Started by user Gunther Huebler
Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_ne5_gpu_test/Jenkinsfile
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/ticket_1152^{commit} # timeout=10
Checking out Revision c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d (refs/remotes/origin/ticket_1152)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d # timeout=10
Commit message: "remove radf from function call to CLUBB"
First time build. Skipping changelog.
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/branch_cam_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -ffdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/ticket_1152^{commit} # timeout=10
Checking out Revision c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d (refs/remotes/origin/ticket_1152)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d # timeout=10
Commit message: "remove radf from function call to CLUBB"
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_cam_coarse_res.py .
Sending interrupt signal to process
Aborted by Gunther Huebler
ERROR:root:Command '['git', 'clone', '--quiet', 'https://github.com/ESCOMP/CHEM_PREPROCESSOR.git', '/home/jenkins/workspace/branch_cam_test/chem_proc']' returned non-zero exit status 128.
ERROR:root:Failed with output:
    error: git-remote-https died of signal 15
    fetch-pack: unexpected disconnect while reading sideband packet
    fatal: early EOF
    fatal: fetch-pack: invalid index-pack output

ERROR: In directory
    /home/jenkins/workspace/branch_cam_test
Process did not run successfully; returned status 128:
    git clone --quiet https://github.com/ESCOMP/CHEM_PREPROCESSOR.git /home/jenkins/workspace/branch_cam_test/chem_proc
See above for output from failed command.

ERROR:root:Failed with output:
    error: git-remote-https died of signal 15
    fetch-pack: unexpected disconnect while reading sideband packet
    fatal: early EOF
    fatal: fetch-pack: invalid index-pack output

ERROR: In directory
    /home/jenkins/workspace/branch_cam_test
Process did not run successfully; returned status 128:
    git clone --quiet https://github.com/ESCOMP/CHEM_PREPROCESSOR.git /home/jenkins/workspace/branch_cam_test/chem_proc
See above for output from failed command.

Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Running ne5 with OpenACC)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh
----- Case Setup -----
run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh: line 37: cd: /home/jenkins/workspace/branch_cam_test/cime/scripts: No such file or directory
run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh: line 38: ./create_newcase: No such file or directory
Error creating new case
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were compressed, this indicates a failure.
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: ABORTED