB_core/clip_explicit.F90src/Benchmark_cases/nov11.F90src/microphys_init_cleanup.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/matrix_solver_wrapper.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/calendar.F90src/CLUBB_core/pos_definite_module.F90src/CLUBB_core/diagnose_correlations_module.F90src/CLUBB_core/interpolation.F90src/lh_microphys_driver_module.F90src/BUGSrad/two_rt_sw.Fsrc/CLUBB_core/grid_adaptation.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/hydromet_pdf_parameter_module.F90src/CLUBB_core/output_grads.F90src/BUGSrad/two_rt_lw.Fsrc/G_unit_test_types/spurious_source_test.F90src/cos_solar_zen_module.F90src/CLUBB_core/numerical_check.F90src/Benchmark_cases/mpace_a.F90src/CLUBB_core/precipitation_fraction.F90src/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_clubb_core_module.F90src/jacobian.F90src/clubb_driver.F90src/morrison_microphys_module.F90src/simple_rad_module.F90src/sounding.F90src/CLUBB_core/corr_varnce_module.F90src/CLUBB_core/fill_holes.F90src/error.F90src/pdf_hydromet_microphys_wrapper.F90src/coamps_microphys_driver_module.F90942e02ac28ca0981f9a54f4e56d8fc8a16b49b651747158959000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved simple wrappers from clubb_api_module (#1245) * Removed simple wrappers from clubb_api_module CLUBB ticket #1223 Removed wrappers and renamed procedures in original modules: - cleanup_clubb_core_api - compute_current_date_api - set_clubb_debug_level_api - clubb_at_least_debug_level_api - lin_interpolate_on_grid_api - pack_pdf_params_api - unpack_pdf_params_api - init_precip_fracs_api - init_pdf_implicit_coefs_terms_api - stats_end_timestep_api - print_clubb_config_flags_api - initialize_tau_sponge_damp_api - finalize_tau_sponge_damp_api 2025-05-13 12:55:59 -0500942e02ac28ca0981f9a54f4e56d8fc8a16b49b65Removed simple wrappers from clubb_api_module (#1245)editsrc/CLUBB_core/interpolation.F90editsrc/CLUBB_core/sponge_layer_damping.F90editsrc/CLUBB_core/grid_adaptation.F90editsrc/time_dependent_input.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/diagnose_correlations_module.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/output_grads.F90editsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/matrix_solver_wrapper.F90editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/Benchmark_cases/nov11.F90editsrc/CLUBB_core/calendar.F90editsrc/CLUBB_core/mixing_length.F90editsrc/BUGSrad/two_rt_lw.Feditsrc/Benchmark_cases/mpace_a.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/hydromet_pdf_parameter_module.F90editsrc/CLUBB_core/output_netcdf.F90editsrc/SILHS/silhs_importance_sample_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/cos_solar_zen_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/coamps_microphys_driver_module.F90editsrc/CLUBB_core/precipitation_fraction.F90editsrc/sounding.F90editsrc/lh_microphys_driver_module.F90editsrc/clubb_driver.F90editsrc/morrison_microphys_module.F90editsrc/error.F90editsrc/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/matrix_operations.F90editsrc/CLUBB_core/stats_type_utilities.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/jacobian.F90editsrc/CLUBB_core/error_code.F90editsrc/CLUBB_core/pos_definite_module.F90editsrc/CLUBB_core/sfc_varnce_module.F90editsrc/Benchmark_cases/atex.F90editsrc/CLUBB_core/lapack_wrap.F90editsrc/simple_rad_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/microphys_init_cleanup.F90editsrc/CLUBB_core/corr_varnce_module.F90editsrc/generalized_grid_test.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/BUGSrad/two_rt_sw.Feditsrc/CLUBB_core/model_flags.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/CLUBB_core/fill_holes.F90editsrc/bugsrad_driver.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/pdf_parameter_module.F90jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfilef9b793fc2d666ae40a33e3e574558b6ea39c78d31747245977000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix jenkins clubb error handling output (#1247) * Modified CLUBB error handling Jenkins test similar to changes in new CAM CLUBB test CAM pull request larson-group/cam#195 Changes to Jenkinsfile for clubb_error_handling_gfortran_test so output is cleaner and more descriptive. 