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Started by user Steffen Domke Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10 Checking out Revision a927f21c80fc691c88bf0a9d978089c83845d487 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test) > git config core.sparsecheckout # timeout=10 > git checkout -f a927f21c80fc691c88bf0a9d978089c83845d487 # timeout=10 Commit message: "Update cam_test_fatal_error_handling.bash" > git rev-list --no-walk d9c4a079be61e2441fb00b3ca0776c75df0abc59 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_cam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10 Checking out Revision a927f21c80fc691c88bf0a9d978089c83845d487 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test) > git config core.sparsecheckout # timeout=10 > git checkout -f a927f21c80fc691c88bf0a9d978089c83845d487 # timeout=10 Commit message: "Update cam_test_fatal_error_handling.bash" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] script [Pipeline] { [Pipeline] sh + rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ARM97 [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run test script) [Pipeline] dir Running in /home/jenkins/workspace/branch_cam_test/jenkins_tests/cam_clubb_error_handling_test [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ./cam_test_fatal_error_handling.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-840-ga927f21c Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-08 15:08:36 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:08:36 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:08:37 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:08:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:08:37 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:08:37 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:08:37 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:08:37 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:08:37 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250508-150836 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250508-150836 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250508-150836 Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250508-150836 Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250508-150836 Component lnd build complete with 4 warnings clm built in 55.014470 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250508-150836 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250508-150836 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250508-150836 docn built in 0.858994 seconds cice built in 86.064230 seconds Component atm build complete with 110 warnings cam built in 90.505106 seconds Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250508-150836 Total build time: 232.444695 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-08 15:12:29 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:12:29 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:12:29 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:12:29 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:12:30 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:12:30 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:12:30 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:12:30 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:12:30 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX 2025-05-08 15:12:30 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:12:31 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:12:31 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:12:31 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:12:31 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:12:31 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:12:31 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:12:31 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:12:31 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250508-151230 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-840-ga927f21c Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-08 15:12:43 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:12:44 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:12:44 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:12:44 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:12:44 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:12:44 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:12:44 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:12:44 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:12:44 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250508-151243 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250508-151243 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250508-151243 Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250508-151243 Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250508-151243 Component lnd build complete with 4 warnings clm built in 54.247488 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250508-151243 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250508-151243 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250508-151243 docn built in 0.825609 seconds cice built in 86.065202 seconds Component atm build complete with 110 warnings cam built in 89.534800 seconds Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250508-151243 Total build time: 231.357370 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-08 15:16:35 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:16:35 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:16:36 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:16:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:16:36 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:16:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:16:36 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:16:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:16:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX 2025-05-08 15:16:37 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-08 15:16:37 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-08 15:16:37 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-08 15:16:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-08 15:16:37 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-08 15:16:37 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-08 15:16:37 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-08 15:16:37 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-08 15:16:37 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250508-151636 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] sh + grep 'Error calling advance_wp2_wp3' run_scripts/advance_wp2_wp3_bad_wp2 Error calling advance_wp2_wp3 in advance_clubb_core [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] sh + grep 'Error calling advance_xm_wpxp' run_scripts/advance_xm_wpxp_bad_wp2 Error calling advance_xm_wpxp in advance_clubb_core [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS