+ clubb/postprocessing/pyplotgen/pyplotgen.py -replace -les -wrf WRF/test/em_quarter_ss/WRF_CLUBB -clubb CLUBB -output_dir 27cfd1b
Installing uv 0.11.32 in /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: clubb/.venv-python
Activate with: source clubb/.venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/.venv-python
Using Python 3.12.3 environment at: clubb/.venv-python
Resolved 25 packages in 923ms
Building fpdf==1.7.2
Downloading matplotlib (8.4MiB)
Downloading pygments (1.2MiB)
Downloading kiwisolver (1.4MiB)
Downloading pillow (6.6MiB)
Downloading pandas (10.3MiB)
Downloading numpy (16.0MiB)
Downloading meson (1.1MiB)
Downloading fonttools (5.1MiB)
Downloading cftime (1.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading opencv-python-headless (59.1MiB)
Downloaded kiwisolver
Downloaded cftime
Built fpdf==1.7.2
Downloaded meson
Downloaded pygments
Downloaded pillow
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded pandas
Downloaded opencv-python-headless
Prepared 25 packages in 2.16s
Installed 25 packages in 32ms
+ certifi==2026.7.22
+ cftime==1.6.6
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.66.1
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.4
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.6.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/.venv-python/bin/python
/home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
----------
Progress: 0 of ? total .png panels complete
Progress: 7 of 174 total .png panels complete
Progress: 9 of 174 total .png panels complete
Progress: 11 of 174 total .png panels complete
Progress: 13 of 174 total .png panels complete
Progress: 15 of 174 total .png panels complete
Progress: 17 of 174 total .png panels complete
Progress: 20 of 174 total .png panels complete
Progress: 21 of 174 total .png panels complete
Progress: 24 of 174 total .png panels complete
Progress: 27 of 174 total .png panels complete
Progress: 30 of 174 total .png panels complete
Progress: 33 of 174 total .png panels complete
Progress: 35 of 174 total .png panels complete
Progress: 37 of 174 total .png panels complete
Progress: 40 of 174 total .png panels complete
Progress: 42 of 174 total .png panels complete
Progress: 45 of 231 total .png panels complete
Progress: 47 of 231 total .png panels complete
Progress: 49 of 231 total .png panels complete
Progress: 51 of 231 total .png panels complete
Progress: 55 of 231 total .png panels complete
Progress: 57 of 231 total .png panels complete
Progress: 61 of 231 total .png panels complete
Progress: 64 of 307 total .png panels complete
Progress: 67 of 307 total .png panels complete
Progress: 71 of 307 total .png panels complete
Progress: 74 of 307 total .png panels complete
Progress: 77 of 307 total .png panels complete
Progress: 81 of 307 total .png panels complete
Progress: 85 of 307 total .png panels complete
Progress: 89 of 307 total .png panels complete
Progress: 92 of 307 total .png panels complete
Progress: 95 of 307 total .png panels complete
Progress: 99 of 307 total .png panels complete
Progress: 101 of 307 total .png panels complete
Progress: 107 of 307 total .png panels complete
Progress: 111 of 307 total .png panels complete
Progress: 114 of 307 total .png panels complete
Progress: 118 of 307 total .png panels complete
Progress: 123 of 307 total .png panels complete
Progress: 124 of 307 total .png panels complete
Progress: 128 of 307 total .png panels complete
Progress: 132 of 307 total .png panels complete
Progress: 135 of 307 total .png panels complete
Progress: 139 of 307 total .png panels complete
Progress: 142 of 307 total .png panels complete
Progress: 146 of 307 total .png panels complete
Progress: 151 of 307 total .png panels complete
Progress: 154 of 307 total .png panels complete
Progress: 160 of 307 total .png panels complete
Progress: 165 of 307 total .png panels complete
Progress: 169 of 307 total .png panels complete
Progress: 173 of 307 total .png panels complete
Progress: 177 of 307 total .png panels complete
Progress: 179 of 307 total .png panels complete
Progress: 182 of 307 total .png panels complete
Progress: 187 of 307 total .png panels complete
Progress: 188 of 307 total .png panels complete
Progress: 12 of 174 total .png panels complete
Progress: 16 of 174 total .png panels complete
Progress: 19 of 174 total .png panels complete
Progress: 23 of 174 total .png panels complete
Progress: 26 of 174 total .png panels complete
Progress: 29 of 174 total .png panels complete
Progress: 31 of 174 total .png panels complete
Progress: 34 of 174 total .png panels complete
Progress: 38 of 174 total .png panels complete
Progress: 41 of 174 total .png panels complete
Progress: 44 of 174 total .png panels complete
Progress: 46 of 231 total .png panels complete
Progress: 50 of 231 total .png panels complete
Progress: 52 of 231 total .png panels complete
Progress: 54 of 231 total .png panels complete
Progress: 58 of 231 total .png panels complete
Progress: 60 of 231 total .png panels complete
Progress: 62 of 231 total .png panels complete
Progress: 66 of 307 total .png panels complete
Progress: 68 of 307 total .png panels complete
Progress: 72 of 307 total .png panels complete
Progress: 76 of 307 total .png panels complete
Progress: 80 of 307 total .png panels complete
Progress: 84 of 307 total .png panels complete
Progress: 88 of 307 total .png panels complete
Progress: 93 of 307 total .png panels complete
Progress: 97 of 307 total .png panels complete
Progress: 102 of 307 total .png panels complete
Progress: 105 of 307 total .png panels complete
Progress: 108 of 307 total .png panels complete
Progress: 112 of 307 total .png panels complete
Progress: 117 of 307 total .png panels complete
Progress: 120 of 307 total .png panels complete
Progress: 126 of 307 total .png panels complete
Progress: 129 of 307 total .png panels complete
Progress: 133 of 307 total .png panels complete
Progress: 137 of 307 total .png panels complete
Progress: 140 of 307 total .png panels complete
Progress: 145 of 307 total .png panels complete
Progress: 148 of 307 total .png panels complete
Progress: 152 of 307 total .png panels complete
Progress: 157 of 307 total .png panels complete
Progress: 159 of 307 total .png panels complete
Progress: 164 of 307 total .png panels complete
Progress: 167 of 307 total .png panels complete
Progress: 171 of 307 total .png panels complete
Progress: 174 of 307 total .png panels complete
Progress: 181 of 307 total .png panels complete
Progress: 186 of 307 total .png panels complete
Progress: 189 of 307 total .png panels complete
Progress: 193 of 307 total .png panels complete
Progress: 197 of 307 total .png panels complete
Progress: 201 of 307 total .png panels complete
Progress: 204 of 307 total .png panels complete
Progress: 208 of 307 total .png panels complete
Progress: 212 of 307 total .png panels complete
Progress: 214 of 307 total .png panels complete
Progress: 216 of 307 total .png panels complete
Progress: 1 of 58 total .png panels complete
Progress: 2 of 58 total .png panels complete
Progress: 3 of 58 total .png panels complete
Progress: 4 of 58 total .png panels complete
Progress: 5 of 116 total .png panels complete
Progress: 6 of 174 total .png panels complete
Progress: 8 of 174 total .png panels complete
Progress: 10 of 174 total .png panels complete
Progress: 14 of 174 total .png panels complete
Progress: 18 of 174 total .png panels complete
Progress: 22 of 174 total .png panels complete
Progress: 25 of 174 total .png panels complete
Progress: 28 of 174 total .png panels complete
Progress: 32 of 174 total .png panels complete
Progress: 36 of 174 total .png panels complete
Progress: 39 of 174 total .png panels complete
Progress: 43 of 174 total .png panels complete
Progress: 48 of 231 total .png panels complete
Progress: 53 of 231 total .png panels complete
Progress: 56 of 231 total .png panels complete
Progress: 63 of 231 total .png panels complete
Progress: 69 of 307 total .png panels complete
Progress: 73 of 307 total .png panels complete
Progress: 78 of 307 total .png panels complete
Progress: 83 of 307 total .png panels complete
Progress: 90 of 307 total .png panels complete
Progress: 96 of 307 total .png panels complete
Progress: 104 of 307 total .png panels complete
Progress: 110 of 307 total .png panels complete
Progress: 116 of 307 total .png panels complete
Progress: 122 of 307 total .png panels complete
Progress: 127 of 307 total .png panels complete
Progress: 136 of 307 total .png panels complete
Progress: 143 of 307 total .png panels complete
Progress: 149 of 307 total .png panels complete
Progress: 155 of 307 total .png panels complete
Progress: 161 of 307 total .png panels complete
Progress: 166 of 307 total .png panels complete
Progress: 172 of 307 total .png panels complete
Progress: 178 of 307 total .png panels complete
Progress: 183 of 307 total .png panels complete
Progress: 190 of 307 total .png panels complete
Progress: 196 of 307 total .png panels complete
Progress: 200 of 307 total .png panels complete
Progress: 205 of 307 total .png panels complete
Progress: 211 of 307 total .png panels complete
Progress: 219 of 307 total .png panels complete
Progress: 221 of 307 total .png panels complete
Progress: 224 of 307 total .png panels complete
Progress: 228 of 307 total .png panels complete
Progress: 230 of 307 total .png panels complete
Progress: 233 of 307 total .png panels complete
Progress: 236 of 307 total .png panels complete
Progress: 240 of 307 total .png panels complete
Progress: 242 of 307 total .png panels complete
Progress: 245 of 307 total .png panels complete
Progress: 248 of 307 total .png panels complete
Progress: 253 of 307 total .png panels complete
Progress: 59 of 231 total .png panels complete
Progress: 65 of 307 total .png panels complete
Progress: 70 of 307 total .png panels complete
Progress: 75 of 307 total .png panels complete
Progress: 79 of 307 total .png panels complete
Progress: 86 of 307 total .png panels complete
Progress: 91 of 307 total .png panels complete
Progress: 98 of 307 total .png panels complete
Progress: 106 of 307 total .png panels complete
Progress: 113 of 307 total .png panels complete
Progress: 119 of 307 total .png panels complete
Progress: 125 of 307 total .png panels complete
Progress: 131 of 307 total .png panels complete
Progress: 138 of 307 total .png panels complete
Progress: 144 of 307 total .png panels complete
Progress: 150 of 307 total .png panels complete
Progress: 156 of 307 total .png panels complete
Progress: 162 of 307 total .png panels complete
Progress: 168 of 307 total .png panels complete
Progress: 176 of 307 total .png panels complete
Progress: 184 of 307 total .png panels complete
Progress: 192 of 307 total .png panels complete
Progress: 195 of 307 total .png panels complete
Progress: 199 of 307 total .png panels complete
Progress: 202 of 307 total .png panels complete
Progress: 206 of 307 total .png panels complete
Progress: 210 of 307 total .png panels complete
Progress: 215 of 307 total .png panels complete
Progress: 218 of 307 total .png panels complete
Progress: 220 of 307 total .png panels complete
Progress: 223 of 307 total .png panels complete
Progress: 227 of 307 total .png panels complete
Progress: 232 of 307 total .png panels complete
Progress: 235 of 307 total .png panels complete
Progress: 238 of 307 total .png panels complete
Progress: 241 of 307 total .png panels complete
Progress: 243 of 307 total .png panels complete
Progress: 246 of 307 total .png panels complete
Progress: 250 of 307 total .png panels complete
Progress: 252 of 307 total .png panels complete
Progress: 255 of 307 total .png panels complete
Progress: 257 of 307 total .png panels complete
Progress: 259 of 307 total .png panels complete
Progress: 261 of 307 total .png panels complete
Progress: 263 of 307 total .png panels complete
Progress: 265 of 307 total .png panels complete
Progress: 268 of 307 total .png panels complete
Progress: 270 of 307 total .png panels complete
Progress: 272 of 307 total .png panels complete
Progress: 273 of 307 total .png panels complete
Progress: 276 of 307 total .png panels complete
Progress: 278 of 307 total .png panels complete
Progress: 280 of 307 total .png panels complete
Progress: 282 of 307 total .png panels complete
Progress: 284 of 307 total .png panels complete
Progress: 286 of 307 total .png panels complete
Progress: 288 of 307 total .png panels complete
Progress: 82 of 307 total .png panels complete
Progress: 87 of 307 total .png panels complete
Progress: 94 of 307 total .png panels complete
Progress: 100 of 307 total .png panels complete
Progress: 103 of 307 total .png panels complete
Progress: 109 of 307 total .png panels complete
Progress: 115 of 307 total .png panels complete
Progress: 121 of 307 total .png panels complete
Progress: 130 of 307 total .png panels complete
Progress: 134 of 307 total .png panels complete
Progress: 141 of 307 total .png panels complete
Progress: 147 of 307 total .png panels complete
Progress: 153 of 307 total .png panels complete
Progress: 158 of 307 total .png panels complete
Progress: 163 of 307 total .png panels complete
Progress: 170 of 307 total .png panels complete
Progress: 175 of 307 total .png panels complete
Progress: 180 of 307 total .png panels complete
Progress: 185 of 307 total .png panels complete
Progress: 191 of 307 total .png panels complete
Progress: 194 of 307 total .png panels complete
Progress: 198 of 307 total .png panels complete
Progress: 203 of 307 total .png panels complete
Progress: 207 of 307 total .png panels complete
Progress: 209 of 307 total .png panels complete
Progress: 213 of 307 total .png panels complete
Progress: 217 of 307 total .png panels complete
Progress: 222 of 307 total .png panels complete
Progress: 225 of 307 total .png panels complete
Progress: 226 of 307 total .png panels complete
Progress: 229 of 307 total .png panels complete
Progress: 231 of 307 total .png panels complete
Progress: 234 of 307 total .png panels complete
Progress: 237 of 307 total .png panels complete
Progress: 239 of 307 total .png panels complete
Progress: 244 of 307 total .png panels complete
Progress: 247 of 307 total .png panels complete
Progress: 249 of 307 total .png panels complete
Progress: 251 of 307 total .png panels complete
Progress: 254 of 307 total .png panels complete
Progress: 256 of 307 total .png panels complete
Progress: 258 of 307 total .png panels complete
Progress: 260 of 307 total .png panels complete
Progress: 262 of 307 total .png panels complete
Progress: 264 of 307 total .png panels complete
Progress: 266 of 307 total .png panels complete
Progress: 267 of 307 total .png panels complete
Progress: 269 of 307 total .png panels complete
Progress: 271 of 307 total .png panels complete
Progress: 274 of 307 total .png panels complete
Progress: 275 of 307 total .png panels complete
Progress: 277 of 307 total .png panels complete
Progress: 279 of 307 total .png panels complete
Progress: 281 of 307 total .png panels complete
Progress: 283 of 307 total .png panels complete
Progress: 285 of 307 total .png panels complete
Progress: 287 of 307 total .png panels complete
Progress: 289 of 307 total .png panels complete
Progress: 290 of 307 total .png panels complete
Progress: 291 of 307 total .png panels complete
Progress: 292 of 307 total .png panels complete
Progress: 293 of 307 total .png panels complete
Progress: 294 of 307 total .png panels complete
Progress: 295 of 307 total .png panels complete
Progress: 296 of 307 total .png panels complete
Progress: 297 of 307 total .png panels complete
Progress: 298 of 307 total .png panels complete
Progress: 299 of 307 total .png panels complete
Progress: 300 of 307 total .png panels complete
Progress: 301 of 307 total .png panels complete
Progress: 302 of 307 total .png panels complete
Progress: 303 of 307 total .png panels complete
Progress: 304 of 307 total .png panels complete
Progress: 305 of 307 total .png panels complete
Progress: 306 of 307 total .png panels complete
Progress: 307 of 307 total .png panels complete
-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/wrf_clubb_plot_ifort/27cfd1b/index.html with a web browser
Pyplotgen ran in 17 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-13 05:13:55.291 proc_id: 773770 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
