Started by user admin Obtained jenkins_tests/sam_clubb_pgi_build/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/sam_clubb_pgi_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/sam_clubb_pgi_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 217f62a08714b0e73873edc060674296cff18ce3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 217f62a08714b0e73873edc060674296cff18ce3 # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 650cd4c0dc90ff1c184e4617092fbc9c1c2a657e Author: Gunther Huebler Date: Sun Mar 24 12:54:53 2024 -0500 Adding sum part to comment" > git rev-list --no-walk 217f62a08714b0e73873edc060674296cff18ce3 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/RESTART ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OBJ ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OBJ OBJ cat if ( -e /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/sam_clubb_pgi_build/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/clubb_precision.F90; /opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfixed -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SIMULATORS/MISR_simulator.f gmake: /opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90: No such file or directory /bin/sh: 1: /opt/nvidia/hpc_/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5/sdk/Linux_x86_64/22.5/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90: not found gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:701: MISR_simulator.o] Error 127 gmake: *** Waiting for unfinished jobs.... gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:699: clubb_precision.o] Error 127 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cat runsam.log cat: runsam.log: No such file or directory [Pipeline] echo SAM did not create a log. [Pipeline] sh + cp runsam.log /home/jenkins/test_logs/sam_clubb_pgi_build/ cp: cannot stat 'runsam.log': No such file or directory [Pipeline] } [Pipeline] // script Error when executing always post condition: Also: org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 05238053-baef-422f-a041-84b72426763b hudson.AbortException: script returned exit code 1 at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:668) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:614) at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:555) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539) at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at java.base/java.lang.Thread.run(Thread.java:840) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE