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(Gunther confirmed that code change is the only thing that changes answers.) 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The bug is only exposed when using multiple threads, and this is a workaround, we should still remove the grid setup functionality from setup_clubb_core. I wasn't able to get the run to finish since cam also crashes with multiple threads due to clubb stats, but it get passed the grid allocation thread error.\u000a", "date" : "2022-03-15 18:56:49 -0500", "id" : "fa55d35e38ee47d9e0c2d85e0105d0830c74fee3", "msg" : "This should fix the problem Kate is experiencing. The bug is only exposed when using multiple threads, and this is a workaround, we should still remove the grid setup functionality from setup_clubb_core. I wasn't able to get the run to finish since cam also crashes with multiple threads due to clubb stats, but it get passed the grid allocation thread error.", "paths" : [ { "editType" : "edit", "file" : "src/physics/cam/clubb_intr.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "6216b8e6e638a0862df4c9ccde780c0de21dc484", "timestamp" : 1647434771000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Removes a blank line in order to trigger merge with E3SM\u000a", "date" : "2022-03-16 07:46:11 -0500", "id" : "6216b8e6e638a0862df4c9ccde780c0de21dc484", "msg" : "Removes a blank line in order to trigger merge with E3SM", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "mono_flux_limiter.F90" ], "commitId" : "e71c3c281fdec86134cae0107f02f9eefd7a6edd", "timestamp" : 1647461903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Pushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. This essentially completes advance_xm_wpxp for now. larson-group/clubb#972\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "e71c3c281fdec86134cae0107f02f9eefd7a6edd", "msg" : "Pushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. 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This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats.\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "548c0002fa64ad11e86a754012f61a0b1fb7ef52", "msg" : "Moving the lhs_dp1 calculation to outside of xp2_xpyp_lhs. This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "b042151c9b68a3625a5ed0716f92daca6fd56b6f", "timestamp" : 1647461903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Moving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call.\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "b042151c9b68a3625a5ed0716f92daca6fd56b6f", "msg" : "Moving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "8c8f3fa1d2bbf4c47cc00e8c15eb63354ac4ba41", "timestamp" : 1647461903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Removing need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way.\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "8c8f3fa1d2bbf4c47cc00e8c15eb63354ac4ba41", "msg" : "Removing need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "d2b10e704a1f3896db7b05eab3249c1db38f2754", "timestamp" : 1647461903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Adding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn.\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "d2b10e704a1f3896db7b05eab3249c1db38f2754", "msg" : "Adding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "ecf272020b8de2182a362ed7eca489443cdcbb94", "timestamp" : 1647461903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Changing names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp.\u000a", "date" : "2022-03-16 15:18:23 -0500", "id" : "ecf272020b8de2182a362ed7eca489443cdcbb94", "msg" : "Changing names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh" ], "commitId" : "c706ce3fecc70fc1805599a6cbe77b4b839ac3d2", "timestamp" : 1647539163000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "RESOLVED:7cdd1f8a1e444a6a01168c331f18419d67527785 the differences commit 7cdd1f8 caused were from moving the xp2_xpyp_implicit_stats into the solve routines in advance_xp2_xpyp. This is because the stats scratch variables (that have been removed) were causing us to save the rtpthlp version of lhs_dp1 into the rtp2 and thlp2, but now we are saving the correct ones. I've confirmed that the only differences in the output are rtp2_dp1 and thlp2_dp1. This problem is not present when we solve with a single lhs, but the backwards compatible flag set forces us into the solve with multiple, so the other test did not detect any bit changes.\u000a", "date" : "2022-03-17 12:46:03 -0500", "id" : "c706ce3fecc70fc1805599a6cbe77b4b839ac3d2", "msg" : "RESOLVED:7cdd1f8a1e444a6a01168c331f18419d67527785 the differences commit 7cdd1f8 caused were from moving the xp2_xpyp_implicit_stats into the solve routines in advance_xp2_xpyp. This is because the stats scratch variables (that have been removed) were causing us to save the rtpthlp version of lhs_dp1 into the rtp2 and thlp2, but now we are saving the correct ones. I've confirmed that the only differences in the output are rtp2_dp1 and thlp2_dp1. This problem is not present when we solve with a single lhs, but the backwards compatible flag set forces us into the solve with multiple, so the other test did not detect any bit changes.", "paths" : [ { "editType" : "edit", "file" : "run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "2d1a62e415c2203ea43159b80f23d66b062d785d", "timestamp" : 1648248221000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added l_relax_clipping to CLUBB's config flags.\u000a", "date" : "2022-03-25 17:43:41 -0500", "id" : "2d1a62e415c2203ea43159b80f23d66b062d785d", "msg" : "I added l_relax_clipping to CLUBB's config flags.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/physics/cam/clubb_intr.F90" ], "commitId" : "0c2f6daef1c45189e2441590bf69a81e9bac0c8d", "timestamp" : 1648252846000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Added l_enable_relaxed_clipping to the CAM-CLUBB code.\u000a", "date" : "2022-03-25 19:00:46 -0500", "id" : "0c2f6daef1c45189e2441590bf69a81e9bac0c8d", "msg" : "Added l_enable_relaxed_clipping to the CAM-CLUBB code.", "paths" : [ { "editType" : "edit", "file" : "src/physics/cam/clubb_intr.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "clubb_api_module.F90" ], "commitId" : "36dbc89e7df189d2910e3b3fc2d3bbe5a4084149", "timestamp" : 1648591498000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Added a3_coef_min to the list of CLUBB's tunable parameter and then\u000acommented-in the a3_coef clipping line found in advance_clubb_core.F90.\u000a\u000aThe results of this revision are bit-for-bit.\u000a", "date" : "2022-03-29 17:04:58 -0500", "id" : "36dbc89e7df189d2910e3b3fc2d3bbe5a4084149", "msg" : "Added a3_coef_min to the list of CLUBB's tunable parameter and then", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/physics/cam/clubb_intr.F90" ], "commitId" : "9913e3e2ae8482e144c75ee9a90a2fa7f542bee7", "timestamp" : 1648594033000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added CLUBB's new tunable parameter a3_coef_min to the CAM-CLUBB code.\u000a", "date" : "2022-03-29 17:47:13 -0500", "id" : "9913e3e2ae8482e144c75ee9a90a2fa7f542bee7", "msg" : "I added CLUBB's new tunable parameter a3_coef_min to the CAM-CLUBB code.", "paths" : [ { "editType" : "edit", "file" : "src/physics/cam/clubb_intr.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "jenkins_tests/camClubbCodeCopy/camClubbCodeCopy.bash" ], "commitId" : "2208bcbd00262f7688841553bc7e4a9d7bb6cd8f", "timestamp" : 1648762563000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/pbroels", "fullName" : "pbroels" }, "authorEmail" : "pbroels@uwm.edu", "comment" : "Adding camClubbCodeCopy.bash to the jenkins directory for testing Clubb changes. larson-group/sys_admin#768\u000a", "date" : "2022-03-31 16:36:03 -0500", "id" : "2208bcbd00262f7688841553bc7e4a9d7bb6cd8f", "msg" : "Adding camClubbCodeCopy.bash to the jenkins directory for testing Clubb changes. larson-group/sys_admin#768", "paths" : [ { "editType" : "add", "file" : "jenkins_tests/camClubbCodeCopy/camClubbCodeCopy.bash" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "ccb8a9a9a67b277371197b3aadf8aa9cc03fb086", "timestamp" : 1649199568000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Added idiot-proofing to print a warning message when l_diag_Lscale_from_tau\u000ais being used and C1, C1b, C2rt, C2thl, C2rtthl, C6rt, C6rtb, C6thl, C6thlb,\u000aor C14 do not have a value 1. 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