Started by an SCM change
Obtained jenkins_tests/wrf_clubb_silhs_parallel_ifort/Jenkinsfile from git <a href='https://github.com/larson-group/wrf.git'>https://github.com/larson-group/wrf.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/condella/' class='jenkins-table__link model-link model-link--float'>condella</a> in /home/jenkins/workspace/wrf_clubb_silhs_parallel_ifort
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/wrf.git'>https://github.com/larson-group/wrf.git</a>
 &gt; git init /home/jenkins/workspace/wrf_clubb_silhs_parallel_ifort # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/wrf.git'>https://github.com/larson-group/wrf.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.30.2'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/wrf.git'>https://github.com/larson-group/wrf.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision a5757766af77951dceedee54a0d190bd9daabee6 (refs/remotes/origin/master)
Commit message: "Autoupdated CLUBB_core Commit ef65d2727180b4c76d113cc0da1f6b5d4d3f1610 Author: bmg929 Date: Thu Jul 11 22:36:57 2024 -0500 This code in adj_low_res_nu was using the ghost point when grid_type = 2. This has now been changed to not include the ghost level. This code is BIT_CHANGING."
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/wrf.git'>https://github.com/larson-group/wrf.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f a5757766af77951dceedee54a0d190bd9daabee6 # timeout=10
 &gt; git rev-list --no-walk 9162cb784e63db27930db807704bab175376f45a # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Run WRF_Parallel_test.sh">[Pipeline] { (Run WRF_Parallel_test.sh)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e
++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e
++ source /usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-3552rvkhu4qfxfzyzb7zxriff2fncj6e/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core
+ module load intel netcdf-fortran mpich intel-oneapi-mkl
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod has detected the following error: The following module(s) are unknown:
"gcc-runtime/13.1.0-eheq3uy" "glibc/2.33-3y65nib"

Please check the spelling or version number. Also try "module spider ..."
It is also possible your cache file is out-of-date; it may help to try:
  $ module --ignore_cache load "gcc-runtime/13.1.0-eheq3uy"
"glibc/2.33-3y65nib"

Also make sure that all modulefiles written in TCL start with the string
#%Module

Executing this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname       Module Filename
    ---------------       ---------------
    netcdf-fortran/4.5.3  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "gcc-runtime/13.1.0-eheq3uy" which
failed while processing the following module(s):

    Module fullname                        Module Filename
    ---------------                        ---------------
    intel-oneapi-runtime/2023.2.0-kv4mcmm  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/intel-oneapi-runtime/2023.2.0-kv4mcmm.lua
    netcdf-fortran/4.5.3                   /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname                        Module Filename
    ---------------                        ---------------
    intel-oneapi-runtime/2023.2.0-kv4mcmm  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/intel-oneapi-runtime/2023.2.0-kv4mcmm.lua
    netcdf-fortran/4.5.3                   /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname       Module Filename
    ---------------       ---------------
    netcdf-c/4.9.2        /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-c/4.9.2.lua
    netcdf-fortran/4.5.3  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname       Module Filename
    ---------------       ---------------
    hdf5/1.14.3-z6lzmbh   /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/hdf5/1.14.3-z6lzmbh.lua
    netcdf-c/4.9.2        /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-c/4.9.2.lua
    netcdf-fortran/4.5.3  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname       Module Filename
    ---------------       ---------------
    mpich/4.2.1           /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/mpich/4.2.1.lua
    hdf5/1.14.3-z6lzmbh   /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/hdf5/1.14.3-z6lzmbh.lua
    netcdf-c/4.9.2        /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-c/4.9.2.lua
    netcdf-fortran/4.5.3  /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/netcdf-fortran/4.5.3.luaExecuting this command requires loading "glibc/2.33-3y65nib" which failed while
processing the following module(s):

    Module fullname  Module Filename
    ---------------  ---------------
    mpich/4.2.1      /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/oneapi/2023.2.0/mpich/4.2.1.lua


Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 1
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="19" startId="19" enclosingId="18">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="20" startId="20" enclosingId="19">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="21" enclosingId="20">[Pipeline] sh
</span><span class="pipeline-node-21">+ cat 'WRF/test/em_quarter_ss/rsl.out.*'
cat: 'WRF/test/em_quarter_ss/rsl.out.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="22" enclosingId="20">[Pipeline] echo
</span><span class="pipeline-node-22">WRF did not make all the logs
</span><span class="pipeline-new-node" nodeId="23" enclosingId="20">[Pipeline] sh
</span><span class="pipeline-node-23">+ cp 'WRF/test/em_quarter_ss/rsl.out.*' 'WRF/test/em_quarter_ss/rsl.error.*' /home/jenkins/test_logs/wrf_clubb_silhs_parallel_ifort/
cp: cannot stat 'WRF/test/em_quarter_ss/rsl.out.*': No such file or directory
cp: cannot stat 'WRF/test/em_quarter_ss/rsl.error.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="24" startId="20">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="25" startId="19">[Pipeline] // script
</span>Error when executing always post condition:
Also:   org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 2949959c-d073-4025-b112-88bd53852eb1
hudson.AbortException: script returned exit code 1
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:668)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:614)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:555)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)

<span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="18">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="26">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="28" enclosingId="27">[Pipeline] emailext
</span><span class="pipeline-node-28">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="29" startId="27">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="26">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="31" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="33" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="35" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="36" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="37" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE