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final loop pushes (#1012)

* Pushing loop into clip_rcm

* Pushing column loop into trapezoid routines.

* Pushing column loop into clip_covar routines.

* Pushing column loop into clip_variance and clip_skewness.

* Replacing sgn_turbulent_velocity with built in fortran sign

* Removing gr from argument list of stats calls, replacing with just nz

* Replacing some usages of gr with just the number of vertical levels

* Replacing some usages of gr with just the number of vertical levels again

* Missed a couple files to commit

* Pushing some loops and removing need for gr to be passed into some routines.

* Pushing loop into advance_xp3

* Pushing loop into mixing length

* Some more loop pushing

* Pushing some loops into mono_flux limit, skipping the lhs routine since it's a bit tricky at the moment, will do after change to grid class.

* Removing gr from argument list of stats accumulate

* Precalculating zt2zm so that we can use 2d version

* Precalculating um/vm ddzt so that we can use 2d version

* Precalculating things to use 2d version of zt2zm

* Making 2d version of cubic interp for grid class

* Small modifications to sponge damping code argument lists

* Renaming some variables
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</comment><date>2022-05-31 18:35:00 -0500</date><id>61c746d33d8cc16f319a3c341d6b5dd0c822112f</id><msg>Making compatible with latest clubb change.</msg><path><editType>edit</editType><file>WRF/phys/module_bl_clubb.F</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_wp2_wp3_module.F90</affectedPath><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><affectedPath>advance_xm_wpxp_module.F90</affectedPath><affectedPath>pdf_closure_module.F90</affectedPath><affectedPath>pdf_parameter_module.F90</affectedPath><affectedPath>new_pdf_main.F90</affectedPath><affectedPath>new_hybrid_pdf_main.F90</affectedPath><commitId>113beb1ec6663fcef3f6bb75c7ee971ab3c0fa45</commitId><timestamp>1654040788000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Making pdf_implicit_coefs_terms a type containing 2D arrays. (#1014)

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</comment><date>2022-06-01 14:44:16 -0500</date><id>7bc6f76ec8b70bc1789f90b554dca47122c40001</id><msg>The G_unit tests never allocated pdf_implicit_coefs_terms. It's unclear to me how these were working before, but it seems that something about making these 2D allocatable arrays exposed the bug.</msg><path><editType>edit</editType><file>new_hybrid_pdf_main.F90</file></path><path><editType>edit</editType><file>new_pdf_main.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><commitId>de73c4eefaee2b50045b4f5e706868e84b0f4550</commitId><timestamp>1654117361000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making zt2zm calls with pdf_implicit_coefs_terms use the 2D version.
</comment><date>2022-06-01 16:02:41 -0500</date><id>de73c4eefaee2b50045b4f5e706868e84b0f4550</id><msg>Making zt2zm calls with pdf_implicit_coefs_terms use the 2D version.</msg><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><commitId>3643c78f6fe2260f971bba96ead125858b665f1c</commitId><timestamp>1654122180000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Removing setup_grid and setup_parameters functionality from setup_clubb_core. This is beacuse in host models the required grid information may not be known during the setup process, resulting in dummy arguments for setup_clubb_core and the grid and paramters being setup during runtime anyway. Now, in the host models we can call these subroutines immediately after setup_clubb_core to maintain identical functionality (sam, wrf), and in others we can wait to call these until the main timestepping procedure (cam,e3sm).
</comment><date>2022-06-01 17:23:00 -0500</date><id>3643c78f6fe2260f971bba96ead125858b665f1c</id><msg>Removing setup_grid and setup_parameters functionality from setup_clubb_core. This is beacuse in host models the required grid information may not be known during the setup process, resulting in dummy arguments for setup_clubb_core and the grid and paramters being setup during runtime anyway. Now, in the host models we can call these subroutines immediately after setup_clubb_core to maintain identical functionality (sam, wrf), and in others we can wait to call these until the main timestepping procedure (cam,e3sm).</msg><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>WRF/phys/module_bl_clubb.F</affectedPath><commitId>c43ec1bcb778ce3b72959c024f0e44250684a1a7</commitId><timestamp>1654122230000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making compatible with latest clubb change.
</comment><date>2022-06-01 17:23:50 -0500</date><id>c43ec1bcb778ce3b72959c024f0e44250684a1a7</id><msg>Making compatible with latest clubb change.</msg><path><editType>edit</editType><file>WRF/phys/module_bl_clubb.F</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>grid_class.F90</affectedPath><affectedPath>parameters_tunable.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><commitId>c623b91a9bf812b85b51b575233ad00e8b98f16c</commitId><timestamp>1654129942000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making 2D versions of setup_grid and setup_parameters.
</comment><date>2022-06-01 19:32:22 -0500</date><id>c623b91a9bf812b85b51b575233ad00e8b98f16c</id><msg>Making 2D versions of setup_grid and setup_parameters.</msg><path><editType>edit</editType><file>grid_class.F90</file></path><path><editType>edit</editType><file>parameters_tunable.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>196</number><url>http://carson.math.uwm.edu/jenkins/job/wrf_clubb_silhs_parallel_ifort/196/</url></nextBuild><previousBuild><number>194</number><url>http://carson.math.uwm.edu/jenkins/job/wrf_clubb_silhs_parallel_ifort/194/</url></previousBuild></nextBuild><previousBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><originmaster _class='hudson.plugins.git.util.Build'><buildNumber>76</buildNumber><marked><SHA1>d3946a586f66f155af6c32d7c6f9ed92389388cf</SHA1><branch><SHA1>d3946a586f66f155af6c32d7c6f9ed92389388cf</SHA1><name>origin/master</name></branch></marked><revision><SHA1>d3946a586f66f155af6c32d7c6f9ed92389388cf</SHA1><branch><SHA1>d3946a586f66f155af6c32d7c6f9ed92389388cf</SHA1><name>origin/master</name></branch></revision></originmaster><originchanges_to_not_break _class='hudson.plugins.git.util.Build'><buildNumber>72</buildNumber><marked><SHA1>c7eb33836dd22870dc48b2acd2b5b340dbeef909</SHA1><branch><SHA1>c7eb33836dd22870dc48b2acd2b5b340dbeef909</SHA1><name>origin/changes_to_not_break</name></branch></marked><revision><SHA1>c7eb33836dd22870dc48b2acd2b5b340dbeef909</SHA1><branch><SHA1>c7eb33836dd22870dc48b2acd2b5b340dbeef909</SHA1><name>origin/changes_to_not_break</name></branch></revision></originchanges_to_not_break><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>193</buildNumber><marked><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><branch><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><branch><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><branch><SHA1>4a9d6365e363273566dc35360695cabe197a16dc</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/wrf.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#193</displayName><duration>4164455</duration><estimatedDuration>1496309</estimatedDuration><fullDisplayName>wrf_clubb_silhs_parallel_ifort #193</fullDisplayName><id>193</id><keepLog>false</keepLog><number>193</number><queueId>15586</queueId><result>SUCCESS</result><timestamp>1653726011043</timestamp><url>http://carson.math.uwm.edu/jenkins/job/wrf_clubb_silhs_parallel_ifort/193/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>setup_clubb_pdf_params.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><commitId>e3cdb98eb6cc532f8ef187f2d1cc56481a75d1f5</commitId><timestamp>1653690057000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Constructing rcm within SILHS (as rcm_pdf) (#1011)

* Constructing rcm within SILHS (as rcm_pdf) to avoid having to pass rcm directly to SILHS. Relevant to possibly moving PDF call placement
into the "post" position in CAM.

See https://github.com/ESCOMP/CAM/issues/582.

* Reconstructing rcm inside of setup_pdf_parameters instead of passing it through
the argument lists.  Might help NCAR move the PDF call placement to "post" position
in CAM.

See https://github.com/larson-group/clubb/issues/997.

* Adding descriptive comment.
</comment><date>2022-05-27 16:20:57 -0600</date><id>e3cdb98eb6cc532f8ef187f2d1cc56481a75d1f5</id><msg>Constructing rcm within SILHS (as rcm_pdf) (#1011)</msg><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>setup_clubb_pdf_params.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>silhs_api_module.F90</affectedPath><affectedPath>latin_hypercube_driver_module.F90</affectedPath><commitId>f6c58abafbfc4b18957f9eedff60deeb321bad32</commitId><timestamp>1653690057000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Constructing rcm within SILHS (as rcm_pdf) (#1011)

* Constructing rcm within SILHS (as rcm_pdf) to avoid having to pass rcm directly to SILHS. Relevant to possibly moving PDF call placement
into the "post" position in CAM.

See https://github.com/ESCOMP/CAM/issues/582.

* Reconstructing rcm inside of setup_pdf_parameters instead of passing it through
the argument lists.  Might help NCAR move the PDF call placement to "post" position
in CAM.

See https://github.com/larson-group/clubb/issues/997.

* Adding descriptive comment.
</comment><date>2022-05-27 16:20:57 -0600</date><id>f6c58abafbfc4b18957f9eedff60deeb321bad32</id><msg>Constructing rcm within SILHS (as rcm_pdf) (#1011)</msg><path><editType>edit</editType><file>latin_hypercube_driver_module.F90</file></path><path><editType>edit</editType><file>silhs_api_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>WRF/phys/module_bl_clubb.F</affectedPath><commitId>3751ccb844377b23142f07d93e20d4104cf0d3f1</commitId><timestamp>1653690084000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></author><authorEmail>benjamin.andrew.stephens@gmail.com</authorEmail><comment>Updating for changes to CLUBB.  See https://github.com/larson-group/clubb/commit/e4f125ba067ba8083f917e0e06b6b2398483d3e4.
</comment><date>2022-05-27 17:21:24 -0500</date><id>3751ccb844377b23142f07d93e20d4104cf0d3f1</id><msg>Updating for changes to CLUBB.  See https://github.com/larson-group/clubb/commit/e4f125ba067ba8083f917e0e06b6b2398483d3e4.</msg><path><editType>edit</editType><file>WRF/phys/module_bl_clubb.F</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><inProgress>false</inProgress><nextBuild><number>194</number><url>http://carson.math.uwm.edu/jenkins/job/wrf_clubb_silhs_parallel_ifort/194/</url></nextBuild><previousBuild><number>192</number><url>http://carson.math.uwm.edu/jenkins/job/wrf_clubb_silhs_parallel_ifort/192/</url></previousBuild></previousBuild></workflowRun>