Started by user Gunther Huebler Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script to read jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/quick_test^{commit} # timeout=10 Checking out Revision 6fd6cb60752591b463ac7a930238dffbd546a96a (refs/remotes/origin/quick_test) > git config core.sparsecheckout # timeout=10 > git checkout -f 6fd6cb60752591b463ac7a930238dffbd546a96a # timeout=10 Commit message: "quick_test agdgh" > git rev-list --no-walk ac5d6f0f086c595c3c196a0414acedf24ec9a244 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/quick_test^{commit} # timeout=10 Checking out Revision 6fd6cb60752591b463ac7a930238dffbd546a96a (refs/remotes/origin/quick_test) > git config core.sparsecheckout # timeout=10 > git checkout -f 6fd6cb60752591b463ac7a930238dffbd546a96a # timeout=10 Commit message: "quick_test agdgh" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init + git submodule update [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/E3SM_simulations [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + csh nightly_test/nightly_e3sm_ne4_silhs.csh run_e3sm: ++++++++ run_e3sm starting (Thu Feb 3 15:04:57 CST 2022), version 3.0.22 ++++++++ run_e3sm: $case_name = nelson.mg2_def.ne4_ne4 run_e3sm: -------- Starting create_newcase -------- run_e3sm: /home/jenkins/workspace/branch_e3sm_test//cime/scripts/create_newcase --case nelson.mg2_def.ne4_ne4 --compset FC5AV1C-L --script-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts --res ne4_ne4 --pecount M --handle-preexisting-dirs u --mach nelson --output-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 --project condo Compset longname is 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is Com forcing is present day: ATM component is cam5 physics:CAM with complete set of E3SM atmospheric mods for V1 (72 layers model) and ACES4BGC SOAG emissions- v04p2: LND component is clm4.5 physics:clm4.5 Satellite phenology:clm4.5 Satellite phenology with black carbon deposition: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_ICE': 16, 'NTASKS_CPL': 16, 'NTASKS_LND': 16, 'NTASKS_WAV': 16, 'NTASKS_ROF': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: 6fd6cb6 Batch_system_type is none Creating Case directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts run_e3sm: -------- Finished create_newcase -------- run_e3sm: Project used for submission: condo run_e3sm: Configuring E3SM to use the COSP simulator. run_e3sm: -------- Starting case.setup -------- run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.setup /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2022-02-03 15:05:06 atm Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml 2022-02-03 15:05:06 lnd Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml 2022-02-03 15:05:07 ice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-02-03 15:05:07 ocn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml 2022-02-03 15:05:07 rof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2022-02-03 15:05:07 glc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2022-02-03 15:05:07 wav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2022-02-03 15:05:07 iac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2022-02-03 15:05:07 esp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2022-02-03 15:05:07 cpl Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run run_e3sm: -------- Finished case.setup -------- run_e3sm: Creating logical links to make navigating easier. run_e3sm: Note: Beware of using ".." with the links, since the behavior of shell commands can vary. run_e3sm: /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link run_e3sm: run_root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 run_e3sm: run_dir /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link setting case file to env_run.xml run_e3sm: -------- Starting Build -------- run_e3sm: WARNING: Make sure there are no double-slashes (//) in the build command below: => Will cause a build error run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.build Building case in directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2022-02-03 15:05:08 atm Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml 2022-02-03 15:05:08 lnd Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml 2022-02-03 15:05:08 ice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-02-03 15:05:09 ocn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml 2022-02-03 15:05:09 rof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2022-02-03 15:05:09 glc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2022-02-03 15:05:09 wav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2022-02-03 15:05:09 iac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2022-02-03 15:05:09 esp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2022-02-03 15:05:09 cpl Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gptl.bldlog.220203-150508 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/mct.bldlog.220203-150508 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/pio.bldlog.220203-150508 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/csm_share.bldlog.220203-150508 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm.bldlog.220203-150508 - Building lnd Library Building lnd with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd.bldlog.220203-150508 - Building ice Library Building ice with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice.bldlog.220203-150508 - Building ocn Library Building ocn with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn.bldlog.220203-150508 - Building rof Library - Building glc Library Building rof with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof.bldlog.220203-150508 Building glc with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc.bldlog.220203-150508 - Building wav Library Building wav with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav.bldlog.220203-150508 - Building iac Library Building iac with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac.bldlog.220203-150508 - Building esp Library Building esp with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp.bldlog.220203-150508 sesp built in 0.489827 seconds siac built in 0.500284 seconds srof built in 0.566447 seconds swav built in 0.587332 seconds sglc built in 0.601499 seconds docn built in 1.280792 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 23.106238 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 113.744784 seconds Component atm build complete with 15 warnings Component atm build complete with 15 warnings cam built in 123.032128 seconds Building e3sm with output to /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.220203-150508 Component e3sm exe build complete with 3 warnings Time spent not building: 1.030012 sec Time spent building: 176.295712 sec MODEL BUILD HAS FINISHED SUCCESSFULLY run_e3sm: -------- Finished Build -------- Creating component namelists 2022-02-03 15:08:05 atm Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml 2022-02-03 15:08:06 lnd Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml 2022-02-03 15:08:06 ice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-02-03 15:08:06 ocn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml 2022-02-03 15:08:06 rof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2022-02-03 15:08:06 glc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2022-02-03 15:08:06 wav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2022-02-03 15:08:06 iac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2022-02-03 15:08:06 esp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2022-02-03 15:08:06 cpl Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists run_e3sm: WARNING: This script does not have batch directives for $machine=nelson run_e3sm: Assuming default E3SM values. run_e3sm: condo not recognized as a group, results must be shared manually run_e3sm: $model_start_type = initial (This is NOT necessarily related to RUN_TYPE) run_e3sm: -------- Starting Submission to Run Queue -------- run_e3sm: SUBMITTING JOB: run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.submit Creating component namelists 2022-02-03 15:08:09 atm Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml 2022-02-03 15:08:09 lnd Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml 2022-02-03 15:08:10 ice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-02-03 15:08:10 ocn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml 2022-02-03 15:08:10 rof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2022-02-03 15:08:10 glc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2022-02-03 15:08:10 wav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2022-02-03 15:08:10 iac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2022-02-03 15:08:10 esp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2022-02-03 15:08:10 cpl Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2022-02-03 15:08:10 CASE.RUN BEGINS HERE 2022-02-03 15:08:10 RUN_MODEL BEGINS HERE 2022-02-03 15:08:10 PRE_RUN_CHECK BEGINS HERE 2022-02-03 15:08:10 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts Creating component namelists 2022-02-03 15:08:10 atm Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml 2022-02-03 15:08:10 lnd Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml 2022-02-03 15:08:11 ice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-02-03 15:08:11 ocn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml 2022-02-03 15:08:11 rof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2022-02-03 15:08:11 glc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2022-02-03 15:08:11 wav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2022-02-03 15:08:11 iac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2022-02-03 15:08:11 esp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2022-02-03 15:08:11 cpl Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2022-02-03 15:08:11 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2022-02-03 15:08:11 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe >> e3sm.log.$LID 2>&1 2022-02-03 15:08:11 SAVE_PRERUN_PROVENANCE BEGINS HERE 2022-02-03 15:08:11 SAVE_PRERUN_PROVENANCE HAS FINISHED 2022-02-03 15:08:11 MODEL EXECUTION BEGINS HERE 2022-02-03 15:08:52 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/e3sm.log.220203-150810 Submitted job case.run with id None run_e3sm: -------- Finished Submission to Run Queue -------- run_e3sm: ++++++++ run_e3sm Completed (Thu Feb 3 15:08:52 CST 2022) ++++++++ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Display log files) [Pipeline] sh + gzip -d /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm.bldlog.220203-150508.gz + cat /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm.bldlog.220203-150508 cmake -DMODEL=cam -DCOMPLIB=atm -DUSER_CPPDEFS="-DUWM_MISC -DSILHS -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=866 -DPLAT=1 -DNP=4 -DNC=4 -DHAVE_F2003_PTR_BND_REMAP -DNPG=0 -DPLEV=72 -DPCNST=40 -DPCOLS=16 -DPSUBCOLS=4 -DN_RAD_CNST=30 -DPTRM=1 -DPTRN=1 -DPTRK=1 -D_MPI -DCAM -D_WK_GRAD -D_PRIM -DSPMD -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DMODAL_AER -DRAIN_EVAP_TO_COARSE_AERO -DCLUBB_SGS -DCLUBB_CAM -DNO_LAPACK_ISNAN -DCLUBB_REAL_TYPE=dp -DE3SM -DHAVE_VPRINTF -DHAVE_TIMES -DHAVE_GETTIMEOFDAY -DHAVE_COMM_F2C -DHAVE_NANOTIME -DBIT64 -DHAVE_SLASHPROC" -DCIME_MODEL=e3sm -DUSE_KOKKOS=FALSE -DCASEROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts" -DCASETOOLS="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build" -DINCROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include" -DLIBROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="1" -DSHAREDLIBROOT="/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys cam5 -clubb_sgs -microphys mg2 -chem linoz_mam4_resus_mom -rain_evap_to_coarse_aero -nlev 72 -clubb_sgs -microphys mg2 -chem linoz_mam4_resus_mom_soag -rain_evap_to_coarse_aero -nlev 72 -bc_dep_to_snow_updates -nadv 40 -clubb_sgs -rad rrtmg -chem linoz_mam4_resus_mom_soag -rain_evap_to_coarse_aero -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- The Fortran compiler identification is GNU 10.2.1 -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj CHECK_STARTDetecting C compiler ABI info CHECK_PASSdone CHECK_STARTDetecting C compile features CHECK_PASSdone CHECK_STARTDetecting CXX compiler ABI info CHECK_PASSdone CHECK_STARTDetecting CXX compile features CHECK_PASSdone CHECK_STARTDetecting Fortran compiler ABI info CHECK_PASSdone CHECK_STARTChecking whether /opt/rh/devtoolset-10/root/bin/gfortran supports Fortran 90 CHECK_PASSyes CMake Warning at CMakeLists.txt:650 (message): Skipping repeated base filename rrtmg_lw_rad.f90 for cam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 CMake Warning at CMakeLists.txt:650 (message): Skipping repeated base filename rrtmg_sw_rad.f90 for cam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 CMake Warning at CMakeLists.txt:650 (message): Skipping repeated base filename vrtmap.F90 for cam/src/utils/vrtmap.F90 CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT USE_MOAB make -j 4 /usr/bin/cmake3 -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake3 -E cmake_progress_start /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/CMakeFiles /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' [ 0%] Built target genf90 make -f CMakeFiles/atm.dir/build.make CMakeFiles/atm.dir/depend make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' [ 0%] Generating buffer.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils/buffer.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/buffer.F90 [ 0%] Generating physics_buffer.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/physics_buffer.F90 [ 0%] Generating subcol_utils.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/subcol_utils.F90 cd /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj/CMakeFiles/atm.dir/DependInfo.cmake --color= Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' make -f CMakeFiles/atm.dir/build.make CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj' [ 0%] Building Fortran object CMakeFiles/atm.dir/cam/src/utils/cam_abortutils.F90.o [ 0%] Building Fortran object CMakeFiles/atm.dir/cam/src/control/cam_logfile.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/preqx -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/preqx/share -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/cam/src/control/cam_logfile.F90.o [ 0%] Building Fortran object CMakeFiles/atm.dir/cam/src/utils/namelist_utils.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_heatnirco2.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod sv_decomp.mod CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/m_sad_data.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake3 -E touch 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23%] Building Fortran object CMakeFiles/atm.dir/cam/src/utils/sgexx.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/cam/src/utils/sgexx.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod xpavg_mod.mod CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/domain_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/sort_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/thread_mod.F90.o.provides.build [ 23%] Building Fortran object CMakeFiles/atm.dir/cam/src/chemistry/mozart/apex_subs.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/utils/msise00.F90.o [ 23%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_setrxt.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_setrxt.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod mo_heatnirco2.mod CMakeFiles/atm.dir/mo_heatnirco2.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake3 -E touch 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/cam/src/physics/cam/gw_diffusion.F90.o [ 26%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/cam/diffusion_solver.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/aerosol 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touch CMakeFiles/atm.dir/cam/src/control/srchutil.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/units.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod vrtmap_mod.mod CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/geopotential.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod scyc.mod CMakeFiles/atm.dir/scyc.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/array_index.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/code_timer_module.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake3 -E touch 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CMakeFiles/atm.dir/cam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod sgexx.mod CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/kinds.F90.o.provides.build [ 26%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/preqx/share -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/cam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/utils/sgexx.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/time_mod.F90.o.provides.build 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_setozo.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod mo_sphers.mod CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake3 -E touch 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/cam/src/physics/cam/nucleate_ice.F90.o /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/unicon_utils.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/LY93_pdf.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/clubb/calc_pressure.F90.o.provides.build 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-DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/homme/src/share/compose_mod.F90.o [ 54%] Building Fortran object CMakeFiles/atm.dir/cam/src/dynamics/se/se_single_column_mod.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/preqx -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/preqx/share -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/cam/src/dynamics/se/se_single_column_mod.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod micro_mg2_0.mod CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/preqx/model_init_mod.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod prim_derived_type_mod.mod CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU [ 55%] Building Fortran object CMakeFiles/atm.dir/cam/src/utils/cam_pio_utils.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/cam/src/utils/cam_pio_utils.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod edge_mod.mod CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod horizontal_interpolate.mod CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod readinitial.mod CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod compose_mod.mod CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod se_single_column_mod.mod CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake3 -E touch 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CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 63%] Building Fortran object CMakeFiles/atm.dir/homme/src/share/mass_matrix_mod.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/homme/src/share/mass_matrix_mod.F90.o [ 63%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/rrtmg/rad_solar_var.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/cam/src/physics/rrtmg/rad_solar_var.F90.o /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod atm_comp_esmf.mod CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/preqx/bndry_mod.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/homme/src/share/interpolate_mod.F90.o.provides.build [ 63%] Building Fortran object CMakeFiles/atm.dir/cam/src/control/cam_history_support.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/cam/src/physics/cam/majorsp_diffusion.F90.o [ 70%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/cam/rayleigh_friction.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/cam/src/physics/cam/eddy_diff.F90.o [ 80%] Building Fortran object CMakeFiles/atm.dir/cam/src/dynamics/se/gravity_waves_sources.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 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/usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/physics/cam/subcol_tstcp.F90.o.provides.build [ 80%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/cam/unicon.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/cam/src/utils -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/mozart/exbdrift.F90.o /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/pp_linoz_mam4_resus_mom_soag/mo_imp_sol.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake3 -E cmake_copy_f90_mod ebert_curry.mod CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod slingo.mod CMakeFiles/atm.dir/slingo.mod.stamp 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/cam/src/physics/cam/nucleate_ice_cam.F90.o /usr/bin/cmake3 -E cmake_copy_f90_mod nudging.mod CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod sslt_rebin.mod CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod eddy_diff.mod CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake3 -E cmake_copy_f90_mod gravity_waves_sources.mod CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/control/history_scam.F90.o.provides.build 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/usr/bin/cmake3 -E cmake_copy_f90_mod lin_strat_chem.mod CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU [ 95%] Building Fortran object CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_photo.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AER -DMODAL_AERO -DMODAL_AERO_4MODE_MOM -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=40 -DPCOLS=16 -DPIO1 -DPLAT=1 -DPLEV=72 -DPLON=866 -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DRAIN_EVAP_TO_COARSE_AERO -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -D_WK_GRAD -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -I. 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_photo.F90.o /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/mozart/mo_photoin.F90.o.provides.build /usr/bin/cmake3 -E touch CMakeFiles/atm.dir/cam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 95%] Building Fortran object CMakeFiles/atm.dir/cam/src/physics/rrtmg/radiation.F90.o /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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/home/jenkins/workspace/branch_e3sm_test/components/cam/src/chemistry/mozart/wei96.F90:929:51: IF (IYYY.EQ.0) PAUSE 'There is no Year Zero.' 1 Warning: Deleted feature: PAUSE statement at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/unicon.F90:503:0: subroutine compute_unicon( mix , mkx , iend , ncnst , dt , & note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:90:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:91:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:93:34: real(r8), private, save :: lmin 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:92:61: type(nu_vertical_res_dep), private, save :: nu_vert_res_dep ! Vertical resolution dependent nu values 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:48:52: stats_lh_sfc, & ! stats_lh_sfc grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:47:51: stats_lh_zt, & ! stats_lh_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:50:52: stats_rad_zm, & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:49:52: stats_rad_zt, & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:51:49: stats_sfc ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:46:48: stats_zm, & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/clubb_intr.F90:45:40: type (stats), target, save :: stats_zt, & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/subcol_SILHS.F90:1544:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/cam/src/physics/cam/subcol_SILHS.F90:1557:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer [Pipeline] sh + gzip -d /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.220203-150508.gz + cat /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.220203-150508 Building a single executable version of target coupled model cat: Srcfiles: No such file or directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/mkSrcfiles cp -f Filepath Deppath /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/Tools/mkDepends Deppath Srcfiles > Depends /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include 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-I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -c -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.7.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/atm/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ice/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/ocn/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/glc/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/rof/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/wav/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/esp/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/iac/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lnd/obj -I. -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -DLinux -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DPIO1 -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -ffree-form -DUSE_CONTIGUOUS= /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -o /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.exe cime_comp_mod.o cime_driver.o component_mod.o component_type_mod.o cplcomp_exchange_mod.o map_glc2lnd_mod.o map_lnd2glc_mod.o map_lnd2rof_irrig_mod.o mrg_mod.o prep_aoflux_mod.o prep_atm_mod.o prep_glc_mod.o prep_iac_mod.o prep_ice_mod.o prep_lnd_mod.o prep_ocn_mod.o prep_rof_mod.o prep_wav_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_io_mod.o seq_map_mod.o seq_map_type_mod.o seq_rest_mod.o t_driver_timers_mod.o -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -latm -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lice -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lclm -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -locn -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lrof -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lglc -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lwav -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -lesp -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/lib/ -liac -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib -lcsm_share -L/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gnu/mpich/nodebug/nothreads/mct/lib -lpio -lgptl -lmct -lmpeu -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.7.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lrefblas -Wl,-rpath,/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.7.0-gfortran/lib [Pipeline] sh + gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz' gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE