Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Checking out git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_ne5_gpu_test/Jenkinsfile
The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
Cleaning workspace
 &gt; git rev-parse --verify HEAD # timeout=10
Resetting working tree
 &gt; git reset --hard # timeout=10
 &gt; git clean -ffdx # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/ticket_1152^{commit} # timeout=10
Checking out Revision c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d (refs/remotes/origin/ticket_1152)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d # timeout=10
Commit message: "remove radf from function call to CLUBB"
First time build. Skipping changelog.
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/branch_cam_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
Cleaning workspace
 &gt; git rev-parse --verify HEAD # timeout=10
Resetting working tree
 &gt; git reset --hard # timeout=10
 &gt; git clean -ffdx # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/ticket_1152^{commit} # timeout=10
Checking out Revision c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d (refs/remotes/origin/ticket_1152)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f c6d300f25c70f3c87cdc3f4e3d8f4c031de3819d # timeout=10
Commit message: "remove radf from function call to CLUBB"
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Externals and Copy Custom Files">[Pipeline] { (Checkout Externals and Copy Custom Files)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ python run_scripts/set_up_cam_coarse_res.py .
Sending interrupt signal to process
</span>Aborted by <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
<span class="pipeline-node-14">ERROR:root:Command '['git', 'clone', '--quiet', '<a href='https://github.com/ESCOMP/CHEM_PREPROCESSOR.git'>https://github.com/ESCOMP/CHEM_PREPROCESSOR.git</a>', '/home/jenkins/workspace/branch_cam_test/chem_proc']' returned non-zero exit status 128.
ERROR:root:Failed with output:
    error: git-remote-https died of signal 15
    fetch-pack: unexpected disconnect while reading sideband packet
    fatal: early EOF
    fatal: fetch-pack: invalid index-pack output

ERROR: In directory
    /home/jenkins/workspace/branch_cam_test
Process did not run successfully; returned status 128:
    git clone --quiet <a href='https://github.com/ESCOMP/CHEM_PREPROCESSOR.git'>https://github.com/ESCOMP/CHEM_PREPROCESSOR.git</a> /home/jenkins/workspace/branch_cam_test/chem_proc
See above for output from failed command.

ERROR:root:Failed with output:
    error: git-remote-https died of signal 15
    fetch-pack: unexpected disconnect while reading sideband packet
    fatal: early EOF
    fatal: fetch-pack: invalid index-pack output

ERROR: In directory
    /home/jenkins/workspace/branch_cam_test
Process did not run successfully; returned status 128:
    git clone --quiet <a href='https://github.com/ESCOMP/CHEM_PREPROCESSOR.git'>https://github.com/ESCOMP/CHEM_PREPROCESSOR.git</a> /home/jenkins/workspace/branch_cam_test/chem_proc
See above for output from failed command.

Checking out externals...
Copying ccs_config files
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ rm -rf /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne5_gpu_no_stats_larson-group_nvhpc/
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Running ne5 with OpenACC">[Pipeline] { (Running ne5 with OpenACC)
</span><span class="pipeline-new-node" nodeId="24" enclosingId="23">[Pipeline] sh
</span><span class="pipeline-node-24">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh
----- Case Setup -----
run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh: line 37: cd: /home/jenkins/workspace/branch_cam_test/cime/scripts: No such file or directory
run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh: line 38: ./create_newcase: No such file or directory
Error creating new case
</span><span class="pipeline-new-node" nodeId="25" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="26" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="27" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="29" startId="29" enclosingId="28">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="30" startId="30" enclosingId="29">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="31" enclosingId="30">[Pipeline] sh
</span><span class="pipeline-node-31">+ chmod -R 755 /home/jenkins/cam_output/
</span><span class="pipeline-new-node" nodeId="32" enclosingId="30">[Pipeline] sh
</span><span class="pipeline-node-32">+ gzip -d '/home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/UWM_ne5_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="33" enclosingId="30">[Pipeline] echo
</span><span class="pipeline-node-33">Not all logs were compressed, this indicates a failure.
</span><span class="pipeline-new-node" nodeId="34" startId="30">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="35" startId="29">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="36" startId="28">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="37" startId="27">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="38" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="39" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="40" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="41" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="42" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: ABORTED