Started by user <a href='/jenkins/user/sdomke' class='jenkins-table__link model-link model-link--float'>Steffen Domke</a>
Checking out git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile
The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
Cleaning workspace
 &gt; git rev-parse --verify HEAD # timeout=10
Resetting working tree
 &gt; git reset --hard # timeout=10
 &gt; git clean -ffdx # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10
Checking out Revision a927f21c80fc691c88bf0a9d978089c83845d487 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f a927f21c80fc691c88bf0a9d978089c83845d487 # timeout=10
Commit message: "Update cam_test_fatal_error_handling.bash"
 &gt; git rev-list --no-walk d9c4a079be61e2441fb00b3ca0776c75df0abc59 # timeout=10
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/branch_cam_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
Cleaning workspace
 &gt; git rev-parse --verify HEAD # timeout=10
Resetting working tree
 &gt; git reset --hard # timeout=10
 &gt; git clean -ffdx # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10
Checking out Revision a927f21c80fc691c88bf0a9d978089c83845d487 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f a927f21c80fc691c88bf0a9d978089c83845d487 # timeout=10
Commit message: "Update cam_test_fatal_error_handling.bash"
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Externals and Copy Custom Files">[Pipeline] { (Checkout Externals and Copy Custom Files)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Sed Commands">[Pipeline] { (Sed Commands)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span><span class="pipeline-new-node" nodeId="24" enclosingId="23">[Pipeline] sh
</span><span class="pipeline-node-24">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="25">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="27" enclosingId="26">[Pipeline] sh
</span><span class="pipeline-node-27">+ rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ARM97
</span><span class="pipeline-new-node" nodeId="28" startId="26">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="29" startId="25">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="30" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="31" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="32" startId="32" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="33" startId="33" enclosingId="32" label="Run test script">[Pipeline] { (Run test script)
</span><span class="pipeline-new-node" nodeId="34" startId="34" enclosingId="33">[Pipeline] dir
</span><span class="pipeline-node-34">Running in /home/jenkins/workspace/branch_cam_test/jenkins_tests/cam_clubb_error_handling_test
</span><span class="pipeline-new-node" nodeId="35" startId="35" enclosingId="34">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="36" enclosingId="35">[Pipeline] sh
</span><span class="pipeline-node-36">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ./cam_test_fatal_error_handling.bash
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-840-ga927f21c
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-08 15:08:36 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:08:36 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:08:37 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:08:37 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:08:37 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:08:37 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:08:37 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:08:37 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:08:37 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250508-150836
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 2 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250508-150836
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250508-150836
   Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share
Component csm_share build complete with 28 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250508-150836
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250508-150836
Component lnd build complete with 4 warnings
clm built in 55.014470 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250508-150836
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250508-150836
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250508-150836
docn built in 0.858994 seconds
cice built in 86.064230 seconds
Component atm build complete with 110 warnings
cam built in 90.505106 seconds
Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250508-150836 
Total build time: 232.444695 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-08 15:12:29 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:12:29 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:12:29 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:12:29 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:12:30 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:12:30 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:12:30 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:12:30 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:12:30 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
  2025-05-08 15:12:30 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:12:31 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:12:31 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:12:31 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:12:31 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:12:31 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:12:31 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:12:31 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:12:31 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
Exception from case_run: ERROR: RUN FAIL: Command 'mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1 ' failed
See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250508-151230
Submitted job case.run with id None
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-840-ga927f21c
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-08 15:12:43 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:12:44 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:12:44 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:12:44 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:12:44 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:12:44 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:12:44 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:12:44 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:12:44 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250508-151243
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 2 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250508-151243
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250508-151243
   Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share
Component csm_share build complete with 28 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250508-151243
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250508-151243
Component lnd build complete with 4 warnings
clm built in 54.247488 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250508-151243
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250508-151243
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250508-151243
docn built in 0.825609 seconds
cice built in 86.065202 seconds
Component atm build complete with 110 warnings
cam built in 89.534800 seconds
Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250508-151243 
Total build time: 231.357370 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-08 15:16:35 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:16:35 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:16:36 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:16:36 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:16:36 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:16:36 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:16:36 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:16:36 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:16:36 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX
  2025-05-08 15:16:37 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-08 15:16:37 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-08 15:16:37 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml
  2025-05-08 15:16:37 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-08 15:16:37 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-08 15:16:37 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-08 15:16:37 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-08 15:16:37 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-08 15:16:37 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
Exception from case_run: ERROR: RUN FAIL: Command 'mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1 ' failed
See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250508-151636
Submitted job case.run with id None
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="37" startId="35">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="38" startId="34">[Pipeline] // dir
</span><span class="pipeline-new-node" nodeId="39" startId="33">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="40" startId="32">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="41" startId="41" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="42" startId="42" enclosingId="41" label="Check for wp2 NaN error from advance_wp2_wp3">[Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3)
</span><span class="pipeline-new-node" nodeId="43" enclosingId="42">[Pipeline] sh
</span><span class="pipeline-node-43">+ grep 'Error calling advance_wp2_wp3' run_scripts/advance_wp2_wp3_bad_wp2
 Error calling advance_wp2_wp3 in advance_clubb_core
</span><span class="pipeline-new-node" nodeId="44" startId="42">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="45" startId="41">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="46" startId="46" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="47" startId="47" enclosingId="46" label="Check for wp2 NaN error from advance_wm_wpxp">[Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp)
</span><span class="pipeline-new-node" nodeId="48" enclosingId="47">[Pipeline] sh
</span><span class="pipeline-node-48">+ grep 'Error calling advance_xm_wpxp' run_scripts/advance_xm_wpxp_bad_wp2
 Error calling advance_xm_wpxp in advance_clubb_core
</span><span class="pipeline-new-node" nodeId="49" startId="47">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="50" startId="46">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="51" startId="51" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="52" startId="52" enclosingId="51" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="53" startId="53" enclosingId="52">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="54" startId="54" enclosingId="53">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="55" startId="54">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="56" startId="53">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="57" startId="52">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="58" startId="51">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="59" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="60" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="61" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="62" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="63" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS