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Started by user Keegan Rhodes Obtained jenkins_tests/katrina_sim/Jenkinsfile from git https://github.com/larson-group/wrf.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task ‘Mac’ is reserved for jobs with matching label expression Running on Jenkins in /home/jenkins/workspace/wrf_katrina_sim [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/wrf.git > git init /home/jenkins/workspace/wrf_katrina_sim # timeout=10 Fetching upstream changes from https://github.com/larson-group/wrf.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/wrf.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/wrf.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision c7cfb5c445d1f51f95b0641fbb9e2dcc11d0fb68 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f c7cfb5c445d1f51f95b0641fbb9e2dcc11d0fb68 # timeout=10 Commit message: "Reverted the surface to sfc change in Makefile" > git rev-list --no-walk e7301deeec15d66d6e60b1ca91551915b3beb1cc # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Katrina Case) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' ++++++ grep gcc ++++++ sed -e 's/^\ //' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='<NDK_DIR>' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']' +++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + WRF/test/em_real/run_Katrina.bash None of WRF_EM_CORE, WRF_NMM_CORE, specified in shell environment.... copying Registry/Registry.EM to Registry/Registry Compiling: WRF_EM_CORE . setting parallel make -j 2 make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/esmf_time_f90 -I/home/jenkins/workspace/wrf_katrina_sim/WRF/main -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_netcdf -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_int -I/home/jenkins/workspace/wrf_katrina_sim/WRF/frame -I/home/jenkins/workspace/wrf_katrina_sim/WRF/share -I/home/jenkins/workspace/wrf_katrina_sim/WRF/phys -I/home/jenkins/workspace/wrf_katrina_sim/WRF/chem -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include " ext make[1]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF' -------------------------------------- ( cd frame ; make -i -r externals ) make[2]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF/frame' ( cd /home/jenkins/workspace/wrf_katrina_sim/WRF/external/esmf_time_f90 ; \ make -j 2 FC="ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian " RANLIB="ranlib" \ CPP="/lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional" AR="ar" ARFLAGS="ru" ) make[3]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF/external/esmf_time_f90' /bin/rm -f ESMF_Base.o /bin/rm -f ESMF_Fraction.o sed -e "/\!.*'/s/'//g" ESMF_Fraction.F90 > ESMF_Fraction.b sed -e "/\!.*'/s/'//g" ESMF_Base.F90 > ESMF_Base.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Fraction.b > ESMF_Fraction.f /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Base.b > ESMF_Base.f /bin/rm -f ESMF_Fraction.b ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_Fraction.o -c ESMF_Fraction.f /bin/rm -f ESMF_Base.b ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_Base.o -c ESMF_Base.f /bin/rm -f ESMF_BaseTime.o sed -e "/\!.*'/s/'//g" ESMF_BaseTime.F90 > ESMF_BaseTime.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_BaseTime.b > ESMF_BaseTime.f /bin/rm -f ESMF_BaseTime.b ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_BaseTime.o -c ESMF_BaseTime.f /bin/rm -f ESMF_Calendar.o sed -e "/\!.*'/s/'//g" ESMF_Calendar.F90 > ESMF_Calendar.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Calendar.b > ESMF_Calendar.f /bin/rm -f ESMF_Calendar.b ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_Calendar.o -c ESMF_Calendar.f Aborted by Keegan Rhodes Sending interrupt signal to process /bin/rm -f ESMF_TimeInterval.o /bin/rm -f ESMF_Stubs.o sed -e "/\!.*'/s/'//g" ESMF_Stubs.F90 > ESMF_Stubs.b sed -e "/\!.*'/s/'//g" ESMF_TimeInterval.F90 > ESMF_TimeInterval.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Stubs.b > ESMF_Stubs.f /bin/rm -f ESMF_Stubs.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_TimeInterval.b > ESMF_TimeInterval.f ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_Stubs.o -c ESMF_Stubs.f /bin/rm -f ESMF_TimeInterval.b ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o ESMF_TimeInterval.o -c ESMF_TimeInterval.f make[3]: [Makefile:61: ESMF_Stubs.o] Error 15 (ignored) make[3]: [Makefile:56: ESMF_TimeInterval.o] Error 15 (ignored) /bin/rm -f ESMF_Time.o sed -e "/\!.*'/s/'//g" ESMF_Time.F90 > ESMF_Time.b /lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Time.b > ESMF_Time.f make[3]: [Makefile:58: ESMF_Time.o] Terminated (ignored) /bin/sh: line 2: 6300 Terminated make -j 2 FC="ifort -i4 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian " RANLIB="ranlib" CPP="/lib/cpp -C -P -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM -DUWM_MISC -DNETCDF -DCLUBB -DSILHS -DCLUBBSTATS -DTESTCASES -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional" AR="ar" ARFLAGS="ru" make[2]: [../configure.wrf:332: esmf_time] Error 143 (ignored) ( cd /home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_netcdf ; \ make -j 2 NETCDFPATH="/usr/local/NETCDF-Fortran-4.4.5-ifort" RANLIB="ranlib" CPP="/lib/cpp -C -P" \ CC="gcc" CFLAGS="-w -O3 -g -DMAX_HISTORY=25 -DNMM_CORE=0" \ FC="ifort -i4 -O3 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian " TRADFLAG="-traditional" AR="ar" ARFLAGS="ru" ) make[3]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_netcdf' grep nf_format_64bit /usr/local/NETCDF-Fortran-4.4.5-ifort/include/netcdf.inc ;\ a=$? ; export a ; \ if [ $a -a "$WRFIO_NCD_LARGE_FILE_SUPPORT" = "1" ] ; then \ /lib/cpp -C -P -C -P -traditional -DWRFIO_NCD_LARGE_FILE_SUPPORT -I../ioapi_share wrf_io.F90 | m4 -Uinclude -Uindex -Ulen - > wrf_io.f ; \ else \ /lib/cpp -C -P -C -P -traditional -I../ioapi_share wrf_io.F90 | m4 -Uinclude -Uindex -Ulen - > wrf_io.f ; \ fi /lib/cpp -C -P -C -P -traditional -I../ioapi_share module_wrfsi_static.F90 > module_wrfsi_static.f integer nf_format_64bit integer nf_format_64bit_offset integer nf_format_64bit_data parameter (nf_format_64bit = 2) parameter (nf_format_64bit_offset = nf_format_64bit) parameter (nf_format_64bit_data = 5) parameter (nf_format_cdf5 = nf_format_64bit_data) make[2]: [../configure.wrf:298: wrfio_nf] Terminated (ignored) /bin/sh: line 1: 6297 Terminated make -i -r externals make[1]: [Makefile:607: ext] Error 143 (ignored) make[1]: Leaving directory '/home/jenkins/workspace/wrf_katrina_sim/WRF' make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/esmf_time_f90 -I/home/jenkins/workspace/wrf_katrina_sim/WRF/main -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_netcdf -I/home/jenkins/workspace/wrf_katrina_sim/WRF/external/io_int -I/home/jenkins/workspace/wrf_katrina_sim/WRF/frame -I/home/jenkins/workspace/wrf_katrina_sim/WRF/share -I/home/jenkins/workspace/wrf_katrina_sim/WRF/phys -I/home/jenkins/workspace/wrf_katrina_sim/WRF/chem -I/home/jenkins/workspace/wrf_katrina_sim/WRF/inc -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include " toolsdir ifort -i4 -O3 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o module_wrfsi_static.o -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -I../ioapi_share -c module_wrfsi_static.f make[1]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF' -------------------------------------- ( cd tools ; make -i -r CC_TOOLS_CFLAGS="-DNMM_CORE=0" CC_TOOLS="gcc -DIWORDSIZE=4 -DMAX_HISTORY=25" ) make[2]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WRF/tools' gcc -DIWORDSIZE=4 -DMAX_HISTORY=25 -DNMM_CORE=0 -c -g registry.c make[1]: [Makefile:709: toolsdir] Terminated (ignored) make: *** [Makefile:56: framework_only] Terminated Terminated /home/jenkins/workspace/wrf_katrina_sim@tmp/durable-23b830e3/script.sh: line 2: 6279 Terminated WRF/test/em_real/run_Katrina.bash **** Compiling WPS and all utilities **** *************************************************************************************** Error : Not building geogrid. Check whether WRF is compiled in /home/jenkins/workspace/wrf_katrina_sim/WPS/../WRF *************************************************************************************** ( cd src/ngl ; make -i -r DEV_TOP="/home/jenkins/workspace/wrf_katrina_sim/WPS" CC="gcc" FC="ifort" RANLIB="echo" all ) ifort -i4 -O3 -ip -fp-model precise -w -ftz -align all -fno-alias -FR -fpp -convert big_endian -o wrf_io.o -I/usr/local/NETCDF-Fortran-4.4.5-ifort/include -I../ioapi_share -c wrf_io.f make[1]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WPS/ungrib/src/ngl' ( cd w3 ; make -i -r DEV_TOP="/home/jenkins/workspace/wrf_katrina_sim/WPS" all ; echo libw3.a ) registry.c: In function ‘main’: registry.c:60:3: warning: implicit declaration of function ‘sym_forget’; did you mean ‘sym_get’? [-Wimplicit-function-declaration] sym_forget() ; ^~~~~~~~~~ sym_get registry.c:132:3: warning: implicit declaration of function ‘gen_io_boilerplate’ [-Wimplicit-function-declaration] gen_io_boilerplate() ; /* 20091213 jm. Generate the io_boilerplate_temporary.inc file */ ^~~~~~~~~~~~~~~~~~ registry.c:134:3: warning: implicit declaration of function ‘init_parser’; did you mean ‘reg_parse’? [-Wimplicit-function-declaration] init_parser() ; ^~~~~~~~~~~ reg_parse make[2]: Entering directory '/home/jenkins/workspace/wrf_katrina_sim/WPS/ungrib/src/ngl/w3' Makefile:44: warning: overriding recipe for target '.f.o' /home/jenkins/workspace/wrf_katrina_sim/WPS/configure.wps:105: warning: ignoring old recipe for target '.f.o' Makefile:48: warning: overriding recipe for target '.c.o' /home/jenkins/workspace/wrf_katrina_sim/WPS/configure.wps:101: warning: ignoring old recipe for target '.c.o' /bin/rm -f bacio_module.o registry.c:157:8: warning: implicit declaration of function ‘pre_parse’; did you mean ‘reg_parse’? [-Wimplicit-function-declaration] if ( pre_parse( dir, fp_in, fp_tmp ) ) { ^~~~~~~~~ reg_parse registry.c:177:3: warning: implicit declaration of function ‘check_dimspecs’ [-Wimplicit-function-declaration] check_dimspecs() ; ^~~~~~~~~~~~~~ ifort -FI -convert big_endian -fpp -c bacio_module.f registry.c:187:3: warning: implicit declaration of function ‘gen_actual_args_new’; did you mean ‘gen_actual_args’? [-Wimplicit-function-declaration] gen_actual_args_new( "inc" ) ; ^~~~~~~~~~~~~~~~~~~ gen_actual_args registry.c:189:3: warning: implicit declaration of function ‘gen_dummy_args_new’; did you mean ‘gen_dummy_args’? [-Wimplicit-function-declaration] gen_dummy_args_new( "inc" ) ; ^~~~~~~~~~~~~~~~~~ gen_dummy_args registry.c:191:3: warning: implicit declaration of function ‘gen_dummy_decls_new’; did you mean ‘gen_dummy_decls’? [-Wimplicit-function-declaration] gen_dummy_decls_new( "inc" ) ; ^~~~~~~~~~~~~~~~~~~ gen_dummy_decls registry.c:193:3: warning: implicit declaration of function ‘gen_namelist_statements’; did you mean ‘gen_namelist_defines’? [-Wimplicit-function-declaration] gen_namelist_statements("inc") ; ^~~~~~~~~~~~~~~~~~~~~~~ gen_namelist_defines registry.c:203:3: warning: implicit declaration of function ‘gen_nest_interp’; did you mean ‘gen_nest_interp1’? [-Wimplicit-function-declaration] gen_nest_interp( "inc" ) ; ^~~~~~~~~~~~~~~ gen_nest_interp1 registry.c:205:3: warning: implicit declaration of function ‘gen_streams’; did you mean ‘gen_swaps’? [-Wimplicit-function-declaration] gen_streams("inc") ; ^~~~~~~~~~~ gen_swaps registry.c:208:3: warning: implicit declaration of function ‘gen_comms’; did you mean ‘gen_xposes’? [-Wimplicit-function-declaration] gen_comms( "inc" ) ; /* this is either package supplied (by copying a */ ^~~~~~~~~ gen_xposes gcc -DIWORDSIZE=4 -DMAX_HISTORY=25 -DNMM_CORE=0 -c -g my_strtok.c gcc -DIWORDSIZE=4 -DMAX_HISTORY=25 -DNMM_CORE=0 -c -g reg_parse.c script returned exit code 143 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for WRF completion) Stage "Check for WRF completion" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for WPS completion) Stage "Check for WPS completion" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for ARWpost completion) Stage "Check for ARWpost completion" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for Hurricane Katrina wrfout file) Stage "Check for Hurricane Katrina wrfout file" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for Hurricane Katrina GrADS output files) Stage "Check for Hurricane Katrina GrADS output files" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for SUCCESS_COMPLETE_WRF) Stage "Check for SUCCESS_COMPLETE_WRF" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: ABORTED