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Started by an SCM change Obtained Jenkinsfile from git https://github.com/larson-group/e3sm.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/e3sm_run_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_run_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision d148af187940282d3bf53ffbd8358b2e6affa43c (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f d148af187940282d3bf53ffbd8358b2e6affa43c # timeout=10 Commit message: "Autoupdated SILHS" > git rev-list --no-walk 201bc3522fa73ffd6d334497106b0afe425b3c2b # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'components/cam/src/physics/rrtmgp/external' (https://github.com/RobertPincus/rte-rrtmgp.git) registered for path 'components/cam/src/physics/rrtmgp/external' Submodule 'components/clm/src/external_models/fates' (https://github.com/NGEET/fates.git) registered for path 'components/clm/src/external_models/fates' Submodule 'alm-mpp' (https://github.com/MPP-LSM/MPP.git) registered for path 'components/clm/src/external_models/mpp' Submodule 'sbetr' (https://github.com/BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/clm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into 'components/cam/src/physics/rrtmgp/external'... Submodule path 'components/cam/src/physics/rrtmgp/external': checked out '0b1cffdd51a35045c28aae314e2b29e2a663b5e6' Cloning into 'components/clm/src/external_models/fates'... Submodule path 'components/clm/src/external_models/fates': checked out '1ad93c311ed1a5d45df656b9031c8714a7071e64' Cloning into 'components/clm/src/external_models/mpp'... Submodule path 'components/clm/src/external_models/mpp': checked out '82ef0c1a37ffd469e9a6ce84dbf487c6ef8762b2' Cloning into 'components/clm/src/external_models/sbetr'... Submodule path 'components/clm/src/external_models/sbetr': checked out 'd71fb2df928099bacc4e9a3a9f4b8a1f2a6e37a1' Cloning into 'components/mpas-source'... Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Cloning into 'externals/scorpio_classic'... Submodule path 'externals/scorpio_classic': checked out '1e538b56fa7cfa209c119e866a95669875eb200d' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' ++++++ sed -e 's/^\ //' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='<NDK_DIR>' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']' +++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: d148af1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-02-17 04:48:00 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:48:01 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:48:01 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:48:01 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:48:01 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:48:01 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:48:01 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:48:01 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:48:01 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:48:01 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-02-17 04:48:04 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:48:04 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:48:04 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:48:04 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:48:04 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:48:04 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:48:04 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:48:04 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:48:04 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:48:04 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.210217-044804 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.210217-044804 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.210217-044804 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.210217-044804 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210217-044804 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd.bldlog.210217-044804 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ice.bldlog.210217-044804 - Building ocn Library - Building rof Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/ocn.bldlog.210217-044804 Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/rof.bldlog.210217-044804 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/glc.bldlog.210217-044804 - Building wav Library - Building iac Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/wav.bldlog.210217-044804 - Building esp Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/iac.bldlog.210217-044804 Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/esp.bldlog.210217-044804 sglc built in 0.504776 seconds srof built in 0.543482 seconds sesp built in 0.516808 seconds swav built in 0.543155 seconds siac built in 0.557007 seconds docn built in 1.150244 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 20.601294 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 98.629741 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 107.083847 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.210217-044804 Component e3sm exe build complete with 3 warnings Time spent not building: 1.093095 sec Time spent building: 152.526028 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-02-17 04:50:38 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:50:38 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:50:38 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:50:38 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:50:38 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:50:38 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:50:38 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:50:38 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:50:38 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:50:38 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-02-17 04:50:38 CASE.RUN BEGINS HERE 2021-02-17 04:50:38 RUN_MODEL BEGINS HERE 2021-02-17 04:50:38 PRE_RUN_CHECK BEGINS HERE 2021-02-17 04:50:38 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts Creating component namelists 2021-02-17 04:50:39 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:50:39 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:50:39 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:50:39 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:50:39 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:50:39 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:50:39 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:50:39 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:50:39 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:50:39 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-02-17 04:50:39 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-02-17 04:50:39 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-02-17 04:50:39 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-02-17 04:50:39 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-02-17 04:50:39 MODEL EXECUTION BEGINS HERE 2021-02-17 04:51:27 MODEL EXECUTION HAS FINISHED 2021-02-17 04:51:27 POST_RUN_CHECK BEGINS HERE 2021-02-17 04:51:27 POST_RUN_CHECK HAS FINISHED 2021-02-17 04:51:27 RUN_MODEL HAS FINISHED 2021-02-17 04:51:27 GET_TIMING BEGINS HERE 2021-02-17 04:51:27 GET_TIMING HAS FINISHED 2021-02-17 04:51:27 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-02-17 04:51:27 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-02-17 04:51:27 CASE.RUN HAS FINISHED Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ sed -e 's/^\ //' ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='<NDK_DIR>' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']' +++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: d148af1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-02-17 04:51:43 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:51:43 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:51:43 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:51:43 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:51:43 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:51:43 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:51:43 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:51:43 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:51:43 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:51:43 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-02-17 04:51:46 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:51:46 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:51:46 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:51:46 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:51:46 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:51:46 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:51:46 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:51:46 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:51:46 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:51:46 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.210217-045146 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.210217-045146 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.210217-045146 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.210217-045146 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210217-045146 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd.bldlog.210217-045146 - Building ice Library Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ice.bldlog.210217-045146 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ocn.bldlog.210217-045146 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/rof.bldlog.210217-045146 - Building glc Library - Building wav Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/glc.bldlog.210217-045146 Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/wav.bldlog.210217-045146 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/iac.bldlog.210217-045146 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/esp.bldlog.210217-045146 sesp built in 0.542535 seconds srof built in 0.557335 seconds sglc built in 0.603845 seconds siac built in 0.597669 seconds swav built in 0.608954 seconds docn built in 1.188410 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 21.125175 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 97.532137 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 107.071931 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.210217-045146 Component e3sm exe build complete with 3 warnings Time spent not building: 1.047711 sec Time spent building: 152.159170 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-02-17 04:54:19 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:54:19 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:54:20 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:54:20 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:54:20 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:54:20 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:54:20 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:54:20 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:54:20 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:54:20 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-02-17 04:54:20 CASE.RUN BEGINS HERE 2021-02-17 04:54:20 RUN_MODEL BEGINS HERE 2021-02-17 04:54:20 PRE_RUN_CHECK BEGINS HERE 2021-02-17 04:54:20 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts Creating component namelists 2021-02-17 04:54:20 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:54:20 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:54:20 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:54:21 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:54:21 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:54:21 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:54:21 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:54:21 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:54:21 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:54:21 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-02-17 04:54:21 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-02-17 04:54:21 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-02-17 04:54:21 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-02-17 04:54:21 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-02-17 04:54:21 MODEL EXECUTION BEGINS HERE 2021-02-17 04:55:08 MODEL EXECUTION HAS FINISHED 2021-02-17 04:55:08 POST_RUN_CHECK BEGINS HERE 2021-02-17 04:55:08 POST_RUN_CHECK HAS FINISHED 2021-02-17 04:55:08 RUN_MODEL HAS FINISHED 2021-02-17 04:55:08 GET_TIMING BEGINS HERE 2021-02-17 04:55:09 GET_TIMING HAS FINISHED 2021-02-17 04:55:09 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-02-17 04:55:09 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-02-17 04:55:09 CASE.RUN HAS FINISHED Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ sed -e 's/^\ //' ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='<NDK_DIR>' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/pgi/linux86-64/19.7/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']' +++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:/opt/oracle/developerstudio12.6/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_test; csh nightly_test/nightly_e3sm_scm_RICO.csh; exit 0' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: d148af1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-02-17 04:55:24 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:55:24 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:55:24 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:55:25 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:55:25 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:55:25 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:55:25 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:55:25 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:55:25 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:55:25 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-02-17 04:55:27 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:55:27 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:55:28 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:55:28 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:55:28 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:55:28 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:55:28 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:55:28 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:55:28 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:55:28 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.210217-045527 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.210217-045527 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.210217-045527 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.210217-045527 Calling /home/jenkins/workspace/e3sm_run_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/atm.bldlog.210217-045527 - Building lnd Library - Building ice Library Building lnd with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/lnd.bldlog.210217-045527 Building ice with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ice.bldlog.210217-045527 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/ocn.bldlog.210217-045527 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/rof.bldlog.210217-045527 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/glc.bldlog.210217-045527 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/wav.bldlog.210217-045527 - Building iac Library - Building esp Library Building iac with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/iac.bldlog.210217-045527 Building esp with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/esp.bldlog.210217-045527 swav built in 0.508459 seconds sesp built in 0.551037 seconds siac built in 0.577958 seconds srof built in 0.603313 seconds sglc built in 0.598477 seconds docn built in 1.210445 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 98.818084 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 98.899546 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 107.149683 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.210217-045527 Component e3sm exe build complete with 3 warnings Time spent not building: 1.060242 sec Time spent building: 152.939454 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-02-17 04:58:01 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:58:02 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:58:02 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:58:02 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:58:02 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:58:02 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:58:02 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:58:02 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:58:02 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:58:02 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-02-17 04:58:03 CASE.RUN BEGINS HERE 2021-02-17 04:58:03 RUN_MODEL BEGINS HERE 2021-02-17 04:58:03 PRE_RUN_CHECK BEGINS HERE 2021-02-17 04:58:03 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/case_scripts Creating component namelists 2021-02-17 04:58:03 atm Calling /home/jenkins/workspace/e3sm_run_test/components/cam/cime_config/buildnml 2021-02-17 04:58:03 lnd Calling /home/jenkins/workspace/e3sm_run_test/components/clm/cime_config/buildnml 2021-02-17 04:58:03 ice Calling /home/jenkins/workspace/e3sm_run_test/components/cice/cime_config/buildnml 2021-02-17 04:58:03 ocn Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-02-17 04:58:03 rof Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-02-17 04:58:03 glc Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-02-17 04:58:03 wav Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-02-17 04:58:03 iac Running /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-02-17 04:58:03 esp Calling /home/jenkins/workspace/e3sm_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-02-17 04:58:03 cpl Calling /home/jenkins/workspace/e3sm_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-02-17 04:58:04 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-02-17 04:58:04 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-02-17 04:58:04 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-02-17 04:58:04 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-02-17 04:58:04 MODEL EXECUTION BEGINS HERE 2021-02-17 04:58:51 MODEL EXECUTION HAS FINISHED 2021-02-17 04:58:51 POST_RUN_CHECK BEGINS HERE 2021-02-17 04:58:51 POST_RUN_CHECK HAS FINISHED 2021-02-17 04:58:51 RUN_MODEL HAS FINISHED 2021-02-17 04:58:51 GET_TIMING BEGINS HERE 2021-02-17 04:58:51 GET_TIMING HAS FINISHED 2021-02-17 04:58:51 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-02-17 04:58:51 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-02-17 04:58:51 CASE.RUN HAS FINISHED Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS