Console Output

Started by user Gunther Huebler
Obtained jenkins_tests/cam_scam_ifort_ncar_debug_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.30.2'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision a9b3c322d65ee2f3351a84e841c2465d7499cec3 (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a9b3c322d65ee2f3351a84e841c2465d7499cec3 # timeout=10
Commit message: "Adding flags back in, they just needed a little name change to match the namelist definition."
 > git rev-list --no-walk a9b3c322d65ee2f3351a84e841c2465d7499cec3 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_cam_coarse_res.py .
Aborted by Gunther Huebler
Sending interrupt signal to process
ERROR:root:Command '['git', 'clone', '--quiet', 'https://github.com/MPAS-Dev/MPAS-Model.git', '/home/jenkins/workspace/cam_scam_ifort_ncar_debug_test/src/dynamics/mpas/dycore']' died with <Signals.SIGPIPE: 13>.
ERROR:root:Failed with output:
    error: index-pack died of signal 15
    fatal: index-pack failed

ERROR: In directory
    /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test/src/dynamics/fv3/atmos_cubed_sphere
Process did not run successfully; returned status -13:
    git clone --quiet https://github.com/MPAS-Dev/MPAS-Model.git /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test/src/dynamics/mpas/dycore
See above for output from failed command.

ERROR:root:Failed with output:
    error: index-pack died of signal 15
    fatal: index-pack failed

ERROR: In directory
    /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test/src/dynamics/fv3/atmos_cubed_sphere
Process did not run successfully; returned status -13:
    git clone --quiet https://github.com/MPAS-Dev/MPAS-Model.git /home/jenkins/workspace/cam_scam_ifort_ncar_debug_test/src/dynamics/mpas/dycore
See above for output from failed command.

Checking out externals...
Copying cime config files
Terminated
script returned exit code 143
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Sed Commands)
Stage "Sed Commands" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
Stage "Remove Old Output" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run atex)
Stage "Run atex" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run arm97 with SILHS)
Stage "Run arm97 with SILHS" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for atex.
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for arm97.
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: ABORTED