2025-05-14 13:06:17 -0500f9b793fc2d666ae40a33e3e574558b6ea39c78d3Fix jenkins clubb error handling output (#1247)editjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfilerun_scripts/run_bindiff_w_flags_config_host_flags.json6011fadbf84bd9e26f1105695ab4e40d72ae3f711747434289000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI updated run_bindiff_w_flags_config_host_flags to add flag set 3, which, from what I can tell, contains the default CLUBB flag settings for E3SM in the maint-3.0 branch. 2025-05-16 17:24:49 -05006011fadbf84bd9e26f1105695ab4e40d72ae3f71I updated run_bindiff_w_flags_config_host_flags to add flag set 3,editrun_scripts/run_bindiff_w_flags_config_host_flags.jsonrun_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_scm_all.bashjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfilejenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilec379fef293da5e06976bee216437ffdc1b396f261747711812000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am adding pass/fail statements specific to the generalized grid test to the code. 2025-05-19 22:30:12 -0500c379fef293da5e06976bee216437ffdc1b396f26I am adding pass/fail statements specific to the generalized grid testeditrun_scripts/run_scm_all.basheditjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfileeditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileeditrun_scripts/run_clubb_w_varying_flags.pyjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileec0644cf80b501f02e9f43a32d39c9aeb784d6691747714302000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduFor the long-duration clubb_generalized_vertical_grid_test, I am shortening the duration of the MC3E runs to half their normal number of timesteps in order to cut down on the time it takes to do the run. 2025-05-19 23:11:42 -0500ec0644cf80b501f02e9f43a32d39c9aeb784d669For the long-duration clubb_generalized_vertical_grid_test, I ameditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilesrc/CLUBB_core/advance_xm_wpxp_module.F90b5929aa672244c4324f925e9c05fb2eb39baa1be1747720486000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduzm and zt were mixed up in the error prints argument list. 2025-05-20 00:54:46 -0500b5929aa672244c4324f925e9c05fb2eb39baa1bezm and zt were mixed up in the error prints argument list.editsrc/CLUBB_core/advance_xm_wpxp_module.F90input/grid/dycore_e3sm.grdsrc/CLUBB_core/interpolation.F90input/grid/dycore.grdsrc/Benchmark_cases/atex.F90input/stats/all_stats.inpostprocessing/pyplotgen/src/ContourPanel.pysrc/CLUBB_core/grid_adaptation.F90src/CLUBB_core/stats_zm_module.F90src/CLUBB_core/constants_clubb.F90src/CLUBB_core/output_netcdf.F90src/CLUBB_core/model_flags.F90postprocessing/grid_plot.pysrc/clubb_driver.F90src/time_dependent_input.F90src/CLUBB_core/stats_clubb_utilities.F90postprocessing/create_grid_adaptation_plot.pysrc/CLUBB_core/remapping.F90input/grid/gr_min.grdsrc/CLUBB_core/stats_variables.F9025d5bed515ab3d6e11e43419ef1fc3a71777e5451747866722000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMerge grid adaptation implementation (#1249) * add tunable parameter interp_from_dycore_grid_method * add dycore interpolation to atex case with conservative remapping by ullrich * remove new gpu commands * add acc annotation for gpu * remove acc annotation again * add acc annotation for parallel loop * add acc annotations for parallel loop execution * change remapping subroutine to take number of levels and levels as input instead of whole grid object * add more general functions to interpolate * add and refactor functions for remapping values given on zm levels * fix compiler errors and refactoring to stay under 100 chars per line * remove TODOs and used new interpolating function in interpolate_forcings * add functions for adaptive grid generation and grid density function normalization * add conservative ullrich remapping to cases with forcing time dependent inputs * add grid adaptation and flag * clean up and add warning for case when remapping from dycore flag cannot be used * some refactoring * add logical flag for dycore and renamed flags for dycore and grid adaptation * remove ifdefs * refactoring * add units * changed Lscale to inverse * add write to file for grid adaptation (still WIP) * clean up * change parameter for grid adaptation and add file and plot script for grid adaptation * add script for animation * add e3sm dycore grid * refactoring for efficiency * small fix for grid adapt plot script * add new grid adaptation method with prescribed minimum density profile * fix call to setup_grid * add gabls2 case * add refinement criterion and adaptation trigger * small fix and add minimum grid density profile to animation * add grid density to pyplots * add general refinement criteria for astex and gabls2 case (and arm) * update create_evenly_grid script * unfinished save * WIP: save progress * save working configuration * save working config without Lscale * save working config wo the use of Lscale * change call to map1_ppm to use correct iv parameter and order 4 * save code for results in thesis * add code for results * refactor remapping module for grid adaptation * add list of functions/subroutines to remapping module * adjust use statements * add model files for arm, astex and gabls2 * refactor grid_adaptation module * refactor and adjust tim stopping in clubb_driver * clean up * clean up * add grids * add scripts * add changes made to pyplotgen to generate plots for paper * add configurable model flags file that was used to obtain results * clean up and save tunable parameters file * fix error * fix error * add grid adapt output for debug level 2 * change dycore grid * add plot generation script for paper plots * add small changes * add normalization explaination plot to paper plots script * fix plot * clean up for stats output * add comment * fix use of clubb_at_least_debug_api * small deallocation fix * fix merge problems * revert changes made to test grid adaptation * revert tunable_parameters for Lscale * revert changes made to create plots for grid adaptation * add new line * add new line * revert changes * revert changes made to generate grid adaptation plots 2025-05-21 17:32:02 -050025d5bed515ab3d6e11e43419ef1fc3a71777e545Merge grid adaptation implementation (#1249)editsrc/CLUBB_core/constants_clubb.F90editsrc/CLUBB_core/stats_clubb_utilities.F90addinput/grid/dycore_e3sm.grdeditsrc/CLUBB_core/model_flags.F90editsrc/CLUBB_core/stats_variables.F90editsrc/Benchmark_cases/atex.F90editsrc/CLUBB_core/stats_zm_module.F90addinput/grid/gr_min.grdaddsrc/CLUBB_core/remapping.F90editsrc/CLUBB_core/output_netcdf.F90addpostprocessing/grid_plot.pyeditpostprocessing/pyplotgen/src/ContourPanel.pyeditsrc/clubb_driver.F90editsrc/CLUBB_core/interpolation.F90editsrc/time_dependent_input.F90addinput/grid/dycore.grdeditsrc/CLUBB_core/grid_adaptation.F90editinput/stats/all_stats.inaddpostprocessing/create_grid_adaptation_plot.pysrc/generalized_grid_test.F90ab83782970ee2389c03e0b387abc35b6452418bc1747931098000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI start adding some notes on grid generalization. 2025-05-22 11:24:58 -0500ab83782970ee2389c03e0b387abc35b6452418bcI start adding some notes on grid generalization.editsrc/generalized_grid_test.F90src/CLUBB_core/output_netcdf.F90src/Benchmark_cases/atex.F9001cd6d52d06689c704a7dc1b8239f1a6a82db2371747955296000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comfix precision error of reals 2025-05-22 18:08:16 -050001cd6d52d06689c704a7dc1b8239f1a6a82db237fix precision error of realseditsrc/CLUBB_core/output_netcdf.F90editsrc/Benchmark_cases/atex.F90githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/sdomkeSteffen Domkehttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse396http://carson.math.uwm.edu/jenkins/view/Branch%20View/job/branch_clubb_test/396/394http://carson.math.uwm.edu/jenkins/view/Branch%20View/job/branch_clubb_test/394/