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Started by GitHub push by domkesteffen Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 6654de29a1f573a0a6562d29393a4e18eeabd2ef (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 6654de29a1f573a0a6562d29393a4e18eeabd2ef # timeout=10 Commit message: "Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)" > git rev-list --no-walk 1a81400d8f997d9c9b3a128a4cf4a001dd849b3e # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gfortran: error: /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/array_index.F90: No such file or directory gfortran: fatal error: no input files compilation terminated. make[1]: *** [Make.clubb_param:36: array_index.o] Error 1 make[1]: *** Waiting for unfinished jobs.... Assembler messages: Fatal error: can't create parameters_model.o: No such file or directory make[1]: *** [Make.clubb_param:118: parameters_model.o] Error 1 Assembler messages: Fatal error: can't create lapack_interfaces.o: No such file or directory make[1]: *** [Make.clubb_param:82: lapack_interfaces.o] Error 1 Assembler messages: Fatal error: can't create model_flags.o: No such file or directory make[1]: *** [Make.clubb_param:94: model_flags.o] Error 1 make: *** [Makefile:14: libclubb_param.a] Error 2 make: *** Waiting for unfinished jobs.... Assembler messages: Fatal error: can't create aer_ccn_act_k.o: No such file or directory make[1]: *** [Make.clubb_gfdlact:11: aer_ccn_act_k.o] Error 1 make: *** [Makefile:38: libclubb_gfdlact.a] Error 2 mkdir: cannot create directory ‘repo/output’: No such file or directory =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 6654de29a1f573a0a6562d29393a4e18eeabd2ef Found: BIT_CHANGING Checking Commit: 6654de29a1f573a0a6562d29393a4e18eeabd2ef Checking out 1a81400d8f997d9c9b3a128a4cf4a001dd849b3e Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' ================== ERROR ================== Commit: 1a81400d8f997d9c9b3a128a4cf4a001dd849b3e Unexpected error: [Errno 2] No such file or directory: 'repo/run_scripts/run_scm_all.bash' There was a problem with a run command. =========================================== System Exit detected. Calling test.cleanup() =============================== Cleanup =============================== Removed repo. Removing all generated output Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE